Psyllid ID: psy3949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM
Secondary Structure (PSIPRED)
ccccccccHHHccccHHHHHHccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHccccHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHEEEHcccccccccccccccccEccccccccccHHHHHHHHHHcccccccccccccHHHHccccHHHHHEEEcccccccccEEEEEc
Coil and Loop (DISEMBL)
vrcqyckhslsvSNGFEIVLSHTksctyisrpdhnyrfvcytcpyhttysqSMKShlrkhsgekpykclfcdyhctqsgplrrhMKIKHLmessnshditfvm
Flexible Loop (DISEMBL)
vrcqyckhslsvsNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHlmessnshditfvm
Low Complexity Region (SEG)
VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM
Disordered region (IsUnstruct)
**CQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQ************KPYKCLFCDYHCTQSGPL**********************
Disordered Region (DISOPRED)
VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM
Disordered Region (DISEMBL)
VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTY************GEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM
Disordered Region (DISPRO)
VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q9NPA5	681	Zinc finger protein 64 ho	no	N/A	0.757	0.114	0.370	6e-09
Q9NTW7	645	Zinc finger protein 64 ho	no	N/A	0.757	0.120	0.359	1e-07
Q6NRM0	453	Zinc finger protein Pegas	N/A	N/A	0.796	0.181	0.318	1e-07
Q99KE8	643	Zinc finger protein 64 OS	no	N/A	0.757	0.121	0.359	1e-07
A0JPB4	434	Zinc finger protein Pegas	yes	N/A	0.796	0.188	0.318	1e-07
Q5ZLR2	421	Zinc finger protein Pegas	no	N/A	0.796	0.194	0.318	1e-07
Q8BU00	419	Zinc finger protein Pegas	no	N/A	0.796	0.195	0.318	2e-07
Q9H5V7	419	Zinc finger protein Pegas	no	N/A	0.796	0.195	0.318	2e-07
Q5R9W9	420	Zinc finger protein Pegas	no	N/A	0.796	0.195	0.318	2e-07
A4IFJ6	419	Zinc finger protein Pegas	no	N/A	0.796	0.195	0.318	2e-07

>sp|Q9NPA5|ZF64A_HUMAN Zinc finger protein 64 homolog, isoforms 1 and 2 OS=Homo sapiens GN=ZFP64 PE=1 SV=3

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 11/89 (12%)

Query: 2   RCQYCKHSLSVSNGFEIVL-SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           +CQ C ++   S+   + L SHT           +  F C+ C      S  +K H+R H
Sbjct: 232 KCQICPYASRNSSQLTVHLRSHTG----------DAPFQCWLCSAKFKISSDLKRHMRVH 281

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
           SGEKP+KC FC+  CT  G L+ H++IKH
Sbjct: 282 SGEKPFKCEFCNVRCTMKGNLKSHIRIKH 310

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|Q9NTW7|ZF64B_HUMAN Zinc finger protein 64 homolog, isoforms 3 and 4 OS=Homo sapiens GN=ZFP64 PE=2 SV=3

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 2   RCQYCKHSLSVSNGFEIVL-SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           +CQ C ++   S+   + L SHT           +  F C+ C      S  +K H+  H
Sbjct: 387 KCQLCPYASRNSSQLTVHLRSHTG----------DTPFQCWLCSAKFKISSDLKRHMIVH 436

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
           SGEKP+KC FCD  CT    L+ H++IKH
Sbjct: 437 SGEKPFKCEFCDVRCTMKANLKSHIRIKH 465

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6NRM0|IKZF5_XENLA Zinc finger protein Pegasus OS=Xenopus laevis GN=ikzf5 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 1   VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           ++C+YC ++   S G   ++ H +    I   +  +R  C+ CP+ + Y + +++H+R H
Sbjct: 101 LKCRYCNYA---SKGTARLIEHIR----IHTGEKPHR--CHLCPFASAYERHLEAHMRSH 151

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
           +GEKPYKC  C + C+    L  H + KH M
Sbjct: 152 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 182

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Xenopus laevis (taxid: 8355)

>sp|Q99KE8|ZFP64_MOUSE Zinc finger protein 64 OS=Mus musculus GN=Zfp64 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 2   RCQYCKHSLSVSNGFEIVL-SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           +CQ C ++   S+   + L SHT           +  F C+ C      S  +K H+  H
Sbjct: 385 KCQLCPYASRNSSQLTVHLRSHTG----------DTPFQCWLCSAKFKISSDLKRHMIVH 434

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
           SGEKP+KC FCD  CT    L+ H++IKH
Sbjct: 435 SGEKPFKCEFCDVRCTMKANLKSHIRIKH 463

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|A0JPB4|IKZF5_XENTR Zinc finger protein Pegasus OS=Xenopus tropicalis GN=ikzf5 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 1   VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           ++C+YC ++   S G   ++ H +    I   +  +R  C+ CP+ + Y + +++H+R H
Sbjct: 82  LKCRYCNYA---SKGTARLIEHIR----IHTGEKPHR--CHLCPFASAYERHLEAHMRSH 132

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
           +GEKPYKC  C + C+    L  H + KH M
Sbjct: 133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZLR2|IKZF5_CHICK Zinc finger protein Pegasus OS=Gallus gallus GN=IKZF5 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 1   VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           ++C+YC ++   S G   ++ H +    I   +  +R  C+ CP+ + Y + +++H+R H
Sbjct: 82  LKCRYCNYA---SKGTARLIEHIR----IHTGEKPHR--CHLCPFASAYERHLEAHMRSH 132

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
           +GEKPYKC  C + C+    L  H + KH M
Sbjct: 133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Gallus gallus (taxid: 9031)

>sp|Q8BU00|IKZF5_MOUSE Zinc finger protein Pegasus OS=Mus musculus GN=Ikzf5 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 1   VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           ++C+YC ++   S G   ++ H +    I   +  +R  C+ CP+ + Y + +++H+R H
Sbjct: 82  LKCRYCNYA---SKGTARLIEHIR----IHTGEKPHR--CHLCPFASAYERHLEAHMRSH 132

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
           +GEKPYKC  C + C+    L  H + KH M
Sbjct: 133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Mus musculus (taxid: 10090)

>sp|Q9H5V7|IKZF5_HUMAN Zinc finger protein Pegasus OS=Homo sapiens GN=IKZF5 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 1   VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           ++C+YC ++   S G   ++ H +    I   +  +R  C+ CP+ + Y + +++H+R H
Sbjct: 82  LKCRYCNYA---SKGTARLIEHIR----IHTGEKPHR--CHLCPFASAYERHLEAHMRSH 132

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
           +GEKPYKC  C + C+    L  H + KH M
Sbjct: 133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|Q5R9W9|IKZF5_PONAB Zinc finger protein Pegasus OS=Pongo abelii GN=IKZF5 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 1   VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           ++C+YC ++   S G   ++ H +    I   +  +R  C+ CP+ + Y + +++H+R H
Sbjct: 82  LKCRYCNYA---SKGTARLIEHIR----IHTGEKPHR--CHLCPFASAYERHLEAHMRSH 132

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
           +GEKPYKC  C + C+    L  H + KH M
Sbjct: 133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Pongo abelii (taxid: 9601)

>sp|A4IFJ6|IKZF5_BOVIN Zinc finger protein Pegasus OS=Bos taurus GN=IKZF5 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 1   VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           ++C+YC ++   S G   ++ H +    I   +  +R  C+ CP+ + Y + +++H+R H
Sbjct: 82  LKCRYCNYA---SKGTARLIEHIR----IHTGEKPHR--CHLCPFASAYERHLEAHMRSH 132

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
           +GEKPYKC  C + C+    L  H + KH M
Sbjct: 133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
224078670	887	PREDICTED: zinc finger protein 64 homolo	0.805	0.093	0.382	6e-09
260832596	286	hypothetical protein BRAFLDRAFT_71202 [B	0.466	0.167	0.571	2e-08
260832602	236	hypothetical protein BRAFLDRAFT_148654 [	0.436	0.190	0.571	2e-08
71894907	689	zinc finger protein 64 [Gallus gallus] g	0.805	0.120	0.361	3e-08
291409286	647	PREDICTED: zinc finger protein 64 [Oryct	0.757	0.120	0.382	3e-08
260786741	519	hypothetical protein BRAFLDRAFT_198833 [	0.815	0.161	0.365	3e-08
326932198	668	PREDICTED: zinc finger protein 64 homolo	0.805	0.124	0.361	3e-08
410900318	624	PREDICTED: zinc finger protein 64 homolo	0.805	0.133	0.382	4e-08
47229119	581	unnamed protein product [Tetraodon nigro	0.805	0.142	0.382	6e-08
260819572	1269	hypothetical protein BRAFLDRAFT_84220 [B	0.495	0.040	0.509	6e-08

>gi|224078670|ref|XP_002186745.1| PREDICTED: zinc finger protein 64 homolog, isoforms 1 and 2, partial [Taeniopygia guttata]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 2   RCQYCKHSLSVSNGFEIVL-SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           +CQ C ++   S+   + L SHT           +  F C  CP     +  +K HLR H
Sbjct: 441 KCQICPYASRNSSQLTVHLRSHTG----------DAPFQCQVCPAKFKINSDLKRHLRVH 490

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
           SGEKPYKC FC+  C   G L+ H++IKH ME++
Sbjct: 491 SGEKPYKCEFCEVRCAMKGNLKSHVRIKHSMENT 524

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260832596|ref|XP_002611243.1| hypothetical protein BRAFLDRAFT_71202 [Branchiostoma floridae] gi|229296614|gb|EEN67253.1| hypothetical protein BRAFLDRAFT_71202 [Branchiostoma floridae]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query: 37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHM 85
          RFVC TC Y T+   S+  H+R+H+GEKPYKC  CDY  TQ G L++HM
Sbjct: 9  RFVCETCGYRTSDKSSLIVHIRRHTGEKPYKCDLCDYSATQKGSLKQHM 57

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260832602|ref|XP_002611246.1| hypothetical protein BRAFLDRAFT_148654 [Branchiostoma floridae] gi|229296617|gb|EEN67256.1| hypothetical protein BRAFLDRAFT_148654 [Branchiostoma floridae]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query: 37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHM 85
          RFVC TC Y T+   S+  H+R+H+GEKPYKC  CDY  TQ G L++HM
Sbjct: 9  RFVCETCGYRTSDKSSLIVHIRRHTGEKPYKCDLCDYSATQKGSLKQHM 57

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|71894907|ref|NP_001026040.1| zinc finger protein 64 [Gallus gallus] gi|53133336|emb|CAG31997.1| hypothetical protein RCJMB04_15k11 [Gallus gallus]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 2   RCQYCKHSLSVSNGFEIVL-SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           +CQ C ++   S+   + L SHT           +  F C  CP     +  +K H+R H
Sbjct: 234 KCQICPYASRNSSQLTVHLRSHTG----------DAPFQCQMCPAKFKINSDLKRHMRVH 283

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
           SGEKPYKC +C+  C   G L+ H++IKH ME++
Sbjct: 284 SGEKPYKCEYCEVRCAMKGNLKSHIRIKHSMENT 317

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291409286|ref|XP_002720939.1| PREDICTED: zinc finger protein 64 [Oryctolagus cuniculus]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 11/89 (12%)

Query: 2   RCQYCKHSLSVSNGFEIVL-SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           +CQ C ++   S+   + L SHT              F C+ C      S  +K H+R H
Sbjct: 195 KCQLCPYASRNSSQLTVHLRSHTGDAP----------FQCWLCSAKFKISSDLKRHMRVH 244

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
           SGEKP+KC FCD  CT  G L+ H++IKH
Sbjct: 245 SGEKPFKCEFCDVRCTMKGNLKSHVRIKH 273

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260786741|ref|XP_002588415.1| hypothetical protein BRAFLDRAFT_198833 [Branchiostoma floridae] gi|229273577|gb|EEN44426.1| hypothetical protein BRAFLDRAFT_198833 [Branchiostoma floridae]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 2   RCQYCKHSLSVSNGFE--IVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRK 59
           +C  C +S +     +  I+++HT    Y S       ++C  C Y T++S S   H+R 
Sbjct: 200 KCDQCDYSAAQKGTLDQHIMVNHTGERPYKS-------YMCTECGYRTSHSSSFSRHMRT 252

Query: 60  HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLME 92
           H+GEKPYKC  CDY   Q  PL +H+ +KH  E
Sbjct: 253 HTGEKPYKCDLCDYSAAQKYPLDQHIMVKHTGE 285

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326932198|ref|XP_003212207.1| PREDICTED: zinc finger protein 64 homolog, isoforms 1 and 2-like, partial [Meleagris gallopavo]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 2   RCQYCKHSLSVSNGFEIVL-SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           +CQ C ++   S+   + L SHT           +  F C  CP     +  +K H+R H
Sbjct: 213 KCQICPYASRNSSQLTVHLRSHTG----------DAPFQCQMCPAKFKINSDLKRHMRVH 262

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
           SGEKPYKC +C+  C   G L+ H++IKH ME++
Sbjct: 263 SGEKPYKCEYCEVRCAMKGNLKSHIRIKHSMENT 296

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410900318|ref|XP_003963643.1| PREDICTED: zinc finger protein 64 homolog, isoforms 1 and 2-like [Takifugu rubripes]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 2   RCQYCKHSLSVSNGFEIVL-SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           +CQ C ++   S+   + L SHT           +  F C  C      +  +K H+R H
Sbjct: 178 KCQICPYASRNSSQLTVHLRSHTG----------DAPFQCQQCDAKFKINSDLKRHVRIH 227

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
           SGEKPYKC FCDY C   G L+ H++IKH  E+S
Sbjct: 228 SGEKPYKCDFCDYRCAMKGNLKSHVQIKHSTENS 261

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47229119|emb|CAG03871.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 2   RCQYCKHSLSVSNGFEIVL-SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
           +CQ C ++   S+   + L SHT           +  F C  C      +  +K H+R H
Sbjct: 205 KCQICPYASRNSSQLTVHLRSHTG----------DAPFQCQQCDAKFKINSDLKRHVRIH 254

Query: 61  SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
           SGEKPYKC FCDY C   G L+ H++IKH  E+S
Sbjct: 255 SGEKPYKCDFCDYRCAMKGNLKSHVQIKHSSENS 288

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260819572|ref|XP_002605110.1| hypothetical protein BRAFLDRAFT_84220 [Branchiostoma floridae] gi|229290441|gb|EEN61120.1| hypothetical protein BRAFLDRAFT_84220 [Branchiostoma floridae]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 32/51 (62%)

Query: 37  RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
           R  C  CPY T Y + M+ H R HSGEKPYKC  C+Y C++ G L  H +I
Sbjct: 492 RLQCEQCPYSTPYHKKMEVHKRVHSGEKPYKCEECEYTCSEKGRLDAHRRI 542

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
UNIPROTKB|F1NMT1	559	ZFP64 "Uncharacterized protein	0.805	0.148	0.372	1.5e-11
UNIPROTKB|A4IFJ6	419	IKZF5 "Zinc finger protein Peg	0.796	0.195	0.329	1.8e-11
UNIPROTKB|J9JHL8	419	IKZF5 "Uncharacterized protein	0.796	0.195	0.329	1.8e-11
UNIPROTKB|Q9H5V7	419	IKZF5 "Zinc finger protein Peg	0.796	0.195	0.329	1.8e-11
UNIPROTKB|F1SED1	419	IKZF5 "Uncharacterized protein	0.796	0.195	0.329	1.8e-11
MGI|MGI:1914393	419	Ikzf5 "IKAROS family zinc fing	0.796	0.195	0.329	1.8e-11
RGD|1310965	419	Ikzf5 "IKAROS family zinc fing	0.796	0.195	0.329	1.8e-11
UNIPROTKB|E1BWQ0	421	IKZF5 "Zinc finger protein Peg	0.796	0.194	0.329	1.8e-11
UNIPROTKB|Q5ZLR2	421	IKZF5 "Zinc finger protein Peg	0.796	0.194	0.329	1.8e-11
UNIPROTKB|F1NF01	424	IKZF5 "Zinc finger protein Peg	0.796	0.193	0.329	1.9e-11

UNIPROTKB|F1NMT1 ZFP64 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 35/94 (37%), Positives = 50/94 (53%)

Query:     2 RCQYCKHSLSVSNGFEIVL-SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
             +CQ C ++   S+   + L SHT        P     F C  CP     +  +K H+R H
Sbjct:   295 KCQICPYASRNSSQLTVHLRSHTGDA-----P-----FQCQMCPAKFKINSDLKRHMRVH 344

Query:    61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
             SGEKPYKC +C+  C   G L+ H++IKH ME++
Sbjct:   345 SGEKPYKCEYCEVRCAMKGNLKSHIRIKHSMENT 378

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A4IFJ6 IKZF5 "Zinc finger protein Pegasus" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 30/91 (32%), Positives = 51/91 (56%)

Query:     1 VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
             ++C+YC ++   S G   ++ H +  T   +P H     C+ CP+ + Y + +++H+R H
Sbjct:    82 LKCRYCNYA---SKGTARLIEHIRIHTG-EKP-HR----CHLCPFASAYERHLEAHMRSH 132

Query:    61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
             +GEKPYKC  C + C+    L  H + KH M
Sbjct:   133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9JHL8 IKZF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 30/91 (32%), Positives = 51/91 (56%)

Query:     1 VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
             ++C+YC ++   S G   ++ H +  T   +P H     C+ CP+ + Y + +++H+R H
Sbjct:    82 LKCRYCNYA---SKGTARLIEHIRIHTG-EKP-HR----CHLCPFASAYERHLEAHMRSH 132

Query:    61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
             +GEKPYKC  C + C+    L  H + KH M
Sbjct:   133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9H5V7 IKZF5 "Zinc finger protein Pegasus" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 30/91 (32%), Positives = 51/91 (56%)

Query:     1 VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
             ++C+YC ++   S G   ++ H +  T   +P H     C+ CP+ + Y + +++H+R H
Sbjct:    82 LKCRYCNYA---SKGTARLIEHIRIHTG-EKP-HR----CHLCPFASAYERHLEAHMRSH 132

Query:    61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
             +GEKPYKC  C + C+    L  H + KH M
Sbjct:   133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SED1 IKZF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 30/91 (32%), Positives = 51/91 (56%)

Query:     1 VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
             ++C+YC ++   S G   ++ H +  T   +P H     C+ CP+ + Y + +++H+R H
Sbjct:    82 LKCRYCNYA---SKGTARLIEHIRIHTG-EKP-HR----CHLCPFASAYERHLEAHMRSH 132

Query:    61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
             +GEKPYKC  C + C+    L  H + KH M
Sbjct:   133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1914393 Ikzf5 "IKAROS family zinc finger 5" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 30/91 (32%), Positives = 51/91 (56%)

Query:     1 VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
             ++C+YC ++   S G   ++ H +  T   +P H     C+ CP+ + Y + +++H+R H
Sbjct:    82 LKCRYCNYA---SKGTARLIEHIRIHTG-EKP-HR----CHLCPFASAYERHLEAHMRSH 132

Query:    61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
             +GEKPYKC  C + C+    L  H + KH M
Sbjct:   133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1310965 Ikzf5 "IKAROS family zinc finger 5" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 30/91 (32%), Positives = 51/91 (56%)

Query:     1 VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
             ++C+YC ++   S G   ++ H +  T   +P H     C+ CP+ + Y + +++H+R H
Sbjct:    82 LKCRYCNYA---SKGTARLIEHIRIHTG-EKP-HR----CHLCPFASAYERHLEAHMRSH 132

Query:    61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
             +GEKPYKC  C + C+    L  H + KH M
Sbjct:   133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BWQ0 IKZF5 "Zinc finger protein Pegasus" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 30/91 (32%), Positives = 51/91 (56%)

Query:     1 VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
             ++C+YC ++   S G   ++ H +  T   +P H     C+ CP+ + Y + +++H+R H
Sbjct:    82 LKCRYCNYA---SKGTARLIEHIRIHTG-EKP-HR----CHLCPFASAYERHLEAHMRSH 132

Query:    61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
             +GEKPYKC  C + C+    L  H + KH M
Sbjct:   133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5ZLR2 IKZF5 "Zinc finger protein Pegasus" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 30/91 (32%), Positives = 51/91 (56%)

Query:     1 VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
             ++C+YC ++   S G   ++ H +  T   +P H     C+ CP+ + Y + +++H+R H
Sbjct:    82 LKCRYCNYA---SKGTARLIEHIRIHTG-EKP-HR----CHLCPFASAYERHLEAHMRSH 132

Query:    61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
             +GEKPYKC  C + C+    L  H + KH M
Sbjct:   133 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 163

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NF01 IKZF5 "Zinc finger protein Pegasus" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 30/91 (32%), Positives = 51/91 (56%)

Query:     1 VRCQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH 60
             ++C+YC ++   S G   ++ H +  T   +P H     C+ CP+ + Y + +++H+R H
Sbjct:    85 LKCRYCNYA---SKGTARLIEHIRIHTG-EKP-HR----CHLCPFASAYERHLEAHMRSH 135

Query:    61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
             +GEKPYKC  C + C+    L  H + KH M
Sbjct:   136 TGEKPYKCELCSFRCSDRSNLSHHRRRKHKM 166

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG2462|consensus	279		99.94
KOG2462|consensus	279		99.89
KOG3576|consensus	267		99.73
KOG3623|consensus	1007		99.68
KOG3623|consensus	1007		99.61
KOG1074|consensus	958		99.59
KOG3576|consensus	267		99.56
KOG3608|consensus	467		99.37
KOG3608|consensus	467		99.24
PHA02768	55	hypothetical protein; Provisional	99.22
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.22
PLN03086	567	PRLI-interacting factor K; Provisional	99.18
PHA00733	128	hypothetical protein	99.1
PHA02768	55	hypothetical protein; Provisional	99.07
KOG1074|consensus	958		99.07
PHA00733	128	hypothetical protein	99.05
PLN03086	567	PRLI-interacting factor K; Provisional	98.88
PHA00616	44	hypothetical protein	98.83
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.78
PHA00732	79	hypothetical protein	98.52
PHA00616	44	hypothetical protein	98.46
PHA00732	79	hypothetical protein	98.3
KOG3993|consensus	500		98.16
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.92
KOG3993|consensus	500		97.9
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.9
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.88
PRK04860	160	hypothetical protein; Provisional	97.85
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.7
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.67
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.6
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.5
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.49
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.41
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.1
smart00355	26	ZnF_C2H2 zinc finger.	97.06
PRK04860	160	hypothetical protein; Provisional	96.98
smart00355	26	ZnF_C2H2 zinc finger.	96.91
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.63
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.54
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.45
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.36
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.24
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.01
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.87
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	95.84
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.2
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.23
COG5048	467	FOG: Zn-finger [General function prediction only]	93.77
COG1592	166	Rubrerythrin [Energy production and conversion]	93.69
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.36
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	93.28
KOG2893|consensus	341		93.02
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	92.69
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.21
PRK06266	178	transcription initiation factor E subunit alpha; V	91.96
KOG2893|consensus	341		91.67
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	91.49
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	91.39
smart00531	147	TFIIE Transcription initiation factor IIE.	91.31
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	91.3
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	91.07
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	91.01
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	90.79
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	90.72
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	90.59
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	90.21
KOG2186|consensus	276		89.88
COG5048	467	FOG: Zn-finger [General function prediction only]	89.68
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	89.48
KOG2186|consensus	276		89.35
PHA00626	59	hypothetical protein	89.19
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	88.4
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	88.31
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	88.06
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.02
PF15135	278	UPF0515: Uncharacterised protein UPF0515	86.16
COG4049	65	Uncharacterized protein containing archaeal-type C	85.74
KOG1146|consensus	1406		85.5
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	85.3
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	85.18
COG3357	97	Predicted transcriptional regulator containing an	84.66
COG0068	750	HypF Hydrogenase maturation factor [Posttranslatio	83.63
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	83.36
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	82.69
PRK09678	72	DNA-binding transcriptional regulator; Provisional	81.15
PF00301	47	Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubred	81.14
PF08790	28	zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IP	80.7
cd00730	50	rubredoxin Rubredoxin; nonheme iron binding domain	80.55
PF10013	42	DUF2256: Uncharacterized protein conserved in bact	80.33
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	80.19

>KOG2462|consensus

Probab=99.94  E-value=2.6e-28  Score=143.40  Aligned_cols=90  Identities=22%  Similarity=0.480  Sum_probs=77.8

Q ss_pred             cccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcch
Q psy3949           2 RCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGP   80 (103)
Q Consensus         2 ~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~   80 (103)
                      .|+.|||.+.+.-.|.. +++|.            .+..|.+||+.|...+.|+.|+++|+|+|||.|..|+++|...++
T Consensus       163 ~C~~C~K~YvSmpALkMHirTH~------------l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSN  230 (279)
T KOG2462|consen  163 SCKYCGKVYVSMPALKMHIRTHT------------LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSN  230 (279)
T ss_pred             cCCCCCceeeehHHHhhHhhccC------------CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHH
Confidence            45555555555555555 55443            368999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccCccCCCCCccccC
Q psy3949          81 LRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        81 l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      |..|+++|.+.|+|+|..|+|+|
T Consensus       231 LRAHmQTHS~~K~~qC~~C~KsF  253 (279)
T KOG2462|consen  231 LRAHMQTHSDVKKHQCPRCGKSF  253 (279)
T ss_pred             HHHHHHhhcCCccccCcchhhHH
Confidence            99999999999999999999998

>KOG2462|consensus

Probab=99.89  E-value=1e-23  Score=124.15  Aligned_cols=94  Identities=19%  Similarity=0.320  Sum_probs=84.9

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|+.||+.+.+.++|.. ...|....       .++.+.|..|++.+.+-..|..|+++|+  .+..|.+||+.|..+=
T Consensus       131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~-------s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPW  201 (279)
T KOG2462|consen  131 YKCPECGKSYSTSSNLSRHKQTHRSLD-------SKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPW  201 (279)
T ss_pred             eeccccccccccccccchhhccccccc-------ccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchH
Confidence            579999999999999999 77885431       2337899999999999999999999985  6899999999999999


Q ss_pred             hhhhhhhhcccCccCCCCCccccC
Q psy3949          80 PLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        80 ~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .|+.|+|+|+|||||.|+.|++.|
T Consensus       202 LLQGHiRTHTGEKPF~C~hC~kAF  225 (279)
T KOG2462|consen  202 LLQGHIRTHTGEKPFSCPHCGKAF  225 (279)
T ss_pred             HhhcccccccCCCCccCCcccchh
Confidence            999999999999999999999988

>KOG3576|consensus

Probab=99.73  E-value=2.3e-19  Score=102.17  Aligned_cols=92  Identities=24%  Similarity=0.496  Sum_probs=82.9

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|.+|+|.|.....|.. +..|...     +     .+-|..||+.|-..-.|..|++.|+|.+||+|..|+++|.+.-
T Consensus       118 ftCrvCgK~F~lQRmlnrh~kch~~v-----k-----r~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrc  187 (267)
T KOG3576|consen  118 FTCRVCGKKFGLQRMLNRHLKCHSDV-----K-----RHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRC  187 (267)
T ss_pred             eeeehhhhhhhHHHHHHHHhhhccHH-----H-----HHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhc
Confidence            469999999999988999 9999988     8     8999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhh-cc----------cCccCCCCCcccc
Q psy3949          80 PLRRHMKI-KH----------LMESSNSHDITFV  102 (103)
Q Consensus        80 ~l~~h~~~-~~----------~e~~~~C~~C~~~  102 (103)
                      +|..|.+. |.          .+|.|.|.+||+|
T Consensus       188 sleshl~kvhgv~~~yaykerr~kl~vcedcg~t  221 (267)
T KOG3576|consen  188 SLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYT  221 (267)
T ss_pred             cHHHHHHHHcCchHHHHHHHhhhheeeecccCCC
Confidence            99999775 32          3467999999986

>KOG3623|consensus

Probab=99.68  E-value=4.4e-18  Score=111.41  Aligned_cols=67  Identities=19%  Similarity=0.425  Sum_probs=63.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .|.|+.|++.|...+.|..|.-.|+|.+||+|.+|.++|.....|..|.|+|.|||||.|+.|+|-|
T Consensus       894 myaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRF  960 (1007)
T KOG3623|consen  894 MYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRF  960 (1007)
T ss_pred             cchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhc
Confidence            5899999999999999999999999999999999999999999999999999999999999999876

>KOG3623|consensus

Probab=99.61  E-value=8.4e-17  Score=105.56  Aligned_cols=75  Identities=27%  Similarity=0.579  Sum_probs=72.0

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|+.|+|+|.-.++|.. .-.|+|.     +     ||.|.+|.+.|..+-+|..|.+.|.|++||+|.+|++.|+.+.
T Consensus       895 yaCDqCDK~FqKqSSLaRHKYEHsGq-----R-----PyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSG  964 (1007)
T KOG3623|consen  895 YACDQCDKAFQKQSSLARHKYEHSGQ-----R-----PYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSG  964 (1007)
T ss_pred             chHHHHHHHHHhhHHHHHhhhhhcCC-----C-----CcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhccccc
Confidence            679999999999999999 8889999     9     9999999999999999999999999999999999999999999


Q ss_pred             hhhhhh
Q psy3949          80 PLRRHM   85 (103)
Q Consensus        80 ~l~~h~   85 (103)
                      ++.+|+
T Consensus       965 SYSQHM  970 (1007)
T KOG3623|consen  965 SYSQHM  970 (1007)
T ss_pred             chHhhh
Confidence            999887

>KOG1074|consensus

Probab=99.59  E-value=2e-16  Score=104.80  Aligned_cols=47  Identities=26%  Similarity=0.655  Sum_probs=32.0

Q ss_pred             cccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHH
Q psy3949           2 RCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus         2 ~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      +|..|.+.|.+.+.|+. .++|+|+     +     ||.|.+||..|..+.+|..|..
T Consensus       355 kCr~CakvfgS~SaLqiHlRSHTGE-----R-----PfqCnvCG~~FSTkGNLKvH~~  402 (958)
T KOG1074|consen  355 KCRFCAKVFGSDSALQIHLRSHTGE-----R-----PFQCNVCGNRFSTKGNLKVHFQ  402 (958)
T ss_pred             hhhhhHhhcCchhhhhhhhhccCCC-----C-----Ceeecccccccccccceeeeee
Confidence            46667777777777776 6677777     6     6777777777777666666643

>KOG3576|consensus

Probab=99.56  E-value=4e-16  Score=89.10  Aligned_cols=67  Identities=21%  Similarity=0.351  Sum_probs=64.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .+.|.+|++.|.....|..|+.-|...+.+.|..||+.|.....|.+|.++|+|-+||+|..|++.|
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaf  183 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAF  183 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999999987

>KOG3608|consensus

Probab=99.37  E-value=1.3e-13  Score=84.65  Aligned_cols=92  Identities=20%  Similarity=0.397  Sum_probs=65.3

Q ss_pred             cccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcch
Q psy3949           2 RCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGP   80 (103)
Q Consensus         2 ~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~   80 (103)
                      .|+.||..|+....|-+ .+..+..   ++.     +|.|..|.+.|.....|..|++.|.  +-|+|+.|....+..++
T Consensus       209 ACp~Cg~~F~~~tkl~DH~rRqt~l---~~n-----~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~ss  278 (467)
T KOG3608|consen  209 ACPHCGELFRTKTKLFDHLRRQTEL---NTN-----SFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSASS  278 (467)
T ss_pred             ecchHHHHhccccHHHHHHHhhhhh---cCC-----chHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCChHH
Confidence            37778888877777766 4433221   113     6778888888888777777777773  35778888888888888


Q ss_pred             hhhhhhh-cccCccCCCCCccccC
Q psy3949          81 LRRHMKI-KHLMESSNSHDITFVM  103 (103)
Q Consensus        81 l~~h~~~-~~~e~~~~C~~C~~~~  103 (103)
                      |.+|++. |...|||+|+.|.+.|
T Consensus       279 L~~H~r~rHs~dkpfKCd~Cd~~c  302 (467)
T KOG3608|consen  279 LTTHIRYRHSKDKPFKCDECDTRC  302 (467)
T ss_pred             HHHHHHhhhccCCCccccchhhhh
Confidence            8888876 7777888888887643

>KOG3608|consensus

Probab=99.24  E-value=1.9e-12  Score=79.55  Aligned_cols=66  Identities=23%  Similarity=0.400  Sum_probs=36.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc--CcccccCcchhhhhhhhcc-cC--ccCCCCCccccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKIKH-LM--ESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~-~e--~~~~C~~C~~~~  103 (103)
                      |+.|+.|++.+.....|+.|...|. +..|+|..  |...+.+...+.+|.+.++ |.  .+|.|..|+++|
T Consensus       292 pfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~f  362 (467)
T KOG3608|consen  292 PFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFF  362 (467)
T ss_pred             CccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhh
Confidence            5566666666665666666655554 34455544  5555555555555555432 32  346666666654

>PHA02768 hypothetical protein; Provisional

Probab=99.22  E-value=5.5e-12  Score=58.18  Aligned_cols=44  Identities=27%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhh
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLR   82 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~   82 (103)
                      -|.|+.||+.|....+|..|++.|.  ++++|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            4788888888888888888888887  5788888888888766654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.22  E-value=1.7e-12  Score=51.77  Aligned_cols=24  Identities=21%  Similarity=0.149  Sum_probs=20.6

Q ss_pred             hhhhhhhhcccCccCCCCCccccC
Q psy3949          80 PLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        80 ~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      +|.+|+++|+|++||.|++|++.|
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F   24 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSF   24 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEE
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCee
Confidence            477899999999999999999876

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.18  E-value=3.7e-11  Score=78.58  Aligned_cols=86  Identities=14%  Similarity=0.244  Sum_probs=67.9

Q ss_pred             cccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccC---
Q psy3949           2 RCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQ---   77 (103)
Q Consensus         2 ~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~---   77 (103)
                      .|+.|++.|. ...+.. +..+.       .     ++.|+ |+..+ ....|..|+..|-..+++.|..|+..+..   
T Consensus       455 ~C~~Cgk~f~-~s~LekH~~~~H-------k-----pv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~  519 (567)
T PLN03086        455 HCEKCGQAFQ-QGEMEKHMKVFH-------E-----PLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGS  519 (567)
T ss_pred             cCCCCCCccc-hHHHHHHHHhcC-------C-----CccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCcc
Confidence            5889999885 455666 55542       4     78899 99755 56889999988999999999999998852   


Q ss_pred             -------cchhhhhhhhcccCccCCCCCccccC
Q psy3949          78 -------SGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        78 -------~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                             .+.|..|.... |.+++.|..||+.|
T Consensus       520 ~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~V  551 (567)
T PLN03086        520 AMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSV  551 (567)
T ss_pred             ccchhhhhhhHHHHHHhc-CCcceEccccCCee
Confidence                   34788898885 88999999999864

>PHA00733 hypothetical protein

Probab=99.10  E-value=2.5e-11  Score=66.11  Aligned_cols=65  Identities=17%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             ceecCCCCCCccchhHHHHH--HH---HhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSH--LR---KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h--~~---~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      ++.|.+|...+.....|..+  +.   .+.+.+||.|..|++.|.....|..|++.+  +.+|.|++|++.|
T Consensus        40 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F  109 (128)
T PHA00733         40 RLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEF  109 (128)
T ss_pred             hHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCcc
Confidence            55666666655555444443  11   223355666666666666666666666654  3456666666655

>PHA02768 hypothetical protein; Provisional

Probab=99.07  E-value=1e-10  Score=54.04  Aligned_cols=37  Identities=11%  Similarity=0.291  Sum_probs=33.4

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      -|.|+.||+.|...++|..|+++|+  ++|+|..|++.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f   41 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRIS   41 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCccccee
Confidence            4789999999999999999999998  789999999876

>KOG1074|consensus

Probab=99.07  E-value=7.8e-11  Score=79.03  Aligned_cols=67  Identities=24%  Similarity=0.475  Sum_probs=58.0

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCcc----CCCC---CccccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMES----SNSH---DITFVM  103 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~----~~C~---~C~~~~  103 (103)
                      +..|.+|.++..-.+.|+.|.+.|+|++||+|.+|+++|....+|..|+.+|....+    ++|+   +|.+-|
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kf  678 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKF  678 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccc
Confidence            678999999999999999999999999999999999999999999999998876543    6788   776544

>PHA00733 hypothetical protein

Probab=99.05  E-value=1.6e-10  Score=62.97  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=58.4

Q ss_pred             cccCCCcccccccCHHH---HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCc
Q psy3949           2 RCQYCKHSLSVSNGFEI---VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQS   78 (103)
Q Consensus         2 ~C~~C~~~f~~~~~l~~---~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~   78 (103)
                      .|..|++.|.....+..   +..|..       .....+|.|+.|++.|.....|..|++.+  ..++.|..|++.|...
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~l~~~~~-------~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~  112 (128)
T PHA00733         42 IRAVVKTLIYNPQLLDESSYLYKLLT-------SKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNT  112 (128)
T ss_pred             HHHHHhhhccChhhhcchHHHHhhcc-------cCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCH
Confidence            35667766666544433   111111       11123899999999999999999999876  4579999999999999


Q ss_pred             chhhhhhhhccc
Q psy3949          79 GPLRRHMKIKHL   90 (103)
Q Consensus        79 ~~l~~h~~~~~~   90 (103)
                      ..|..|+...++
T Consensus       113 ~sL~~H~~~~h~  124 (128)
T PHA00733        113 DSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHHHhcC
Confidence            999999887553

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.88  E-value=3e-09  Score=69.87  Aligned_cols=64  Identities=13%  Similarity=0.252  Sum_probs=54.8

Q ss_pred             CcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          35 NYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        35 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      ...|.|+.|+..|. ...|..|+..+.  .++.|. |+..+ ....|..|+.+|.+++++.|+.|++.|
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v  514 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMV  514 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCcc
Confidence            33789999999986 577899999873  789999 99754 668999999999999999999999864

>PHA00616 hypothetical protein

Probab=98.83  E-value=8.1e-10  Score=48.74  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=20.9

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++|..||+.|...+.+..|++.|+|++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            456666666666666666666666666666554

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.78  E-value=6.4e-09  Score=41.30  Aligned_cols=25  Identities=44%  Similarity=1.113  Sum_probs=22.1

Q ss_pred             HHHHHHHHhhCCCCccCCcCccccc
Q psy3949          52 SMKSHLRKHSGEKPYKCLFCDYHCT   76 (103)
Q Consensus        52 ~l~~h~~~~~~~~~~~c~~c~~~f~   76 (103)
                      +|..|++.|.+++||.|..|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4788999999999999999999885

...

