Psyllid ID: psy3960

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MSITFLPLLLLSVGMVKTYQLSKNGTNGLSLKVAPMTTETELNKISCFHAYGIPDATIEPQSVLPDVSDFKVNIYRLFFLRPRFHENEKIRYNWTYIGEELVNGIILEKWRLVTSEGEKVSKYSLWVRYNKASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccEEEEEEccccccccccEEcccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccccccccEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccEEEcccccHHHHHHHHHccccEEEEEEccccccccccccEEcccccccccccccEEEEEEEEcccccccEEEEEcccccccccccEEEEEEccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHEEEcccccccccccHHcccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHcccccccccccccccccccccccccccccEcccccEccccEcHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHcHHHcccccEcccHHHHHHHHHHHccEEEccccccccccccccccHHHEEEcccEEEEcccccHHHHHHHHHHcccEEEEEccccHHHHcccccEEccccccccHccccEEEEEEEEEEccccEEEEEEccEcccccEccEEEEEcccccHHcccccEEccc
Coil and Loop (DISEMBL)
MSITFLPLLLLSVGMVKtyqlskngtnglslkvapmttetelnkiscfhaygipdatiepqsvlpdvsdfkvNIYRLfflrprfhenekirYNWTYIGEELVNGIILEKWRLvtsegekvsKYSLWVRYnkaskdaipvryemkgynslldqsvcgscwsfgttgavegAYYMKHKKLAVLSQQALIdcswgygnngcdggedfRSYQWImkhglptqddygpylgqdayCHIANTTATATMTgfvnvtpnSEDALKLALAkhgpvsvaidasqksFSFYVNGvyydekcnnspdgldHAVLAVGygeldgkpywqvknswstywgnqgYVLMSikdnncgvmtaptyvtm
Flexible Loop (DISEMBL)
MSITFLPLLLLSVGMVKTYqlskngtnglsLKVAPMTTETELNKISCFHAYGIPDATIEPQSVLPDVSDFKVNIYRLFflrprfhenekiryNWTYIGEELVNGIILEKWRLVTSegekvskyslwvrynkaskdaipVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Low Complexity Region (SEG)
MSITFLPLLLLSVGMVKTYQLSKNGTNGLSLKVAPMTTETELNKISCFHAYGIPDATIEPQSVLPDVSDFKVNIYRLFFLRPRFHENEKIRYNWTYIGEELVNGIILEKWRLVTSEGEKVSKYSLWVRYNKASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Disordered region (IsUnstruct)
**ITFLPLLLLSVGMVKTYQLSKNGTNGLSLKVAPMTTETELNKISCFHAYGIPDATIEPQSVLPDVSDFKVNIYRLFFLRPRFHENEKIRYNWTYIGEELVNGIILEKWRLVTSEGEKVSKYSLWVRYNKASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY***
Disordered Region (DISOPRED)
*SITFLPLLLLSVGMVKTYQLSKNGTNGLSLKVAPMTTETELNKISCFHAYGIPDATIE********SDFKVNIYRLFFLRPRFHENEKIRYNWTYIGEELVNGIILEKW***********************KDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Disordered Region (DISEMBL)
MSITFLPLLLLSVGMVKTYQLSKNGTNGLSLKVAPMTTETELNKISCFHAYGIPDATIEPQSVLPDVSDFKVNIYRLFFLRPRFHENEKIRYNWTYIGEELVNGIILEKWRLVTSEGEKVSKYSLWVRYNKASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Disordered Region (DISPRO)
MSITFLPLLLLSVGMVKTYQLSKNGTNGLSLKVAPMTTETELNKISCFHAYGIPDATIEPQSVLPDVSDFKVNIYRLFFLRPRFHENEKIRYNWTYIGEELVNGIILEKWRLVTSEGEK********R*****KDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSITFLPLLLLSVGMVKTYQLSKNGTNGLSLKVAPMTTETELNKISCFHAYGIPDATIEPQSVLPDVSDFKVNIYRLFFLRPRFHENEKIRYNWTYIGEELVNGIILEKWRLVTSEGEKVSKYSLWVRYNKASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q26636	339	Cathepsin L OS=Sarcophaga	N/A	N/A	0.564	0.584	0.490	3e-47
P25784	321	Digestive cysteine protei	N/A	N/A	0.561	0.613	0.482	4e-47
Q54TR1	531	Counting factor associate	yes	N/A	0.623	0.412	0.446	5e-47
P13277	322	Digestive cysteine protei	N/A	N/A	0.618	0.673	0.450	8e-47
P25782	323	Digestive cysteine protei	N/A	N/A	0.760	0.826	0.375	2e-46
Q9GLE3	330	Cathepsin K OS=Sus scrofa	yes	N/A	0.592	0.630	0.467	2e-45
Q3ZKN1	330	Cathepsin K OS=Canis fami	yes	N/A	0.609	0.648	0.454	6e-45
Q5E968	329	Cathepsin K OS=Bos taurus	yes	N/A	0.592	0.632	0.462	6e-45
P43235	329	Cathepsin K OS=Homo sapie	yes	N/A	0.592	0.632	0.462	1e-44
P61277	329	Cathepsin K OS=Macaca mul	yes	N/A	0.592	0.632	0.462	1e-44

>sp|Q26636|CATL_SARPE Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/204 (49%), Positives = 130/204 (63%), Gaps = 6/204 (2%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F +TGA+EG ++ K   L  LS+Q L+DCS  YGNNGC+GG    ++++I
Sbjct: 139 DQGHCGSCWAFSSTGALEGQHFRKAGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYI 198

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
             + G+ T+  Y PY G D  CH    T  AT TGFV++    E+ +K A+A  GPVSVA
Sbjct: 199 KDNGGIDTEKSY-PYEGIDDSCHFNKATIGATDTGFVDIPEGDEEKMKKAVATMGPVSVA 257

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQ 328
           IDAS +SF  Y  GVY + +C+     LDH VL VGYG +  G  YW VKNSW T WG Q
Sbjct: 258 IDASHESFQLYSEGVYNEPECDEQ--NLDHGVLVVGYGTDESGMDYWLVKNSWGTTWGEQ 315

Query: 329 GYVLMSIKDNN-CGVMTAPTYVTM 351
           GY+ M+   NN CG+ TA +Y T+
Sbjct: 316 GYIKMARNQNNQCGIATASSYPTV 339

Important for the overall degradation of proteins in lysosomes. Required for differentiation of imaginal disks.
Sarcophaga peregrina (taxid: 7386)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 1EC: 5

>sp|P25784|CYSP3_HOMAM Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 134/203 (66%), Gaps = 6/203 (2%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F  TGA+EG +++K+ +L  LS+Q L+DCS  YGN+GC GG    ++ +I
Sbjct: 123 DQEQCGSCWAFSATGALEGQHFLKNDELVSLSEQQLVDCSTDYGNDGCGGGWMTSAFDYI 182

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
             + G+ T+  Y PY  +D  C     +  A  TG V V  ++E+AL+ A++  GP+SVA
Sbjct: 183 KDNGGIDTESSY-PYEAEDRSCRFDANSIGAICTGSVEVQ-HTEEALQEAVSGVGPISVA 240

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDAS  SF FY +GVYY++ C  SP  LDH VLAVGYG    K YW VKNSW + WG+ G
Sbjct: 241 IDASHFSFQFYSSGVYYEQNC--SPTFLDHGVLAVGYGTESTKDYWLVKNSWGSSWGDAG 298

Query: 330 YVLMSI-KDNNCGVMTAPTYVTM 351
           Y+ MS  +DNNCG+ + P+Y T+
Sbjct: 299 YIKMSRNRDNNCGIASEPSYPTV 321

Homarus americanus (taxid: 6706)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q54TR1|CFAD_DICDI Counting factor associated protein D OS=Dictyostelium discoideum GN=cfaD PE=1 SV=1

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/226 (44%), Positives = 144/226 (63%), Gaps = 7/226 (3%)