>PHA00732 hypothetical protein

Probab=98.52  E-value=6e-08  Score=48.56  Aligned_cols=46  Identities=28%  Similarity=0.566  Sum_probs=37.0

Q ss_pred             ceecCCCCCCccchhHHHHHHHH-hhCCCCccCCcCcccccCcchhhhhhhhc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRK-HSGEKPYKCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      ||.|..|++.|.....|..|++. |.   ++.|..|++.|.   .+..|.+++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhccc
Confidence            47899999999999999999874 54   358999999987   466777554

>PHA00616 hypothetical protein

Probab=98.46  E-value=7.1e-08  Score=42.59  Aligned_cols=34  Identities=12%  Similarity=0.211  Sum_probs=30.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      ||.|..||+.|...+.|..|++.|++++++.++.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            4789999999999999999999999999887653

>PHA00732 hypothetical protein

Probab=98.30  E-value=8e-07  Score=44.52  Aligned_cols=43  Identities=16%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             CcccCCCcccccccCHHH-HHh-hhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHH
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLS-HTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRK   59 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~-h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   59 (103)
                      |.|..||+.|.+..+|.. +.. |.             ++.|+.|++.|.   .+..|...
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~-------------~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT-------------LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC-------------CCccCCCCCEeC---Chhhhhcc
Confidence            679999999999888888 653 42             347999999886   35666643

>KOG3993|consensus

Probab=98.16  E-value=1.3e-07  Score=59.84  Aligned_cols=24  Identities=21%  Similarity=0.505  Sum_probs=15.3

Q ss_pred             ccCCcCcccccCcchhhhhhhhcc
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      |.|..|++.|....-|..|+.+|+
T Consensus       357 ~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  357 FSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             eecHHhhhhhHHHHHHHHhHHhhh
Confidence            556666666666666666665544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.92  E-value=3.2e-06  Score=32.29  Aligned_cols=22  Identities=23%  Similarity=0.597  Sum_probs=11.3

Q ss_pred             eecCCCCCCccchhHHHHHHHH
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRK   59 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~   59 (103)
                      |.|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            3455555555555555555443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG3993|consensus

Probab=97.90  E-value=7.6e-07  Score=56.57  Aligned_cols=51  Identities=18%  Similarity=0.346  Sum_probs=28.2

Q ss_pred             eecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhc
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      |.|..|...|...-.|.+|.-...-..-|+|..|+++|+-..+|..|.|=|
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWH  318 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWH  318 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhccc
Confidence            556666655555555555543333333456666666666666666665544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.90  E-value=1.1e-05  Score=30.79  Aligned_cols=22  Identities=36%  Similarity=0.803  Sum_probs=15.1

Q ss_pred             ccCCcCcccccCcchhhhhhhh
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      |.|..|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566777777777777777665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.88  E-value=2.5e-05  Score=36.30  Aligned_cols=50  Identities=30%  Similarity=0.525  Sum_probs=33.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHH-hhCC-CCccCCcCcccccCcchhhhhhhhcc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRK-HSGE-KPYKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~-~~~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      .|.|+.|++ ..+...|..|... |..+ +.+.|+.|...+.  .+|.+|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            467888888 4556778888664 5443 4578888876533  37777877654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PRK04860 hypothetical protein; Provisional

Probab=97.85  E-value=7e-06  Score=46.45  Aligned_cols=35  Identities=20%  Similarity=0.402  Sum_probs=27.2

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      +|.|. |+.   ....+.+|.++++++++|.|..|+..|
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l  153 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETL  153 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCcee
Confidence            47776 776   666678888888888888888888764

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.70  E-value=1.4e-05  Score=31.65  Aligned_cols=24  Identities=25%  Similarity=0.575  Sum_probs=13.5

Q ss_pred             CccCCcCcccccCcchhhhhhhhc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      |+.|..|++.|....+|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            345555555565555555555544

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.67  E-value=5.8e-05  Score=35.09  Aligned_cols=48  Identities=23%  Similarity=0.533  Sum_probs=33.1

Q ss_pred             CcccCCCcccccccCHHH--HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHh
Q psy3949           1 VRCQYCKHSLSVSNGFEI--VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKH   60 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~--~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~   60 (103)
                      |.|+.|++.|. ...|..  ...|... +   +     .+.|+.|...+.  ..|..|+..+
T Consensus         3 f~CP~C~~~~~-~~~L~~H~~~~H~~~-~---~-----~v~CPiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    3 FTCPYCGKGFS-ESSLVEHCEDEHRSE-S---K-----NVVCPICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             cCCCCCCCccC-HHHHHHHHHhHCcCC-C---C-----CccCCCchhhhh--hHHHHHHHHh
Confidence            78999999554 445666  5556554 1   2     689999997543  5788887754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.60  E-value=2.8e-05  Score=29.62  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=10.8

Q ss_pred             eecCCCCCCccchhHHHHHHHH
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRK   59 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~   59 (103)
                      |.|+.|+..|.....|..|+..
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            3455555555555555555543

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.50  E-value=0.00013  Score=27.70  Aligned_cols=23  Identities=26%  Similarity=0.703  Sum_probs=15.6

Q ss_pred             ccCCcCcccccCcchhhhhhhhc
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      |.|..|+..|.....|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            46777888888888888777664

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.49  E-value=5.9e-05  Score=34.21  Aligned_cols=32  Identities=38%  Similarity=0.715  Sum_probs=17.4

Q ss_pred             CCCCccCCcCcccccCcchhhhhhhhcccCcc
Q psy3949          62 GEKPYKCLFCDYHCTQSGPLRRHMKIKHLMES   93 (103)
Q Consensus        62 ~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~   93 (103)
                      .+.|..|+.|+..+.++.+|.+|+.+.++.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34566677777777777777777766666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.41  E-value=8.2e-05  Score=29.40  Aligned_cols=25  Identities=24%  Similarity=0.499  Sum_probs=20.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhh
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHS   61 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~   61 (103)
                      ++.|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4789999999999999988887653

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.10  E-value=0.00031  Score=36.32  Aligned_cols=71  Identities=20%  Similarity=0.421  Sum_probs=18.7

Q ss_pred             cccCCCcccccccCHHH-HHh-hhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           2 RCQYCKHSLSVSNGFEI-VLS-HTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         2 ~C~~C~~~f~~~~~l~~-~~~-h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      +|..|+..|.+...+.. +.. |.-.     -     +    . ...+.....+........ ...+.|..|+..|....
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~-----~-----~----~-~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~   64 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFD-----I-----P----D-QKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSRE   64 (100)
T ss_dssp             ----------------------------------------------------------------SSEEBSSSS-EESSHH
T ss_pred             Cccccccccccccccccccccccccc-----c-----c----c-cccccccccccccccccc-CCCCCCCccCCCCcCHH
Confidence            58899999999888777 543 4222     1     1    0 011112222222222111 12578888888888888


Q ss_pred             hhhhhhhhc
Q psy3949          80 PLRRHMKIK   88 (103)
Q Consensus        80 ~l~~h~~~~   88 (103)
                      .|..|++.+
T Consensus        65 ~l~~Hm~~~   73 (100)
T PF12756_consen   65 ALQEHMRSK   73 (100)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHcCc
Confidence            888888763

>smart00355 ZnF_C2H2 zinc finger

Probab=97.06  E-value=0.00034  Score=26.82  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=10.6

Q ss_pred             ecCCCCCCccchhHHHHHHHH
Q psy3949          39 VCYTCPYHTTYSQSMKSHLRK   59 (103)
Q Consensus        39 ~c~~c~~~~~~~~~l~~h~~~   59 (103)
                      .|..|++.|.....+..|+..
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHH
Confidence            345555555555555555443

>PRK04860 hypothetical protein; Provisional

Probab=96.98  E-value=0.00096  Score=37.92  Aligned_cols=40  Identities=25%  Similarity=0.558  Sum_probs=33.8

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      .+|.|. |+.   ....+..|.+++.++++|.|..|+..+....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            569998 987   5677889999999999999999999876543

>smart00355 ZnF_C2H2 zinc finger

Probab=96.91  E-value=0.0011  Score=25.36  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=13.6

Q ss_pred             cCCcCcccccCcchhhhhhhhc
Q psy3949          67 KCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        67 ~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      .|..|++.|.....+..|++.|
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHHh
Confidence            4566666666666666666544

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.63  E-value=0.0028  Score=28.85  Aligned_cols=29  Identities=24%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKP   65 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   65 (103)
                      |-.|++|+..+....+|..|+..+.+.+|
T Consensus        24 PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   24 PATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             -EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            78999999999999999999988877665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.54  E-value=0.0017  Score=24.95  Aligned_cols=21  Identities=33%  Similarity=0.686  Sum_probs=11.0

Q ss_pred             eecCCCCCCccchhHHHHHHH
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      |.|+.|+..|.+...+..|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            345555555555555555544

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.45  E-value=0.0039  Score=32.13  Aligned_cols=25  Identities=20%  Similarity=0.485  Sum_probs=21.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhh
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHS   61 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~   61 (103)
                      .+.|..|+..|.+...|..|+..+.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCcc
Confidence            5899999999999999999998653

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.36  E-value=0.0015  Score=40.82  Aligned_cols=18  Identities=22%  Similarity=0.663  Sum_probs=14.5

Q ss_pred             CcccC--CCcccccccCHHH
Q psy3949           1 VRCQY--CKHSLSVSNGFEI   18 (103)
Q Consensus         1 ~~C~~--C~~~f~~~~~l~~   18 (103)
                      |+|++  |.|++.....|+-
T Consensus       350 ykCpV~gC~K~YknqnGLKY  369 (423)
T COG5189         350 YKCPVEGCNKKYKNQNGLKY  369 (423)
T ss_pred             ecCCCCCchhhhccccchhh
Confidence            56776  8899988888877

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.24  E-value=0.0019  Score=24.62  Aligned_cols=20  Identities=40%  Similarity=0.891  Sum_probs=7.9

Q ss_pred             cCCcCcccccCcchhhhhhhh
Q psy3949          67 KCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        67 ~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      +|..|+.... ...|.+|++.
T Consensus         2 ~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    2 KCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             E-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCcCC-HHHHHHHHHh
Confidence            3444444443 4444444444

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.01  E-value=0.0037  Score=39.14  Aligned_cols=24  Identities=17%  Similarity=0.380  Sum_probs=20.7

Q ss_pred             cceecCC--CCCCccchhHHHHHHHH
Q psy3949          36 YRFVCYT--CPYHTTYSQSMKSHLRK   59 (103)
Q Consensus        36 ~~~~c~~--c~~~~~~~~~l~~h~~~   59 (103)
                      +||.|++  |.+.+.....|.-|+..
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~lh  373 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHMLH  373 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhhc
Confidence            6999998  99999999999888763

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.87  E-value=0.0044  Score=24.37  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=15.3

Q ss_pred             ccCCcCcccccCcchhhhhhhh
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      |-|..|++.|.....+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4567777777777777777654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=95.84  E-value=0.0081  Score=24.90  Aligned_cols=9  Identities=0%  Similarity=-0.411  Sum_probs=4.2

Q ss_pred             ccCCCCCcc
Q psy3949          92 ESSNSHDIT  100 (103)
Q Consensus        92 ~~~~C~~C~  100 (103)
                      .++.|++||
T Consensus        16 ~~~~CP~Cg   24 (33)
T cd00350          16 APWVCPVCG   24 (33)
T ss_pred             CCCcCcCCC
Confidence            344455444

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.20  E-value=0.012  Score=22.75  Aligned_cols=18  Identities=22%  Similarity=0.567  Sum_probs=7.8

Q ss_pred             cCCcCcccccCcchhhhhh
Q psy3949          67 KCLFCDYHCTQSGPLRRHM   85 (103)
Q Consensus        67 ~c~~c~~~f~~~~~l~~h~   85 (103)
                      .|..|++.| ....|.+|+
T Consensus         4 ~C~~CgR~F-~~~~l~~H~   21 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHE   21 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHH
Confidence            344455444 333344443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.23  E-value=0.019  Score=34.26  Aligned_cols=17  Identities=12%  Similarity=0.299  Sum_probs=10.7

Q ss_pred             ceecCCCCCCccchhHH
Q psy3949          37 RFVCYTCPYHTTYSQSM   53 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l   53 (103)
                      ...|+.|+..|......
T Consensus         5 ~~~CPvC~~~F~~~~vr   21 (214)
T PF09986_consen    5 KITCPVCGKEFKTKKVR   21 (214)
T ss_pred             ceECCCCCCeeeeeEEE
Confidence            45677777777665443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.77  E-value=0.024  Score=36.38  Aligned_cols=61  Identities=26%  Similarity=0.579  Sum_probs=49.5

Q ss_pred             ceecCCCCCCccchhHHHHHHH--HhhCC--CCccCC--cCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLR--KHSGE--KPYKCL--FCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~--~~~~~--~~~~c~--~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      ++.+..|...+.....+..|..  .|.++  +++.|.  .|++.|.....+..|..+|++-.+..+.
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            5678888888888888888888  78888  888888  6888888888888888888877665544

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=93.69  E-value=0.13  Score=29.55  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=17.3

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccCccCCCCCcc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDIT  100 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~  100 (103)
                      .|.|.+||..             +.|+.|.+||.||
T Consensus       134 ~~vC~vCGy~-------------~~ge~P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYT-------------HEGEAPEVCPICG  156 (166)
T ss_pred             EEEcCCCCCc-------------ccCCCCCcCCCCC
Confidence            5888888753             4567788888887

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.36  E-value=0.11  Score=21.35  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=17.2

Q ss_pred             ceecCCCCCCccchhHHHHHHH
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      +|.|+.|+..|.....+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            5778888888887777777765

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=93.28  E-value=0.059  Score=25.38  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=19.8

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCccCCCCCcccc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFV  102 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~  102 (103)
                      ..|.|+.||..-.....     +--....+|.|+.||+.
T Consensus        26 v~F~CPnCGe~~I~Rc~-----~CRk~g~~Y~Cp~CGF~   59 (61)
T COG2888          26 VKFPCPNCGEVEIYRCA-----KCRKLGNPYRCPKCGFE   59 (61)
T ss_pred             eEeeCCCCCceeeehhh-----hHHHcCCceECCCcCcc
Confidence            45778878754433322     11122367999999874

>KOG2893|consensus

Probab=93.02  E-value=0.032  Score=33.76  Aligned_cols=45  Identities=20%  Similarity=0.431  Sum_probs=34.5

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhh
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHM   85 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~   85 (103)
                      ++| |=.|++.|.....|.+|+.    .+-|+|.+|-+...+.-.|..|.
T Consensus        10 kpw-cwycnrefddekiliqhqk----akhfkchichkkl~sgpglsihc   54 (341)
T KOG2893|consen   10 KPW-CWYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIHC   54 (341)
T ss_pred             Cce-eeecccccchhhhhhhhhh----hccceeeeehhhhccCCCceeeh
Confidence            366 6678999998888888776    56789999987766666777663

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=92.69  E-value=0.12  Score=29.50  Aligned_cols=30  Identities=7%  Similarity=-0.068  Sum_probs=19.2

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCccCCCCCcccc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFV  102 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~  102 (103)
                      .-|.|+.|+..|+...++.         .-|.|+.||.+
T Consensus       108 ~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~  137 (158)
T TIGR00373       108 MFFICPNMCVRFTFNEAME---------LNFTCPRCGAM  137 (158)
T ss_pred             CeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence            3467777777776666653         24777777754

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.21  E-value=0.15  Score=21.26  Aligned_cols=10  Identities=40%  Similarity=0.962  Sum_probs=5.8

Q ss_pred             ceecCCCCCC
Q psy3949          37 RFVCYTCPYH   46 (103)
Q Consensus        37 ~~~c~~c~~~   46 (103)
                      .|.|..||..
T Consensus         2 ~~~C~~CG~i   11 (34)
T cd00729           2 VWVCPVCGYI   11 (34)
T ss_pred             eEECCCCCCE
Confidence            3566666654

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=91.96  E-value=0.17  Score=29.43  Aligned_cols=29  Identities=10%  Similarity=0.103  Sum_probs=18.1

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccCccCCCCCcccc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFV  102 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~  102 (103)
                      -|.|+.|+..|+...++.         .-|.|+.||-.
T Consensus       117 ~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~  145 (178)
T PRK06266        117 FFFCPNCHIRFTFDEAME---------YGFRCPQCGEM  145 (178)
T ss_pred             EEECCCCCcEEeHHHHhh---------cCCcCCCCCCC
Confidence            466777777666665542         24777777754

>KOG2893|consensus

Probab=91.67  E-value=0.11  Score=31.59  Aligned_cols=42  Identities=21%  Similarity=0.540  Sum_probs=25.4

Q ss_pred             ccCCCcccccccCHHHHHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHH
Q psy3949           3 CQYCKHSLSVSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHL   57 (103)
Q Consensus         3 C~~C~~~f~~~~~l~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~   57 (103)
                      |=.|+..|....-   +..|...     +     .|.|-+|-+.+.+.-.|.+|.
T Consensus        13 cwycnrefddeki---liqhqka-----k-----hfkchichkkl~sgpglsihc   54 (341)
T KOG2893|consen   13 CWYCNREFDDEKI---LIQHQKA-----K-----HFKCHICHKKLFSGPGLSIHC   54 (341)
T ss_pred             eeecccccchhhh---hhhhhhh-----c-----cceeeeehhhhccCCCceeeh
Confidence            4456666654311   3445556     6     778888777666666666664

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=91.49  E-value=0.086  Score=29.93  Aligned_cols=13  Identities=31%  Similarity=0.554  Sum_probs=7.4

Q ss_pred             ccCCcCcccccCc
Q psy3949          66 YKCLFCDYHCTQS   78 (103)
Q Consensus        66 ~~c~~c~~~f~~~   78 (103)
                      ++|..||.+|...
T Consensus        29 ~~c~~c~~~f~~~   41 (154)
T PRK00464         29 RECLACGKRFTTF   41 (154)
T ss_pred             eeccccCCcceEe
Confidence            5566666665543

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=91.39  E-value=0.12  Score=21.89  Aligned_cols=33  Identities=15%  Similarity=0.372  Sum_probs=18.8

Q ss_pred             eecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccc
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC   75 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   75 (103)
                      ..|+.|+..|.....-     ...+.....|..|+..|
T Consensus         3 i~CP~C~~~f~v~~~~-----l~~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDK-----LPAGGRKVRCPKCGHVF   35 (37)
T ss_pred             EECCCCCceEEcCHHH-----cccCCcEEECCCCCcEe
Confidence            4677777766654431     22333456777776655

>smart00531 TFIIE Transcription initiation factor IIE

Probab=91.31  E-value=0.14  Score=28.74  Aligned_cols=35  Identities=14%  Similarity=0.053  Sum_probs=19.2

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCccCCCCCcccc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFV  102 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~  102 (103)
                      .-|.|+.|+..|....++...   . .+..|.|+.||..
T Consensus        98 ~~Y~Cp~C~~~y~~~ea~~~~---d-~~~~f~Cp~Cg~~  132 (147)
T smart00531       98 AYYKCPNCQSKYTFLEANQLL---D-MDGTFTCPRCGEE  132 (147)
T ss_pred             cEEECcCCCCEeeHHHHHHhc---C-CCCcEECCCCCCE
Confidence            346777777777654443210   1 1223777777754

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=91.30  E-value=0.15  Score=23.99  Aligned_cols=34  Identities=12%  Similarity=0.123  Sum_probs=18.9

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCccCCCCCcccc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFV  102 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~  102 (103)
                      ..|.|+.||..-...-.     +--....+|.|+.||+.
T Consensus        24 ~~F~CPnCG~~~I~RC~-----~CRk~~~~Y~CP~CGF~   57 (59)
T PRK14890         24 VKFLCPNCGEVIIYRCE-----KCRKQSNPYTCPKCGFE   57 (59)
T ss_pred             CEeeCCCCCCeeEeech-----hHHhcCCceECCCCCCc
Confidence            35777777765222211     11112257999999974

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=91.07  E-value=0.19  Score=26.80  Aligned_cols=30  Identities=17%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             eecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCc
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQS   78 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~   78 (103)
                      ..|+.||..|.-.           +..|..|++||..|...
T Consensus        10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence            4899999988642           24688899999988766

The function of members of this family is unknown.

>TIGR00622 ssl1 transcription factor ssl1

Probab=91.01  E-value=0.4  Score=25.77  Aligned_cols=18  Identities=17%  Similarity=0.320  Sum_probs=9.0

Q ss_pred             ceecCCCCCCccchhHHH
Q psy3949          37 RFVCYTCPYHTTYSQSMK   54 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~   54 (103)
                      |-.|+.||....++.+|.
T Consensus        15 P~~CpiCgLtLVss~HLA   32 (112)
T TIGR00622        15 PVECPICGLTLILSTHLA   32 (112)
T ss_pred             CCcCCcCCCEEeccchHH
Confidence            344555555555544443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=90.79  E-value=0.28  Score=20.69  Aligned_cols=12  Identities=17%  Similarity=0.456  Sum_probs=5.9

Q ss_pred             ecCCCCCCccch
Q psy3949          39 VCYTCPYHTTYS   50 (103)
Q Consensus        39 ~c~~c~~~~~~~   50 (103)
                      .|+.|+..|...
T Consensus         4 ~Cp~C~~~y~i~   15 (36)
T PF13717_consen    4 TCPNCQAKYEID   15 (36)
T ss_pred             ECCCCCCEEeCC
Confidence            455555544433

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=90.72  E-value=0.11  Score=26.41  Aligned_cols=13  Identities=23%  Similarity=0.498  Sum_probs=7.1

Q ss_pred             CCccCCcCccccc
Q psy3949          64 KPYKCLFCDYHCT   76 (103)
Q Consensus        64 ~~~~c~~c~~~f~   76 (103)
                      ..|.|..|+..|.
T Consensus        52 GIW~C~kCg~~fA   64 (89)
T COG1997          52 GIWKCRKCGAKFA   64 (89)
T ss_pred             CeEEcCCCCCeec
Confidence            3456666665553

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=90.59  E-value=0.13  Score=21.74  Aligned_cols=33  Identities=15%  Similarity=0.225  Sum_probs=16.4

Q ss_pred             eecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccc
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC   75 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   75 (103)
                      ..|+.|+..|.......     ........|..|+..|
T Consensus         3 ~~CP~C~~~~~v~~~~~-----~~~~~~v~C~~C~~~~   35 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQL-----GANGGKVRCGKCGHVW   35 (38)
T ss_pred             EECCCCCCEEEeCHHHc-----CCCCCEEECCCCCCEE
Confidence            46777776665443321     1111235666666554

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=90.21  E-value=0.12  Score=19.83  Aligned_cols=10  Identities=10%  Similarity=0.029  Sum_probs=7.0

Q ss_pred             ccCCCCCccc
Q psy3949          92 ESSNSHDITF  101 (103)
Q Consensus        92 ~~~~C~~C~~  101 (103)
                      -+|.|+.||+
T Consensus        15 v~f~CPnCG~   24 (24)
T PF07754_consen   15 VPFPCPNCGF   24 (24)
T ss_pred             ceEeCCCCCC
Confidence            3577888875

It is likely to bind zinc via its four well-conserved cysteine residues.

>KOG2186|consensus

Probab=89.88  E-value=0.19  Score=30.76  Aligned_cols=46  Identities=20%  Similarity=0.496  Sum_probs=21.5

Q ss_pred             eecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhh
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK   86 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~   86 (103)
                      |.|..||....... +..|+..-.+ .-|.|..|+..|.. ..+..|.+
T Consensus         4 FtCnvCgEsvKKp~-vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQ-VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhhhccccc-hHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            45555555444332 2334443333 34555555555554 34444443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=89.68  E-value=0.21  Score=32.12  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=35.5

Q ss_pred             CCccCCcCcccccCcchhhhhhh--hcccC--ccCCCC--CccccC
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMK--IKHLM--ESSNSH--DITFVM  103 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~--~~~~e--~~~~C~--~C~~~~  103 (103)
                      .++.|..|...|.....+..|.+  .|.++  +++.|+  .|++.|
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~  333 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLF  333 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccc
Confidence            36778889999999999999999  89999  999999  788765

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=89.48  E-value=0.2  Score=19.58  Aligned_cols=9  Identities=0%  Similarity=-0.075  Sum_probs=5.7

Q ss_pred             CCCCccccC
Q psy3949          95 NSHDITFVM  103 (103)
Q Consensus        95 ~C~~C~~~~  103 (103)
                      .|+.||+.|
T Consensus        16 ~Cp~CG~~F   24 (26)
T PF10571_consen   16 FCPHCGYDF   24 (26)
T ss_pred             cCCCCCCCC
Confidence            466666665

Several members are annotated as putative helicases.

>KOG2186|consensus

Probab=89.35  E-value=0.14  Score=31.25  Aligned_cols=37  Identities=14%  Similarity=0.210  Sum_probs=29.6

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .|.|..||-...-+ .+.+|+...++ .-|.|-.|+++|
T Consensus         3 ~FtCnvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F   39 (276)
T KOG2186|consen    3 FFTCNVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTF   39 (276)
T ss_pred             EEehhhhhhhcccc-chHHHHHhccC-CeeEEeeccccc
Confidence            47788898765554 56779988777 779999999998

>PHA00626 hypothetical protein

Probab=89.19  E-value=0.15  Score=23.76  Aligned_cols=12  Identities=8%  Similarity=0.011  Sum_probs=9.6

Q ss_pred             ccCCCCCccccC
Q psy3949          92 ESSNSHDITFVM  103 (103)
Q Consensus        92 ~~~~C~~C~~~~  103 (103)
                      ..|+|+.||+.|
T Consensus        22 nrYkCkdCGY~f   33 (59)
T PHA00626         22 DDYVCCDCGYND   33 (59)
T ss_pred             cceEcCCCCCee
Confidence            468899998876

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=88.40  E-value=0.31  Score=22.13  Aligned_cols=31  Identities=23%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcc
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDY   73 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~   73 (103)
                      +.|.|..||..|......      .. ..+..|+.|+.
T Consensus         4 Yey~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~   34 (52)
T TIGR02605         4 YEYRCTACGHRFEVLQKM------SD-DPLATCPECGG   34 (52)
T ss_pred             EEEEeCCCCCEeEEEEec------CC-CCCCCCCCCCC
Confidence            468999999888754322      11 34567888885

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=88.31  E-value=0.33  Score=20.71  Aligned_cols=31  Identities=19%  Similarity=0.412  Sum_probs=17.6

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcc
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDY   73 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~   73 (103)
                      +.|.|..||..|......      .. .....|+.|+.
T Consensus         4 Y~y~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~   34 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKI------SD-DPLATCPECGG   34 (41)
T ss_pred             EEEEcCCCCCEEEEEEec------CC-CCCCCCCCCCC
Confidence            357788888776543322      11 23456777765

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=88.06  E-value=0.34  Score=21.13  Aligned_cols=31  Identities=26%  Similarity=0.582  Sum_probs=18.0

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcc
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDY   73 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~   73 (103)
                      +.|.|..||..|......      .. ..+..|+.|+.
T Consensus         4 Yey~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~   34 (42)
T PF09723_consen    4 YEYRCEECGHEFEVLQSI------SE-DDPVPCPECGS   34 (42)
T ss_pred             EEEEeCCCCCEEEEEEEc------CC-CCCCcCCCCCC
Confidence            457788887776643321      11 34556777765

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=87.02  E-value=0.37  Score=21.38  Aligned_cols=29  Identities=17%  Similarity=0.622  Sum_probs=18.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC   75 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   75 (103)
                      .|.|+.||..+.....          ...+.|+.||..+
T Consensus         3 ~y~C~~CG~~~~~~~~----------~~~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVELDEY----------GTGVRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEECCC----------CCceECCCCCCeE
Confidence            6788888876654221          1257788887644

>PF15135 UPF0515: Uncharacterised protein UPF0515

Probab=86.16  E-value=1.3  Score=27.26  Aligned_cols=59  Identities=12%  Similarity=0.152  Sum_probs=32.0

Q ss_pred             CCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          32 PDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        32 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      |+..+.|.|..|+..+-        .+.......-.|..|.+.|.....     ....|---|.|+.|+.+|
T Consensus       107 p~~drqFaC~~Cd~~Ww--------Rrvp~rKeVSRCr~C~~rYDPVP~-----dkmwG~aef~C~~C~h~F  165 (278)
T PF15135_consen  107 PSVDRQFACSSCDHMWW--------RRVPQRKEVSRCRKCRKRYDPVPC-----DKMWGIAEFHCPKCRHNF  165 (278)
T ss_pred             cccceeeeccccchHHH--------hccCcccccccccccccccCCCcc-----ccccceeeeecccccccc
Confidence            44555889998864321        122222223457777766543321     112344457888888776

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=85.74  E-value=0.25  Score=22.98  Aligned_cols=22  Identities=14%  Similarity=0.242  Sum_probs=12.5

Q ss_pred             ceecCCCCCCccchhHHHHHHH
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      -+.|+.|+..|........|.-
T Consensus        17 ~lrCPRC~~~FR~~K~Y~RHVN   38 (65)
T COG4049          17 FLRCPRCGMVFRRRKDYIRHVN   38 (65)
T ss_pred             eeeCCchhHHHHHhHHHHHHhh
Confidence            4566666666665555555543

>KOG1146|consensus

Probab=85.50  E-value=0.3  Score=36.50  Aligned_cols=51  Identities=33%  Similarity=0.757  Sum_probs=37.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHH-hh------------------------CCCCccCCcCcccccCcchhhhhhhh
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRK-HS------------------------GEKPYKCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~-~~------------------------~~~~~~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      .+.|+.|+..+.....|..|++. |.                        +.+++.|..|...+....+|.+|+..
T Consensus       465 t~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  465 TLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             cccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence            68888899888888888888875 21                        13466777777777777777777653

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=85.30  E-value=1.5  Score=25.03  Aligned_cols=30  Identities=20%  Similarity=0.453  Sum_probs=24.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC   75 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   75 (103)
                      -|.|+.|+..|....++.         .-|.|+.||...
T Consensus       109 ~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L  138 (158)
T TIGR00373       109 FFICPNMCVRFTFNEAME---------LNFTCPRCGAML  138 (158)
T ss_pred             eEECCCCCcEeeHHHHHH---------cCCcCCCCCCEe
Confidence            799999999988877763         369999999754

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=85.18  E-value=0.84  Score=25.08  Aligned_cols=33  Identities=9%  Similarity=0.077  Sum_probs=24.5

Q ss_pred             eecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchh
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPL   81 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l   81 (103)
                      ..|+.||..|.-           .+..|..|++||..+.....+
T Consensus        10 r~Cp~cg~kFYD-----------Lnk~p~vcP~cg~~~~~~~~~   42 (129)
T TIGR02300        10 RICPNTGSKFYD-----------LNRRPAVSPYTGEQFPPEEAL   42 (129)
T ss_pred             ccCCCcCccccc-----------cCCCCccCCCcCCccCcchhh
Confidence            589999998864           234689999999987655333

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]

Probab=84.66  E-value=0.84  Score=23.52  Aligned_cols=27  Identities=15%  Similarity=0.461  Sum_probs=17.1

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCccCCCCCcc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDIT  100 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~  100 (103)
                      +|..|..||..|....          -.+|..|+.|-
T Consensus        57 ~Pa~CkkCGfef~~~~----------ik~pSRCP~CK   83 (97)
T COG3357          57 RPARCKKCGFEFRDDK----------IKKPSRCPKCK   83 (97)
T ss_pred             cChhhcccCccccccc----------cCCcccCCcch
Confidence            4667888887776521          23567777763

>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=83.63  E-value=0.26  Score=34.53  Aligned_cols=55  Identities=18%  Similarity=0.304  Sum_probs=32.1

Q ss_pred             ecCCCCCCccchhHHHHHHHHhhCCCCc-cCCcCcccccCcchhhhhhhhcccCccCCCCCcc
Q psy3949          39 VCYTCPYHTTYSQSMKSHLRKHSGEKPY-KCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDIT  100 (103)
Q Consensus        39 ~c~~c~~~~~~~~~l~~h~~~~~~~~~~-~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~  100 (103)
                      .|-.||-+|.....| ...+.++..+.| .|+.|.+-+..+.+..-|    .  .|-.|+.||
T Consensus       125 ~CT~CGPRfTIi~al-PYDR~nTsM~~F~lC~~C~~EY~dP~nRRfH----A--Qp~aCp~CG  180 (750)
T COG0068         125 NCTNCGPRFTIIEAL-PYDRENTSMADFPLCPFCDKEYKDPLNRRFH----A--QPIACPKCG  180 (750)
T ss_pred             ccCCCCcceeeeccC-CCCcccCccccCcCCHHHHHHhcCccccccc----c--ccccCcccC
Confidence            566788777766554 222334444443 577777766666553322    2  467788887

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=83.36  E-value=0.62  Score=21.17  Aligned_cols=28  Identities=14%  Similarity=0.580  Sum_probs=17.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCccc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYH   74 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~   74 (103)
                      .|.|..||+.+..          ........|+.||..
T Consensus         6 ~Y~C~~Cg~~~~~----------~~~~~~irCp~Cg~r   33 (49)
T COG1996           6 EYKCARCGREVEL----------DQETRGIRCPYCGSR   33 (49)
T ss_pred             EEEhhhcCCeeeh----------hhccCceeCCCCCcE
Confidence            6888888877621          112345677778753

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=82.69  E-value=1.6  Score=19.31  Aligned_cols=27  Identities=19%  Similarity=0.603  Sum_probs=15.9

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCccc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYH   74 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~   74 (103)
                      .|.|..||..+...           ...+..|..||..
T Consensus         2 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~r   28 (44)
T smart00659        2 IYICGECGRENEIK-----------SKDVVRCRECGYR   28 (44)
T ss_pred             EEECCCCCCEeecC-----------CCCceECCCCCce
Confidence            46777777655432           2235677777753

present in RNA polymerase I, II and III

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=81.15  E-value=0.74  Score=22.73  Aligned_cols=42  Identities=14%  Similarity=0.177  Sum_probs=23.2

Q ss_pred             ecCCCCCCccchhHHHHHHHHhhCCCCccCC--cCcccccCcchhh
Q psy3949          39 VCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL--FCDYHCTQSGPLR   82 (103)
Q Consensus        39 ~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~f~~~~~l~   82 (103)
                      .|+.||.......+-....  ...+.-+.|.  .||..|.....+.
T Consensus         3 ~CP~Cg~~a~irtSr~~s~--~~~~~Y~qC~N~eCg~tF~t~es~s   46 (72)
T PRK09678          3 HCPLCQHAAHARTSRYITD--TTKERYHQCQNVNCSATFITYESVQ   46 (72)
T ss_pred             cCCCCCCccEEEEChhcCh--hhheeeeecCCCCCCCEEEEEEEEE
Confidence            5888886553333222111  1334456776  7888887655544

>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []

Probab=81.14  E-value=1.7  Score=19.53  Aligned_cols=7  Identities=0%  Similarity=-0.548  Sum_probs=3.4

Q ss_pred             CCCCCcc
Q psy3949          94 SNSHDIT  100 (103)
Q Consensus        94 ~~C~~C~  100 (103)
                      |.|++|+
T Consensus        35 w~CP~C~   41 (47)
T PF00301_consen   35 WVCPVCG   41 (47)
T ss_dssp             -B-TTTS
T ss_pred             CcCcCCC
Confidence            6677775

The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....