Query: 129 YNKASKDAIPVRYEMKGYNSLL---DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQA 185
           ++  S  +IP   + +  N +    DQ +CGSCW+FG+TG++EG   + + +L  LS+Q 
Sbjct: 301 HDDESLRSIPSTVDWRNQNCVTPVKDQGICGSCWTFGSTGSLEGTNCVTNGELVSLSEQQ 360

Query: 186 LIDCSWGYGNNGCDGGEDFRSYQWIMKHG-LPTQDDYGPYLGQDAYCHIANTTATA-TMT 243
           L+DC+   G+ GC GG    ++Q++M+ G L T+ +Y PYL Q+  C     T +  ++T
Sbjct: 361 LVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESNY-PYLMQNGLCRDRTVTPSGVSIT 419

Query: 244 GFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLA 303
           G+VNVT  SE AL+ A+A  GPV++AIDAS   F +Y++GVY +  C N  D LDH VLA
Sbjct: 420 GYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYYMSGVYNNPACKNGLDDLDHEVLA 479

Query: 304 VGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTY 348
           +GYG   G+ Y+ VKNSWST WG  GYV M+  DNN CGV +  TY
Sbjct: 480 IGYGTYQGQDYFLVKNSWSTNWGMDGYVYMARNDNNLCGVSSQATY 525

Inhibitor that slows proliferation of secreting cells (also known as chalone). Requires aprA for activity.

Dictyostelium discoideum (taxid: 44689)

>sp|P13277|CYSP1_HOMAM Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2

 Score =  187 bits (476), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 140/224 (62%), Gaps = 7/224 (3%)

Query: 132 ASKDAIPVRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCS 190
           A+ ++  V +  KG    + DQ  CGSCW+F TTG +EG +++K  +L  LS+Q L+DC+
Sbjct: 102 AAPESTEVDWRTKGAVTPVKDQGQCGSCWAFSTTGGIEGQHFLKTGRLVSLSEQQLVDCA 161

Query: 191 WG-YGNNGCDGGEDFRSYQWIMKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNV 248
            G Y N GC+GG   R+  ++  +G + T+  Y PY  +D  C   + T  AT TG+V +
Sbjct: 162 GGSYYNQGCNGGWVERAIMYVRDNGGVDTESSY-PYEARDNTCRFNSNTIGATCTGYVGI 220

Query: 249 TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGE 308
              SE ALK A    GP+SVAIDAS +SF  Y  GVYY+  C++S   LDHAVLAVGYG 
Sbjct: 221 AQGSESALKTATRDIGPISVAIDASHRSFQSYYTGVYYEPSCSSSQ--LDHAVLAVGYGS 278

Query: 309 LDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
             G+ +W VKNSW+T WG  GY+ M+  ++NNCG+ T   Y T+
Sbjct: 279 EGGQDFWLVKNSWATSWGESGYIKMARNRNNNCGIATDACYPTV 322

Homarus americanus (taxid: 6706)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/285 (37%), Positives = 159/285 (55%), Gaps = 18/285 (6%)

Query: 79  FLRPRFHENEKI--RYNWTYIGEELVNGIILEKWRLVTSEG----------EKVSKYSLW 126
           + R  F +N+K    +N  Y   E+   + + K+  +T E            + +  S++
Sbjct: 39  YRRVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEEFNAVMKGNIPRRSAPVSVF 98

Query: 127 VRYNKASKDAIPVRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQA 185
               +    A  V +  KG    + DQ  CGSCW+F TTG++EG +++K   L  L++Q 
Sbjct: 99  YPKKETGPQATEVDWRTKGAVTPVKDQGQCGSCWAFSTTGSLEGQHFLKTGSLISLAEQQ 158

Query: 186 LIDCSWGYGNNGCDGGEDFRSYQWI-MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTG 244
           L+DCS  YG  GC+GG    ++ +I   +G+ T+  Y PY  +D  C   + +  AT +G
Sbjct: 159 LVDCSRPYGPQGCNGGWMNDAFDYIKANNGIDTEAAY-PYEARDGSCRFDSNSVAATCSG 217

Query: 245 FVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAV 304
             N+   SE  L+ A+   GP+SV IDA+  SF FY +GVYY+  C  SP  LDHAVLAV
Sbjct: 218 HTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSC--SPSYLDHAVLAV 275

Query: 305 GYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 348
           GYG   G+ +W VKNSW+T WG+ GY+ MS  ++NNCG+ T  +Y
Sbjct: 276 GYGSEGGQDFWLVKNSWATSWGDAGYIKMSRNRNNNCGIATVASY 320

Homarus americanus (taxid: 6706)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9GLE3|CATK_PIG Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/216 (46%), Positives = 133/216 (61%), Gaps = 8/216 (3%)

Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           + Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 120 IDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 177

Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ K+ G+ ++D Y PY+GQD  C    T   A   G+  +   +E AL
Sbjct: 178 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQDENCMYNPTGKAAKCRGYREIPEGNEKAL 236

Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GPVSVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   GK +W 
Sbjct: 237 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCNS--DNLNHAVLAVGYGIQKGKKHWI 294

Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 295 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 330

Closely involved in osteoclastic bone resorption and may participate partially in the disorder of bone remodeling. Displays potent endoprotease activity against fibrinogen at acid pH. May play an important role in extracellular matrix degradation (By similarity). Mediates thyroxine liberation by limited proteolysis of thyroglobulin at neutral pH in vitro.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 3

EC: 8

>sp|Q3ZKN1|CATK_CANFA Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1

 Score =  181 bits (460), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/222 (45%), Positives = 134/222 (60%), Gaps = 8/222 (3%)

Query: 133 SKDAIPVRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW 191
           S+    V Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC  
Sbjct: 114 SRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV- 172

Query: 192 GYGNNGCDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP 250
              N+GC GG    ++Q++ K+ G+ ++D Y PY+GQD  C    T   A   G+  +  
Sbjct: 173 -SENDGCGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQDESCMYNPTGKAAKCRGYREIPE 230

Query: 251 NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELD 310
            +E ALK A+A+ GP+SVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   
Sbjct: 231 GNEKALKRAVARVGPISVAIDASLTSFQFYSKGVYYDENCNS--DNLNHAVLAVGYGIQK 288

Query: 311 GKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           G  +W +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 289 GNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 330

Closely involved in osteoclastic bone resorption and may participate partially in the disorder of bone remodeling. Displays potent endoprotease activity against fibrinogen at acid pH. May play an important role in extracellular matrix degradation.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 3

EC: 8

>sp|Q5E968|CATK_BOVIN Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2

 Score =  181 bits (460), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)

Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 119 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 176

Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ K+ G+ ++D Y PY+GQD  C    T   A   G+  +   +E AL
Sbjct: 177 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQDENCMYNPTGKAAKCRGYREIPEGNEKAL 235

Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GP+SVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   G  +W 
Sbjct: 236 KRAVARVGPISVAIDASLTSFQFYRKGVYYDENCNS--DNLNHAVLAVGYGIQKGNKHWI 293

Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 294 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 329

Closely involved in osteoclastic bone resorption and may participate partially in the disorder of bone remodeling. Displays potent endoprotease activity against fibrinogen at acid pH. May play an important role in extracellular matrix degradation.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 3

EC: 8

>sp|P43235|CATK_HUMAN Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)

Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 119 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 176

Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ K+ G+ ++D Y PY+GQ+  C    T   A   G+  +   +E AL
Sbjct: 177 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 235

Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GPVSVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   G  +W 
Sbjct: 236 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 293

Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 294 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 329

Closely involved in osteoclastic bone resorption and may participate partially in the disorder of bone remodeling. Displays potent endoprotease activity against fibrinogen at acid pH. May play an important role in extracellular matrix degradation.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 3

EC: 8

>sp|P61277|CATK_MACMU Cathepsin K OS=Macaca mulatta GN=CTSK PE=1 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)

Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 119 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 176

Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ K+ G+ ++D Y PY+GQ+  C    T   A   G+  +   +E AL
Sbjct: 177 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 235

Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GPVSVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   G  +W 
Sbjct: 236 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 293

Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 294 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 329

Closely involved in osteoclastic bone resorption and may participate partially in the disorder of bone remodeling. Displays potent endoprotease activity against fibrinogen at acid pH. May play an important role in extracellular matrix degradation.