>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.70  E-value=0.85  Score=18.15  Aligned_cols=19  Identities=16%  Similarity=0.513  Sum_probs=8.1

Q ss_pred             cCCcCcccccCcchhhhhhh
Q psy3949          67 KCLFCDYHCTQSGPLRRHMK   86 (103)
Q Consensus        67 ~c~~c~~~f~~~~~l~~h~~   86 (103)
                      .|..|++.| .......|.+
T Consensus         2 sCiDC~~~F-~~~~y~~Ht~   20 (28)
T PF08790_consen    2 SCIDCSKDF-DGDSYKSHTS   20 (28)
T ss_dssp             EETTTTEEE-EGGGTTT---
T ss_pred             eeecCCCCc-CcCCcCCCCc
Confidence            455566666 3334444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.

>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center

Probab=80.55  E-value=1.6  Score=19.91  Aligned_cols=8  Identities=0%  Similarity=-0.459  Sum_probs=4.9

Q ss_pred             cCCCCCcc
Q psy3949          93 SSNSHDIT  100 (103)
Q Consensus        93 ~~~C~~C~  100 (103)
                      .|.|++|+
T Consensus        34 ~w~CP~C~   41 (50)
T cd00730          34 DWVCPVCG   41 (50)
T ss_pred             CCCCCCCC
Confidence            36666665

Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.

>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.33  E-value=1.1  Score=19.67  Aligned_cols=9  Identities=0%  Similarity=-0.451  Sum_probs=6.1

Q ss_pred             CCCCccccC
Q psy3949          95 NSHDITFVM  103 (103)
Q Consensus        95 ~C~~C~~~~  103 (103)
                      .|.+||..|
T Consensus        10 ~C~~C~rpf   18 (42)
T PF10013_consen   10 ICPVCGRPF   18 (42)
T ss_pred             cCcccCCcc
Confidence            377777765

>TIGR00280 L37a ribosomal protein L37a

Probab=80.19  E-value=0.59  Score=24.13  Aligned_cols=11  Identities=18%  Similarity=0.510  Sum_probs=5.6

Q ss_pred             CccCCcCcccc
Q psy3949          65 PYKCLFCDYHC   75 (103)
Q Consensus        65 ~~~c~~c~~~f   75 (103)
                      .|.|..|++.|
T Consensus        53 IW~C~~C~~~~   63 (91)
T TIGR00280        53 IWTCRKCGAKF   63 (91)
T ss_pred             EEEcCCCCCEE
Confidence            45555555544

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		3e-05
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		5e-05
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		1e-04
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		2e-04
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		5e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		5e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		6e-04
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		6e-04
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		6e-04
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		6e-04

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 53 MKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
          +  HLR H+GEKPYKC FC+Y   Q   LR H++  H
Sbjct: 20 LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
          F C  C  + + S  + +H+R H+GEKP+ C  C     +S   +RH  I+H++
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL 57

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
          + C TC Y    S S+  HLR HS E+P+KC  C Y    S  L  H++
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 30 SRPDHNYRFVCY----TCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRR 83
          S PD   R + Y     C    T S  +K+HLR H+GEKPYKC +  CD+   +S  L R
Sbjct: 6  SGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTR 65
Query: 84 HMK 86
          H +
Sbjct: 66 HYR 68

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          F C  C  + + S  + +H+R H+GEKP+ C  C     +S   +RH KI
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
          F C  C  + + S  + +H+R H+GEKP+ C  C     +S   +RH KI HL +  
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQKD 90

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          F C  C  + + S  + +H+R H+GEKP+ C  C     +S   +RH KI
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
          F C  C  + + S  + +H+R H+GEKP+ C  C     +S   +RH KI HL +  
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQKD 90

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          F C  C  + + S  + +H+R H+GEKP+ C  C     +S   +RH KI
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          F C  C  + + S  + +H+R H+GEKP+ C  C     +S   +RH KI
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          F C  C  + + S  + +H+R H+GEKP+ C  C     +S   +RH KI
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	8e-11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-07
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	7e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-05
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	2e-05
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-05
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	4e-05
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	5e-05
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-05
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	8e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	2e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	3e-04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	9e-04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-04
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	4e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	5e-04
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	5e-04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	5e-04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	5e-04
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	5e-04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-04
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-04
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	8e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	8e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	8e-04
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-04

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 52.1 bits (126), Expect = 8e-11
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          C  C Y  +   +++ H R H  ++P+KC +C +   Q   L +HMK 
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 44.0 bits (105), Expect = 1e-07
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
             S   P KC  C Y C+    LR H +I
Sbjct: 2  SSGSSGHPEKCSECSYSCSSKAALRIHERI 31

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.4 bits (119), Expect = 1e-09
 Identities = 19/38 (50%), Positives = 23/38 (60%)

Query: 52 SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
          S  S  R HSGEKPY+C  C    TQSG ++ H+  KH
Sbjct: 2  SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH 39

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.8 bits (107), Expect = 6e-08
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGE--KPYKCLFCDYHCTQSGPLRRHMKIKH 89
          + CY C    T S +MK H+ +   E    + C  CD    +   L  H++ +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.4 bits (113), Expect = 8e-09
 Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 38 FVCYTCPYHTTYSQSMKSHLRKHS---GEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
            C  C +      S+  H RKH+       + C FC     +   +  H    H
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.2 bits (89), Expect = 2e-05
 Identities = 8/28 (28%), Positives = 11/28 (39%)

Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
           SG    +C  C + C Q   L  H + 
Sbjct: 2  SSGSSGLQCEICGFTCRQKASLNWHQRK 29

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 44.4 bits (106), Expect = 2e-07
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S  + +H+R H+GEKP+ C  C     +S   +RH KI
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 40.9 bits (97), Expect = 3e-06
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          Y CP  +    +SQS  +  H+R H+G+KP++C  C  + ++S  L  H++ 
Sbjct: 5  YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 43.2 bits (101), Expect = 2e-07
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          +++C  C         +K H+R H+  +PY C +C++     G L +HMK 
Sbjct: 1  KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 42.5 bits (101), Expect = 1e-06
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S  +K H R+H+G KP++C  C    ++S  L+ H + 
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 39.0 bits (92), Expect = 3e-05
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
          + C Y      Y +   ++ H RKH+GEKPY+C F  C+   ++S  L+RH + 
Sbjct: 7  FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 38.7 bits (91), Expect = 3e-05
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 38  FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
           F C TC    + S  +K+H R H+GEKP+ C +  C     +S  L RH  +
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 41.6 bits (99), Expect = 2e-06
 Identities = 20/48 (41%), Positives = 25/48 (52%)

Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          C TC Y    S S+  HLR HS E+P+KC  C Y    S  L  H++ 
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS 86

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 40.1 bits (95), Expect = 6e-06
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          +    +K+H+R H+G KPYKC  CDY    S  L +H++I
Sbjct: 19 SRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.5 bits (98), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S  +  H RKH+G KP++C  C+   ++S  L  HMK 
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 40.3 bits (95), Expect = 7e-06
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 7/54 (12%)

Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
          + C Y      Y++S  +K+HLR H+GEKPYKC    CD+   +S  L RH + 
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 40.6 bits (96), Expect = 4e-06
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          F C  C  + + S  + +H+R H+GEKP+ C  C     +S   +RH  I
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 40.2 bits (95), Expect = 4e-06
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 38 FVCYTCPYHTTYSQSMKSHLR--KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
          + C  C    T+  +   H         K Y C FC    T+   +  H+KI H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 35.2 bits (82), Expect = 3e-04
 Identities = 9/32 (28%), Positives = 10/32 (31%)

Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
              GE  Y+C  C    T      RH    H
Sbjct: 3  FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.4 bits (93), Expect = 4e-06
 Identities = 13/32 (40%), Positives = 14/32 (43%)

Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
                GEKPYKC  C     Q   LR H+ I
Sbjct: 2  SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.4 bits (93), Expect = 1e-05
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S  +  H RKH+G +P++C  CD   ++S  L  HMK 
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 38.3 bits (90), Expect = 3e-05
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 4/44 (9%)

Query: 48 TYSQS--MKSHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
          TY++S  +K+HLR H+GEKPY C    C +   +S  L RH + 
Sbjct: 16 TYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.8 bits (91), Expect = 1e-05
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S  +  H+R H+G+KP++C  C  + ++S  L  H++ 
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S      GEK +KC  CD   +Q+  LR H  +
Sbjct: 2  SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNV 34

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 38.6 bits (91), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
           Y  ++ SH   H+GEKPY+C  C     +   L+ H +I
Sbjct: 28 RYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 37.8 bits (89), Expect = 3e-05
 Identities = 10/38 (26%), Positives = 12/38 (31%)

Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
                H      +KPYKC  C       G L  H  +
Sbjct: 2  GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV 39

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
          + C +     TY +S  +K+H R H+GEKP+ C +  C+    +S  L RH + 
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 38.2 bits (90), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 25/52 (48%)

Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
          FVC  C       + +K H R H+ EKPY C  C+   T+   L RH +  H
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
            CP+         + +M+ HL  H G + + C  C     +S  L+RH  +
Sbjct: 6  IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV 56

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 37.5 bits (88), Expect = 9e-05
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
           VC  C      S  +K H   H+GEKP++C F  C    +    LR H++I
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 41  YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
           + C +       +   ++++H+R H+G++PY C F  C+    QS  L+ H+  
Sbjct: 63  FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 55 SHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
          S     +GEKP+ C    C +  ++S  L RH + 
Sbjct: 2  SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 16/36 (44%), Positives = 17/36 (47%)

Query: 52 SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S  S  R H+GEKPY C  CD    Q   L  H K 
Sbjct: 2  SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR 37

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C    T    LR H K 
Sbjct: 2  SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC 34

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 39.3 bits (93), Expect = 4e-05
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          +  + +  H R H+GEKPYKC  C    +Q   LR H + 
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 38.6 bits (91), Expect = 6e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 48  TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
           +    +++H R H+GEKPYKC  C    ++   L  H + 
Sbjct: 116 SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT 155

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 38.2 bits (90), Expect = 9e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 48  TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
           +   ++ +H R H+GEKPYKC  C    ++   L  H + 
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 48  TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
           +   ++++H R H+GEKPY C  C    +Q   LR H + 
Sbjct: 88  SQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          + S  +  H R H+GEKPYKC  C    +    L RH + 
Sbjct: 32 SRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
            S S  +      GEKPY C  C    ++S  L  H + 
Sbjct: 4  FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT 43

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 38.0 bits (89), Expect = 4e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
               +K H   H+ + PY+C    CD   +    L+RH K+
Sbjct: 14 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 36.7 bits (86), Expect = 5e-05
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
                 GEKPY C  C         L+ H++I
Sbjct: 1  GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 8e-05
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPY+C  C    T    L  H KI
Sbjct: 2  SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI 34

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     SGEKP+KC  C    TQ+  L  H ++
Sbjct: 2  SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV 34

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 37.0 bits (87), Expect = 1e-04
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S            +K + C FC  H T+S  L  H + 
Sbjct: 2  SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT 39

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 34.7 bits (81), Expect = 8e-04
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          T S ++  H R H+ E+PY C  C     +   LR H  I
Sbjct: 28 TKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 41  YTCPYHT---TYSQS--MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKIKH 89
           + C +     +YS+   +K+HLR H+GEKPY C    C    + +    +H    H
Sbjct: 68  HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 50 SQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
             +  H+R+H+GEKP+KC F  C    ++   L+ H++ 
Sbjct: 52 QYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 8/55 (14%)

Query: 41  YTCPYHT-----TYSQSMKSH-LRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
           Y C +       + +     H  R HS EKPY C    C    T    LR+H+K 
Sbjct: 98  YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
               +K H RKH+GEKP++C  C     +   L  H  
Sbjct: 18 LSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA 56

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 36.7 bits (86), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 48  TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
                ++ H+  H+GE PYKC  C     Q   L+ HM   H   SS
Sbjct: 77  RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 35.6 bits (83), Expect = 6e-04
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 7/43 (16%)

Query: 52 SMKSHLRKH-------SGEKPYKCLFCDYHCTQSGPLRRHMKI 87
            K +L +H         E+ + C  C     +   LR HM  
Sbjct: 46 FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS 88

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C    T+   L  H + 
Sbjct: 2  SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS 34

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C         L  H K+
Sbjct: 2  SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV 34

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
               +  H   HSGEKPY C  C     +   +  H++ 
Sbjct: 18 RDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 35.6 bits (83), Expect = 1e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +G  PYKC  C+   +    L  H ++
Sbjct: 2  SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM 34

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 35.2 bits (82), Expect = 2e-04
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
                GEKPY+C  C    +Q G L  H+++
Sbjct: 2  SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 2e-04
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C    TQ+  L  H +I
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI 34

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 41  YTCPYHT---TYSQS--MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
           + CP+      +++S  +K H R H+GEKP+KC F  CD     S   ++HM +
Sbjct: 91  FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     SGEKPYKC+ C     +   L  H ++
Sbjct: 2  SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV 34

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.2 bits (82), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C         L  H  +
Sbjct: 2  SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV 34

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     S EKPYKC  C     +   L  H ++
Sbjct: 2  SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV 34

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.9 bits (81), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKP++C  C  + + S  L +H++ 
Sbjct: 2  SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKP+KC  C         L RH  +
Sbjct: 2  SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV 34

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GE+PY C  C    T    L +H KI
Sbjct: 2  SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI 34

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKP+KC+ C    ++   L  H K+
Sbjct: 2  SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL 34

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 35.5 bits (83), Expect = 3e-04
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
               MK H   H+GEKP+KC  C    +QS  L  H + 
Sbjct: 40 HQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 34.7 bits (81), Expect = 5e-04
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          HL  HS  +PY C +C     Q   +++H  I
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 34.6 bits (80), Expect = 3e-04
 Identities = 11/32 (34%), Positives = 12/32 (37%)

Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
                GE PY C  C    TQ G L  H + 
Sbjct: 2  SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS 33

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPY C  C    T    L +H KI
Sbjct: 2  SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI 34

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +G+K +KC  C    TQS  L  H +I
Sbjct: 2  SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI 34

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 3e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     SGEKP+KC  C     Q+  L  H++I
Sbjct: 2  SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI 34

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 35.9 bits (84), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          T+      H+  H G +PY C  C         L  HMKI
Sbjct: 20 THKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 48  TYSQSMKSHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
                +K H   H+ + PY+C    CD   +    L+RH K+
Sbjct: 117 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 158

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 36.0 bits (84), Expect = 5e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 48 TYSQSMKSHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKIKH 89
          T    +  H   H+GEK + C    CD   T    +++H    H
Sbjct: 55 TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 35.6 bits (83), Expect = 9e-04
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 48 TYSQSMKSHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
            +  +++HL KH+GEKP+ C    C+   T    L RH   
Sbjct: 25 NKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 34.5 bits (80), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     SGEKP+KC  C      +     H + 
Sbjct: 2  SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS 34

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 35.1 bits (82), Expect = 4e-04
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S S      +    + YKC  C    + S  L +H + 
Sbjct: 3  SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 40

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPY C  C     Q   L RH +I
Sbjct: 2  SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRI 34

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S      GEK YKC  C    +QS  L+ H ++
Sbjct: 2  SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV 34

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 34.5 bits (80), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPY C  C      +  L +H ++
Sbjct: 2  SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV 34

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     SGEKPYKC  C    TQ+  L  H +I
Sbjct: 2  SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI 34

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     SGEKP++C  C    TQ+  L  H ++
Sbjct: 2  SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV 34

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 34.1 bits (79), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +G+KP++C  C       G L  H +I
Sbjct: 2  SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI 34

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPY+C  C     Q   L +H +I
Sbjct: 2  SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI 34

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 5e-04
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +G+KPYKC  C    TQ+  L RH  I
Sbjct: 2  SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGI 34

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 34.1 bits (79), Expect = 5e-04
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +  K Y C  C    T+   L RH KI
Sbjct: 2  SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI 34

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 34.1 bits (78), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GE P+KC  CD   TQ   L +H + 
Sbjct: 2  SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 5e-04
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C    TQ+  L RH  I
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGI 34

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 33.8 bits (78), Expect = 5e-04
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
            R  +G KP++C  CD   ++S  L  H K  H++
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR-HML 36

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 34.1 bits (79), Expect = 5e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
          S     +G+KPY+C+ C     Q+  L RH +  H
Sbjct: 2  SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 34.1 bits (79), Expect = 5e-04
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     S  K ++C  C    T    L +H +I
Sbjct: 2  SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 6e-04
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C    TQ+  L RH  I
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI 34

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 6e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPY C  C         L+ H +I
Sbjct: 2  SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI 34

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 6e-04
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C    +Q+  L RH +I
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI 34

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 33.7 bits (78), Expect = 6e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S      GE+ ++C  C     Q+    +H +I
Sbjct: 2  SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 7e-04
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C     ++  L RH  I
Sbjct: 2  SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI 34

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 7e-04
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPY+C  C    TQ   L +H K 
Sbjct: 2  SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT 34

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GE+P+KC  C     QS  L +H +I
Sbjct: 2  SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI 34

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     SG+KPY+C  C     Q G L +H ++
Sbjct: 2  SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV 34

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 8e-04
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEK Y C  C    +++  L +H ++
Sbjct: 2  SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL 34

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GE P+ C  C    T    L  H KI
Sbjct: 2  SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI 34

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 8e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC+ C      +    +H ++
Sbjct: 2  SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL 34

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 8e-04
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C    TQ+  L RH ++
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRV 34

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 33.7 bits (78), Expect = 8e-04
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
          S     S  KPY C  C    ++   L  H+K  H
Sbjct: 2  SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 34.4 bits (80), Expect = 8e-04
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFC 71
          ++CP         + + +K H++ HS  + Y C F 
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 9e-04
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          S     +GEKPYKC  C         L  H +I
Sbjct: 2  SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.94
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.87
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.87
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.86
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.86
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.85
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.85
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.85
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.84
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.84
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.84
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.84
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.82
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.82
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.82
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.81
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.8
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.8
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.8
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.8
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.79
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.78
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.76
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.76
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.76
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.75
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.75
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.75
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.75
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.75
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.74
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.74
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.73
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.71
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.71
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.7
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.69
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.68
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.67
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.66
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.66
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.66
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.66
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.65
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.64
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.64
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.63
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.63
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.59
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.59
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.58
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.57
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.57
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.57
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.57
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.57
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.57
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.57
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.56
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.56
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.56
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.56
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.56
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.56
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.56
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.56
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.56
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.56
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.56
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.56
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.56
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.56
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.56
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.56
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.55
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.55
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.55
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.55
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.55
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.55
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.55
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.55
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.55
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.55
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.55
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.55
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.55
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.55
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.55
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.55
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.55
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.55
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.54
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.54
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.54
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.54
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.54
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.54
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.54
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.53
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.52
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.52
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.52
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.52
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.52
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.52
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.5
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.5
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.49
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.48
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.48
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.48
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.48
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.48
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.47
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.47
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.45
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.45
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.45
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.45
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.45
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.45
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.44
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.44
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.44
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.44
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.44
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.44
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.43
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.43
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.43
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.43
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.43
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.42
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.42
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.42
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.41
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.41
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.41
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.41
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.4
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.4
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.4
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.39
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.39
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.39
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.38
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.38
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.37
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.37
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.37
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.37
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.36
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.35
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.29
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.29
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.27
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.2
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.19
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.19
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.19
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.17
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.16
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.16
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.16
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.16
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.16
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.15
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.15
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.15
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.14
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.11
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.11
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.11
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.07
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.06
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.05
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.05
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.05
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.02
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.02
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.01
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.01
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.01
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.01
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.0
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.98
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.98
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.98
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.97
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.97
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.96
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.95
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.95
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.93
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.92
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.91
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.91
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.82
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.82
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.82
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.78
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.76
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.76
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.75
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.71
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.71
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.69
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.69
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.67
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.66
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.65
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.64
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.63
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.62
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.06
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.04
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.58
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.57
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.55
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.54
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.5
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.47
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.47
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.42
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.42
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.4
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.4
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.39
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.38
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.37
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.36
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.68
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.31
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.29
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.29
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.54
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.22
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.22
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.21
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.19
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.18
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.45
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.15
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.15
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.13
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.08
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.31
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.95
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.64
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.17
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.1
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.87
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.83
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	95.58
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.54
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.42
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.14
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.72
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	93.51
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	93.42
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	92.78
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	92.4
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	91.85
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	91.08
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	89.01
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	88.86
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	88.13
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	87.35
4rxn_A	54	Rubredoxin; electron transfer(iron-sulfur protein)	86.43
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	86.42
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	86.16
1e8j_A	52	Rubredoxin; iron-sulfur-protein, zinc-substitution	84.74
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	84.44
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	83.95
1yk4_A	52	Rubredoxin, RD; electron transport; 0.69A {Pyrococ	83.87
2kn9_A	81	Rubredoxin; metalloprotein, ssgcid, structural gen	83.59
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	83.36
2v3b_B	55	Rubredoxin 2, rubredoxin; alkane degradation, iron	82.84
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	82.06
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	81.86
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	81.51
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	81.29
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	80.27
3a43_A	139	HYPD, hydrogenase nickel incorporation protein HYP	80.21

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.94  E-value=2.5e-27  Score=129.28  Aligned_cols=93  Identities=20%  Similarity=0.353  Sum_probs=87.7

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|+.||+.|.....|.. +..|.++     +     +|.|+.|++.|.....|..|++.|.+++||.|..|++.|...+
T Consensus        23 y~C~~C~k~F~~~~~L~~H~~~H~~~-----k-----~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~   92 (133)
T 2lt7_A           23 YICIVCKRSYVCLTSLRRHFNIHSWE-----K-----KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQ   92 (133)
T ss_dssp             EEETTTCCEESCHHHHHHHHHHHHCC-----S-----CEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHH
T ss_pred             eECCCCCCCcCCHHHHHHHHHHcCCC-----C-----CeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHH
Confidence            679999999999999999 9999999     8     9999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccCc------cCCCCCccccC
Q psy3949          80 PLRRHMKIKHLME------SSNSHDITFVM  103 (103)
Q Consensus        80 ~l~~h~~~~~~e~------~~~C~~C~~~~  103 (103)
                      .|..|+++|++++      +|+|..|+++|
T Consensus        93 ~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~  122 (133)
T 2lt7_A           93 FMSSHIKSVHSQDPSGDSKLYRLHPCRSLQ  122 (133)
T ss_dssp             HHHHHHHHHTCCCTTSSSCCEEECCCCSSC
T ss_pred             HHHHHhHHhcCCCCCCCCCCeecCCCCchh
Confidence            9999999988765      47899999876

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=3.9e-25  Score=118.86  Aligned_cols=93  Identities=17%  Similarity=0.295  Sum_probs=88.1

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHH---hhCCCCccCCcCccccc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRK---HSGEKPYKCLFCDYHCT   76 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~~~~c~~c~~~f~   76 (103)
                      |.|+.|++.|.....|.. +..|.+.     +     +|.|+.|++.|.....|..|+..   +.++++|.|..|++.|.
T Consensus         8 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~   77 (124)
T 2dlq_A            8 VECPTCHKKFLSKYYLKVHNRKHTGE-----K-----PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFR   77 (124)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHSSC-----C-----SCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEES
T ss_pred             CCCCCCCCcCCCHHHHHHHHHhCCCC-----C-----CeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccC
Confidence            689999999999999999 9999988     8     89999999999999999999985   57888999999999999


Q ss_pred             CcchhhhhhhhcccCccCCCCCccccC
Q psy3949          77 QSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        77 ~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      ....|..|+++|++++||.|+.|++.|
T Consensus        78 ~~~~l~~H~~~h~~~~~~~C~~C~~~f  104 (124)
T 2dlq_A           78 RRMELRLHMVSHTGEMPYKCSSCSQQF  104 (124)
T ss_dssp             SHHHHHHHHHHHSSSCSEECSSSCCEE
T ss_pred             CHHHHHHHHHHcCCCCCccCCCccchh
Confidence            999999999999999999999999986

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.91  E-value=4.9e-25  Score=126.25  Aligned_cols=93  Identities=23%  Similarity=0.450  Sum_probs=70.3

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|+.|++.|.....|.. +..|.+.     +     +|.|+.|++.|.....|..|+..|.++++|.|..|++.|....
T Consensus        78 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  147 (190)
T 2i13_A           78 YKCPECGKSFSQRANLRAHQRTHTGE-----K-----PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRED  147 (190)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHTC-----C-----CEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHH
T ss_pred             ccCcccCCccCCHHHHHHHHHhcCCC-----C-----CCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHH
Confidence            346666666666666666 6666666     6     7778888888887778888887777777888888888888888


Q ss_pred             hhhhhhhhcccCccCCCCCccccC
Q psy3949          80 PLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        80 ~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .|..|+++|++++||.|++|+++|
T Consensus       148 ~L~~H~~~H~~~~~~~C~~C~~~f  171 (190)
T 2i13_A          148 NLHTHQRTHTGEKPYKCPECGKSF  171 (190)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             HHHHHHHhcCCCCCeECCCCCCcc
Confidence            888888888888888888887765

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=9.4e-25  Score=116.69  Aligned_cols=93  Identities=22%  Similarity=0.467  Sum_probs=88.6

Q ss_pred             CcccC--CCcccccccCHHH-HHhhhCCCccccCCCCCcceecC--CCCCCccchhHHHHHHHHhhCCCCccCCcCcccc
Q psy3949           1 VRCQY--CKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCY--TCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC   75 (103)
Q Consensus         1 ~~C~~--C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   75 (103)
                      |.|..  |++.|.....|.. +..|.+.     +     +|.|.  .|++.|.....|..|+..|.++++|.|..|++.|
T Consensus         7 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   76 (119)
T 2jp9_A            7 FMCAYPGCNKRYFKLSHLQMHSRKHTGE-----K-----PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF   76 (119)
T ss_dssp             BCCCSTTSCCCBSCHHHHHHHHHHHHTT-----C-----CEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             eeCCCCCCcchhCCHHHHHHHHHhhCCC-----C-----CccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchh
Confidence            57886  9999999999999 9999988     8     89999  7999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhcccCccCCC--CCccccC
Q psy3949          76 TQSGPLRRHMKIKHLMESSNS--HDITFVM  103 (103)
Q Consensus        76 ~~~~~l~~h~~~~~~e~~~~C--~~C~~~~  103 (103)
                      .....|..|+++|+++++|.|  +.|++.|
T Consensus        77 ~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f  106 (119)
T 2jp9_A           77 SRSDHLKTHTRTHTGEKPFSCRWPSCQKKF  106 (119)
T ss_dssp             SCHHHHHHHHHHHHTCCCEECCSTTCCCEE
T ss_pred             CCHHHHHHHHHHhcCCCCeeCCCCCCcccc
Confidence            999999999999999999999  8999986

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.89  E-value=3.5e-24  Score=122.69  Aligned_cols=93  Identities=24%  Similarity=0.443  Sum_probs=72.7

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|+.|++.|.....|.. +..|.+.     +     +|.|+.|++.|.....|..|+..|.++++|.|..|++.|....
T Consensus        50 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  119 (190)
T 2i13_A           50 YKCPECGKSFSDKKDLTRHQRTHTGE-----K-----PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA  119 (190)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHCC-----C-----CEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHH
T ss_pred             ccCCCcCchhCCHHHHHHHHHhcCCC-----C-----CccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHH
Confidence            357777777777777777 7777766     6     7788888888888888888888888778888888888888888


Q ss_pred             hhhhhhhhcccCccCCCCCccccC
Q psy3949          80 PLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        80 ~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .|..|+++|+++++|.|+.|+++|
T Consensus       120 ~l~~H~~~h~~~~~~~C~~C~~~f  143 (190)
T 2i13_A          120 HLRAHQRTHTGEKPYKCPECGKSF  143 (190)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             HHHHHHHHhCCCCCeECCCCCccc
Confidence            888888888888888888888765

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=1.6e-23  Score=112.69  Aligned_cols=92  Identities=24%  Similarity=0.428  Sum_probs=85.7

Q ss_pred             Cccc--CCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCc--Ccccc
Q psy3949           1 VRCQ--YCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHC   75 (103)
Q Consensus         1 ~~C~--~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~f   75 (103)
                      |.|+  .|++.|.+...|.. +..| +.     +     +|.|..|++.|.....|..|+..|.++++|.|..  |++.|
T Consensus         6 ~~C~~~~C~~~f~~~~~l~~H~~~h-~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f   74 (124)
T 1ubd_C            6 IACPHKGCTKMFRDNSAMRKHLHTH-GP-----R-----VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRF   74 (124)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHGGG-SC-----C-----CEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEE
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHHc-CC-----C-----CeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCcc
Confidence            4688  89999999999999 8888 66     6     8999999999999999999999999999999975  99999


Q ss_pred             cCcchhhhhhhhcccCccCCCC--CccccC
Q psy3949          76 TQSGPLRRHMKIKHLMESSNSH--DITFVM  103 (103)
Q Consensus        76 ~~~~~l~~h~~~~~~e~~~~C~--~C~~~~  103 (103)
                      .....|..|+++|+++++|.|+  .|+++|
T Consensus        75 ~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f  104 (124)
T 1ubd_C           75 SLDFNLRTHVRIHTGDRPYVCPFDGCNKKF  104 (124)
T ss_dssp             SCHHHHHHHHHHHHCCCCCCCCSTTCCCCC
T ss_pred             CCHHHHHHHHHHhCCCCceECCCCCCCCcc
Confidence            9999999999999999999996  599987

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=3.9e-23  Score=114.98  Aligned_cols=98  Identities=19%  Similarity=0.261  Sum_probs=84.8

Q ss_pred             CcccCCCcccccccCHHH-HHh-hhCCCccccCCC---CCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCc--Ccc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLS-HTKSCTYISRPD---HNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDY   73 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~-h~~~~~~~~~~~---~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~   73 (103)
                      |.|..|++.|.....|.. +.. |.+.     .+.   ....+.|..|++.|.....|..|++.|.++++|.|..  |++
T Consensus        26 ~~C~~C~~~f~~~~~L~~H~~~~H~~~-----~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~  100 (155)
T 2rpc_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGG-----PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGK  100 (155)
T ss_dssp             SSCCCCCCCBSSHHHHHHHHHTTTSCC-----TTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCC
T ss_pred             cccccCCcccCCHHHHHHHHHhhcCCC-----cccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCC
Confidence            578999999999999999 876 7665     310   0112789999999999999999999999999999988  999


Q ss_pred             cccCcchhhhhhhhcccCccCCCCC--ccccC
Q psy3949          74 HCTQSGPLRRHMKIKHLMESSNSHD--ITFVM  103 (103)
Q Consensus        74 ~f~~~~~l~~h~~~~~~e~~~~C~~--C~~~~  103 (103)
                      .|.....|..|+++|+++++|.|+.  |++.|
T Consensus       101 ~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f  132 (155)
T 2rpc_A          101 IFARSENLKIHKRTHTGEKPFKCEFEGCDRRF  132 (155)
T ss_dssp             EESCHHHHHHHHTTTCSSCSBCCSSTTCCCCB
T ss_pred             ccCCHHHHHHHHHhhCCCCCccCCCCCCCCcc
Confidence            9999999999999999999999997  99987

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.87  E-value=2.3e-23  Score=113.58  Aligned_cols=67  Identities=18%  Similarity=0.291  Sum_probs=65.9

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      +|.|++|++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|++++||.|++||++|
T Consensus        22 ~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F   88 (133)
T 2lt7_A           22 YYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSF   88 (133)
T ss_dssp             EEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEE
T ss_pred             CeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999987

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.87  E-value=2.3e-22  Score=105.52  Aligned_cols=86  Identities=27%  Similarity=0.480  Sum_probs=80.0

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|..|++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|+..|.++++|.|..|++.|....
T Consensus        18 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   87 (106)
T 2ee8_A           18 FICKFCGRHFTKSYNLLIHERTHTDE-----R-----PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSR   87 (106)
T ss_dssp             CBCSSSCCBCSSHHHHHHHHHHHCCS-----C-----CCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHH
T ss_pred             eECCCCCCccCCHHHHHHHHHHcCCC-----C-----CcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHH
Confidence            679999999999999999 8899888     7     8999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccCccCCC
Q psy3949          80 PLRRHMKIKHLMESSNS   96 (103)
Q Consensus        80 ~l~~h~~~~~~e~~~~C   96 (103)
                      .|..|+++|+++++|..
T Consensus        88 ~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           88 TLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHhCCCCCCcC
Confidence            99999999999999865

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=3.7e-22  Score=110.89  Aligned_cols=89  Identities=20%  Similarity=0.320  Sum_probs=68.2

Q ss_pred             CCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCC--CCCCccchhHHHHHHHHhhCCCCccCCc--CcccccCcc
Q psy3949           5 YCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYT--CPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSG   79 (103)
Q Consensus         5 ~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~f~~~~   79 (103)
                      .|++.|.....|.. +..|.+.     +     +|.|..  |++.|.....|..|++.|.++++|.|..  |++.|....
T Consensus        44 ~c~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~  113 (155)
T 2gli_A           44 RELRPFKAQYMLVVHMRRHTGE-----K-----PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS  113 (155)
T ss_dssp             TTTCCCSSHHHHHHHTHHHHCC-----C-----CCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSS
T ss_pred             chhhhhhhHHHHHHHHHhcCCC-----C-----CccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHH
Confidence            33456666555655 5556555     5     788874  8888888888888888888888888887  888888888


Q ss_pred             hhhhhh-hhcccCccCCCCC--ccccC
Q psy3949          80 PLRRHM-KIKHLMESSNSHD--ITFVM  103 (103)
Q Consensus        80 ~l~~h~-~~~~~e~~~~C~~--C~~~~  103 (103)
                      .|..|+ ++|.++++|.|+.  |+++|
T Consensus       114 ~L~~H~~~~H~~~~~~~C~~~~C~~~f  140 (155)
T 2gli_A          114 DRAKHQNRTHSNEKPYVCKLPGCTKRY  140 (155)
T ss_dssp             TTHHHHHHTTCSCCCEECCSTTTCCEE
T ss_pred             HHHHHHHHhcCCCCCeeCCCCCCcccc
Confidence            888887 6788888888877  88876

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.86  E-value=6.5e-22  Score=113.23  Aligned_cols=93  Identities=20%  Similarity=0.323  Sum_probs=70.5

Q ss_pred             Ccc--cCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecC--CCCCCccchhHHHHHH-HHh-hCCCCccC--CcC
Q psy3949           1 VRC--QYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCY--TCPYHTTYSQSMKSHL-RKH-SGEKPYKC--LFC   71 (103)
Q Consensus         1 ~~C--~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~-~~~-~~~~~~~c--~~c   71 (103)
                      |.|  +.|++.|.....|.. +..|.+.     +     +|.|.  .|++.|.....|..|+ ..| .+.++|.|  ..|
T Consensus        43 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C  112 (190)
T 1tf6_A           43 FPCKEEGCEKGFTSLHHLTRHSLTHTGE-----K-----NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENC  112 (190)
T ss_dssp             SCCSSTTCCCCCSSHHHHHHHHTTTTTC-----C-----CEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSS
T ss_pred             ccCCCCCCChhhCCHHHHHHHHHHccCC-----C-----ceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCC
Confidence            456  667777777777777 6667666     6     77887  7888888888888887 455 45667888  778


Q ss_pred             cccccCcchhhhhhhhcccCccCCCCC--ccccC
Q psy3949          72 DYHCTQSGPLRRHMKIKHLMESSNSHD--ITFVM  103 (103)
Q Consensus        72 ~~~f~~~~~l~~h~~~~~~e~~~~C~~--C~~~~  103 (103)
                      ++.|.....|..|+++|++++||.|+.  |+++|
T Consensus       113 ~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F  146 (190)
T 1tf6_A          113 GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF  146 (190)
T ss_dssp             CEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBC
T ss_pred             ccccCCHHHHHHHHHHhCCCCCccCCCCCCCchh
Confidence            888888888888888888888888877  88876

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.85  E-value=8.2e-22  Score=109.59  Aligned_cols=87  Identities=30%  Similarity=0.505  Sum_probs=82.9

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCC--CCCCccchhHHHHHHHHhhCCCCccCCc--Ccccc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYT--CPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHC   75 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~f   75 (103)
                      |.|..|++.|.....|.. +..|.+.     +     +|.|..  |++.|.....|..|++.|.++++|.|..  |++.|
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f  132 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGE-----K-----PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF  132 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCC-----C-----SEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCB
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCC-----C-----cccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCcc
Confidence            469999999999999999 9999988     8     999998  9999999999999999999999999997  99999


Q ss_pred             cCcchhhhhhhhcccCccCCCC
Q psy3949          76 TQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        76 ~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      .....|..|+++|++++||.|.
T Consensus       133 ~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          133 ANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             SSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999986

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=1.3e-21  Score=108.65  Aligned_cols=93  Identities=20%  Similarity=0.356  Sum_probs=83.7

Q ss_pred             CcccCCCcccccccCHHH-HH---hhhCCCccccCCCCCcceecCC-----CCCCccchhHHHHHHHHhhCCCCccCCc-
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VL---SHTKSCTYISRPDHNYRFVCYT-----CPYHTTYSQSMKSHLRKHSGEKPYKCLF-   70 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~---~h~~~~~~~~~~~~~~~~~c~~-----c~~~~~~~~~l~~h~~~~~~~~~~~c~~-   70 (103)
                      |.|+.|++.|.+...|.. +.   .|.+.     +     +|.|..     |++.|.....|..|+..|.++++|.|.. 
T Consensus         4 ~~C~~C~~~f~~~~~L~~H~~~~h~h~~~-----~-----~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~   73 (155)
T 2gli_A            4 CRWDGCSQEFDSQEQLVHHINSEHIHGER-----K-----EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFE   73 (155)
T ss_dssp             CCBTTCCCBCSCHHHHHHHHHHHTSSSCS-----S-----CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCST
T ss_pred             CCcCCCccccCCHHHHHHHHHhhccCCCC-----c-----ceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCC
Confidence            579999999999999999 76   46666     6     787764     4599999999999999999999999985 


Q ss_pred             -CcccccCcchhhhhhhhcccCccCCCCC--ccccC
Q psy3949          71 -CDYHCTQSGPLRRHMKIKHLMESSNSHD--ITFVM  103 (103)
Q Consensus        71 -c~~~f~~~~~l~~h~~~~~~e~~~~C~~--C~~~~  103 (103)
                       |++.|.....|..|+++|+++++|.|+.  |+++|
T Consensus        74 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f  109 (155)
T 2gli_A           74 GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF  109 (155)
T ss_dssp             TCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEE
T ss_pred             CCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCcc
Confidence             9999999999999999999999999998  99986

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=2e-21  Score=100.29  Aligned_cols=84  Identities=30%  Similarity=0.626  Sum_probs=78.3

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|..|++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|+..|.++++|.|..|++.|....
T Consensus         9 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   78 (96)
T 2dmd_A            9 HKCEVCGKCFSRKDKLKTHMRCHTGV-----K-----PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS   78 (96)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCCC-----C-----SEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHH
T ss_pred             eECCCCCCccCCHHHHHHHHHhcCCC-----C-----CEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHH
Confidence            679999999999999999 8888887     7     8999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccCccC
Q psy3949          80 PLRRHMKIKHLMESS   94 (103)
Q Consensus        80 ~l~~h~~~~~~e~~~   94 (103)
                      .|..|+++|+++++.
T Consensus        79 ~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           79 QLTVHLRSHTGDSGP   93 (96)
T ss_dssp             HHHHHHTTCCSCCCC
T ss_pred             HHHHHHHHhcCCCCC
Confidence            999999999998764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.84  E-value=3.2e-21  Score=96.28  Aligned_cols=69  Identities=17%  Similarity=0.221  Sum_probs=65.5

Q ss_pred             CcceecCC--CCCCccchhHHHHHHH-HhhCCCCccCCc--CcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          35 NYRFVCYT--CPYHTTYSQSMKSHLR-KHSGEKPYKCLF--CDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        35 ~~~~~c~~--c~~~~~~~~~l~~h~~-~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .++|.|..  |++.|.....|..|+. .|.++++|.|..  |++.|.....|..|+++|++++||.|++|++.|
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            34889987  9999999999999999 799999999998  999999999999999999999999999999988

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.84  E-value=1.7e-21  Score=97.79  Aligned_cols=80  Identities=30%  Similarity=0.523  Sum_probs=75.1

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|+.|++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|+..|.++++|.|..|++.|....
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   71 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHSDT-----R-----PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS   71 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHTC-----C-----CEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHH
T ss_pred             ccCCCCcccccCchhHHHHHHHcCCC-----C-----CeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChH
Confidence            579999999999999999 9999888     8     8999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccc
Q psy3949          80 PLRRHMKIKHL   90 (103)
Q Consensus        80 ~l~~h~~~~~~   90 (103)
                      .|..|+++|+|
T Consensus        72 ~l~~H~~~H~g   82 (82)
T 2kmk_A           72 NLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHhhCC
Confidence            99999999875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.84  E-value=2.6e-21  Score=91.97  Aligned_cols=57  Identities=23%  Similarity=0.446  Sum_probs=54.7

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      +||.|++||+.|.....|..|+++|++++||.|..|++.|...+.|..|+++|+||+
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            399999999999999999999999999999999999999999999999999999986

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.84  E-value=3.2e-21  Score=98.38  Aligned_cols=83  Identities=29%  Similarity=0.585  Sum_probs=75.5

Q ss_pred             Cccc--CCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccC
Q psy3949           1 VRCQ--YCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQ   77 (103)
Q Consensus         1 ~~C~--~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~   77 (103)
                      |.|+  .|++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|+..|.++++|.|..|++.|..
T Consensus         5 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   74 (90)
T 1a1h_A            5 YACPVESCDRRFSQSGSLTRHIRIHTGQ-----K-----PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR   74 (90)
T ss_dssp             EECCSSSCCCEESSHHHHHHHHHHHHCC-----C-----CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS
T ss_pred             eECCCCCCCCccCCHHHHHHHHHHhCCC-----C-----CccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCC
Confidence            4687  59999999999999 9999988     8     89999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhcccCcc
Q psy3949          78 SGPLRRHMKIKHLMES   93 (103)
Q Consensus        78 ~~~l~~h~~~~~~e~~   93 (103)
                      ...|..|+++|+++++
T Consensus        75 ~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           75 SDERKRHTKIHLRQKD   90 (90)
T ss_dssp             HHHHHHHHGGGGC---
T ss_pred             HHHHHHHHHHhcccCC
Confidence            9999999999999863

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.82  E-value=1e-20  Score=108.29  Aligned_cols=93  Identities=19%  Similarity=0.363  Sum_probs=86.4

Q ss_pred             Ccc--cCCCcccccccCHHH-HHhhhCCCccccCCCCCcceec--CCCCCCccchhHHHHHHHHhhCCCCccCC--cCcc
Q psy3949           1 VRC--QYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVC--YTCPYHTTYSQSMKSHLRKHSGEKPYKCL--FCDY   73 (103)
Q Consensus         1 ~~C--~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~   73 (103)
                      |.|  +.||+.|.....|.. +..|.+.     +     +|.|  +.|++.|.....|..|+..|.++++|.|.  .|++
T Consensus        13 ~~C~~~~C~~~f~~~~~L~~H~~~h~~~-----~-----~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~   82 (190)
T 1tf6_A           13 YICSFADCGAAYNKNWKLQAHLCKHTGE-----K-----PFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDL   82 (190)
T ss_dssp             CBCSSTTTCCBCSSHHHHHHHHHHHHCC-----C-----SSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCC
T ss_pred             eeCCCCCCcchhCCHHHHHHHHHhcCCC-----C-----CccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCC
Confidence            568  689999999999999 9999998     8     8999  88999999999999999999999999999  8999


Q ss_pred             cccCcchhhhhh-hhc-ccCccCCC--CCccccC
Q psy3949          74 HCTQSGPLRRHM-KIK-HLMESSNS--HDITFVM  103 (103)
Q Consensus        74 ~f~~~~~l~~h~-~~~-~~e~~~~C--~~C~~~~  103 (103)
                      .|.....|..|+ +.| .++++|.|  +.|+++|
T Consensus        83 ~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f  116 (190)
T 1tf6_A           83 RFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF  116 (190)
T ss_dssp             EESCHHHHHHHHHTTSSTTTSCCEECSSSSCEEC
T ss_pred             ccCCHHHHHHHHHHhcCCCcceeeCCCCCCcccc
Confidence            999999999999 667 57899999  8999987

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=8.1e-21  Score=99.85  Aligned_cols=85  Identities=18%  Similarity=0.215  Sum_probs=78.3

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|..|++.|.....|.. +..|.       +     +|.|..|++.|.....|..|+. |.++++|.|..|++.|....
T Consensus        17 ~~C~~C~~~f~~~~~l~~H~~~H~-------~-----~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~   83 (107)
T 1wjp_A           17 YQCRLCNAKLSSLLEQGSHERLCR-------N-----AAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSF   83 (107)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHHH-------H-----SBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHH
T ss_pred             eECCCCCCccCCHHHHHHHHHHCC-------C-----CccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHH
Confidence            689999999999999999 88883       5     7999999999999999999996 99999999999999999999


Q ss_pred             hhhhhhh-hcccCccCCCCC
Q psy3949          80 PLRRHMK-IKHLMESSNSHD   98 (103)
Q Consensus        80 ~l~~h~~-~~~~e~~~~C~~   98 (103)
                      .|..|++ +|.++++|.+..
T Consensus        84 ~L~~H~~~~H~~~~~~~~~~  103 (107)
T 1wjp_A           84 SIWRHQVEVHNQNNMAPTSG  103 (107)
T ss_dssp             HHHHHHHHTSCCCCCCCCCC
T ss_pred             HHHHHHHHHcCCCCCCCCCC
Confidence            9999997 899999998763

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.82  E-value=4.9e-20  Score=96.58  Aligned_cols=70  Identities=26%  Similarity=0.432  Sum_probs=66.9

Q ss_pred             CCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          34 HNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        34 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      ..++|.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++|+++++|.|++|++.|
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   83 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF   83 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcc
Confidence            3458999999999999999999999999999999999999999999999999999999999999999987

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=3.8e-20  Score=95.24  Aligned_cols=81  Identities=26%  Similarity=0.520  Sum_probs=66.9

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCC--CCccCCcCcccccC
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGE--KPYKCLFCDYHCTQ   77 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~--~~~~c~~c~~~f~~   77 (103)
                      |.|..|++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|++.|.++  ++|.|..|++.|..
T Consensus         8 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~   77 (95)
T 2yt9_A            8 VACEICGKIFRDVYHLNRHKLSHSGE-----K-----PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR   77 (95)
T ss_dssp             EECSSSCCEESSSHHHHHHHHHSCSS-----C-----SEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSS
T ss_pred             eECCCCCCccCChHHHHHHHHhcCCC-----C-----CCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCC
Confidence            468888888888888888 8888777     7     788888888888888888888888776  78888888888888


Q ss_pred             cchhhhhhh-hcccC
Q psy3949          78 SGPLRRHMK-IKHLM   91 (103)
Q Consensus        78 ~~~l~~h~~-~~~~e   91 (103)
                      ...|..|++ .|.++
T Consensus        78 ~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           78 PDHLNGHIKQVHSGP   92 (95)
T ss_dssp             HHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHhcCCC
Confidence            888888875 57664

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.81  E-value=2.2e-20  Score=93.68  Aligned_cols=67  Identities=22%  Similarity=0.437  Sum_probs=64.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      ||.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++|+++++|.|++|++.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   67 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAF   67 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEE
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhh
Confidence            5889999999999999999999999999999999999999999999999999999999999999986

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=2.3e-20  Score=96.22  Aligned_cols=69  Identities=28%  Similarity=0.540  Sum_probs=66.2

Q ss_pred             CcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          35 NYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        35 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .++|.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++|+++++|.|++|++.|
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   74 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYAS   74 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEE
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCcc
Confidence            348999999999999999999999999999999999999999999999999999999999999999976

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.80  E-value=4.3e-20  Score=99.18  Aligned_cols=85  Identities=25%  Similarity=0.516  Sum_probs=74.6

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCC--CCCCccchhHHHHHHHHhhCCCCccCC--cCcccc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYT--CPYHTTYSQSMKSHLRKHSGEKPYKCL--FCDYHC   75 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~f   75 (103)
                      |.|..|++.|.....|.. +..|.+.     +     +|.|..  |++.|.....|..|++.|.++++|.|.  .|++.|
T Consensus        35 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f  104 (124)
T 1ubd_C           35 HVCAECGKAFVESSKLKRHQLVHTGE-----K-----PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF  104 (124)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC-----C-----CEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCC
T ss_pred             eECCCCCchhCCHHHHHHHHHHcCCC-----C-----CeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCcc
Confidence            579999999999999999 9899888     8     899985  999999999999999999999999995  599999


Q ss_pred             cCcchhhhhhhhcccCccCC
Q psy3949          76 TQSGPLRRHMKIKHLMESSN   95 (103)
Q Consensus        76 ~~~~~l~~h~~~~~~e~~~~   95 (103)
                      .....|..|+++|+++++++
T Consensus       105 ~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C          105 AQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             SSTTTTHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHcccccCC
Confidence            99999999999999998863

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=4.8e-20  Score=97.25  Aligned_cols=65  Identities=23%  Similarity=0.369  Sum_probs=31.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCcccc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFV  102 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~  102 (103)
                      +|.| .|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++|+++++|.|++|++.
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR   74 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCE
T ss_pred             CEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcch
Confidence            4444 4444444444444444444444444444444444444444444444444444444444443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.4e-19  Score=93.05  Aligned_cols=70  Identities=19%  Similarity=0.299  Sum_probs=66.3

Q ss_pred             CCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccC--ccCCCCCccccC
Q psy3949          34 HNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM--ESSNSHDITFVM  103 (103)
Q Consensus        34 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e--~~~~C~~C~~~~  103 (103)
                      +.++|.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++|+++  ++|.|++|++.|
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f   75 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF   75 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence            3448999999999999999999999999999999999999999999999999999997  999999999987

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=1.6e-20  Score=99.77  Aligned_cols=79  Identities=9%  Similarity=0.018  Sum_probs=63.4

Q ss_pred             CHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHH--hhCCCCc-cCCcCcccc--cCcchhhhhhhhc
Q psy3949          15 GFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRK--HSGEKPY-KCLFCDYHC--TQSGPLRRHMKIK   88 (103)
Q Consensus        15 ~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~~~-~c~~c~~~f--~~~~~l~~h~~~~   88 (103)
                      .|.. ++.|.+.     +     +|.|..|++.|.....|..|++.  |.+.+++ .|..|++.|  .....|..|+++|
T Consensus         6 ~l~~H~~~H~~~-----~-----~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H   75 (115)
T 2dmi_A            6 SGKLYGSIFTGA-----S-----KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE   75 (115)
T ss_dssp             CCCCCCCCCCCC-----C-----SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSC
T ss_pred             hhhhheeeeCCC-----C-----CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhcc
Confidence            3444 5566666     6     88999999999988999999887  6666654 488888888  7888888898888


Q ss_pred             ccCccCCCCCccccC
Q psy3949          89 HLMESSNSHDITFVM  103 (103)
Q Consensus        89 ~~e~~~~C~~C~~~~  103 (103)
                      ++++||.|++|++.|
T Consensus        76 ~~~~~~~C~~C~k~f   90 (115)
T 2dmi_A           76 DAQKVLKCMYCGHSF   90 (115)
T ss_dssp             CCCSSCBCSSSCCBC
T ss_pred             CCCcceECCCCCCcc
Confidence            888999999998877

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.79  E-value=5.8e-20  Score=93.65  Aligned_cols=67  Identities=22%  Similarity=0.456  Sum_probs=64.8

Q ss_pred             ceecC--CCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCY--TCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      +|.|.  .|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++|+++++|.|++|++.|
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   72 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF   72 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchh
Confidence            89998  69999999999999999999999999999999999999999999999999999999999976

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=3.1e-19  Score=88.69  Aligned_cols=63  Identities=30%  Similarity=0.507  Sum_probs=60.3

Q ss_pred             CCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCC
Q psy3949          34 HNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNS   96 (103)
Q Consensus        34 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C   96 (103)
                      +.++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|++++||+|
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            345899999999999999999999999999999999999999999999999999999999998

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.76  E-value=6.7e-19  Score=89.49  Aligned_cols=79  Identities=29%  Similarity=0.652  Sum_probs=65.3

Q ss_pred             CcccC--CCcccccccCHHH-HHhhhCCCccccCCCCCcceecC--CCCCCccchhHHHHHHHHhhCCCCccCCcCcccc
Q psy3949           1 VRCQY--CKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCY--TCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC   75 (103)
Q Consensus         1 ~~C~~--C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   75 (103)
                      |.|+.  |++.|.....|.. +..|.+.     +     +|.|+  .|++.|.....|..|+..|.++++|.|..|++.|
T Consensus         6 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   75 (89)
T 2wbs_A            6 HTCDYAGCGKTYTKSSHLKAHLRTHTGE-----K-----PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAF   75 (89)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHTTSCSS-----C-----CEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEE
T ss_pred             eeCCCCCCCCcCCCHHHHHHHHHhcCCC-----C-----CcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCccc
Confidence            45777  8888888888888 8778777     7     78886  5888888888888888888888888888888888


Q ss_pred             cCcchhhhhhhhcc
Q psy3949          76 TQSGPLRRHMKIKH   89 (103)
Q Consensus        76 ~~~~~l~~h~~~~~   89 (103)
                      .....|..|+++|.
T Consensus        76 ~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           76 SRSDHLALHMKRHF   89 (89)
T ss_dssp             SSHHHHHHHGGGGC
T ss_pred             CCHHHHHHHHHhhC
Confidence            88888888888763

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.76  E-value=1.3e-18  Score=90.21  Aligned_cols=67  Identities=33%  Similarity=0.518  Sum_probs=38.7

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHhhCCCCccCC--cCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKHSGEKPYKCL--FCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      +|.|..  |++.|.....|..|++.|.++++|.|.  .|++.|.....|..|+++|+++++|.|++|++.|
T Consensus        15 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   85 (100)
T 2ebt_A           15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF   85 (100)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBC
T ss_pred             ceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCcc
Confidence            455554  555555555555555555555555553  3555555555555555555555555555555554

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=3.9e-19  Score=93.72  Aligned_cols=79  Identities=22%  Similarity=0.444  Sum_probs=74.8

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.| .|++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|+..|.++++|.|..|++.|....
T Consensus        11 ~~C-~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   79 (110)
T 2csh_A           11 YPC-QCGKSFTHKSQRDRHMSMHLGL-----R-----PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRD   79 (110)
T ss_dssp             EEC-TTSCEESSHHHHHHHHHHHSCC-----C-----SEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHH
T ss_pred             Eec-cCCCccCCHHHHHHHHHHcCCC-----c-----CccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHH
Confidence            579 89999999999999 9999888     8     8999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccc
Q psy3949          80 PLRRHMKIKHL   90 (103)
Q Consensus        80 ~l~~h~~~~~~   90 (103)
                      .|..|+++|+.
T Consensus        80 ~l~~H~~~~~~   90 (110)
T 2csh_A           80 SFHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHccc
Confidence            99999998765

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.75  E-value=2.4e-18  Score=89.11  Aligned_cols=80  Identities=29%  Similarity=0.629  Sum_probs=74.4

Q ss_pred             CcccC--CCcccccccCHHH-HHhhhCCCccccCCCCCcceecC--CCCCCccchhHHHHHHHHhhCCCCccCCcCcccc
Q psy3949           1 VRCQY--CKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCY--TCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC   75 (103)
Q Consensus         1 ~~C~~--C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   75 (103)
                      |.|..  |++.|.....|.. +..|.+.     +     +|.|.  .|++.|.....|..|++.|.++++|.|..|++.|
T Consensus        16 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   85 (100)
T 2ebt_A           16 HYCDYPGCTKVYTKSSHLKAHLRTHTGE-----K-----PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF   85 (100)
T ss_dssp             EECCSSSCCCEESCHHHHHHHHHHHSCC-----C-----CEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBC
T ss_pred             eEcCCCCCCCcccCHHHHHHHHHHhCCC-----C-----CeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCcc
Confidence            45775  9999999999999 9999888     8     89996  6999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhccc
Q psy3949          76 TQSGPLRRHMKIKHL   90 (103)
Q Consensus        76 ~~~~~l~~h~~~~~~   90 (103)
                      .....|..|+++|++
T Consensus        86 ~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           86 SRSDHLALHMKRHQN  100 (100)
T ss_dssp             SSHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999999864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=9e-19  Score=88.49  Aligned_cols=75  Identities=15%  Similarity=0.250  Sum_probs=67.7

Q ss_pred             HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCC----CCccCCcCcccccCcchhhhhhhhcccCccC
Q psy3949          19 VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGE----KPYKCLFCDYHCTQSGPLRRHMKIKHLMESS   94 (103)
Q Consensus        19 ~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~----~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~   94 (103)
                      ++.|.+.     +     +|.|..|++.|.....|..|+..+.+.    ++|.|..|++.|.....|..|+++|++++++
T Consensus         7 ~~~H~~~-----k-----~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~   76 (86)
T 1x6h_A            7 GRTHTGE-----K-----PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGV   76 (86)
T ss_dssp             STTCCCC-----C-----CEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSC
T ss_pred             cceecCC-----C-----CCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCc
Confidence            4566666     6     999999999999999999999876665    7899999999999999999999999999999


Q ss_pred             CCCCccccC
Q psy3949          95 NSHDITFVM  103 (103)
Q Consensus        95 ~C~~C~~~~  103 (103)
                      .|..|+..|
T Consensus        77 ~~~~~~~~~   85 (86)
T 1x6h_A           77 EGENSGPSS   85 (86)
T ss_dssp             CCCCCCCCC
T ss_pred             ccCCCCCCC
Confidence            999999764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=5.3e-19  Score=92.19  Aligned_cols=67  Identities=18%  Similarity=0.350  Sum_probs=61.1

Q ss_pred             CCcceecCCCCCCccchhHHHHHHH-Hh---hCCCCccCCcCcccccCcchhhhh-hhhcccCccCCCCCcc
Q psy3949          34 HNYRFVCYTCPYHTTYSQSMKSHLR-KH---SGEKPYKCLFCDYHCTQSGPLRRH-MKIKHLMESSNSHDIT  100 (103)
Q Consensus        34 ~~~~~~c~~c~~~~~~~~~l~~h~~-~~---~~~~~~~c~~c~~~f~~~~~l~~h-~~~~~~e~~~~C~~C~  100 (103)
                      +.++|.|..|++.|.....|..|++ .|   .+++||.|..|++.|...+.|..| +++|+||+||.|.++.
T Consensus        15 gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           15 VEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            4459999999999999999999997 58   568999999999999999999999 8999999999998754

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=85.08  Aligned_cols=60  Identities=27%  Similarity=0.582  Sum_probs=57.6

Q ss_pred             CcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccC
Q psy3949          35 NYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS   94 (103)
Q Consensus        35 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~   94 (103)
                      .++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|++++||
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            348999999999999999999999999999999999999999999999999999999987

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.75  E-value=1.5e-18  Score=92.45  Aligned_cols=78  Identities=32%  Similarity=0.633  Sum_probs=73.6

Q ss_pred             Cccc--CCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccC--CcCcccc
Q psy3949           1 VRCQ--YCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC--LFCDYHC   75 (103)
Q Consensus         1 ~~C~--~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c--~~c~~~f   75 (103)
                      |.|+  .|++.|.....|.. +..|.+.     +     +|.|+.|++.|.....|..|++.|.++++|.|  ..|++.|
T Consensus        37 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f  106 (119)
T 2jp9_A           37 YQCDFKDCERRFSRSDQLKRHQRRHTGV-----K-----PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKF  106 (119)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHHCC-----C-----CEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEE
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHHcCCC-----C-----CccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCcccc
Confidence            4687  79999999999999 9999988     8     99999999999999999999999999999999  7899999


Q ss_pred             cCcchhhhhhhhc
Q psy3949          76 TQSGPLRRHMKIK   88 (103)
Q Consensus        76 ~~~~~l~~h~~~~   88 (103)
                      .....|..|+++|
T Consensus       107 ~~~~~L~~H~~~H  119 (119)
T 2jp9_A          107 ARSDELVRHHNMH  119 (119)
T ss_dssp             SSHHHHHHHHHTC
T ss_pred             CCHHHHHHHHhcC
Confidence            9999999999876

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.6e-18  Score=92.02  Aligned_cols=82  Identities=22%  Similarity=0.404  Sum_probs=73.5

Q ss_pred             CcccCCCcccccccCHHH-HHh---hhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCccccc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLS---HTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCT   76 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~---h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~   76 (103)
                      |.|+.|++.|.....|.. +..   |.+.     +     +|.|+.|++.|.....|..|++.|.+++||.|..|++.|.
T Consensus        36 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  105 (124)
T 2dlq_A           36 FECPKCGKCYFRKENLLEHEARNCMNRSE-----Q-----VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM  105 (124)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHCCCCSCC-----C-----CEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEES
T ss_pred             eECCCCCchhcCHHHHHHHHhhhhcCCCC-----C-----CeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhC
Confidence            679999999999999988 765   3444     5     8999999999999999999999999999999999999999


Q ss_pred             Ccchhhhhhhh-cccCc
Q psy3949          77 QSGPLRRHMKI-KHLME   92 (103)
Q Consensus        77 ~~~~l~~h~~~-~~~e~   92 (103)
                      ....|..|++. |.++.
T Consensus       106 ~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A          106 QKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             SHHHHHHHHHHTSSCSS
T ss_pred             CHHHHHHHHHHHCCCCC
Confidence            99999999984 76654

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=2.2e-19  Score=95.35  Aligned_cols=89  Identities=16%  Similarity=0.251  Sum_probs=76.5

Q ss_pred             CcccCCCcccccccCHHH-HHh--hhCCCccccCCCCCcceecCCCCCCc--cchhHHHHHHHHhhCCCCccCCcCcccc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLS--HTKSCTYISRPDHNYRFVCYTCPYHT--TYSQSMKSHLRKHSGEKPYKCLFCDYHC   75 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~--h~~~~~~~~~~~~~~~~~c~~c~~~~--~~~~~l~~h~~~~~~~~~~~c~~c~~~f   75 (103)
                      |.|+.|++.|.....|.. +..  |.+.     ++    .+.|..|++.|  .....|..|++.|.+++||.|..|++.|
T Consensus        20 ~~C~~C~k~f~~~~~L~~H~~~~~h~~~-----~~----~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f   90 (115)
T 2dmi_A           20 FRCKDCSAAYDTLVELTVHMNETGHYRD-----DN----HETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSF   90 (115)
T ss_dssp             EEBSSSSCEESSHHHHHHHHHHTCCCBC-----SC----CCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBC
T ss_pred             EECCccCchhcCHHHHHHHHHHhCcccc-----CC----CccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCcc
Confidence            579999999999999999 887  5544     41    34599999999  8889999999999999999999999999


Q ss_pred             cCcchhhhhhhhcccCccCCCCC
Q psy3949          76 TQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        76 ~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      .....|..|+++|+......++.
T Consensus        91 ~~~~~L~~H~~~hh~~~~~~~~~  113 (115)
T 2dmi_A           91 ESLQDLSVHMIKTKHYQKVSGPS  113 (115)
T ss_dssp             SSHHHHHHHHHHTTTTTCSCCCC
T ss_pred             CCHHHHHHHHHHhCCcccCCCCC
Confidence            99999999999988766655544

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.74  E-value=9.5e-19  Score=88.92  Aligned_cols=67  Identities=30%  Similarity=0.511  Sum_probs=64.4

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHhhCCCCccCC--cCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKHSGEKPYKCL--FCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      +|.|..  |++.|.....|..|+..|.++++|.|.  .|++.|.....|..|+++|+++++|.|++|++.|
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   75 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAF   75 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEE
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCccc
Confidence            799999  999999999999999999999999997  6999999999999999999999999999999976

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=4.5e-19  Score=93.12  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      +|.|..|++.|.....|..|+..|.  ++|.|..|++.|.....|..|++ |+++++|.|++|++.|
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f   79 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTF   79 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEEC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchh
Confidence            8999999999999999999999984  68999999999999999999996 9999999999999987

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.71  E-value=4.7e-19  Score=90.12  Aligned_cols=76  Identities=18%  Similarity=0.258  Sum_probs=44.1

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSG   79 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   79 (103)
                      |.|+.|++.|.....|.. +..|.+.     +     +|.|+.|++.|.....|..|+..|.+ .++.|..|++.|....
T Consensus         4 ~~C~~C~k~f~~~~~L~~H~~~H~~~-----~-----~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~   72 (88)
T 1llm_C            4 FQCRICMRNFSRSDHLTTHIRTHTGE-----K-----PFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNY   72 (88)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHCC-----C-----CEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCccCCHHHHHHHHHHcCCC-----C-----CccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHh
Confidence            345566666665555555 5555555     5     56666666666666666666555543 4555555666666666


Q ss_pred             hhhhhhhh
Q psy3949          80 PLRRHMKI   87 (103)
Q Consensus        80 ~l~~h~~~   87 (103)
                      .|..|++.
T Consensus        73 ~L~~H~~~   80 (88)
T 1llm_C           73 HLENEVAR   80 (88)
T ss_dssp             HHHHHHHH
T ss_pred             hhHHHHHH
Confidence            66666554

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=5.4e-18  Score=87.86  Aligned_cols=80  Identities=20%  Similarity=0.250  Sum_probs=70.5

Q ss_pred             cccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCcc-chhHHHHHHHHhhC-CCCccCCcCcccccCcchhhhh
Q psy3949           8 HSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTT-YSQSMKSHLRKHSG-EKPYKCLFCDYHCTQSGPLRRH   84 (103)
Q Consensus         8 ~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~-~~~~l~~h~~~~~~-~~~~~c~~c~~~f~~~~~l~~h   84 (103)
                      ..+.....+.. +..|.+.     +     +|.|..|++.|. ....|..|++.|.+ +++|.|..|++.|.....|..|
T Consensus         4 ~s~~~~~~~~~h~~~h~~~-----~-----~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H   73 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIHER-----G-----EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH   73 (98)
T ss_dssp             CCCCCCCSCSHHHHTTTTT-----S-----CCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHhccC-----C-----CcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHH
Confidence            34555556667 8889888     8     999999999999 99999999999998 8999999999999999999999