Macaca mulatta (taxid: 9544)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 3

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
350425511	549	PREDICTED: counting factor associated pr	0.572	0.366	0.787	2e-91
340728972	549	PREDICTED: counting factor associated pr	0.572	0.366	0.777	2e-90
322787487	552	hypothetical protein SINV_11743 [Solenop	0.572	0.364	0.772	4e-90
383860620	549	PREDICTED: counting factor associated pr	0.572	0.366	0.767	5e-90
307202924	484	Digestive cysteine proteinase 1 [Harpegn	0.572	0.415	0.767	1e-89
307180251	555	Cathepsin L [Camponotus floridanus]	0.572	0.362	0.752	2e-89
156554010	553	PREDICTED: counting factor associated pr	0.623	0.396	0.681	6e-87
6448469	552	homologue of Sarcophaga 26,29kDa protein	0.626	0.398	0.687	7e-87
380013206	549	PREDICTED: counting factor associated pr	0.572	0.366	0.727	2e-86
195128649	547	GI11630 [Drosophila mojavensis] gi|19392	0.621	0.398	0.668	6e-84

>gi|350425511|ref|XP_003494144.1| PREDICTED: counting factor associated protein D-like [Bombus impatiens]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/202 (78%), Positives = 175/202 (86%), Gaps = 1/202 (0%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQSVCGSCWSFGTTGAVEGAYYMK+ KL  LSQQALIDCSWGYGNNGCDGGEDFRSYQWI
Sbjct: 348 DQSVCGSCWSFGTTGAVEGAYYMKYGKLVRLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 407

Query: 211 MKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           MKHG LPT+DDYG YLGQD YCHI N T TA +TG+VNVT    +ALK+A+AKHGP+SVA
Sbjct: 408 MKHGGLPTEDDYGGYLGQDGYCHINNATVTAKITGYVNVTSGDANALKVAIAKHGPISVA 467

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDAS K+FSFY +GVYYDE C N+ + LDHAVLAVGYG L+GK YW VKNSWS YWGN G
Sbjct: 468 IDASHKTFSFYSHGVYYDESCGNTEESLDHAVLAVGYGSLNGKDYWLVKNSWSNYWGNDG 527

Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
           Y+LMS + NNCGV+TAPTYVTM
Sbjct: 528 YILMSQEKNNCGVLTAPTYVTM 549

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728972|ref|XP_003402785.1| PREDICTED: counting factor associated protein D-like [Bombus terrestris]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 157/202 (77%), Positives = 175/202 (86%), Gaps = 1/202 (0%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQSVCGSCWSFGTTGAVEGAYYMK+ KL  LSQQALIDCSWGYGNNGCDGGEDFRSYQWI
Sbjct: 348 DQSVCGSCWSFGTTGAVEGAYYMKYGKLVRLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 407

Query: 211 MKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           MKHG LPT+D+YG YLGQD YCH+ N T TA +TG+VNVT    +ALK+A+AKHGP+SVA
Sbjct: 408 MKHGGLPTEDEYGGYLGQDGYCHVNNVTLTAKITGYVNVTSGDANALKVAIAKHGPISVA 467

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDAS K+FSFY +GVYYDE C N+ + LDHAVLAVGYG L+GK YW VKNSWS YWGN G
Sbjct: 468 IDASHKTFSFYSHGVYYDESCGNTEESLDHAVLAVGYGSLNGKDYWLVKNSWSNYWGNDG 527

Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
           Y+LMS + NNCGV+TAPTYVTM
Sbjct: 528 YILMSQEKNNCGVLTAPTYVTM 549

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787487|gb|EFZ13575.1| hypothetical protein SINV_11743 [Solenopsis invicta]