Q ss_pred             hhhcccCccCCCC
Q psy3949          85 MKIKHLMESSNSH   97 (103)
Q Consensus        85 ~~~~~~e~~~~C~   97 (103)
                      +++|++++|..-.
T Consensus        74 ~~~h~~~kp~~~~   86 (98)
T 2gqj_A           74 TMAEHSAKPSDAE   86 (98)
T ss_dssp             HHHHSCSCSSCCC
T ss_pred             HHHHcCCCCCCCC
Confidence            9999999986543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=6.6e-17  Score=83.51  Aligned_cols=77  Identities=17%  Similarity=0.267  Sum_probs=66.7

Q ss_pred             ccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCc-cchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhh-h
Q psy3949           9 SLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHT-TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRH-M   85 (103)
Q Consensus         9 ~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~-~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h-~   85 (103)
                      .|.....+.. +..|.+.     +     +|.|+.|++.| .....|..|++.| ++++|.|..|++.|.....|..| +
T Consensus        15 ~~~~~~~~~~~~~~~~~~-----~-----~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~   83 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDK-----G-----SVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVM   83 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHT-----S-----CEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHhcCC-----C-----CcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhH
Confidence            4555566667 7778877     7     99999999999 8999999999999 99999999999999999999999 8


Q ss_pred             hhcccCccCCC
Q psy3949          86 KIKHLMESSNS   96 (103)
Q Consensus        86 ~~~~~e~~~~C   96 (103)
                      ++|+++..+.+
T Consensus        84 ~~H~~~p~~~~   94 (96)
T 2ctd_A           84 ANHNSLPSGPS   94 (96)
T ss_dssp             HHTCCCSSCSC
T ss_pred             HhcCCCCCCCC
Confidence            88987655544

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.69  E-value=2.3e-17  Score=82.95  Aligned_cols=76  Identities=22%  Similarity=0.492  Sum_probs=68.5

Q ss_pred             Ccc--cCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCC--CCCCccchhHHHHHHHHhhCCCCccCCc---Cc
Q psy3949           1 VRC--QYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYT--CPYHTTYSQSMKSHLRKHSGEKPYKCLF---CD   72 (103)
Q Consensus         1 ~~C--~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~---c~   72 (103)
                      |.|  +.||+.|.....|.. +..|.+.     +     +|.|+.  |++.|.....|..|++.|.+   +.|..   |+
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~   68 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFSHTQQ-----L-----PYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCS   68 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHHTT-----C-----CEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCC
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhCCC-----C-----CeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCC
Confidence            568  889999999999999 9899888     8     899988  99999999999999999988   89988   99


Q ss_pred             ccccCcchhhhhhhhcc
Q psy3949          73 YHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        73 ~~f~~~~~l~~h~~~~~   89 (103)
                      +.|.....|..|+++|+
T Consensus        69 ~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           69 FVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CEESSHHHHHHHHHHCC
T ss_pred             CccCCHHHHHHHHHhcC
Confidence            99999999999998764

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=3.6e-17  Score=79.77  Aligned_cols=61  Identities=28%  Similarity=0.562  Sum_probs=57.6

Q ss_pred             CcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCC
Q psy3949          35 NYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN   95 (103)
Q Consensus        35 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~   95 (103)
                      .++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|++++|..
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            3499999999999999999999999999999999999999999999999999999998853

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.67  E-value=2.4e-17  Score=83.28  Aligned_cols=58  Identities=21%  Similarity=0.338  Sum_probs=53.6

Q ss_pred             CcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhh-hhcccCc
Q psy3949          35 NYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHM-KIKHLME   92 (103)
Q Consensus        35 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~-~~~~~e~   92 (103)
                      .++|.|++|++.|.....|..|++.|.+++||.|..|++.|.....|.+|+ ++|.+|.
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            347999999999999999999999999999999999999999999999997 5688764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.1e-16  Score=78.42  Aligned_cols=57  Identities=35%  Similarity=0.573  Sum_probs=54.9

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCcc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMES   93 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~   93 (103)
                      +|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|+++.+
T Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999999999999999999999999999999998754

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.66  E-value=4.7e-17  Score=77.16  Aligned_cols=54  Identities=19%  Similarity=0.376  Sum_probs=51.1

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      |.|..||+.|.....|.. +++|++.     +     ||.|.+||+.|.....|..|+++|+|++
T Consensus         5 y~C~~C~k~F~~~~~L~~H~~~Ht~e-----k-----p~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            5 FFCNFCGKTYRDASGLSRHRRAHLGY-----R-----PRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHTC-----C-----CEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             ccCCCCCCEeCCHHHHHHHHHHhCCC-----c-----CeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            679999999999999999 9999999     9     9999999999999999999999999874

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.66  E-value=5.8e-17  Score=81.50  Aligned_cols=64  Identities=27%  Similarity=0.491  Sum_probs=60.8

Q ss_pred             ceec--CCCCCCccchhHHHHHHHHhhCCCCccCCc--CcccccCcchhhhhhhhcccCccCCCCC---ccccC
Q psy3949          37 RFVC--YTCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKIKHLMESSNSHD---ITFVM  103 (103)
Q Consensus        37 ~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~e~~~~C~~---C~~~~  103 (103)
                      ||.|  +.|++.|.....|..|++.|.++++|.|..  |++.|.....|..|+++|++   |.|+.   |+++|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f   71 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVG   71 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEE
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCcc
Confidence            5789  999999999999999999999999999988  99999999999999999998   99999   99876

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-16  Score=81.83  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=58.0

Q ss_pred             ceecCCCCCCccchhHHHHHHHH-hhCCCC--------ccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRK-HSGEKP--------YKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~~~--------~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      .+.|..|++.|.....|..|++. |.++++        |.|..|++.|.....|..|+++|++++||.|+.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            46799999999999999999998 998887        899999999999999999999999999999974

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.65  E-value=3.6e-18  Score=86.82  Aligned_cols=66  Identities=27%  Similarity=0.595  Sum_probs=63.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      +|.|..|++.|.....|..|+..|.+++||.|..|++.|.....|..|+++|++ .+|.|+.|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f   68 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELL   68 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999885 889999999875

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.64  E-value=2.4e-16  Score=73.81  Aligned_cols=56  Identities=29%  Similarity=0.742  Sum_probs=52.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      ||.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            47899999999999999999999999999999999999999999999999998876

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=2e-18  Score=84.66  Aligned_cols=68  Identities=15%  Similarity=0.127  Sum_probs=59.8

Q ss_pred             CHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCcc
Q psy3949          15 GFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMES   93 (103)
Q Consensus        15 ~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~   93 (103)
                      .|.. +..|.+.     +     +|.|..|++.|.....|..       +++|.|..|++.|.....|..|+++|++++|
T Consensus         5 ~l~~H~~~h~~~-----~-----~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~   67 (73)
T 2ctu_A            5 SSGKRQKIHLGD-----R-----SQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKT   67 (73)
T ss_dssp             SCCCCCCCCCCC-----S-----EEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCC
T ss_pred             hHHHHHHHhCCC-----C-----CeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCC
Confidence            4444 5566666     6     9999999999999888765       7899999999999999999999999999999


Q ss_pred             CCCCCc
Q psy3949          94 SNSHDI   99 (103)
Q Consensus        94 ~~C~~C   99 (103)
                      |.|++|
T Consensus        68 ~~C~~C   73 (73)
T 2ctu_A           68 SGPSSG   73 (73)
T ss_dssp             SSCCCC
T ss_pred             CCCCCC
Confidence            999988

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=3.6e-16  Score=77.69  Aligned_cols=64  Identities=22%  Similarity=0.527  Sum_probs=59.4

Q ss_pred             cccC--CCcccccccCHHH-HH-hhhCCCccccCCCCCcceecCC--CCCCccchhHHHHHHHHhhCCCCccCCcCcccc
Q psy3949           2 RCQY--CKHSLSVSNGFEI-VL-SHTKSCTYISRPDHNYRFVCYT--CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC   75 (103)
Q Consensus         2 ~C~~--C~~~f~~~~~l~~-~~-~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   75 (103)
                      .|..  |++.|.....|.. +. .|.+.     +     +|.|..  |++.|.....|..|++.|.++++|.|..|++.|
T Consensus         9 ~C~~~~C~~~f~~~~~L~~H~~~~H~~~-----~-----~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQ-----K-----SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHGGGSC-----C-----CEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             cCCCCCCcCccCCHHHHHHHHHHHhCCC-----C-----CeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            4555  9999999999999 88 79888     8     999999  999999999999999999999999999999987

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.63  E-value=2.8e-16  Score=73.55  Aligned_cols=54  Identities=39%  Similarity=0.730  Sum_probs=50.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhccc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHL   90 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   90 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|++
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            899999999999999999999999999999999999999999999999998764

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.59  E-value=1.4e-16  Score=86.00  Aligned_cols=77  Identities=25%  Similarity=0.326  Sum_probs=59.8

Q ss_pred             ccCCCcccc------cccCHHHHHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCccccc
Q psy3949           3 CQYCKHSLS------VSNGFEIVLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCT   76 (103)
Q Consensus         3 C~~C~~~f~------~~~~l~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~   76 (103)
                      |+.|++.|.      ....|.....|.+.     +     +|.|+.|++.|.....|..|++.|  ++||.|..|++.|.
T Consensus        44 c~~~~~~~~~~~~~~~~~~l~~h~~h~~~-----~-----~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~  111 (129)
T 2wbt_A           44 RAIVKTLIHNPQLLDESSYLYRLLASKAI-----S-----QFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFT  111 (129)
T ss_dssp             HHHHHHHHHCGGGTTTHHHHHHHHHHHHH-----C-----SEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCS
T ss_pred             chhhhcccCCCcccCCHHHHHHHHHhCCC-----C-----CeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccC
Confidence            445555554      33333333357777     7     899999999999999999999888  78899999999999


Q ss_pred             CcchhhhhhhhcccC
Q psy3949          77 QSGPLRRHMKIKHLM   91 (103)
Q Consensus        77 ~~~~l~~h~~~~~~e   91 (103)
                      ..+.|..|+++|++.
T Consensus       112 ~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          112 STDSALDHVCKKHNI  126 (129)
T ss_dssp             SHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHCCc
Confidence            999999999998875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=5.7e-16  Score=74.57  Aligned_cols=54  Identities=28%  Similarity=0.472  Sum_probs=51.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHH-h-hCCCCccCCcCcccccCcchhhhhhhhccc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRK-H-SGEKPYKCLFCDYHCTQSGPLRRHMKIKHL   90 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~-~-~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   90 (103)
                      +|.|+.|++.|.....|..|+.. | .++++|.|..|++.|...+.|..|++++++
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            99999999999999999999987 7 588999999999999999999999999875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.7e-15  Score=78.13  Aligned_cols=58  Identities=12%  Similarity=0.045  Sum_probs=53.3

Q ss_pred             CCccchhHHHHHHHHhhCCCCccCCcCcccc-cCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          45 YHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC-TQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        45 ~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f-~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      ..+.....+..|+..+.++++|.|..|++.| .....|..|+++| ++++|.|.+||+.|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCee
Confidence            3456677888999999999999999999999 9999999999999 99999999999987

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=3.5e-15  Score=74.01  Aligned_cols=61  Identities=18%  Similarity=0.384  Sum_probs=55.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhC---CCCccCCcCcccccCcchhhhhhh-hcccCccCCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSG---EKPYKCLFCDYHCTQSGPLRRHMK-IKHLMESSNSH   97 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~---~~~~~c~~c~~~f~~~~~l~~h~~-~~~~e~~~~C~   97 (103)
                      +|.|..|++.|.....|..|++.|.+   +++|.|..|++.|.....|..|++ .|.++++....
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             CeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            99999999999999999999999986   899999999999999999999995 57788776543

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.57  E-value=5.4e-16  Score=69.68  Aligned_cols=44  Identities=25%  Similarity=0.397  Sum_probs=40.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=5.3e-16  Score=69.67  Aligned_cols=44  Identities=32%  Similarity=0.390  Sum_probs=40.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.57  E-value=5.1e-16  Score=69.71  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=40.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.57  E-value=5.9e-16  Score=69.51  Aligned_cols=44  Identities=27%  Similarity=0.355  Sum_probs=40.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            56678899999999999999999999999999999999999987

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=3.2e-15  Score=70.63  Aligned_cols=56  Identities=36%  Similarity=0.615  Sum_probs=51.9

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhh-hhcccCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHM-KIKHLME   92 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~-~~~~~e~   92 (103)
                      +|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+ ++|.++.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            7899999999999999999999999999999999999999999999996 6787753

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=6.5e-16  Score=69.40  Aligned_cols=44  Identities=25%  Similarity=0.257  Sum_probs=40.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45678899999999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=5.3e-16  Score=69.68  Aligned_cols=44  Identities=25%  Similarity=0.404  Sum_probs=40.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=5.9e-16  Score=69.55  Aligned_cols=44  Identities=23%  Similarity=0.282  Sum_probs=40.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=6.6e-16  Score=69.35  Aligned_cols=44  Identities=25%  Similarity=0.348  Sum_probs=41.0

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=7.4e-16  Score=69.21  Aligned_cols=44  Identities=25%  Similarity=0.314  Sum_probs=40.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=6.5e-16  Score=69.39  Aligned_cols=44  Identities=25%  Similarity=0.284  Sum_probs=40.5

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55678889999999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=5.1e-16  Score=69.74  Aligned_cols=44  Identities=30%  Similarity=0.398  Sum_probs=40.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.56  E-value=6.5e-16  Score=69.39  Aligned_cols=44  Identities=27%  Similarity=0.351  Sum_probs=40.4

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56678889999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=6.3e-16  Score=69.43  Aligned_cols=44  Identities=23%  Similarity=0.357  Sum_probs=40.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=6.5e-16  Score=69.38  Aligned_cols=44  Identities=27%  Similarity=0.425  Sum_probs=40.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=6.8e-16  Score=69.29  Aligned_cols=44  Identities=23%  Similarity=0.264  Sum_probs=40.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=6.1e-16  Score=69.45  Aligned_cols=44  Identities=20%  Similarity=0.281  Sum_probs=40.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=6.7e-16  Score=69.32  Aligned_cols=44  Identities=30%  Similarity=0.385  Sum_probs=40.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55678899999999999999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.56  E-value=5.9e-16  Score=69.55  Aligned_cols=44  Identities=25%  Similarity=0.384  Sum_probs=40.1

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55678889999999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=5.5e-16  Score=69.60  Aligned_cols=44  Identities=27%  Similarity=0.326  Sum_probs=40.0

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678889999999999999999999999999999999999987

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=2.9e-15  Score=74.17  Aligned_cols=58  Identities=24%  Similarity=0.439  Sum_probs=54.9

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccC
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC   68 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c   68 (103)
                      |.|+.|++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|++.|.+++||.|
T Consensus        19 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           19 YKCDECGKSFSHSSDLSKHRRTHTGE-----K-----PYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SBCSSSCCBCSCHHHHHHHHTTTCCS-----C-----SEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             EECCCCCcccCCHHHHHHHHHHcCCC-----c-----CeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            679999999999999999 9999888     8     99999999999999999999999999999876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=5.4e-16  Score=69.02  Aligned_cols=44  Identities=23%  Similarity=0.316  Sum_probs=38.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34567888999999999999999999999999999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.55  E-value=7.9e-16  Score=69.07  Aligned_cols=44  Identities=23%  Similarity=0.336  Sum_probs=40.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=6.8e-16  Score=69.31  Aligned_cols=44  Identities=25%  Similarity=0.397  Sum_probs=40.2

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55678889999999999999999999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=8.9e-16  Score=68.92  Aligned_cols=44  Identities=30%  Similarity=0.383  Sum_probs=40.5

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=9.2e-16  Score=68.85  Aligned_cols=44  Identities=32%  Similarity=0.425  Sum_probs=40.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=5.9e-16  Score=69.49  Aligned_cols=44  Identities=32%  Similarity=0.436  Sum_probs=40.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=8.3e-16  Score=69.00  Aligned_cols=44  Identities=23%  Similarity=0.220  Sum_probs=40.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=7.5e-16  Score=69.15  Aligned_cols=44  Identities=32%  Similarity=0.452  Sum_probs=40.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=6.7e-16  Score=69.36  Aligned_cols=44  Identities=20%  Similarity=0.189  Sum_probs=40.5

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55678889999999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=5.7e-16  Score=69.60  Aligned_cols=44  Identities=27%  Similarity=0.360  Sum_probs=39.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56678889999999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=6.2e-16  Score=69.45  Aligned_cols=44  Identities=20%  Similarity=0.288  Sum_probs=39.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            55678888999999999999999999999999999999999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=6.4e-16  Score=69.40  Aligned_cols=44  Identities=32%  Similarity=0.419  Sum_probs=40.1

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55678889999999999999999999999999999999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.55  E-value=2.5e-15  Score=69.70  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhh-hcccCccCCCCCccccC
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMK-IKHLMESSNSHDITFVM  103 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~~e~~~~C~~C~~~~  103 (103)
                      +.+++||.|..|++.|.....|..|++ +|++++||.|++|++.|
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F   51 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP   51 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Confidence            456677777778877777777888876 77778888888887776

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=6.3e-16  Score=69.43  Aligned_cols=44  Identities=23%  Similarity=0.258  Sum_probs=39.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678889999999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=8.5e-16  Score=68.96  Aligned_cols=44  Identities=32%  Similarity=0.354  Sum_probs=40.0

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56678889999999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=6e-16  Score=69.51  Aligned_cols=44  Identities=27%  Similarity=0.405  Sum_probs=39.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55678889999999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=7.9e-16  Score=69.07  Aligned_cols=44  Identities=23%  Similarity=0.215  Sum_probs=40.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55678889999999999999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=7.8e-16  Score=69.10  Aligned_cols=44  Identities=30%  Similarity=0.390  Sum_probs=39.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            55678888999999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=7.6e-16  Score=69.15  Aligned_cols=44  Identities=34%  Similarity=0.417  Sum_probs=39.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            45678889999999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=1e-15  Score=68.70  Aligned_cols=44  Identities=30%  Similarity=0.420  Sum_probs=41.0

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778899999999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.54  E-value=1.2e-15  Score=68.54  Aligned_cols=44  Identities=20%  Similarity=0.295  Sum_probs=40.1

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45678889999999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=9.6e-16  Score=68.82  Aligned_cols=44  Identities=23%  Similarity=0.255  Sum_probs=40.1

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45678889999999999999999999999999999999999987

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=8.5e-16  Score=79.50  Aligned_cols=55  Identities=11%  Similarity=0.115  Sum_probs=50.4

Q ss_pred             chhHHHHHHHHhhCCCCccCCcCccccc-Ccchhhhhhhhccc-CccCCCCCccccC
Q psy3949          49 YSQSMKSHLRKHSGEKPYKCLFCDYHCT-QSGPLRRHMKIKHL-MESSNSHDITFVM  103 (103)
Q Consensus        49 ~~~~l~~h~~~~~~~~~~~c~~c~~~f~-~~~~l~~h~~~~~~-e~~~~C~~C~~~~  103 (103)
                      ....+..|++.|.++++|.|..|++.|. ....|..|+++|++ +++|.|++|++.|
T Consensus         8 ~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F   64 (98)
T 2gqj_A            8 PGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQF   64 (98)
T ss_dssp             CCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCC
T ss_pred             CCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCcc
Confidence            3445568899999999999999999999 99999999999999 9999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=8.3e-16  Score=69.08  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=39.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45678889999999999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=9.6e-16  Score=68.81  Aligned_cols=44  Identities=20%  Similarity=0.089  Sum_probs=39.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45678889999999999999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=7.4e-16  Score=69.19  Aligned_cols=44  Identities=27%  Similarity=0.319  Sum_probs=40.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999987

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=2.9e-15  Score=74.17  Aligned_cols=58  Identities=29%  Similarity=0.574  Sum_probs=51.5

Q ss_pred             ceecCCCCCCccchhHHHHHHH-HhhCC-CCccCCcCcccccCcchhhhhhhhcc-cCccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLR-KHSGE-KPYKCLFCDYHCTQSGPLRRHMKIKH-LMESS   94 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~-~~~~~-~~~~c~~c~~~f~~~~~l~~h~~~~~-~e~~~   94 (103)
                      +|.|+.|++.|.....|..|+. .|.++ ++|.|..|++.|.....|..|+++++ .+.|.
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             CeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999997 67764 89999999999999999999999854 45553

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.8e-15  Score=67.90  Aligned_cols=44  Identities=30%  Similarity=0.388  Sum_probs=40.2

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678899999999999999999999999999999999999875

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.2e-15  Score=68.51  Aligned_cols=44  Identities=27%  Similarity=0.338  Sum_probs=38.5

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45567888899999999999999999999999999999999887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=9.5e-16  Score=68.83  Aligned_cols=44  Identities=27%  Similarity=0.331  Sum_probs=39.4

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            45678888999999999999999999999999999999999887

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=1.3e-14  Score=71.29  Aligned_cols=56  Identities=30%  Similarity=0.624  Sum_probs=53.0

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPY   66 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   66 (103)
                      |.|..|++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|++.|.+++||
T Consensus        18 ~~C~~C~k~f~~~~~l~~H~~~H~~~-----~-----~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           18 YKCDRCQASFRYKGNLASHKTVHTGE-----K-----PYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             BCCTTSSCCBSCHHHHHHHHHHHCCC-----C-----SEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             eECCCCCceeCCHHHHHHHHHHcCCC-----C-----CEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            679999999999999999 9999988     8     999999999999999999999999999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=2.1e-15  Score=67.87  Aligned_cols=44  Identities=25%  Similarity=0.389  Sum_probs=40.4

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhh-hcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK-IKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~~e~~~~C~~C   99 (103)
                      |++.|.+++||.|..|++.|...+.|..|++ +|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            5567889999999999999999999999999 9999999999987

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.52  E-value=5.1e-15  Score=67.01  Aligned_cols=42  Identities=17%  Similarity=0.073  Sum_probs=37.8

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccc
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITF  101 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~  101 (103)
                      +.++++|.|..|++.|.....|..|+++|++++||.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            566788999999999999999999999999999999999986

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.50  E-value=3.9e-15  Score=75.14  Aligned_cols=45  Identities=13%  Similarity=0.231  Sum_probs=42.0

Q ss_pred             HhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .+...+++.|.+|++.|.....|.+|+++|++++||.|++|+++|
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F   66 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF   66 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEE
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEe
Confidence            456678899999999999999999999999999999999999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=2.4e-14  Score=68.91  Aligned_cols=57  Identities=18%  Similarity=0.232  Sum_probs=52.8

Q ss_pred             CcceecCCCCCCccchhHHHHHHHHhhCCCCccCC-cCcccccCcchhhhhhhhcccCcc
Q psy3949          35 NYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL-FCDYHCTQSGPLRRHMKIKHLMES   93 (103)
Q Consensus        35 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~-~c~~~f~~~~~l~~h~~~~~~e~~   93 (103)
                      .++|.|..|++.|. ...|..|++. .+++||.|. .|++.|...+.|..|+++|..+++
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            34899999999999 9999999998 999999999 999999999999999999987765

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=3.6e-15  Score=66.91  Aligned_cols=44  Identities=30%  Similarity=0.377  Sum_probs=38.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45678888999999999999999999999999999999999875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.48  E-value=1.1e-14  Score=65.01  Aligned_cols=42  Identities=21%  Similarity=0.416  Sum_probs=37.9

Q ss_pred             HhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCcc
Q psy3949          59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDIT  100 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~  100 (103)
                      .|.+++||.|..|++.|.....|..|+++|+++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            467888999999999999999999999999999999999986

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=6e-15  Score=66.14  Aligned_cols=43  Identities=28%  Similarity=0.397  Sum_probs=38.9

Q ss_pred             HHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          57 LRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        57 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      ++.|.++++|.|..|++.|.....|..|+++|++++||+|++|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3467888999999999999999999999999999999999987

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=8.8e-15  Score=76.18  Aligned_cols=62  Identities=27%  Similarity=0.591  Sum_probs=55.2

Q ss_pred             CcccCCCcccccccCHHH-HH-hh---hCCCccccCCCCCcceecCCCCCCccchhHHHHH-HHHhhCCCCccCCcCc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VL-SH---TKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSH-LRKHSGEKPYKCLFCD   72 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~-~h---~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~~~~~c~~c~   72 (103)
                      |.|..||+.|.....|.. ++ .|   .+.     +     +|.|..|++.|.....|..| ++.|.+++||.|..+.
T Consensus        19 y~C~~Cgk~F~~~~~L~~H~r~~H~~~~~e-----k-----pf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLN-----S-----SYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             EECSSCSCEESCHHHHHHHHHHHCSSCCCS-----C-----CEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             cCCCCCCCccCCHHHHHHHHHhhCCCCCCC-----C-----CcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            579999999999999999 86 58   445     6     89999999999999999999 7999999999998644

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=6.3e-15  Score=66.11  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=38.1

Q ss_pred             HHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        58 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      +.|.++++|.|..|++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            457888999999999999999999999999999999999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=3.6e-14  Score=69.43  Aligned_cols=55  Identities=25%  Similarity=0.631  Sum_probs=51.3

Q ss_pred             CcceecC--CCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcc
Q psy3949          35 NYRFVCY--TCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        35 ~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      .++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|+
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            3489997  599999999999999999999999999999999999999999999874

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.47  E-value=8.3e-15  Score=64.41  Aligned_cols=42  Identities=24%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            345678889999999999999999999999999999999985

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=9.9e-15  Score=65.41  Aligned_cols=43  Identities=35%  Similarity=0.441  Sum_probs=38.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            5567888999999999999999999999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.1e-14  Score=65.33  Aligned_cols=43  Identities=26%  Similarity=0.443  Sum_probs=38.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567888999999999999999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.2e-14  Score=65.10  Aligned_cols=43  Identities=28%  Similarity=0.444  Sum_probs=38.4

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5567888999999999999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=8.6e-15  Score=65.65  Aligned_cols=43  Identities=19%  Similarity=0.356  Sum_probs=38.1

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667888899999999999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.2e-14  Score=65.12  Aligned_cols=43  Identities=30%  Similarity=0.431  Sum_probs=38.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            5567888999999999999999999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.46  E-value=8.7e-15  Score=65.62  Aligned_cols=43  Identities=26%  Similarity=0.414  Sum_probs=37.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||+|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5567888899999999999999999999999999999999874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.3e-14  Score=65.10  Aligned_cols=43  Identities=28%  Similarity=0.424  Sum_probs=38.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            4567888999999999999999999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.2e-14  Score=65.17  Aligned_cols=43  Identities=35%  Similarity=0.452  Sum_probs=38.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            5567888999999999999999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.4e-14  Score=64.90  Aligned_cols=43  Identities=26%  Similarity=0.410  Sum_probs=38.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888999999999999999999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.1e-14  Score=65.35  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=38.2

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567888999999999999999999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.5e-14  Score=64.87  Aligned_cols=43  Identities=28%  Similarity=0.397  Sum_probs=38.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567888999999999999999999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.3e-14  Score=65.01  Aligned_cols=43  Identities=26%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||+|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888999999999999999999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.4e-14  Score=64.95  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=38.4

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||+|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            5667888999999999999999999999999999999999974

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.45  E-value=2.5e-15  Score=81.08  Aligned_cols=64  Identities=13%  Similarity=0.138  Sum_probs=53.5

Q ss_pred             ceecCCCCCCcc------chhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVCYTCPYHTT------YSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c~~c~~~~~------~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .+.|+.|++.|.      ....|..|+ .|.+++||.|..|++.|.....|..|+++|  ++||.|++|++.|
T Consensus        41 ~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f  110 (129)
T 2wbt_A           41 RLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEF  110 (129)
T ss_dssp             HHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBC
T ss_pred             cccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCccc
Confidence            566777665555      445555555 688899999999999999999999999999  8999999999987

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.3e-14  Score=64.97  Aligned_cols=43  Identities=21%  Similarity=0.331  Sum_probs=38.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567888999999999999999999999999999999999974

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.45  E-value=1.4e-15  Score=72.52  Aligned_cols=41  Identities=17%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcch
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGP   80 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~   80 (103)
                      +|.|+.|++.|.....|.   ..|.+++||.|..|++.|....+
T Consensus        14 ~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A           14 SFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             EEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             CccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            555555555555444443   34555555555555555544433

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.3e-14  Score=65.04  Aligned_cols=43  Identities=30%  Similarity=0.458  Sum_probs=38.1

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567888899999999999999999999999999999999874

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.1e-14  Score=65.23  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=37.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567888899999999999999999999999999999999874

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.1e-14  Score=65.30  Aligned_cols=43  Identities=30%  Similarity=0.460  Sum_probs=37.3

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567888889999999999999999999999999999999874

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=70.84  Aligned_cols=64  Identities=20%  Similarity=0.239  Sum_probs=53.7

Q ss_pred             CcccCCCcccccccCHHH-HHh-hhCCCccccCCCCC---cceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLS-HTKSCTYISRPDHN---YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~-h~~~~~~~~~~~~~---~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +.|..|++.|.....|.. +.. |.+.     ++...   ..|.|..|++.|.....|..|+++|.+++||.|.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~-----~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGG-----PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCC-----TTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCC-----CCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            458999999999999999 887 8877     51000   0189999999999999999999999999999885

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=2.1e-14  Score=64.37  Aligned_cols=43  Identities=23%  Similarity=0.458  Sum_probs=38.5

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||+|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556888999999999999999999999999999999999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.44  E-value=1.3e-14  Score=67.25  Aligned_cols=51  Identities=22%  Similarity=0.399  Sum_probs=43.5

Q ss_pred             CCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCC
Q psy3949          45 YHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN   95 (103)
Q Consensus        45 ~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~   95 (103)
                      +.|.....|..|++.|.++++|.|..|++.|...+.|..|+++|++++||.
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            456667777888888999999999999999999999999999999998874

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.7e-14  Score=63.32  Aligned_cols=41  Identities=29%  Similarity=0.509  Sum_probs=36.2

Q ss_pred             HHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          57 LRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        57 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      ++.|.+++||.|..|++.|...+.|..|+++|++++||+|.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45678889999999999999999999999999999999884

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.3e-14  Score=64.99  Aligned_cols=43  Identities=26%  Similarity=0.431  Sum_probs=37.0

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5567888889999999999999999999999999999998874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.6e-14  Score=64.04  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=38.2

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            566788899999999999999999999999999999999985

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=2.3e-15  Score=74.51  Aligned_cols=50  Identities=34%  Similarity=0.531  Sum_probs=45.0

Q ss_pred             HHHHHHhhCCCCccCCcCcccccCcchhhhhhh-hcccC-ccCCCCCccccC
Q psy3949          54 KSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK-IKHLM-ESSNSHDITFVM  103 (103)
Q Consensus        54 ~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~~e-~~~~C~~C~~~~  103 (103)
                      ..|++.|.+++||.|..|++.|.....|..|++ .|.++ ++|.|++|++.|
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f   55 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI   55 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEE
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCcc
Confidence            357788999999999999999999999999997 57775 899999999986

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.3e-14  Score=65.02  Aligned_cols=43  Identities=28%  Similarity=0.369  Sum_probs=37.3

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            5567888889999999999999999999999999999999874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.8e-14  Score=64.57  Aligned_cols=43  Identities=28%  Similarity=0.377  Sum_probs=38.4

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5567888999999999999999999999999999999999973

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.9e-14  Score=63.17  Aligned_cols=41  Identities=29%  Similarity=0.522  Sum_probs=37.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNS   96 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C   96 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            45678889999999999999999999999999999999988

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.9e-14  Score=64.51  Aligned_cols=43  Identities=28%  Similarity=0.357  Sum_probs=36.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4566788889999999999999999999999999999998874

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.8e-14  Score=64.50  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=38.4

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567888999999999999999999999999999999999973

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.9e-14  Score=63.83  Aligned_cols=42  Identities=24%  Similarity=0.341  Sum_probs=37.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            556788899999999999999999999999999999999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.3e-14  Score=65.10  Aligned_cols=43  Identities=26%  Similarity=0.458  Sum_probs=37.8

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5567888899999999999999999999999999999999874

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=2.6e-14  Score=63.42  Aligned_cols=42  Identities=29%  Similarity=0.401  Sum_probs=38.0

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||+|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            556788899999999999999999999999999999999985

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.6e-14  Score=64.09  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=38.5

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            566788999999999999999999999999999999999985

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.43  E-value=1.4e-13  Score=64.20  Aligned_cols=54  Identities=17%  Similarity=0.413  Sum_probs=50.5

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      |.|+.|++.|.....|.. +..|.+.     +     +|.|+.|++.|.....|..|++.|.+++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDV-----R-----PYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC-----C-----CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCC-----C-----CccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            689999999999999999 9999988     8     9999999999999999999999988764

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.1e-14  Score=69.96  Aligned_cols=46  Identities=17%  Similarity=0.223  Sum_probs=42.5

Q ss_pred             HHhhCCCCccCCcCcccccCcchhhhhhhh-c-ccCccCCCCCccccC
Q psy3949          58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKI-K-HLMESSNSHDITFVM  103 (103)
Q Consensus        58 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~-~-~~e~~~~C~~C~~~~  103 (103)
                      +.|.+++||.|..|++.|.....|..|+++ | .+++||.|+.|++.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f   50 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF   50 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEE
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCcc
Confidence            467889999999999999999999999998 7 589999999999986

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=2.7e-14  Score=63.35  Aligned_cols=42  Identities=19%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            556788889999999999999999999999999999999985

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=3.2e-14  Score=63.75  Aligned_cols=43  Identities=26%  Similarity=0.304  Sum_probs=38.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhccc-CccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHL-MESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~-e~~~~C~~   98 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++ ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55678889999999999999999999999999999 99999973

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=3e-14  Score=62.62  Aligned_cols=41  Identities=27%  Similarity=0.505  Sum_probs=36.7

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNS   96 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C   96 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45568888999999999999999999999999999999987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=2.6e-14  Score=63.99  Aligned_cols=43  Identities=26%  Similarity=0.400  Sum_probs=38.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      |++.|.++++|.|..|++.|...+.|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888999999999999999999999999999999999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=2.5e-14  Score=64.07  Aligned_cols=42  Identities=24%  Similarity=0.453  Sum_probs=37.6

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566788899999999999999999999999999999999986

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.9e-13  Score=66.36  Aligned_cols=56  Identities=25%  Similarity=0.517  Sum_probs=52.4

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPY   66 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   66 (103)
                      |.|..|++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|++.|.+++|.
T Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~H~~~-----~-----~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A           10 EKCSECSYSCSSKAALRIHERIHCTD-----R-----PFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGCCS-----C-----SEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCC-----C-----CEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            579999999999999999 9999988     8     999999999999999999999999998874

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=2.7e-14  Score=64.00  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=36.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456788889999999999999999999999999999999986

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=2.2e-14  Score=63.04  Aligned_cols=41  Identities=34%  Similarity=0.497  Sum_probs=35.0

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNS   96 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C   96 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45567888889999999999999999999988999998887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.40  E-value=3.6e-14  Score=62.29  Aligned_cols=41  Identities=29%  Similarity=0.408  Sum_probs=34.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNS   96 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C   96 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||+|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            34567788889999999999999999999989999999887

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=4e-14  Score=62.84  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=35.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.++++|.|..|++.|.....|..|+++|++++||+|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            445677888899999999999999999999999999999885

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=3.9e-14  Score=70.18  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=41.5

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhccc---CccCCCCCccccC
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHL---MESSNSHDITFVM  103 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~---e~~~~C~~C~~~~  103 (103)
                      |.++++|.|..|++.|.....|..|+++|++   +++|.|++|++.|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f   48 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF   48 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEE
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchh
Confidence            6789999999999999999999999999996   8999999999986

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=5e-14  Score=63.54  Aligned_cols=43  Identities=26%  Similarity=0.453  Sum_probs=38.3

Q ss_pred             HHHhhCCCCccCC--cCcccccCcchhhhhhhhcccCccCCCCCc
Q psy3949          57 LRKHSGEKPYKCL--FCDYHCTQSGPLRRHMKIKHLMESSNSHDI   99 (103)
Q Consensus        57 ~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C   99 (103)
                      .+.|.++++|.|.  .|++.|.....|..|+++|++++||+|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3467888999997  899999999999999999999999999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.39  E-value=5e-13  Score=65.14  Aligned_cols=56  Identities=30%  Similarity=0.637  Sum_probs=50.8

Q ss_pred             CCCcceecCC--CCCCccchhHHHHHHHHhhCCCCccCCc--CcccccCcchhhhhhhhc
Q psy3949          33 DHNYRFVCYT--CPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        33 ~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~   88 (103)
                      +..++|.|..  |++.|.....|..|++.|.++++|.|..  |++.|.....|..|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3345899998  9999999999999999999999999964  999999999999999875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=5.6e-13  Score=66.91  Aligned_cols=69  Identities=14%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccc
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC   75 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   75 (103)
                      |.|..|++.|.....|.. +..|.+.     . ...++|.|..|++.|.....|..|+..|.+++++.|..|+..+
T Consensus        16 ~~C~~C~~~f~~~~~l~~H~~~~~~~-----~-~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           16 YACSHCDKTFRQKQLLDMHFKRYHDP-----N-FVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTTCS-----S-CCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CcCCCCCCccCCHHHHHHHHHHhcCC-----c-CCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            579999999999999998 7766543     1 1112799999999999999999999999999999999998754

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4.3e-14  Score=62.69  Aligned_cols=42  Identities=26%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456788899999999999999999999999999999999883

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.5e-13  Score=60.70  Aligned_cols=40  Identities=28%  Similarity=0.439  Sum_probs=33.2

Q ss_pred             HhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      .|.++++|.|..|++.|...+.|..|+++|++++||.|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            4667788888888888888888888888888888888864

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.4e-13  Score=61.63  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=34.4

Q ss_pred             HHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        58 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      +.|.++++|.|..|++.|.....|..|+++|++++||+|+.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            45777888888888888888888888888888888888863

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=6.2e-13  Score=64.87  Aligned_cols=54  Identities=20%  Similarity=0.353  Sum_probs=50.5

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      |.|+.|++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|++.|.++.
T Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           15 YGCVECGKAFSRSSILVQHQRVHTGE-----K-----PYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             EECSSSCCEESSHHHHHHHHHGGGCS-----C-----CEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             ccCCCCCCccCCHHHHHHHHHhcCCC-----C-----CeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            579999999999999999 9999988     8     9999999999999999999999998864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=6.2e-14  Score=62.48  Aligned_cols=41  Identities=27%  Similarity=0.503  Sum_probs=36.3

Q ss_pred             HHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCC
Q psy3949          58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHD   98 (103)
Q Consensus        58 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~   98 (103)
                      +.|.++++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            45778889999999999999999999999999999999974

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.37  E-value=7e-13  Score=61.73  Aligned_cols=51  Identities=25%  Similarity=0.602  Sum_probs=48.0

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhh
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHS   61 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   61 (103)
                      |.|+.|++.|.....|.. +..|.+.     +     +|.|+.|++.|.....|..|++.|.
T Consensus         5 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            5 RECSYCGKFFRSNYYLNIHLRTHTGE-----K-----PYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             CBCTTTCCBCSCHHHHHHHHHHHHCC-----C-----CEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             ccCCCCcchhCChHHHHHHHHHcCCC-----C-----CcCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999 9999998     8     9999999999999999999998774

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.1e-13  Score=61.41  Aligned_cols=42  Identities=26%  Similarity=0.310  Sum_probs=36.9

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |++.|.+++||.|..|++.|...+.|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            456788889999999999999999999999999999999873

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.8e-13  Score=59.09  Aligned_cols=38  Identities=29%  Similarity=0.467  Sum_probs=33.8

Q ss_pred             HhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCC
Q psy3949          59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNS   96 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C   96 (103)
                      .|.+++||.|..|++.|.....|..|+++|++++||+|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            46788899999999999999999999999999999987

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=2.1e-12  Score=60.72  Aligned_cols=53  Identities=23%  Similarity=0.451  Sum_probs=48.4

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHH-HHhhCC
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHL-RKHSGE   63 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~-~~~~~~   63 (103)
                      |.|+.|++.|.....|.. +..|.+.     +     +|.|+.|++.|.....|..|+ ..|.++
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----~-----~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRSHTNE-----K-----PYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSS-----C-----SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCCCCccccCCHHHHHHHHHHhCCC-----C-----CccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            689999999999999999 9999988     8     999999999999999999997 567664

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=4.9e-13  Score=65.32  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=41.9

Q ss_pred             HhhCCCCccCC--cCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          59 KHSGEKPYKCL--FCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        59 ~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .+.++++|.|.  .|++.|.....|..|+++|.++++|.|++||+.|
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   59 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF   59 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchh
Confidence            46788999997  6999999999999999999999999999999986

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.27  E-value=4.6e-12  Score=58.48  Aligned_cols=44  Identities=18%  Similarity=0.440  Sum_probs=40.3

Q ss_pred             CCcceecCCCCCCccchhHHHHHHH-HhhCCCCccCCcCcccccC
Q psy3949          34 HNYRFVCYTCPYHTTYSQSMKSHLR-KHSGEKPYKCLFCDYHCTQ   77 (103)
Q Consensus        34 ~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~c~~c~~~f~~   77 (103)
                      +.++|.|+.|++.|.....|..|++ .|.+++||.|..|++.|.+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            3449999999999999999999997 8999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.20  E-value=7.4e-12  Score=53.89  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=27.6

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccCccCCC
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNS   96 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C   96 (103)
                      |.+++||.|..|++.|...+.|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            3466777787788888877788888877888777765

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=8.5e-12  Score=55.06  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1e-11  Score=55.31  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=33.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A           12 PHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1e-11  Score=55.32  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.1e-11  Score=55.25  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=33.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A           12 PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.1e-11  Score=55.25  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A           12 PYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.2e-11  Score=55.08  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A           12 PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=1.2e-11  Score=59.46  Aligned_cols=39  Identities=23%  Similarity=0.305  Sum_probs=32.0

Q ss_pred             hhCCCCccCCc--CcccccCcchhhhhh-hhcccCccCCCCC
Q psy3949          60 HSGEKPYKCLF--CDYHCTQSGPLRRHM-KIKHLMESSNSHD   98 (103)
Q Consensus        60 ~~~~~~~~c~~--c~~~f~~~~~l~~h~-~~~~~e~~~~C~~   98 (103)
                      .++++||.|..  |+++|...+.|.+|+ ++|++++||-|.+
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            46788888864  999999999999997 5788999888764

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.19  E-value=1.2e-11  Score=55.14  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             ceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            89999999999999999999999999999999876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.1e-11  Score=55.29  Aligned_cols=35  Identities=23%  Similarity=0.268  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A           12 PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.19  E-value=1.1e-11  Score=55.24  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A           12 PFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             SBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.1e-11  Score=55.20  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A           12 PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.3e-11  Score=54.91  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1e-11  Score=55.29  Aligned_cols=35  Identities=31%  Similarity=0.414  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A           12 PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.2e-11  Score=55.05  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A           12 PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.3e-11  Score=55.00  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|+..|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            89999999999999999999999999999999876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.18  E-value=1.3e-11  Score=55.01  Aligned_cols=35  Identities=26%  Similarity=0.442  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A           12 RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.1e-11  Score=55.24  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A           12 PYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.6e-11  Score=54.68  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|+..|.+++||.|.+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999875

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.4e-11  Score=54.83  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            89999999999999999999999999999999876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.1e-11  Score=55.18  Aligned_cols=35  Identities=34%  Similarity=0.376  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.4e-11  Score=54.83  Aligned_cols=35  Identities=20%  Similarity=0.087  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1e-11  Score=55.33  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.2e-11  Score=55.05  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A           12 PYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.1e-11  Score=55.21  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.6e-11  Score=54.67  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A           12 PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.2e-11  Score=55.09  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            89999999999999999999999999999999876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.4e-11  Score=54.87  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|+..|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A           12 PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.17  E-value=1.3e-11  Score=55.04  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A           12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.2e-11  Score=55.09  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.16  E-value=1.3e-11  Score=54.90  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A           12 PYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.2e-11  Score=55.11  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A           12 PYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=55.19  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A           12 PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.16  E-value=1.3e-11  Score=54.99  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=33.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            89999999999999999999999999999999876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.2e-11  Score=55.05  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A           12 PYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.16  E-value=1.1e-11  Score=55.23  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.2e-11  Score=55.07  Aligned_cols=35  Identities=29%  Similarity=0.400  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            89999999999999999999999999999999876

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.1e-11  Score=55.23  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A           12 SHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=55.26  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A           12 PYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.3e-11  Score=54.88  Aligned_cols=35  Identities=17%  Similarity=0.196  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.16  E-value=2.9e-11  Score=55.68  Aligned_cols=50  Identities=18%  Similarity=0.176  Sum_probs=46.2

Q ss_pred             CcccccccCHHH-HHhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCCCCc
Q psy3949           7 KHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPY   66 (103)
Q Consensus         7 ~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   66 (103)
                      ++.|.....|.. +..|.+.     +     +|.|..|++.|.....|..|++.|.+++||
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~-----k-----~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSE-----Q-----PATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSS-----C-----CEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccccCCCcchhhHHHhcCCC-----C-----CccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            577888888888 9999998     8     999999999999999999999999999886

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=55.02  Aligned_cols=35  Identities=29%  Similarity=0.372  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            89999999999999999999999999999999876

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=1.9e-11  Score=54.94  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             CCcceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcc
Q psy3949          34 HNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDY   73 (103)
Q Consensus        34 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~   73 (103)
                      ..++|.|..|++.|.....|..|++.|.+++||.|..|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            3448999999999999999999999999999999999975

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=54.91  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=33.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=55.05  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=33.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            89999999999999999999999999999999876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2.3e-11  Score=58.29  Aligned_cols=53  Identities=15%  Similarity=0.350  Sum_probs=46.5

Q ss_pred             CcccCCCcccccccCHHH-HHhhhCCCccccCCCCCcceecC-CCCCCccchhHHHHHHHHhhCCCC
Q psy3949           1 VRCQYCKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCY-TCPYHTTYSQSMKSHLRKHSGEKP   65 (103)
Q Consensus         1 ~~C~~C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~-~c~~~~~~~~~l~~h~~~~~~~~~   65 (103)
                      |.|..|++.|. ...|.. +.. .+.     +     +|.|+ .|++.|.....|..|++.|...++
T Consensus        11 ~~C~~C~k~f~-~~~L~~H~~~-~~~-----~-----p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           11 QPCTYCTKEFV-FDTIQSHQYQ-CPR-----L-----PVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             EECSSSCCEEE-HHHHHHHHHH-CSS-----S-----EEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             eeccccCCccC-HHHHHHHHHH-cCC-----c-----CccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            57999999999 888888 777 777     7     99999 999999999999999998866554

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=3e-11  Score=53.54  Aligned_cols=36  Identities=19%  Similarity=0.327  Sum_probs=34.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCD   72 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~   72 (103)
                      +|.|..|++.|.....|..|++.|.++++|.|..|+
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            999999999999999999999999999999999886

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.6e-11  Score=54.62  Aligned_cols=35  Identities=34%  Similarity=0.476  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|+..|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A           12 PFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.2e-11  Score=55.05  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=33.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            89999999999999999999999999999999876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.5e-11  Score=54.75  Aligned_cols=35  Identities=26%  Similarity=0.334  Sum_probs=33.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A           12 SHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.1e-11  Score=55.15  Aligned_cols=35  Identities=29%  Similarity=0.386  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A           12 PFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.8e-11  Score=54.51  Aligned_cols=35  Identities=31%  Similarity=0.495  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A           12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.2e-11  Score=55.06  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=33.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A           12 PYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            99999999999999999999999999999999876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.6e-11  Score=54.15  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=33.6

Q ss_pred             ceecCCCCCCccchhHHHHHHH-HhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLR-KHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++ .|.+++||.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            9999999999999999999999 9999999999876

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.11  E-value=1.3e-11  Score=62.54  Aligned_cols=56  Identities=18%  Similarity=0.207  Sum_probs=47.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhccc-------CccCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHL-------MESSNS   96 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~-------e~~~~C   96 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|..+    .....|..|+++|.+       |.|++|
T Consensus        25 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (88)
T 1x6f_A           25 TYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQ----ERRKQLLSKQKYADGAFADFKQESGPSS   87 (88)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCC----SCCCCCCCCCCCCCCSSSCCCCCCCCCC
T ss_pred             CCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchh----hhHHHHHhhhcccccccccccccCCCCC
Confidence            99999999999999999999999999999998754    456777888888887       556654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.5e-11  Score=53.17  Aligned_cols=35  Identities=34%  Similarity=0.459  Sum_probs=33.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A           12 PFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999754

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.11  E-value=3.8e-12  Score=60.45  Aligned_cols=46  Identities=11%  Similarity=0.164  Sum_probs=41.6

Q ss_pred             HHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        55 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .|++.|.+++||.|..|++.|.....|.   ++|++++||.|++||+.|
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f   49 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBC
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCcc
Confidence            4667889999999999999999888776   789999999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.1e-11  Score=53.68  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=33.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.6e-11  Score=52.14  Aligned_cols=35  Identities=23%  Similarity=0.491  Sum_probs=26.0

Q ss_pred             HhhCCCCccCCcCcccccCcchhhhhhhhcccCcc
Q psy3949          59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMES   93 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~   93 (103)
                      .|.+++||.|..|++.|...+.|..|+++|++++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            45667777777777777777777777777777764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.06  E-value=7.6e-11  Score=48.86  Aligned_cols=31  Identities=19%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccCccCC
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLMESSN   95 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~   95 (103)
                      ||.|..|++.|...+.|..|+++|++++||.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5666666666666666666666666666664

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.05  E-value=5.1e-12  Score=64.06  Aligned_cols=45  Identities=16%  Similarity=0.259  Sum_probs=41.4

Q ss_pred             HHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccc
Q psy3949          57 LRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITF  101 (103)
Q Consensus        57 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~  101 (103)
                      ...|.+++||.|..|++.|.....|..|+++|++++||+|..|..
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~   61 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER   61 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh
Confidence            456889999999999999999999999999999999999998764

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.8e-10  Score=50.48  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|.+
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A           10 AFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            8999999999999999999999999999999863

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.05  E-value=1e-10  Score=52.02  Aligned_cols=34  Identities=32%  Similarity=0.497  Sum_probs=32.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|.+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A           12 PFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.05  E-value=6.2e-11  Score=49.52  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=24.0

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccCcc
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMES   93 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~   93 (103)
                      |.++++|.|..|++.|...+.|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            4566777777777777777777777777777654

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.04  E-value=9.7e-11  Score=51.01  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=31.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A           10 PYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            999999999999999999999999999999874

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.2e-10  Score=51.78  Aligned_cols=34  Identities=38%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A           12 LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.3e-10  Score=51.62  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A           12 PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.1e-10  Score=51.80  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=32.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A           12 PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.04  E-value=8.2e-11  Score=49.20  Aligned_cols=34  Identities=29%  Similarity=0.518  Sum_probs=23.9

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccCcc
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMES   93 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~   93 (103)
                      |.+++||.|..|++.|...+.|..|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            4566777777777777777777777777776654

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.2e-10  Score=51.78  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A           12 PYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=51.63  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=32.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A           12 PYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.4e-10  Score=51.60  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=31.9

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A           12 GHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            899999999999999999999999999999986

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=5.5e-11  Score=58.51  Aligned_cols=54  Identities=20%  Similarity=0.293  Sum_probs=48.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCcc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMES   93 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~   93 (103)
                      ++.|..|+..|. ...|..|+ .+.+++|+.|..|++.+. ...|..|++++.+++.
T Consensus        17 ~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~~   70 (75)
T 2d9k_A           17 LAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREGS   70 (75)
T ss_dssp             CEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBSS
T ss_pred             ccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCcC
Confidence            899999999995 88999999 899999999999999877 5899999999988754

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=9.1e-11  Score=52.18  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A           12 PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             ccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.4e-10  Score=50.41  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A           10 PYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            899999999999999999999999999999873

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.02  E-value=5.7e-11  Score=50.32  Aligned_cols=36  Identities=33%  Similarity=0.539  Sum_probs=29.0

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      |++.|.+++||.|..|++.|.....|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            455677888888888888888888888888888764

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.5e-10  Score=51.46  Aligned_cols=34  Identities=35%  Similarity=0.508  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A           12 PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.1e-10  Score=51.93  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A           12 HYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.4e-10  Score=51.50  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A           12 HYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            9999999999999999999999999999998863

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=3.5e-12  Score=62.01  Aligned_cols=46  Identities=17%  Similarity=0.228  Sum_probs=40.7

Q ss_pred             hHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          51 QSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        51 ~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      ..|..|++.|.++++|.|..|++.|.....|..       +++|.|++|+++|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f   49 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDS   49 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhh
Confidence            445678888999999999999999999988876       7999999999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.2e-10  Score=51.72  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A           12 PYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            8999999999999999999999999999999863

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=50.59  Aligned_cols=32  Identities=22%  Similarity=0.458  Sum_probs=30.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC   68 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c   68 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A           11 PYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             SEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999999999999999999876

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.1e-10  Score=51.84  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A           12 PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=51.59  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=32.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A           12 PYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            9999999999999999999999999999999863

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.01  E-value=1.7e-10  Score=50.18  Aligned_cols=32  Identities=25%  Similarity=0.357  Sum_probs=30.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC   68 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c   68 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A           11 PYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            99999999999999999999999999999876

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.6e-10  Score=51.34  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=31.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A           12 PYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999999999886

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.5e-10  Score=51.34  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A           12 PYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             SSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            8999999999999999999999999999999863

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.3e-10  Score=51.66  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            8999999999999999999999999999999863

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.9e-10  Score=51.05  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=31.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A           12 PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999999999886

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=1.3e-10  Score=49.47  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=23.4

Q ss_pred             hCCCCccCC--cCcccccCcchhhhhhhhcccCccC
Q psy3949          61 SGEKPYKCL--FCDYHCTQSGPLRRHMKIKHLMESS   94 (103)
Q Consensus        61 ~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~e~~~   94 (103)
                      .+++||.|.  .|++.|...+.|..|+++|++++||
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            456667776  4777777777777777777777665

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=2.2e-10  Score=50.38  Aligned_cols=33  Identities=21%  Similarity=0.176  Sum_probs=31.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A           12 TSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            899999999999999999999999999999874

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.4e-10  Score=51.49  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A           12 PFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.5e-10  Score=51.41  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A           12 PFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999999999986

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.9e-10  Score=50.49  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=31.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|+..|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A           12 PYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999999999874

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.4e-10  Score=51.50  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=31.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A           12 PYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             SCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999999999886

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=51.67  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A           12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            8999999999999999999999999999998863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.5e-10  Score=51.40  Aligned_cols=34  Identities=29%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A           12 CYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            8999999999999999999999999999999863

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.3e-10  Score=49.54  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=30.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC   68 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c   68 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A           10 VYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            99999999999999999999999999999876

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2e-10  Score=50.50  Aligned_cols=33  Identities=15%  Similarity=0.344  Sum_probs=31.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A           12 RYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            999999999999999999999999999999874

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.7e-10  Score=51.17  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=31.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A           12 PYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999999999986

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=51.29  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF   70 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   70 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A           12 PYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999999999999999863

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.1e-10  Score=50.42  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|+..|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A           12 PFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             SEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            999999999999999999999999999999874

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.9e-10  Score=51.09  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=31.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A           12 PYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999999999886

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.5e-10  Score=50.84  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A           12 PYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            899999999999999999999999999999874

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.5e-10  Score=50.45  Aligned_cols=32  Identities=34%  Similarity=0.568  Sum_probs=30.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC   68 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c   68 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A           11 PYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999999999999999876

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.97  E-value=9.8e-11  Score=48.15  Aligned_cols=32  Identities=19%  Similarity=0.426  Sum_probs=28.8

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCccCC
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN   95 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~   95 (103)
                      +||.|..|++.|...+.|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   32 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVALG   32 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCCC
Confidence            47899999999999999999999999999873

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.4e-10  Score=50.59  Aligned_cols=35  Identities=31%  Similarity=0.497  Sum_probs=33.3

Q ss_pred             ceecC--CCCCCccchhHHHHHHHHhhCCCCccCCcC
Q psy3949          37 RFVCY--TCPYHTTYSQSMKSHLRKHSGEKPYKCLFC   71 (103)
Q Consensus        37 ~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   71 (103)
                      +|.|.  .|++.|.....|..|++.|.+++||.|..|
T Consensus        12 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A           12 PFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            99998  899999999999999999999999999876

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.3e-10  Score=50.51  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=30.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC   68 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c   68 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           11 PYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             SBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999999999876

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.95  E-value=2.9e-10  Score=55.12  Aligned_cols=50  Identities=24%  Similarity=0.434  Sum_probs=44.7

Q ss_pred             CcccC--CCcccccccCHHH-HHhhhCCCccccCCCCCcceecCC--CCCCccchhHHHHHHHHh
Q psy3949           1 VRCQY--CKHSLSVSNGFEI-VLSHTKSCTYISRPDHNYRFVCYT--CPYHTTYSQSMKSHLRKH   60 (103)
Q Consensus         1 ~~C~~--C~~~f~~~~~l~~-~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~   60 (103)
                      |.|..  |++.|.....|.. +..|.+.     +     +|.|..  |++.|.....|..|++.|
T Consensus        18 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~-----~-----~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           18 HICSHPGCGKTYFKSSHLKAHTRTHTGE-----K-----PFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             EECSSTTTCCEESSHHHHHHHHHHHSSS-----C-----SEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             eeCCCCCCccccCCHHHHHHHHHhcCCC-----C-----CccCCCCCCCcccCCHHHHHhHhhcC
Confidence            46877  9999999999999 9999998     8     999965  999999999999998654

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=2.2e-10  Score=50.89  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhC-CCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSG-EKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~-~~~~~c~   69 (103)
                      +|.|..|++.|.....|..|++.|.+ ++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A           12 CFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999999999999 9999886

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.5e-10  Score=50.89  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=31.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|+..|.++++|.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A           12 PYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999999999874

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.7e-10  Score=50.52  Aligned_cols=33  Identities=30%  Similarity=0.502  Sum_probs=31.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A           12 PFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999999999885

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.5e-10  Score=49.61  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=31.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|..|++.|.....|..|++.|.+++||.|.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A           12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             SEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999999999885

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2e-10  Score=50.53  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|+..|.+++||.|.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A           12 SYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999999999873

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1.2e-11  Score=60.87  Aligned_cols=50  Identities=12%  Similarity=0.057  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          52 SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        52 ~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      .|..|+..+.+.+|+.|..|+..|. ...|..|+ .+.+++|+.|+.|++.|
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~   53 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNV   53 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEE
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcC
Confidence            3556777788899999999999994 88999999 99999999999999864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=4e-10  Score=48.28  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=21.5

Q ss_pred             hhCCCCccCCc--CcccccCcchhhhhhhhcccC
Q psy3949          60 HSGEKPYKCLF--CDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        60 ~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      +.+++||.|..  |++.|...+.|.+|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            45566777764  777777777777777777664

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.5e-10  Score=50.62  Aligned_cols=33  Identities=24%  Similarity=0.443  Sum_probs=31.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      +|.|+.|++.|.....|..|+..|.+++||.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A           12 PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            899999999999999999999999999999886

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.5e-10  Score=49.09  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=30.6

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC   68 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c   68 (103)
                      +|.|+.|++.|.....|..|++.|.+++||.|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A           12 PYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            99999999999999999999999999999875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=4.9e-10  Score=46.99  Aligned_cols=32  Identities=31%  Similarity=0.541  Sum_probs=20.8

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      |.+++||.|..|++.|.....|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            45566666666666666666666666666655

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=3.9e-10  Score=47.66  Aligned_cols=34  Identities=24%  Similarity=0.534  Sum_probs=22.6

Q ss_pred             HhhCCCCccCCcCcccccCc-chhhhhhhhcccCc
Q psy3949          59 KHSGEKPYKCLFCDYHCTQS-GPLRRHMKIKHLME   92 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~-~~l~~h~~~~~~e~   92 (103)
                      +|.+++||.|..|++.|... +.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            35566677777777777776 67777777766653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=6.7e-10  Score=46.62  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=24.2

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      |.+++||.|..|++.|...+.|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            556677777777777777777777777777653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=6e-10  Score=46.79  Aligned_cols=33  Identities=30%  Similarity=0.650  Sum_probs=22.7

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      |.+++||.|..|++.|...+.|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            556667777777777777777777777776653

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=7.3e-10  Score=46.43  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      |.++++|.|..|++.|.....|..|+++|++|+
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            445566666666666666666666666666553

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.1e-09  Score=45.95  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=19.4

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      |.+++||.|..|++.|.....|..|+++|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            34455666666666666666666666666554

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.82  E-value=3.7e-09  Score=45.12  Aligned_cols=33  Identities=15%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCCCccC
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC   68 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c   68 (103)
                      ++|.|..|++.|.....|..|++.|.+++||.+
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            389999999999999999999999999999864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.82  E-value=1.1e-09  Score=49.07  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=17.2

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhh-hcccC
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMK-IKHLM   91 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~~e   91 (103)
                      |.+++||.|..|++.|.....|..|++ +|+++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            445555555555555555555555555 55554

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.82  E-value=7.4e-10  Score=46.84  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=18.1

Q ss_pred             hCCCCccCCcCcccccCcchhhhhh
Q psy3949          61 SGEKPYKCLFCDYHCTQSGPLRRHM   85 (103)
Q Consensus        61 ~~~~~~~c~~c~~~f~~~~~l~~h~   85 (103)
                      .+++||.|..|++.|.+.++|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4567777777777777777777776

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=5.4e-10  Score=47.32  Aligned_cols=33  Identities=24%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             HhhCCCCccCCcCcccccCcchhhhh-hhhcccC
Q psy3949          59 KHSGEKPYKCLFCDYHCTQSGPLRRH-MKIKHLM   91 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~~~l~~h-~~~~~~e   91 (103)
                      .|.+++||.|..|++.|...+.|..| +++|+++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            35556666666666666666666666 6666553

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.78  E-value=3.3e-10  Score=50.63  Aligned_cols=38  Identities=18%  Similarity=0.327  Sum_probs=31.3

Q ss_pred             HHHHHhhCCCCccCC--cCcccccCcchhhhhhhhcccCc
Q psy3949          55 SHLRKHSGEKPYKCL--FCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        55 ~h~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      .+...|.+++||.|.  .|++.|...+.|..|+++|++++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            344568888999995  69999999999999999998874

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.76  E-value=9.7e-09  Score=42.24  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=28.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCcc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYK   67 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   67 (103)
                      ||.|+.|++.|.....|..|+.+|.+++++.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            7899999999999999999999999998874

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=9.2e-09  Score=49.45  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=33.1

Q ss_pred             CCCcceecCC--CCCCccchhHHHHHH-HHhhCCCCccCCc
Q psy3949          33 DHNYRFVCYT--CPYHTTYSQSMKSHL-RKHSGEKPYKCLF   70 (103)
Q Consensus        33 ~~~~~~~c~~--c~~~~~~~~~l~~h~-~~~~~~~~~~c~~   70 (103)
                      ++.+||.|..  |++.|.....|..|+ ++|++++|+.|..
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            4455999975  999999999999998 6899999998865

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.75  E-value=2.6e-09  Score=45.13  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=17.8

Q ss_pred             hhCCCCccCC--cCcccccCcchhhhhhhhcccC
Q psy3949          60 HSGEKPYKCL--FCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        60 ~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      |.+++||.|.  .|++.|...+.|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            3445555555  2555555555566665555554

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=3.3e-09  Score=44.65  Aligned_cols=29  Identities=21%  Similarity=0.446  Sum_probs=27.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKP   65 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   65 (103)
                      +|.|..|++.|.....|..|+..|.+++|
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            9 SYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999998765

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.71  E-value=7.7e-09  Score=40.96  Aligned_cols=27  Identities=19%  Similarity=0.340  Sum_probs=17.1

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccC
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      ||.|..|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            556666666666666666666666654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.71  E-value=5.9e-09  Score=41.53  Aligned_cols=28  Identities=25%  Similarity=0.603  Sum_probs=16.0

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4555555555555555555555555554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.69  E-value=1.4e-08  Score=41.21  Aligned_cols=28  Identities=32%  Similarity=0.515  Sum_probs=18.5

Q ss_pred             CCccCC--cCcccccCcchhhhhhhhcccC
Q psy3949          64 KPYKCL--FCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        64 ~~~~c~--~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      +||.|.  .|++.|...+.|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            456666  5666666666666666666665

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.69  E-value=1.5e-08  Score=41.96  Aligned_cols=29  Identities=28%  Similarity=0.456  Sum_probs=27.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKP   65 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   65 (103)
                      +|.|..|++.|.....|..|++.|.+++|
T Consensus         7 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            7 PFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999988764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.68  E-value=1.6e-08  Score=41.84  Aligned_cols=29  Identities=28%  Similarity=0.523  Sum_probs=27.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKP   65 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   65 (103)
                      +|.|..|++.|.....|..|++.|.+++|
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            7 GYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            89999999999999999999999988764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.67  E-value=1.2e-08  Score=40.57  Aligned_cols=28  Identities=36%  Similarity=0.886  Sum_probs=16.5

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      +|.|..|++.|...+.|..|+++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            4556666666666666666666655544

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.66  E-value=1.1e-08  Score=40.32  Aligned_cols=27  Identities=37%  Similarity=0.589  Sum_probs=14.8

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccC
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      ||.|..|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            455555555555555555555555544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.65  E-value=1.2e-08  Score=40.31  Aligned_cols=27  Identities=19%  Similarity=0.427  Sum_probs=13.9

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccC
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      ||.|..|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            445555555555555555555555443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.64  E-value=1.4e-08  Score=40.92  Aligned_cols=28  Identities=29%  Similarity=0.640  Sum_probs=18.3

Q ss_pred             CccCC--cCcccccCcchhhhhhhhcccCc
Q psy3949          65 PYKCL--FCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        65 ~~~c~--~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      ||.|.  .|++.|...+.|..|+++|++++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            56665  66667766666777766666653

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.63  E-value=9.6e-09  Score=40.59  Aligned_cols=26  Identities=42%  Similarity=0.663  Sum_probs=12.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      +|.|..|++.|.....|..|++.|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            34455555555555555555544444

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.62  E-value=1.3e-08  Score=48.73  Aligned_cols=29  Identities=17%  Similarity=0.206  Sum_probs=23.3

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      ++|.|..|++.|.....|..|+++|.++.
T Consensus        12 kpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A           12 GILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             cCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            37888888888888888888888887753

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=3.9e-09  Score=41.94  Aligned_cols=28  Identities=25%  Similarity=0.513  Sum_probs=19.4

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      ||.|..|++.|...+.|..|+++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            5667777777777777777777776653

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.04  E-value=4.4e-09  Score=42.02  Aligned_cols=28  Identities=36%  Similarity=0.825  Sum_probs=19.4

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      +||.|..|++.|...+.|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4666777777777777777777776665

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.58  E-value=3.2e-08  Score=39.39  Aligned_cols=29  Identities=34%  Similarity=0.477  Sum_probs=20.5

Q ss_pred             CCccCCcCcccccCcchhhhh-hhhcccCc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRH-MKIKHLME   92 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h-~~~~~~e~   92 (103)
                      +||.|..|++.|...+.|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            356777777777777777777 56777653

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.57  E-value=6.8e-08  Score=40.70  Aligned_cols=30  Identities=23%  Similarity=0.435  Sum_probs=28.3

Q ss_pred             ceecC--CCCCCccchhHHHHHHHHhhCCCCc
Q psy3949          37 RFVCY--TCPYHTTYSQSMKSHLRKHSGEKPY   66 (103)
Q Consensus        37 ~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~   66 (103)
                      +|.|.  .|++.|.....|..|++.|.++++|
T Consensus         6 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            6 PFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             ceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            89999  5999999999999999999999886

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.55  E-value=3.4e-08  Score=38.35  Aligned_cols=27  Identities=26%  Similarity=0.621  Sum_probs=17.0

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccC
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      ||.|..|++.|...+.|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            356666777777777777777666653

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.54  E-value=3.5e-08  Score=38.68  Aligned_cols=26  Identities=19%  Similarity=0.645  Sum_probs=14.6

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      +||.|..|++.|...+.|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            45555555555555555555555554

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=9.8e-08  Score=39.62  Aligned_cols=28  Identities=39%  Similarity=0.873  Sum_probs=26.0

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      +|.|..|++.|.....|..|++.|.+++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            9 PYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            9999999999999999999999998763

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=8e-08  Score=40.22  Aligned_cols=28  Identities=21%  Similarity=0.491  Sum_probs=26.0

Q ss_pred             ceecCCCCCCccch-hHHHHHHHHhhCCC
Q psy3949          37 RFVCYTCPYHTTYS-QSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~~c~~~~~~~-~~l~~h~~~~~~~~   64 (103)
                      +|.|+.|++.|... ..|..|++.|.+++
T Consensus         9 ~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            9 AMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            99999999999999 99999999998763

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.50  E-value=4.9e-08  Score=37.96  Aligned_cols=25  Identities=20%  Similarity=0.701  Sum_probs=12.0

Q ss_pred             CCccCCcCcccccCcchhhhhhhhc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      +||.|..|++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            3444444555554444444444443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=1.2e-07  Score=39.39  Aligned_cols=29  Identities=21%  Similarity=0.345  Sum_probs=26.4

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      ++|.|+.|++.|.....|..|++.|.+++
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            38999999999999999999999998763

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=1.1e-07  Score=39.54  Aligned_cols=29  Identities=38%  Similarity=0.724  Sum_probs=26.2

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      ++|.|..|++.|.....|..|++.|.+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            39999999999999999999999987753

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=1.7e-07  Score=38.91  Aligned_cols=29  Identities=34%  Similarity=0.634  Sum_probs=26.4

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      ++|.|+.|++.|.....|..|++.|.+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            38999999999999999999999998753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.47  E-value=8.5e-08  Score=40.10  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=25.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      +|.|+.|++.|.....|..|++.|.++
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A           11 PFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CccCCCCCcccCcHHHHHHHHHHhccC
Confidence            999999999999999999999988763

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.47  E-value=4.2e-08  Score=38.26  Aligned_cols=25  Identities=28%  Similarity=0.798  Sum_probs=13.9

Q ss_pred             CCccCCcCcccccCcchhhhhhhhc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      +||.|..|++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4555555555555555555555544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1e-07  Score=39.60  Aligned_cols=29  Identities=14%  Similarity=0.252  Sum_probs=26.1

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      ++|.|..|++.|.....|..|++.|.+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            39999999999999999999999987753

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=7.8e-08  Score=40.39  Aligned_cols=27  Identities=30%  Similarity=0.673  Sum_probs=24.9

Q ss_pred             ceecCCCCCCccchhHHHHH-HHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSH-LRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h-~~~~~~~   63 (103)
                      ||.|+.|++.|.....|..| +..|.++
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            9 LYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             EEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            99999999999999999999 8888764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=2e-07  Score=39.69  Aligned_cols=30  Identities=27%  Similarity=0.521  Sum_probs=26.6

Q ss_pred             CCcceecCC--CCCCccchhHHHHHHHHhhCC
Q psy3949          34 HNYRFVCYT--CPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        34 ~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      +.+||.|+.  |++.|.....|..|+++|+++
T Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            6 SGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            344999986  999999999999999999875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.42  E-value=1.9e-07  Score=36.68  Aligned_cols=28  Identities=29%  Similarity=0.599  Sum_probs=24.9

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      +|.|+.|++.|.....|..|++.|.+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            7899999999999999999999888753

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.42  E-value=6e-09  Score=42.55  Aligned_cols=30  Identities=20%  Similarity=0.400  Sum_probs=26.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPY   66 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   66 (103)
                      ||.|..|++.|.....|..|++.|.+++|+
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            688999999999999999999888888775

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.40  E-value=3e-07  Score=35.98  Aligned_cols=29  Identities=38%  Similarity=0.661  Sum_probs=26.1

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47899999999999999999999998874

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.40  E-value=3.2e-07  Score=35.95  Aligned_cols=27  Identities=33%  Similarity=0.672  Sum_probs=24.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      +|.|+.|++.|.....|..|++.|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            688999999999999999999998775

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=3.3e-07  Score=35.80  Aligned_cols=28  Identities=21%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      +|.|..|++.|.....|..|++.|.+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            7889999999999999999999888753

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.38  E-value=2.8e-07  Score=36.34  Aligned_cols=28  Identities=25%  Similarity=0.421  Sum_probs=25.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      +|.|..|++.|.....|..|++.|.+++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            8999999999999999999999887753

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.37  E-value=4e-07  Score=35.87  Aligned_cols=29  Identities=17%  Similarity=0.602  Sum_probs=25.0

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKP   65 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   65 (103)
                      +|.|..|++.|.....|..|+..|.++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            68899999999999999999998887653

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.36  E-value=2.1e-07  Score=41.49  Aligned_cols=29  Identities=17%  Similarity=0.378  Sum_probs=25.1

Q ss_pred             ceecCCCCCCccchhHHHHHHH-HhhCCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLR-KHSGEKP   65 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~   65 (103)
                      +|.|..|++.|.....|..|++ .|.++.+
T Consensus         7 p~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            7 PYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            9999999999999999999999 8988654

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.68  E-value=6.2e-08  Score=37.31  Aligned_cols=24  Identities=33%  Similarity=0.652  Sum_probs=13.8

Q ss_pred             CccCCcCcccccCcchhhhhhhhc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      ||.|..|++.|...+.|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            455555666666555665555554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.31  E-value=7.2e-07  Score=37.28  Aligned_cols=30  Identities=27%  Similarity=0.582  Sum_probs=26.5

Q ss_pred             CcceecCC--CCCCccchhHHHHHHHHhhCCC
Q psy3949          35 NYRFVCYT--CPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        35 ~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      .++|.|..  |++.|.....|..|++.|.+++
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            34999994  9999999999999999998864

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.29  E-value=7.7e-07  Score=35.76  Aligned_cols=28  Identities=14%  Similarity=0.367  Sum_probs=25.2

Q ss_pred             ceecC--CCCCCccchhHHHHHHHHhhCCC
Q psy3949          37 RFVCY--TCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      +|.|.  .|++.|.....|..|++.|.+++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            78999  89999999999999999998753

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.29  E-value=4.8e-07  Score=36.17  Aligned_cols=28  Identities=39%  Similarity=0.706  Sum_probs=24.5

Q ss_pred             ceecC--CCCCCccchhHHHHHHHHhhCCC
Q psy3949          37 RFVCY--TCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      ||.|+  .|++.|.....|..|++.|.+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            78897  89999999999999999888753

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.54  E-value=1.5e-07  Score=37.11  Aligned_cols=27  Identities=33%  Similarity=0.608  Sum_probs=23.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      +|.|..|++.|.....|..|++.|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            688999999999999999998888765

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.22  E-value=4.2e-07  Score=35.58  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=12.7

Q ss_pred             CccCC--cCcccccCcchhhhhhhhcc
Q psy3949          65 PYKCL--FCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        65 ~~~c~--~c~~~f~~~~~l~~h~~~~~   89 (103)
                      +|.|.  .|++.|...+.|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            34444  55555555555555555443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.22  E-value=7.3e-07  Score=34.30  Aligned_cols=26  Identities=19%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      +|.|..|++.|.....|..|++.|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46788888888888888888887765

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.21  E-value=5.2e-07  Score=37.91  Aligned_cols=23  Identities=22%  Similarity=0.569  Sum_probs=21.2

Q ss_pred             CcceecCCCCCCccchhHHHHHH
Q psy3949          35 NYRFVCYTCPYHTTYSQSMKSHL   57 (103)
Q Consensus        35 ~~~~~c~~c~~~~~~~~~l~~h~   57 (103)
                      .+||.|..|++.|...+.|..|+
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH
T ss_pred             ccCeECCCCCCccCCHhHccCcC
Confidence            34999999999999999999998

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.19  E-value=1e-06  Score=33.99  Aligned_cols=24  Identities=38%  Similarity=0.746  Sum_probs=22.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHh
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKH   60 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~   60 (103)
                      +|.|..|++.|.....|..|++.|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CccCCCcChhhCCHHHHHHHHHHc
Confidence            899999999999999999998876

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.18  E-value=8.8e-07  Score=34.40  Aligned_cols=26  Identities=27%  Similarity=0.668  Sum_probs=23.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      +|.|+.|++.|.....|..|++.|.+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHhcCC
Confidence            89999999999999999999887753

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.45  E-value=2.6e-07  Score=36.51  Aligned_cols=27  Identities=30%  Similarity=0.705  Sum_probs=24.0

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      +|.|..|++.|.....|..|++.|.++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            789999999999999999999888765

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.15  E-value=8.9e-07  Score=34.91  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=23.6

Q ss_pred             ceecCCCCCCccchhHHHHH-HHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSH-LRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h-~~~~~~~   63 (103)
                      +|.|+.|++.|.....|..| +..|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            68999999999999999999 6778765

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.15  E-value=2.2e-06  Score=40.89  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=30.2

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      +.+++||.|..|++.|...+.|..|+++|+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            567899999999999999999999999999865

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.13  E-value=5.8e-07  Score=39.73  Aligned_cols=36  Identities=17%  Similarity=0.455  Sum_probs=30.3

Q ss_pred             HHhhhCCCccccCCCCCcceecC--CCCCCccchhHHHHHHHHhhCCC
Q psy3949          19 VLSHTKSCTYISRPDHNYRFVCY--TCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        19 ~~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      +..|.++     +     +|.|.  .|++.|.....|..|++.|.+++
T Consensus        10 ~~~H~~~-----k-----~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           10 YVKEMPD-----K-----TFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SCEEETT-----T-----EEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HhccCCC-----C-----CeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3446666     7     99996  79999999999999999998864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.08  E-value=1e-06  Score=34.06  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=22.0

Q ss_pred             ceecCCCCCCccchhHHHHHHHHh
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKH   60 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~   60 (103)
                      +|.|..|++.|.....|..|++.|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHhc
Confidence            899999999999999999998765

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.31  E-value=5.9e-07  Score=34.36  Aligned_cols=24  Identities=29%  Similarity=0.649  Sum_probs=20.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHh
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKH   60 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~   60 (103)
                      +|.|+.|++.|.....|..|++.|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            688899999998888888888765

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.95  E-value=4.9e-06  Score=32.29  Aligned_cols=26  Identities=23%  Similarity=0.553  Sum_probs=22.8

Q ss_pred             ceecC--CCCCCccchhHHHHHHHHhhC
Q psy3949          37 RFVCY--TCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        37 ~~~c~--~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      +|.|.  .|++.|.....|..|++.|.+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            68899  999999999999999988753

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.64  E-value=8.9e-05  Score=34.98  Aligned_cols=47  Identities=21%  Similarity=0.508  Sum_probs=32.1

Q ss_pred             CCCCCCccchhHHHHHHH-HhhCCC------CccCC--cCcccccCcchhhhhhhh
Q psy3949          41 YTCPYHTTYSQSMKSHLR-KHSGEK------PYKCL--FCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        41 ~~c~~~~~~~~~l~~h~~-~~~~~~------~~~c~--~c~~~f~~~~~l~~h~~~   87 (103)
                      ..|++.|.+...|..|+. .|.+.+      +|.|.  .|+..+.....|.+|++.
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            447777777777777764 566554      56774  677777766777777765

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.0012  Score=30.98  Aligned_cols=54  Identities=19%  Similarity=0.433  Sum_probs=40.9

Q ss_pred             cccC--CCcccccccCHHH-H-HhhhCCCccccCCCC-CcceecC--CCCCCccchhHHHHHHHHh
Q psy3949           2 RCQY--CKHSLSVSNGFEI-V-LSHTKSCTYISRPDH-NYRFVCY--TCPYHTTYSQSMKSHLRKH   60 (103)
Q Consensus         2 ~C~~--C~~~f~~~~~l~~-~-~~h~~~~~~~~~~~~-~~~~~c~--~c~~~~~~~~~l~~h~~~~   60 (103)
                      .|..  |++.|.+...|.. + ..|.+.     +++. ..+|.|.  .|+..+.....|..|++..
T Consensus         3 ~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~-----~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            3 KCKWKECPESASSLFDLQRHLLKDHVSQ-----DFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCTTCCCCCSSHHHHHHHHHHHSCCC-----CCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eEeeCCCCCcCCCHHHHHHHHHhhccCc-----ccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            4554  9999999999998 6 478776     4322 2368887  7999888889999998753

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.10  E-value=7.7e-05  Score=39.73  Aligned_cols=29  Identities=24%  Similarity=0.426  Sum_probs=23.3

Q ss_pred             HhhCCCCccCCcCcccccCcchhhhhhhh
Q psy3949          59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      .++|+++|.|..|++.|.+.+.|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            46677888888888888888888888775

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.87  E-value=0.0018  Score=34.46  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=23.3

Q ss_pred             CCCcceecCCCCCCccchhHHHHHHHH
Q psy3949          33 DHNYRFVCYTCPYHTTYSQSMKSHLRK   59 (103)
Q Consensus        33 ~~~~~~~c~~c~~~~~~~~~l~~h~~~   59 (103)
                      ++.++|.|..|++.|.....|..|+++
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhh
Confidence            344599999999999999999999863

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.83  E-value=0.02  Score=31.85  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=26.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCcc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMES   93 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~   93 (103)
                      +..|+.|+..+ ....|..|....=..+...|..|+..+.. ..+..|+.++.|+.+
T Consensus       110 ~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          110 LMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALE  164 (170)
T ss_dssp             EEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC---
T ss_pred             eeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhh
Confidence            34555565544 33445555544334445556666554433 345566666655544

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=95.58  E-value=0.015  Score=28.34  Aligned_cols=56  Identities=14%  Similarity=0.256  Sum_probs=39.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS   94 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~   94 (103)
                      .|.|+.||..+. +..+..|...-.+...+.|..|+..|.. ..+..|..--+++..|
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~HtsCISEaeKY   65 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHVKCISEGQKY   65 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCCCCCSCTTSS
T ss_pred             EEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC-CCEeCEeeeCChhhee
Confidence            589999998765 4557788665555457999999999985 4566776544444333

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.54  E-value=0.015  Score=31.01  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=18.5

Q ss_pred             ceecCCCCCCccchhHHHHHH
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHL   57 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~   57 (103)
                      ++.|..|+..|.+...+..|.
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHH
Confidence            788999999999888888887

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.42  E-value=0.036  Score=24.24  Aligned_cols=24  Identities=17%  Similarity=0.448  Sum_probs=19.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHh
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKH   60 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~   60 (103)
                      ++.|+.|+..|.....|..|+...
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhhhc
Confidence            678888888888888888888743

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.14  E-value=0.012  Score=25.77  Aligned_cols=28  Identities=21%  Similarity=0.205  Sum_probs=24.0

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      .++.|+.|+..|.....|..|++..-++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcc
Confidence            5789999999999999999999865444

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.72  E-value=0.028  Score=31.28  Aligned_cols=64  Identities=13%  Similarity=0.148  Sum_probs=40.5

Q ss_pred             ceec--CCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          37 RFVC--YTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        37 ~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      ...|  ..|+.... ...+..|... =.-.+..|..|+..+ ....+..|....-..++-.|+.|+..|
T Consensus        82 ~v~C~n~GC~~~~~-~~~l~~H~~~-C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~  147 (170)
T 3hcs_A           82 MVKCPNEGCLHKME-LRHLEDHQAH-CEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASM  147 (170)
T ss_dssp             EEECCSTTCCCEEE-GGGHHHHHTT-CTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEE
T ss_pred             ccCCCCCCCCceec-HhHHHHHHhc-CCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCcc
Confidence            3456  34665443 4555666421 112456788888776 556788888776677777899998653

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=93.51  E-value=0.049  Score=28.06  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=19.1

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCccCCCCCccc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITF  101 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~  101 (103)
                      .|+.|..||..|.  .         ...+|-+|+.|+-
T Consensus        66 ~p~~C~~CG~~F~--~---------~~~kPsrCP~CkS   92 (105)
T 2gmg_A           66 KPAQCRKCGFVFK--A---------EINIPSRCPKCKS   92 (105)
T ss_dssp             CCCBBTTTCCBCC--C---------CSSCCSSCSSSCC
T ss_pred             ECcChhhCcCeec--c---------cCCCCCCCcCCCC
Confidence            5788999998881  1         1336788888874

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=93.42  E-value=0.049  Score=23.77  Aligned_cols=12  Identities=33%  Similarity=1.040  Sum_probs=7.4

Q ss_pred             ceecCCCCCCcc
Q psy3949          37 RFVCYTCPYHTT   48 (103)
Q Consensus        37 ~~~c~~c~~~~~   48 (103)
                      .|.|..||..+.
T Consensus         4 ~y~C~vCGyvyd   15 (46)
T 6rxn_A            4 KYVCNVCGYEYD   15 (46)
T ss_dssp             CEEETTTCCEEC
T ss_pred             EEECCCCCeEEe
Confidence            466777766554

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=92.78  E-value=0.05  Score=31.40  Aligned_cols=24  Identities=13%  Similarity=0.021  Sum_probs=15.1

Q ss_pred             CccCCcCcccccCcchhhhhhhhcccCccCCCCCccc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITF  101 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~  101 (103)
                      .|.|..||..+.             |+.|+.||+||-
T Consensus       171 ~~~C~~CG~i~~-------------g~~p~~CP~C~~  194 (202)
T 1yuz_A          171 FHLCPICGYIHK-------------GEDFEKCPICFR  194 (202)
T ss_dssp             EEECSSSCCEEE-------------SSCCSBCTTTCC
T ss_pred             EEEECCCCCEEc-------------CcCCCCCCCCCC
Confidence            467777776532             245677777763

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=92.40  E-value=0.13  Score=22.36  Aligned_cols=13  Identities=31%  Similarity=0.539  Sum_probs=5.7

Q ss_pred             ccCCcCcccccCc
Q psy3949          66 YKCLFCDYHCTQS   78 (103)
Q Consensus        66 ~~c~~c~~~f~~~   78 (103)
                      |.|..||+.|+..
T Consensus         4 Y~C~rCg~~fs~~   16 (48)
T 4ayb_P            4 YRCGKCWKTFTDE   16 (48)
T ss_dssp             -CCCCTTTTCCCC
T ss_pred             EEeeccCCCccHH
Confidence            4455555544433

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=91.85  E-value=0.074  Score=26.47  Aligned_cols=29  Identities=28%  Similarity=0.503  Sum_probs=18.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC   68 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c   68 (103)
                      ...|-+||+.|..   |..|+..+.|..|...
T Consensus        21 ~iiClecGK~fK~---LkRHL~~~hgltpeeY   49 (87)
T 2jsp_A           21 HIVCLECGGSFKS---LKRHLTTHHSMTPEEY   49 (87)
T ss_dssp             CEECTBTCCEESB---HHHHHHHTTCSCHHHH
T ss_pred             ceEecccchhhHH---HHHHHHHccCCCHHHH
Confidence            3567777776653   5577776666666543

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=91.08  E-value=0.21  Score=23.96  Aligned_cols=11  Identities=0%  Similarity=-0.318  Sum_probs=5.1

Q ss_pred             cCCCCCccccC
Q psy3949          93 SSNSHDITFVM  103 (103)
Q Consensus        93 ~~~C~~C~~~~  103 (103)
                      .|.|..|+++|
T Consensus        44 IW~C~~C~~~~   54 (72)
T 3jyw_9           44 IWTCSCCKKTV   54 (72)
T ss_dssp             CBCCSSSCCCC
T ss_pred             eEECCCCCCEE
Confidence            34455554443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=89.01  E-value=0.3  Score=19.81  Aligned_cols=23  Identities=17%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHH
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRK   59 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~   59 (103)
                      .|.|+.|.+.+.+...|..|-..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHh
Confidence            58899999999988888888754

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=88.86  E-value=0.042  Score=26.88  Aligned_cols=13  Identities=0%  Similarity=-0.488  Sum_probs=9.2

Q ss_pred             CccCCCCCccccC
Q psy3949          91 MESSNSHDITFVM  103 (103)
Q Consensus        91 e~~~~C~~C~~~~  103 (103)
                      +-.|+||.||..|
T Consensus        49 ~F~FkCP~CgEEF   61 (95)
T 2k5c_A           49 EFVFKCPVCGEEF   61 (95)
T ss_dssp             HSEEECTTTCCEE
T ss_pred             HHhhcCCCccHHH
Confidence            3468888888654

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=88.13  E-value=0.07  Score=26.35  Aligned_cols=30  Identities=27%  Similarity=0.702  Sum_probs=15.8

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCccccc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCT   76 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~   76 (103)
                      .|.|+.||.....          ..+...+.|..|+..|.
T Consensus        27 ~y~Cp~CG~~~v~----------r~atGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           27 DHACPNCGEDRVD----------RQGTGIWQCSYCDYKFT   56 (83)
T ss_dssp             CEECSSSCCEEEE----------EEETTEEEETTTCCEEE
T ss_pred             cCcCCCCCCccee----------ccCCCeEECCCCCCEec
Confidence            4677777653221          11123566777776554

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=87.35  E-value=0.31  Score=27.33  Aligned_cols=9  Identities=44%  Similarity=1.294  Sum_probs=4.3

Q ss_pred             ccCCcCccc
Q psy3949          66 YKCLFCDYH   74 (103)
Q Consensus        66 ~~c~~c~~~   74 (103)
                      |.|..||..
T Consensus       139 ~~C~~CG~i  147 (170)
T 3pwf_A          139 YICPICGYT  147 (170)
T ss_dssp             EECTTTCCE
T ss_pred             eEeCCCCCe
Confidence            445555543

>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...

Probab=86.43  E-value=0.57  Score=21.09  Aligned_cols=12  Identities=25%  Similarity=0.861  Sum_probs=7.0

Q ss_pred             ceecCCCCCCcc
Q psy3949          37 RFVCYTCPYHTT   48 (103)
Q Consensus        37 ~~~c~~c~~~~~   48 (103)
                      .|.|..||..+.
T Consensus         3 ~y~C~vCGyvYd   14 (54)
T 4rxn_A            3 KYTCTVCGYIYD   14 (54)
T ss_dssp             CEEETTTCCEEC
T ss_pred             ceECCCCCeEEC
Confidence            366666665544

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=86.42  E-value=0.49  Score=24.79  Aligned_cols=10  Identities=20%  Similarity=0.501  Sum_probs=4.6

Q ss_pred             eecCCCCCCc
Q psy3949          38 FVCYTCPYHT   47 (103)
Q Consensus        38 ~~c~~c~~~~   47 (103)
                      |.|..||..|
T Consensus        74 ~~C~~CG~~~   83 (119)
T 2kdx_A           74 LECKDCSHVF   83 (119)
T ss_dssp             EECSSSSCEE
T ss_pred             EEcCCCCCEE
Confidence            4444444443

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=86.16  E-value=0.1  Score=27.32  Aligned_cols=11  Identities=0%  Similarity=-0.100  Sum_probs=6.9

Q ss_pred             cCCCCCccccC
Q psy3949          93 SSNSHDITFVM  103 (103)
Q Consensus        93 ~~~C~~C~~~~  103 (103)
                      .|.|+.|+++|
T Consensus        78 IW~C~~Cgk~f   88 (116)
T 3cc2_Z           78 IWQCSYCDYKF   88 (116)
T ss_dssp             EEEETTTCCEE
T ss_pred             eEECCCCCCEE
Confidence            56666666654

>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A

Probab=84.74  E-value=1  Score=20.02  Aligned_cols=12  Identities=33%  Similarity=0.885  Sum_probs=6.9

Q ss_pred             ceecCCCCCCcc
Q psy3949          37 RFVCYTCPYHTT   48 (103)
Q Consensus        37 ~~~c~~c~~~~~   48 (103)
                      .|.|..||..+.
T Consensus         3 ~y~C~~CGyvYd   14 (52)
T 1e8j_A            3 IYVCTVCGYEYD   14 (52)
T ss_dssp             CEECSSSCCCCC
T ss_pred             cEEeCCCCeEEc
Confidence            366666665543

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=84.44  E-value=0.23  Score=23.85  Aligned_cols=11  Identities=27%  Similarity=0.875  Sum_probs=5.6

Q ss_pred             ccCCcCccccc
Q psy3949          66 YKCLFCDYHCT   76 (103)
Q Consensus        66 ~~c~~c~~~f~   76 (103)
                      +.|..|++.|.
T Consensus        46 W~C~~C~~~~A   56 (73)
T 1ffk_W           46 WVCGHCGYKIA   56 (73)
T ss_pred             EECCCCCcEEE
Confidence            55555555443

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=83.95  E-value=1.6  Score=20.54  Aligned_cols=47  Identities=21%  Similarity=0.573  Sum_probs=25.9

Q ss_pred             ceec-CCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhh
Q psy3949          37 RFVC-YTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHM   85 (103)
Q Consensus        37 ~~~c-~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~   85 (103)
                      +-.| ..|+..+. ...|..|+...=..++..|..|+..+... .+..|.
T Consensus        16 ~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~~-~l~~H~   63 (76)
T 2yuc_A           16 VIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSGE-AYESHE   63 (76)
T ss_dssp             CCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCHH-HHHHTT
T ss_pred             ccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccCHH-HHHHHH
Confidence            3467 46776554 34455554432233556788887765543 455565

>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...

Probab=83.87  E-value=0.47  Score=21.16  Aligned_cols=12  Identities=25%  Similarity=0.725  Sum_probs=6.6

Q ss_pred             ceecCCCCCCcc
Q psy3949          37 RFVCYTCPYHTT   48 (103)
Q Consensus        37 ~~~c~~c~~~~~   48 (103)
                      .|.|..||..+.
T Consensus         2 ~~~C~~CGyvYd   13 (52)
T 1yk4_A            2 KLSCKICGYIYD   13 (52)
T ss_dssp             EEEESSSSCEEE
T ss_pred             cEEeCCCCeEEC
Confidence            356666665543

>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}

Probab=83.59  E-value=0.52  Score=23.13  Aligned_cols=12  Identities=25%  Similarity=0.753  Sum_probs=7.3

Q ss_pred             ceecCCCCCCcc
Q psy3949          37 RFVCYTCPYHTT   48 (103)
Q Consensus        37 ~~~c~~c~~~~~   48 (103)
                      .|.|..||..+.
T Consensus        27 ~y~C~vCGyvYD   38 (81)
T 2kn9_A           27 LFRCIQCGFEYD   38 (81)
T ss_dssp             EEEETTTCCEEE
T ss_pred             eEEeCCCCEEEc
Confidence            466776765544

>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}

Probab=82.84  E-value=0.62  Score=21.03  Aligned_cols=12  Identities=17%  Similarity=0.725  Sum_probs=7.2

Q ss_pred             ceecCCCCCCcc
Q psy3949          37 RFVCYTCPYHTT   48 (103)
Q Consensus        37 ~~~c~~c~~~~~   48 (103)
                      .|.|..||..+.
T Consensus         3 ~y~C~~CGyvYd   14 (55)
T 2v3b_B            3 KWQCVVCGFIYD   14 (55)
T ss_dssp             EEEETTTCCEEE
T ss_pred             cEEeCCCCeEEC
Confidence            466777765543

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=81.86  E-value=1.1  Score=20.06  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=19.1

Q ss_pred             CCCCcceecCCCCCCccchhHHHHHHH
Q psy3949          32 PDHNYRFVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus        32 ~~~~~~~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      |+++.+ .|..|+..+.....++.|+.
T Consensus         9 ~~~P~~-eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A            9 TDGTKP-ECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             CCCCCS-CCTTTTCCCCSSSCHHHHHT
T ss_pred             CCCCCc-cccccCcccccccchhhhhc
Confidence            334434 78999988888888888864

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=81.51  E-value=0.23  Score=24.45  Aligned_cols=10  Identities=0%  Similarity=-0.233  Sum_probs=4.7

Q ss_pred             cCCCCCcccc
Q psy3949          93 SSNSHDITFV  102 (103)
Q Consensus        93 ~~~C~~C~~~  102 (103)
                      .|.|..|+++
T Consensus        53 IW~C~kCg~~   62 (83)
T 3j21_i           53 IWQCQKCGAT   62 (83)
T ss_dssp             EEEETTTCCE
T ss_pred             eEEcCCCCCE
Confidence            3445555444

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=81.29  E-value=1.2  Score=18.25  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=13.3

Q ss_pred             ceecCCCCCCccchhHHHHHHH
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      ...|..|+-.|.....+..|..
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhhe
Confidence            3456666666666666666544

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=80.27  E-value=2.1  Score=19.91  Aligned_cols=30  Identities=17%  Similarity=0.451  Sum_probs=21.2

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCccccc
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCT   76 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~   76 (103)
                      +.|.|..|+..+.....           .+..|..||....
T Consensus        20 v~Y~C~~Cg~~~~l~~~-----------~~iRC~~CG~RIL   49 (63)
T 3h0g_L           20 MIYLCADCGARNTIQAK-----------EVIRCRECGHRVM   49 (63)
T ss_dssp             CCCBCSSSCCBCCCCSS-----------SCCCCSSSCCCCC
T ss_pred             eEEECCCCCCeeecCCC-----------CceECCCCCcEEE
Confidence            46889999888876643           3577888886543

>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*

Probab=80.21  E-value=0.67  Score=25.08  Aligned_cols=11  Identities=36%  Similarity=1.074  Sum_probs=6.0

Q ss_pred             ccCCcCccccc
Q psy3949          66 YKCLFCDYHCT   76 (103)
Q Consensus        66 ~~c~~c~~~f~   76 (103)
                      +.|..||..|.
T Consensus        71 ~~C~~CG~~~~   81 (139)
T 3a43_A           71 FKCRNCNYEWK   81 (139)
T ss_dssp             EEETTTCCEEE
T ss_pred             EECCCCCCEEe
Confidence            45555655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	8e-07
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-06
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	1e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	1e-05
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-05
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	1e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	5e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.001
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	0.001

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 8e-07
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
          R HSGEKPY+C  C    TQSG ++ H+  KH
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 6e-06
 Identities = 15/32 (46%), Positives = 16/32 (50%)

Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
          R H+GEKPY C  CD    Q   L  H K  H
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (87), Expect = 1e-05
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
          HSGEKPY C+ C    ++S  L +H ++
Sbjct: 2  HSGEKPYGCVECGKAFSRSSILVQHQRV 29

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 1e-05
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
            R  +G KP++C  CD   ++S  L  H K 
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 1e-05
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
             +    + YKC  C    + S  L +H + 
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 34

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (79), Expect = 1e-04
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
           SG++P+ C  C    T      RH+K+
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLKV 29

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (76), Expect = 5e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
          S  KPY C  C    ++   L  H+K  H
Sbjct: 1  SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (73), Expect = 0.001
 Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 38 FVCYTCPYHTTYSQSMKSHLRK-HSGEKPYKC 68
          ++C +C    +    +  H+++ H+ E+P+KC
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.6 bits (72), Expect = 0.001
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 35 NYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF 70
          ++      C     + + +K H++ HS  + Y C F
Sbjct: 1  SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.74
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.64
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.5
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.49
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.36
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.35
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.34
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.33
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.31
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.31
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.22
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.17
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.15
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.14
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.09
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.09
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.08
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.04
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.04
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.04
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.01
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.01
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.0
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.94
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.93
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.84
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.79
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.77
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.76
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.75
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.75
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.69
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.64
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.59
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.43
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.42
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.41
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.4
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.4
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.36
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.28
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.23
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.14
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.05
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.0
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.8
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.79
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.77
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.76
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.75
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.73
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.73
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.7
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.65
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.45
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.44
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.4
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.33
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.29
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.21
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.18
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.16
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.15
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.09
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.04
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.02
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.01
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.92
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.86
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.71
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.71
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.68
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.44
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.37
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.28
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.19
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.17
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	95.43
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	95.36
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.19
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.0
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.79
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.47
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.13
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.61
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.21
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	92.74
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	91.37
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	90.94
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	90.51
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.96
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	89.68
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	89.51
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	88.57
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	87.99
d1s24a_	56	Two-iron rubredoxin {Pseudomonas oleovorans [TaxId	86.93
d1brfa_	53	Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2	85.56
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.45
d2dsxa1	52	Rubredoxin {Desulfovibrio gigas [TaxId: 879]}	85.1
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	83.01
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	82.14
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	81.22

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-18  Score=79.46  Aligned_cols=52  Identities=29%  Similarity=0.510  Sum_probs=49.7

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCcccccCcchhhhhhhhc
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      ++|.| .||+.|.....|..|+++|++++||.|..|++.|...+.|..|+++|
T Consensus         2 K~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            38999 49999999999999999999999999999999999999999999886

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.6e-17  Score=75.80  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=38.2

Q ss_pred             CCCccCCcCcccccCcchhhhhhhhcccCccCCCCCccccC
Q psy3949          63 EKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFVM  103 (103)
Q Consensus        63 ~~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~~~  103 (103)
                      ++||.|. ||+.|....+|..|+++|+|++||.|++||+.|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F   40 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF   40 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEE
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEe
Confidence            5899995 999999999999999999999999999999987

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.2e-16  Score=66.31  Aligned_cols=37  Identities=22%  Similarity=0.391  Sum_probs=31.3

Q ss_pred             CCCCccCCcCcccccCcchhhhhhh-hcccCccCCCCC
Q psy3949          62 GEKPYKCLFCDYHCTQSGPLRRHMK-IKHLMESSNSHD   98 (103)
Q Consensus        62 ~~~~~~c~~c~~~f~~~~~l~~h~~-~~~~e~~~~C~~   98 (103)
                      .++||.|..|++.|...++|.+|++ +|+||+||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            3688999999999999999999975 699999999874

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-15  Score=64.66  Aligned_cols=37  Identities=19%  Similarity=0.304  Sum_probs=33.8

Q ss_pred             HHHHHhhCCCCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        55 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      .|+.+|++++||.|..|++.|...++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            3667899999999999999999999999999999987

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.2e-15  Score=60.25  Aligned_cols=33  Identities=36%  Similarity=0.630  Sum_probs=28.3

Q ss_pred             HhhCCCCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      +|+|++||.|..|++.|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478888888888888888888888888888886

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.36  E-value=1.4e-13  Score=54.43  Aligned_cols=29  Identities=17%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      +||.|..|++.|...+.|.+|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            47777778888888888888888887775

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1e-13  Score=57.71  Aligned_cols=33  Identities=42%  Similarity=0.662  Sum_probs=26.3

Q ss_pred             HhhCCCCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      +|+|++||.|..|+++|...+.|..|+++|+++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            577888888888888888888888888887764

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.5e-13  Score=53.63  Aligned_cols=29  Identities=24%  Similarity=0.454  Sum_probs=22.4

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      +||.|..|++.|.+.+.|.+|+++|+||+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            47777778888888888888888887775

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1e-13  Score=58.07  Aligned_cols=35  Identities=34%  Similarity=0.540  Sum_probs=30.0

Q ss_pred             HHHHhhCCCCccCCcCcccccCcchhhhhhhhccc
Q psy3949          56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHL   90 (103)
Q Consensus        56 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   90 (103)
                      |++.|+|++||.|..|++.|.+.++|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            56788899999999999999999999999888864

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.4e-13  Score=55.94  Aligned_cols=35  Identities=23%  Similarity=0.649  Sum_probs=32.2

Q ss_pred             cceecCCCCCCccchhHHHHHHH-HhhCCCCccCCc
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLR-KHSGEKPYKCLF   70 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~c~~   70 (103)
                      +||.|..||+.|.....|..|++ +|++++||.|.+
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            39999999999999999999986 799999999863

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=3.6e-13  Score=55.38  Aligned_cols=32  Identities=28%  Similarity=0.557  Sum_probs=23.9

Q ss_pred             hhCCCCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        60 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      |+|++||.|.+|++.|.+.++|.+|+++|+.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            46777777777777777777777777777764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.9e-13  Score=56.12  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=25.8

Q ss_pred             ccCCc--CcccccCcchhhhhhhhcccCccCCCC
Q psy3949          66 YKCLF--CDYHCTQSGPLRRHMKIKHLMESSNSH   97 (103)
Q Consensus        66 ~~c~~--c~~~f~~~~~l~~h~~~~~~e~~~~C~   97 (103)
                      |.|..  |++.|...+.|.+|+++|+||+||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45654  888888888888888888888888886

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=4.5e-13  Score=52.39  Aligned_cols=28  Identities=25%  Similarity=0.605  Sum_probs=16.9

Q ss_pred             CCCccCCcCcccccCcchhhhhhhhccc
Q psy3949          63 EKPYKCLFCDYHCTQSGPLRRHMKIKHL   90 (103)
Q Consensus        63 ~~~~~c~~c~~~f~~~~~l~~h~~~~~~   90 (103)
                      ++||.|..|++.|.+++.|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            3566666666666666666666666654

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=2.7e-13  Score=59.54  Aligned_cols=39  Identities=21%  Similarity=0.453  Sum_probs=33.3

Q ss_pred             HHHHHHHhhCCCCccCCc--CcccccCcchhhhhhhhcccCc
Q psy3949          53 MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        53 l~~h~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      +..|+ .|.+++||.|..  |++.|...++|..|+++|+||+
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34455 489999999976  9999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.3e-12  Score=53.40  Aligned_cols=31  Identities=52%  Similarity=0.987  Sum_probs=23.6

Q ss_pred             HhhCCCCccCCcCcccccCcchhhhhhhhcc
Q psy3949          59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        59 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      +|+|++||.|..|++.|...++|.+|++.++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            5778888888888888888888888865543

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.3e-12  Score=48.43  Aligned_cols=25  Identities=44%  Similarity=0.792  Sum_probs=14.1

Q ss_pred             CCccCCcCcccccCcchhhhhhhhc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      +||.|.+||+.|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            3555555555555555555555555

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.3e-11  Score=49.21  Aligned_cols=27  Identities=30%  Similarity=0.528  Sum_probs=26.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      ||.|..||+.|...+.|..|+++|+|+
T Consensus         7 py~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           7 PYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CeeCCCCCCEeCchHHhHhhccccCCC
Confidence            999999999999999999999999985

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.8e-11  Score=48.48  Aligned_cols=28  Identities=29%  Similarity=0.557  Sum_probs=19.6

Q ss_pred             CCccCCc--CcccccCcchhhhhhhhcccC
Q psy3949          64 KPYKCLF--CDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        64 ~~~~c~~--c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      +||.|..  |++.|..++.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4666765  777777777777777777765

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.09  E-value=3.6e-11  Score=47.32  Aligned_cols=28  Identities=36%  Similarity=0.686  Sum_probs=26.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      ||.|++|++.|...+.|..|+++|+|++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCCC
Confidence            8999999999999999999999999975

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5.2e-11  Score=46.80  Aligned_cols=28  Identities=29%  Similarity=0.710  Sum_probs=26.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      ||.|++|++.|..++.|..|+++|+|++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCcC
Confidence            8999999999999999999999999875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.7e-11  Score=48.02  Aligned_cols=28  Identities=32%  Similarity=0.642  Sum_probs=17.0

Q ss_pred             CCccCCc--CcccccCcchhhhhhhhcccC
Q psy3949          64 KPYKCLF--CDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        64 ~~~~c~~--c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      +||.|..  |++.|...+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            3556644  666666666666666666654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.8e-11  Score=47.62  Aligned_cols=29  Identities=28%  Similarity=0.649  Sum_probs=22.2

Q ss_pred             CCccCC--cCcccccCcchhhhhhhhcccCc
Q psy3949          64 KPYKCL--FCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        64 ~~~~c~--~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      +||.|.  .|++.|...++|.+|+++|+||+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            467774  48888888888888888888875

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.1e-11  Score=51.12  Aligned_cols=27  Identities=33%  Similarity=0.662  Sum_probs=26.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      ||.|++||+.|...+.|..|+++|+|+
T Consensus        12 py~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2          12 RYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CEecCCCCceeeCHHHHHHhCccCCCC
Confidence            999999999999999999999999885

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.1e-10  Score=48.28  Aligned_cols=33  Identities=18%  Similarity=0.434  Sum_probs=30.1

Q ss_pred             hhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          21 SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        21 ~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      +|+|+     +     ||.|.+||+.|...+.|..|+++|.++
T Consensus         2 ~HTge-----k-----Py~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGE-----K-----PYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCC-----C-----CEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCC-----C-----CEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            57777     7     999999999999999999999999775

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1.5e-10  Score=45.05  Aligned_cols=27  Identities=30%  Similarity=0.650  Sum_probs=25.4

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhC
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      +||.|++|++.|..+++|..|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            399999999999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.1e-10  Score=47.24  Aligned_cols=32  Identities=28%  Similarity=0.697  Sum_probs=28.7

Q ss_pred             eecCC--CCCCccchhHHHHHHHHhhCCCCccCC
Q psy3949          38 FVCYT--CPYHTTYSQSMKSHLRKHSGEKPYKCL   69 (103)
Q Consensus        38 ~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~   69 (103)
                      |.|+.  |++.|.....|..|+++|+|++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56775  999999999999999999999999885

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.1e-10  Score=43.12  Aligned_cols=26  Identities=19%  Similarity=0.437  Sum_probs=23.9

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhh
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHS   61 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~   61 (103)
                      +||.|.+||+.|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            38999999999999999999999885

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=4.1e-10  Score=46.05  Aligned_cols=29  Identities=28%  Similarity=0.431  Sum_probs=26.5

Q ss_pred             cceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        36 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      +||.|+.|++.|.....|..|+++|++..
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             ccccCCCCCCcccChHHHHHHccccCCcC
Confidence            39999999999999999999999998753

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=1e-09  Score=45.57  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=29.2

Q ss_pred             HhhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhC
Q psy3949          20 LSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        20 ~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      +.|+++     +     ||.|+.|++.|..++.|..|++.|.+
T Consensus         4 R~HTge-----K-----Py~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           4 RGSTGI-----K-----PFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             STTCCS-----S-----SBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CccCCc-----c-----CeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            456777     7     99999999999999999999998864

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=6.4e-10  Score=43.50  Aligned_cols=27  Identities=37%  Similarity=0.812  Sum_probs=15.9

Q ss_pred             CCccCCc--CcccccCcchhhhhhhhccc
Q psy3949          64 KPYKCLF--CDYHCTQSGPLRRHMKIKHL   90 (103)
Q Consensus        64 ~~~~c~~--c~~~f~~~~~l~~h~~~~~~   90 (103)
                      +||.|..  |++.|..++.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            3555544  66666666666666666654

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3e-09  Score=41.87  Aligned_cols=27  Identities=33%  Similarity=0.634  Sum_probs=25.0

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      ||.|+.  |++.|..++.|..|+++|+|+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            789988  999999999999999999885

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=3e-09  Score=42.48  Aligned_cols=28  Identities=32%  Similarity=0.624  Sum_probs=19.9

Q ss_pred             CCCccCCc--CcccccCcchhhhhhhhccc
Q psy3949          63 EKPYKCLF--CDYHCTQSGPLRRHMKIKHL   90 (103)
Q Consensus        63 ~~~~~c~~--c~~~f~~~~~l~~h~~~~~~   90 (103)
                      ++||.|..  |++.|...+.|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            46777765  77777777777777777765

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.5e-09  Score=41.41  Aligned_cols=27  Identities=26%  Similarity=0.651  Sum_probs=25.1

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      ||.|+.  |++.|...++|..|+++|+|+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCCC
Confidence            899987  999999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3e-09  Score=43.78  Aligned_cols=32  Identities=28%  Similarity=0.578  Sum_probs=27.6

Q ss_pred             hhhCCCccccCCCCCcceecCCCCCCccchhHHHHHHHHhhC
Q psy3949          21 SHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        21 ~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      +|+|+     +     ||.|+.|++.|...+.|..|+..+.+
T Consensus         2 ~HTge-----k-----P~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSGE-----K-----PYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSCC-----C-----SEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             ccCCC-----C-----CEeCCCCcccccchHHHHHHcccccC
Confidence            57777     7     99999999999999999999865443

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4e-09  Score=40.76  Aligned_cols=26  Identities=35%  Similarity=0.764  Sum_probs=19.3

Q ss_pred             CCccCCc--CcccccCcchhhhhhhhcc
Q psy3949          64 KPYKCLF--CDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        64 ~~~~c~~--c~~~f~~~~~l~~h~~~~~   89 (103)
                      +||.|..  |++.|..+++|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4677755  7888888888888877764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.4e-09  Score=40.44  Aligned_cols=29  Identities=17%  Similarity=0.148  Sum_probs=15.3

Q ss_pred             ccCCcCcccccCcchhhhhhhhcccCccC
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKIKHLMESS   94 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~~~~e~~~   94 (103)
                      ..|..||+.|.....|.+|.-.|.+|+||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            34555555555555555555555555554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.5e-09  Score=40.90  Aligned_cols=28  Identities=39%  Similarity=0.706  Sum_probs=25.0

Q ss_pred             ceecC--CCCCCccchhHHHHHHHHhhCCC
Q psy3949          37 RFVCY--TCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      ||.|+  .|++.|...++|..|+++|+|++
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            78885  59999999999999999999875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=1.2e-08  Score=44.33  Aligned_cols=34  Identities=18%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             hhhCCCccccCCCCCcceecCC--CCCCccchhHHHHHHHHhhCCC
Q psy3949          21 SHTKSCTYISRPDHNYRFVCYT--CPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        21 ~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      .|.++     +     ||.|..  |++.|...+.|..|+++|+|++
T Consensus        12 ~h~ge-----k-----py~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          12 KEMPD-----K-----TFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETT-----T-----EEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCC-----C-----CeECCcCCCCccccCchHHHhhcccccCCC
Confidence            46777     7     999987  9999999999999999999975

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=4.2e-08  Score=38.18  Aligned_cols=26  Identities=27%  Similarity=0.648  Sum_probs=24.0

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHhhC
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~~~   62 (103)
                      ||.|..  |++.|...++|..|+++|+|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            899987  99999999999999999976

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.4e-08  Score=37.78  Aligned_cols=30  Identities=33%  Similarity=0.552  Sum_probs=28.3

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPY   66 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   66 (103)
                      ...|+.||+.|....+|..|..+|.+++||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            678999999999999999999999999997

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6.2e-08  Score=35.99  Aligned_cols=29  Identities=31%  Similarity=0.670  Sum_probs=20.4

Q ss_pred             CCCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          63 EKPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        63 ~~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      ++||+|..|......++.|.-|++.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            35777777777777777777777777763

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.9e-08  Score=35.18  Aligned_cols=26  Identities=27%  Similarity=0.535  Sum_probs=17.4

Q ss_pred             CccCCcCcccccCcchhhhhhhhccc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKHL   90 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~~   90 (103)
                      |.+|..|++.|+....|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            34566677777777777777776664

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=6.7e-08  Score=36.15  Aligned_cols=27  Identities=37%  Similarity=0.711  Sum_probs=21.4

Q ss_pred             CCCccCCcCcccccCcchhhhhhhhcc
Q psy3949          63 EKPYKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        63 ~~~~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      ++||.|..||+.|..+....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            468888888888888888888887774

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=7e-08  Score=36.02  Aligned_cols=26  Identities=19%  Similarity=0.519  Sum_probs=15.0

Q ss_pred             ccCCcCcccccCcchhhhhhhhcccC
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      |.|..|+.....++.|..|+++|++|
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            44555555555566666666666554

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.1e-07  Score=35.13  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=16.7

Q ss_pred             ccCCcCcccccCcchhhhhhhhcccC
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      ..|..||+.|..++.|.+|+-.|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            34566666666666666666666664

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=4e-07  Score=36.10  Aligned_cols=26  Identities=15%  Similarity=0.395  Sum_probs=24.0

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHhhC
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~~~   62 (103)
                      ||.|..  |++.|....+|..|+++|+.
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            899988  99999999999999999875

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.5e-07  Score=35.56  Aligned_cols=25  Identities=32%  Similarity=0.596  Sum_probs=20.0

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHhh
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKHS   61 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~~   61 (103)
                      ||.|+.  |++.|...++|..|++.|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            677877  8888888888888888774

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.2e-06  Score=32.59  Aligned_cols=27  Identities=22%  Similarity=0.650  Sum_probs=24.7

Q ss_pred             eecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      |.|+.||......+.|+.|++.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            689999999999999999999998864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.1e-06  Score=31.77  Aligned_cols=25  Identities=28%  Similarity=0.592  Sum_probs=16.4

Q ss_pred             eecCCCCCCccchhHHHHHHHHhhC
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      ..|+.|++.|..+..|..|++.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            3566677777777777777666653

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.4e-06  Score=31.43  Aligned_cols=27  Identities=33%  Similarity=0.484  Sum_probs=22.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      ...|.+||+.|..++.|..|+..|+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            457889999999999999888888774

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3e-06  Score=32.02  Aligned_cols=27  Identities=26%  Similarity=0.586  Sum_probs=21.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      ||.|++|+..|..+..+.-|.++|.|.
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CcccchHHHHhhccccceEeeecccCc
Confidence            788888888888888888888887764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.3e-06  Score=33.08  Aligned_cols=29  Identities=24%  Similarity=0.557  Sum_probs=26.1

Q ss_pred             CCCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          63 EKPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        63 ~~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      ++||.|++|...|....-+.-|.+.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999998763

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.5e-06  Score=31.46  Aligned_cols=26  Identities=38%  Similarity=0.994  Sum_probs=20.3

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      +||+|..|......+++|..|+++.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            57888888888888888888887733

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=9.6e-06  Score=30.17  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=22.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhh
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHS   61 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~   61 (103)
                      ||.|+.||+.|..+.....|..+|.
T Consensus         3 Pf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           3 PFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             Ccccchhhhhhhcchhhhhhhhhcc
Confidence            9999999999999998888887763

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=6.3e-06  Score=30.21  Aligned_cols=25  Identities=48%  Similarity=1.069  Sum_probs=14.4

Q ss_pred             CCccCCcCcccccCcchhhhhhhhc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~   88 (103)
                      +|++|..|...-..+++|..|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            4555555555555555565565555

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=5.8e-06  Score=31.20  Aligned_cols=25  Identities=40%  Similarity=0.868  Sum_probs=14.4

Q ss_pred             CccCCc--CcccccCcchhhhhhhhcc
Q psy3949          65 PYKCLF--CDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        65 ~~~c~~--c~~~f~~~~~l~~h~~~~~   89 (103)
                      ||.|..  |++.+..+++|.+|++.++
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhC
Confidence            455543  6666666666666666544

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=1.5e-05  Score=32.21  Aligned_cols=28  Identities=18%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEK   64 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~   64 (103)
                      .|.|..|++.|.+..+|-.|+..|..++
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             ccCCCCCCCccCCcccccchHhhhcchH
Confidence            5777777777777777777777775543

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.75  E-value=6.7e-06  Score=33.23  Aligned_cols=30  Identities=23%  Similarity=0.570  Sum_probs=26.6

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCcc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLMES   93 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~   93 (103)
                      +.|.|..|++.|.+..+|--|++.|..++.
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchHH
Confidence            568999999999999999999999977653

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=9.9e-06  Score=29.91  Aligned_cols=27  Identities=41%  Similarity=0.934  Sum_probs=24.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      ||.|..|...-..++.|..|++.|+|+
T Consensus         3 pfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           3 PFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             cceeeecccccCCchheEEeeecccCc
Confidence            899999999999999999999998874

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.1e-05  Score=30.71  Aligned_cols=27  Identities=22%  Similarity=0.513  Sum_probs=20.0

Q ss_pred             CCccCCc--CcccccCcchhhhhh-hhccc
Q psy3949          64 KPYKCLF--CDYHCTQSGPLRRHM-KIKHL   90 (103)
Q Consensus        64 ~~~~c~~--c~~~f~~~~~l~~h~-~~~~~   90 (103)
                      +||.|..  |.++|+.++....|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            4677755  888888888888886 66654

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=8.2e-06  Score=29.55  Aligned_cols=24  Identities=42%  Similarity=0.618  Sum_probs=11.9

Q ss_pred             cCCCCCCccchhHHHHHHHHhhCC
Q psy3949          40 CYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        40 c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      |+.|.+.|.++.-|..|-+.|+|+
T Consensus         3 cp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             CcchHHHHHHhHhhhhccccccCC
Confidence            444555555555555554444443

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.65  E-value=1.4e-05  Score=28.51  Aligned_cols=24  Identities=29%  Similarity=0.757  Sum_probs=17.2

Q ss_pred             ccCCcCcccccCcchhhhhhhhcc
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      |+|..|.+.|...++|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            456677777777777777777663

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=7.2e-05  Score=30.39  Aligned_cols=25  Identities=16%  Similarity=0.396  Sum_probs=18.5

Q ss_pred             CCcceecCCCCCCccchhHHHHHHH
Q psy3949          34 HNYRFVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus        34 ~~~~~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      +.+||.|..|++.|-+..++..|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            4458888888888888877777754

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=9.8e-05  Score=26.63  Aligned_cols=27  Identities=15%  Similarity=0.160  Sum_probs=20.0

Q ss_pred             ccCCcCcccccCcchhhhhhhhcccCc
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKIKHLME   92 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~~~~e~   92 (103)
                      .+|+.|.+.|.+..-|.-|-+.|+||+
T Consensus         1 vqcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           1 VECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             CcCcchHHHHHHhHhhhhccccccCCC
Confidence            036778888888888888888888775

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.40  E-value=3.4e-05  Score=28.53  Aligned_cols=25  Identities=36%  Similarity=0.794  Sum_probs=16.7

Q ss_pred             CCccCCc--CcccccCcchhhhhhhhc
Q psy3949          64 KPYKCLF--CDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        64 ~~~~c~~--c~~~f~~~~~l~~h~~~~   88 (103)
                      .||.|..  |++.|+.++-|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            3566643  777777777777776665

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=5e-05  Score=28.19  Aligned_cols=27  Identities=37%  Similarity=0.840  Sum_probs=17.8

Q ss_pred             CCccCCcCcccccCcchhhhhhhhccc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHL   90 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~   90 (103)
                      +||+|..|...-.+.++|..|++..+|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            366777776666677777777665444

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00012  Score=26.74  Aligned_cols=25  Identities=44%  Similarity=0.796  Sum_probs=23.1

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhh
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHS   61 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~   61 (103)
                      |+.|..|...-..+++|..|+++|.
T Consensus         3 p~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           3 PYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CcccccccchhcchhhHhhhhhccc
Confidence            8999999999999999999999875

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00016  Score=27.16  Aligned_cols=25  Identities=24%  Similarity=0.539  Sum_probs=21.8

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHhh
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKHS   61 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~~   61 (103)
                      ||.|..  |++++...++|..|+..+.
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhC
Confidence            788887  9999999999999998654

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=8.9e-05  Score=30.12  Aligned_cols=27  Identities=30%  Similarity=0.664  Sum_probs=23.6

Q ss_pred             hCCCCccCCcCcccccCcchhhhhhhh
Q psy3949          61 SGEKPYKCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        61 ~~~~~~~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      +|-+||.|..|++.|-+..++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            367899999999999999999999754

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.16  E-value=0.00016  Score=25.66  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=18.1

Q ss_pred             eecCCCCCCccchhHHHHHHHHh
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRKH   60 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~~   60 (103)
                      |.|..|.+.|..++.|..|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45778888888888888888766

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00024  Score=26.18  Aligned_cols=27  Identities=26%  Similarity=0.565  Sum_probs=22.7

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      -|.|..|...|...-.|..|+.+|+|+
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccCC
Confidence            578888988888888888888888774

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.09  E-value=0.00013  Score=27.67  Aligned_cols=26  Identities=31%  Similarity=0.549  Sum_probs=16.1

Q ss_pred             CccCCcCcccccCcchhhhhhhh-ccc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKI-KHL   90 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~-~~~   90 (103)
                      ||.|..|++.|....-+.+|+.. |.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            56666677777766666666543 443

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.0002  Score=26.38  Aligned_cols=29  Identities=24%  Similarity=0.356  Sum_probs=26.3

Q ss_pred             CCCccCCcCcccccCcchhhhhhhhcccC
Q psy3949          63 EKPYKCLFCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        63 ~~~~~c~~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      +..|.|..|...|...-.|.-|+-.|+||
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45789999999999999999999999986

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.02  E-value=0.00018  Score=26.59  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=15.1

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHhhC
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~~~   62 (103)
                      ||.|..  |.+.|.+.-+|..|...|+|
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            444443  66666666666666666655

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.01  E-value=0.00047  Score=25.48  Aligned_cols=28  Identities=29%  Similarity=0.380  Sum_probs=22.8

Q ss_pred             CCccCC--cCcccccCcchhhhhhhhcccC
Q psy3949          64 KPYKCL--FCDYHCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        64 ~~~~c~--~c~~~f~~~~~l~~h~~~~~~e   91 (103)
                      +||.|.  -|.+.|.....|.+|.-+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            467774  4889999999999998888886

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00031  Score=25.94  Aligned_cols=22  Identities=14%  Similarity=0.545  Sum_probs=13.4

Q ss_pred             ceecCCCCCCccchhHHHHHHH
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      ||.|..|.-.|..+..|..|+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            3556666666666666666655

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00054  Score=24.23  Aligned_cols=22  Identities=18%  Similarity=0.538  Sum_probs=13.6

Q ss_pred             ceecCCCCCCccchhHHHHHHH
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      ||.|..|...|-.+..|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666653

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00054  Score=24.97  Aligned_cols=25  Identities=40%  Similarity=0.848  Sum_probs=16.2

Q ss_pred             CccCCcCcccccCcchhhhhhhhcc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      |.+|..|....++..+|..|.++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4556666666666677766666653

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00025  Score=27.69  Aligned_cols=18  Identities=17%  Similarity=-0.066  Sum_probs=8.4

Q ss_pred             cccCcchhhhhhhhcccC
Q psy3949          74 HCTQSGPLRRHMKIKHLM   91 (103)
Q Consensus        74 ~f~~~~~l~~h~~~~~~e   91 (103)
                      .|.....|..|+|.|+||
T Consensus        16 pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          16 PFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCSSHHHHHHHTHHHHCC
T ss_pred             cchhHHHHHHHHhhcCCC
Confidence            344444444455544443

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00047  Score=25.43  Aligned_cols=25  Identities=40%  Similarity=1.007  Sum_probs=22.2

Q ss_pred             CccCCcCcccccCcchhhhhhhhcc
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      ||.|..|...|....+|..|++...
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhh
Confidence            6889999999999999999998743

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0021  Score=23.75  Aligned_cols=23  Identities=22%  Similarity=0.720  Sum_probs=20.0

Q ss_pred             ceecCCCCCCccchhHHHHHHHH
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRK   59 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~   59 (103)
                      ||.|..|......++.|..|+..
T Consensus         2 py~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhc
Confidence            78999999888888999988875

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.37  E-value=0.0025  Score=23.33  Aligned_cols=24  Identities=21%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHh
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKH   60 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~   60 (103)
                      ||.|+.  |++.|...+.|..|...|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            788876  999999999999988766

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.00095  Score=24.14  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=15.5

Q ss_pred             CccCCcCcccccCcchhhhhh
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHM   85 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~   85 (103)
                      ||.|..||+.+....+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            577778888777777777664

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0029  Score=25.18  Aligned_cols=27  Identities=26%  Similarity=0.429  Sum_probs=22.2

Q ss_pred             cceecC--CCCCCccchhHHHHHHHHhhC
Q psy3949          36 YRFVCY--TCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        36 ~~~~c~--~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      +||.|.  -|+.+|.+..+|..|...|.-
T Consensus         5 kPF~C~~pGC~q~F~neDhL~vHk~KH~m   33 (38)
T d1bhia_           5 KPFLCTAPGCGQRFTNEDHLAVHKHKHEM   33 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CceecCCCCccccccchHHHHHhhhhhee
Confidence            389995  499999999999999887753

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0029  Score=24.59  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=18.9

Q ss_pred             cCCCCCCccchhHHHHHHHHhhCC
Q psy3949          40 CYTCPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        40 c~~c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      |+.-++.|.....|..|++.|+|+
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            444456688889999999999885

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.43  E-value=0.0037  Score=25.05  Aligned_cols=11  Identities=36%  Similarity=0.818  Sum_probs=5.1

Q ss_pred             CCCCccCCcCc
Q psy3949          62 GEKPYKCLFCD   72 (103)
Q Consensus        62 ~~~~~~c~~c~   72 (103)
                      |+.|-.|+.|+
T Consensus        17 g~~P~~CPvCg   27 (37)
T d1nnqa2          17 DEAPEYCPVCG   27 (37)
T ss_dssp             SCCCSBCTTTC
T ss_pred             CCCCCcCCCCC
Confidence            34444455544

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=95.36  E-value=0.0048  Score=24.52  Aligned_cols=12  Identities=42%  Similarity=0.686  Sum_probs=6.3

Q ss_pred             hCCCCccCCcCc
Q psy3949          61 SGEKPYKCLFCD   72 (103)
Q Consensus        61 ~~~~~~~c~~c~   72 (103)
                      .|+.|-.|+.|+
T Consensus        16 ~g~~Pe~CPvCg   27 (36)
T d1yuza2          16 KGEDFEKCPICF   27 (36)
T ss_dssp             ESSCCSBCTTTC
T ss_pred             eCCCCCcCCCCC
Confidence            344455555555

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0049  Score=23.72  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=13.2

Q ss_pred             ccCCcCcccccCcchhhhhhhhcc
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      |.|..|++.|...-.+.+|....+
T Consensus         5 fvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeecccccchhcchHHHHHhhhcC
Confidence            555556666665555555554433

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.01  Score=24.76  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=22.2

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      -+.|..|++.|.....|.+|...|-.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeeccccccccCCHHHHhHhHHhcCc
Confidence            46799999999999999999887743

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.00  E-value=0.0049  Score=23.48  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=17.0

Q ss_pred             ccCCcCcccccCcchhhhhhhh
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      |.|..||-.|++.+.|..|+..
T Consensus         9 f~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTTT
T ss_pred             eeccccceeecChhHHHhhhhe
Confidence            6788888888888888877743

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.0053  Score=25.65  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=22.2

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKH   89 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~   89 (103)
                      ..+.|..|++.|.....|.+|...|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35889999999999999999977653

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.036  Score=20.21  Aligned_cols=22  Identities=27%  Similarity=0.470  Sum_probs=15.3

Q ss_pred             eecCCCCCCccchhHHHHHHHH
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLRK   59 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~~   59 (103)
                      |.|..||+...+...+.-|...
T Consensus         3 ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEee
Confidence            5677777777777777666654

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.13  E-value=0.034  Score=20.63  Aligned_cols=27  Identities=33%  Similarity=0.717  Sum_probs=20.1

Q ss_pred             ceecCC--CCCCccchhHHHHHHHHhhCC
Q psy3949          37 RFVCYT--CPYHTTYSQSMKSHLRKHSGE   63 (103)
Q Consensus        37 ~~~c~~--c~~~~~~~~~l~~h~~~~~~~   63 (103)
                      .|.|..  |+..+-....|+.|+-.|+|+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            466654  777777778888888888774

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.61  E-value=0.04  Score=19.29  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=14.3

Q ss_pred             eecCCCCCCccchhHHHHHHH
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      |.|+.|-+.|..+..+..|..
T Consensus         2 ypcp~cfkeftrkdnm~ahvk   22 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVK   22 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEE
Confidence            567777777777777666654

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.21  E-value=0.03  Score=23.20  Aligned_cols=24  Identities=38%  Similarity=0.689  Sum_probs=11.7

Q ss_pred             CCccCCcCcccccCcchhhhhhhh
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      .|..|+.|+....++.+|.+|+..
T Consensus        23 qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHH
Confidence            344455555444455555555443

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.74  E-value=0.05  Score=26.78  Aligned_cols=27  Identities=19%  Similarity=0.330  Sum_probs=20.0

Q ss_pred             CCccCCcCcccccCcchhhhhhhhcccCccCCCCCccc
Q psy3949          64 KPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITF  101 (103)
Q Consensus        64 ~~~~c~~c~~~f~~~~~l~~h~~~~~~e~~~~C~~C~~  101 (103)
                      .|-.|..||..|...           -.+|-+|+.|.-
T Consensus        66 ~Pp~CrkCGfvFr~~-----------~kkPSRCP~CKS   92 (105)
T d2gmga1          66 KPAQCRKCGFVFKAE-----------INIPSRCPKCKS   92 (105)
T ss_dssp             CCCBBTTTCCBCCCC-----------SSCCSSCSSSCC
T ss_pred             eChhhhhcCCeeccc-----------CCCCCCCCCCCC
Confidence            466899999988421           347899999964

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.099  Score=18.70  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=14.8

Q ss_pred             eecCCCCCCccchhHHHHHHH
Q psy3949          38 FVCYTCPYHTTYSQSMKSHLR   58 (103)
Q Consensus        38 ~~c~~c~~~~~~~~~l~~h~~   58 (103)
                      |.|+.|+.....++.|..|++
T Consensus         3 ~qcphc~tiiarksdlrvhlr   23 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLR   23 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhh
Confidence            567777777777777776665

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=90.94  E-value=0.073  Score=22.06  Aligned_cols=12  Identities=33%  Similarity=1.040  Sum_probs=7.9

Q ss_pred             ceecCCCCCCcc
Q psy3949          37 RFVCYTCPYHTT   48 (103)
Q Consensus        37 ~~~c~~c~~~~~   48 (103)
                      .|.|..||..+.
T Consensus         3 ~y~C~~CgyiYd   14 (45)
T d6rxna_           3 KYVCNVCGYEYD   14 (45)
T ss_dssp             CEEETTTCCEEC
T ss_pred             CeEeCCCCeEEC
Confidence            467777776554

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.51  E-value=0.096  Score=23.25  Aligned_cols=35  Identities=20%  Similarity=0.447  Sum_probs=23.9

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhCCCCccCCcCccc
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYH   74 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~   74 (103)
                      .|.|+.|++.|....+++   ........|.|..|+..
T Consensus        14 ~y~Cp~C~~~ys~Lda~~---L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          14 SFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             EEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCB
T ss_pred             ceECCCCCCCcchhhHHH---hcCcCCCeEEecCCCCE
Confidence            789999998887655543   23334456888888753

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=0.038  Score=25.00  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=14.7

Q ss_pred             ccCCcCcccccCcchhhhhhhh
Q psy3949          66 YKCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        66 ~~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      |-|..|++.|.+..+|..|.++
T Consensus        16 fYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTTC
T ss_pred             EecccccCccCCHHHHHHHHcc
Confidence            5566677777777777766554

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.069  Score=19.26  Aligned_cols=18  Identities=17%  Similarity=0.541  Sum_probs=11.2

Q ss_pred             CcccccCcchhhhhhhhc
Q psy3949          71 CDYHCTQSGPLRRHMKIK   88 (103)
Q Consensus        71 c~~~f~~~~~l~~h~~~~   88 (103)
                      |.+.|...+++..|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            666666666666666554

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.031  Score=21.67  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=18.7

Q ss_pred             CccCCcCcccccCcchhhhhhhh
Q psy3949          65 PYKCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        65 ~~~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      ...|..|.+.|.++.++.+|+-.
T Consensus         3 kltclecmrtfkssfsiwrhqve   25 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQVE   25 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhhe
Confidence            35678899999999999998764

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.57  E-value=0.17  Score=21.66  Aligned_cols=12  Identities=25%  Similarity=0.874  Sum_probs=7.0

Q ss_pred             ceecCCCCCCcc
Q psy3949          37 RFVCYTCPYHTT   48 (103)
Q Consensus        37 ~~~c~~c~~~~~   48 (103)
                      .|.|..||..+.
T Consensus         3 ky~C~~CgyiYd   14 (53)
T d1iroa_           3 KYTCTVCGYIYN   14 (53)
T ss_dssp             CEEETTTCCEEC
T ss_pred             CeEcCCCCcEEC
Confidence            366666665543

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=0.25  Score=21.89  Aligned_cols=26  Identities=23%  Similarity=0.510  Sum_probs=23.5

Q ss_pred             ceecCCCCCCccchhHHHHHHHHhhC
Q psy3949          37 RFVCYTCPYHTTYSQSMKSHLRKHSG   62 (103)
Q Consensus        37 ~~~c~~c~~~~~~~~~l~~h~~~~~~   62 (103)
                      -|.|..|...|.+...|..|+..|+.
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhccH
Confidence            58999999999999999999988764

>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Two-iron rubredoxin
species: Pseudomonas oleovorans [TaxId: 301]

Probab=86.93  E-value=0.14  Score=22.19  Aligned_cols=11  Identities=27%  Similarity=0.797  Sum_probs=6.6

Q ss_pred             ceecCCCCCCc
Q psy3949          37 RFVCYTCPYHT   47 (103)
Q Consensus        37 ~~~c~~c~~~~   47 (103)
                      .|.|..||..+
T Consensus         4 ky~C~~CgyiY   14 (56)
T d1s24a_           4 KWICITCGHIY   14 (56)
T ss_dssp             EEEETTTTEEE
T ss_pred             cEECCCCCcEE
Confidence            46666666544

>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.56  E-value=0.25  Score=21.12  Aligned_cols=11  Identities=36%  Similarity=0.890  Sum_probs=6.3

Q ss_pred             eecCCCCCCcc
Q psy3949          38 FVCYTCPYHTT   48 (103)
Q Consensus        38 ~~c~~c~~~~~   48 (103)
                      |.|..||..+.
T Consensus         3 y~C~~CgyiYd   13 (53)
T d1brfa_           3 WVCKICGYIYD   13 (53)
T ss_dssp             EEETTTCCEEE
T ss_pred             eECCCCCcEEC
Confidence            56666665543

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.45  E-value=0.44  Score=16.78  Aligned_cols=18  Identities=22%  Similarity=0.294  Sum_probs=8.8

Q ss_pred             CCCCccchhHHHHHHHHh
Q psy3949          43 CPYHTTYSQSMKSHLRKH   60 (103)
Q Consensus        43 c~~~~~~~~~l~~h~~~~   60 (103)
                      |++.|..-..|..|+.+|
T Consensus         9 c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHHHH
T ss_pred             chHHHhhccceEEEeecc
Confidence            555555444454444444

>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=85.10  E-value=0.35  Score=20.56  Aligned_cols=11  Identities=36%  Similarity=0.966  Sum_probs=6.1

Q ss_pred             ceecCCCCCCc
Q psy3949          37 RFVCYTCPYHT   47 (103)
Q Consensus        37 ~~~c~~c~~~~   47 (103)
                      .|.|..||..+
T Consensus         3 ~y~C~~CgyiY   13 (52)
T d2dsxa1           3 IYVCTVCGYEY   13 (52)
T ss_dssp             CEEETTTCCEE
T ss_pred             eEEeCCCCeEE
Confidence            35666666544

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.01  E-value=0.16  Score=19.38  Aligned_cols=26  Identities=31%  Similarity=0.616  Sum_probs=19.1

Q ss_pred             CCCCccCCcCcccccCcchhhhhhhh
Q psy3949          62 GEKPYKCLFCDYHCTQSGPLRRHMKI   87 (103)
Q Consensus        62 ~~~~~~c~~c~~~f~~~~~l~~h~~~   87 (103)
                      |+..|.|..|.+.+...+++-+|--+
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHh
Confidence            45567888888888888888777543

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=82.14  E-value=0.11  Score=23.83  Aligned_cols=11  Identities=36%  Similarity=1.250  Sum_probs=5.7

Q ss_pred             CccCCcCcccc
Q psy3949          65 PYKCLFCDYHC   75 (103)
Q Consensus        65 ~~~c~~c~~~f   75 (103)
                      .|.|..|+..|
T Consensus        45 IW~C~kC~~~~   55 (73)
T d1vqoz1          45 IWQCSYCDYKF   55 (73)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEECCCCCCEE
Confidence            45555555544

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=81.22  E-value=0.12  Score=23.66  Aligned_cols=11  Identities=27%  Similarity=0.788  Sum_probs=5.4

Q ss_pred             CccCCcCcccc
Q psy3949          65 PYKCLFCDYHC   75 (103)
Q Consensus        65 ~~~c~~c~~~f   75 (103)
                      .|.|..|++.|
T Consensus        45 IW~C~kC~~~~   55 (73)
T d1jj2y_          45 IWMCGHCGYKI   55 (73)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEECCCCCCEE
Confidence            44555555444