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 156/202 (77%), Positives = 173/202 (85%), Gaps = 1/202 (0%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQSVCGSCWSFGTTGAVEGAYYMKH KL  LSQQALIDCSWG+GNNGCDGGEDFRSYQW+
Sbjct: 351 DQSVCGSCWSFGTTGAVEGAYYMKHNKLVRLSQQALIDCSWGFGNNGCDGGEDFRSYQWM 410

Query: 211 MKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           MKHG LPT++DYG YLGQD YCHI N T TA +TGFVNV P S  ALK+A+AKHGP+SVA
Sbjct: 411 MKHGGLPTEEDYGGYLGQDGYCHINNVTLTANITGFVNVPPRSVQALKIAIAKHGPISVA 470

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDAS K+FSFY +GVYYD  C N+ D LDHAVLAVGYG ++GK YW VKNSWS YWGN G
Sbjct: 471 IDASHKTFSFYSHGVYYDPACGNTEDKLDHAVLAVGYGTMNGKGYWLVKNSWSNYWGNDG 530

Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
           Y+LM+ KD+NCGV+  PTYVTM
Sbjct: 531 YILMAQKDDNCGVLLTPTYVTM 552

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860620|ref|XP_003705787.1| PREDICTED: counting factor associated protein D-like [Megachile rotundata]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 155/202 (76%), Positives = 174/202 (86%), Gaps = 1/202 (0%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQSVCGSCWSFGTTGAVEGAYYMK+ KL  LSQQALIDCSWG+GNNGCDGGEDFRSYQWI
Sbjct: 348 DQSVCGSCWSFGTTGAVEGAYYMKYGKLVRLSQQALIDCSWGFGNNGCDGGEDFRSYQWI 407

Query: 211 MKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           MKHG LP +D+YG YLGQD YCH  N T  A +TGFVNVTP   +ALK+A+AKHGP+SVA
Sbjct: 408 MKHGGLPAEDEYGGYLGQDGYCHANNVTKVAKITGFVNVTPGDPNALKVAIAKHGPISVA 467

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDA+ K+FSFY +GVYYDE C N+ + LDHAVLAVGYG+L+GK YW VKNSWS YWGN G
Sbjct: 468 IDAAHKTFSFYSHGVYYDESCGNTEESLDHAVLAVGYGKLNGKDYWLVKNSWSNYWGNDG 527

Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
           Y+LMS + NNCGV+TAPTYVTM
Sbjct: 528 YILMSQEKNNCGVLTAPTYVTM 549

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202924|gb|EFN82144.1| Digestive cysteine proteinase 1 [Harpegnathos saltator]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/202 (76%), Positives = 174/202 (86%), Gaps = 1/202 (0%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQSVCGSCWSFGTTG +EGAYYMK+ KL  LSQQALIDCSWGYGNNGCDGGEDFR+YQWI
Sbjct: 283 DQSVCGSCWSFGTTGTIEGAYYMKYNKLVRLSQQALIDCSWGYGNNGCDGGEDFRAYQWI 342

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           MKH GLPT++DYG YLGQD YCHI N T TA +TG+VNVTP S  ALK+A+AKHGP+SVA
Sbjct: 343 MKHDGLPTEEDYGGYLGQDGYCHINNVTKTAKITGYVNVTPLSVAALKIAIAKHGPISVA 402

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDAS K+FSFY +GVYYD  C N+ D LDHAVLAVGYG ++GK YW VKNSWS YWGN G
Sbjct: 403 IDASHKTFSFYSHGVYYDPACGNTEDKLDHAVLAVGYGNMNGKDYWLVKNSWSNYWGNDG 462

Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
           Y+LM+ KD+NCGV+ APTYVTM
Sbjct: 463 YILMAQKDDNCGVLLAPTYVTM 484

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180251|gb|EFN68284.1| Cathepsin L [Camponotus floridanus]

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 152/202 (75%), Positives = 174/202 (86%), Gaps = 1/202 (0%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQSVCGSCWSFGTTG +EGAYY+K+ KL  LSQQALIDCSWGYGNNGCDGGEDFRSYQWI
Sbjct: 354 DQSVCGSCWSFGTTGTIEGAYYLKYNKLVRLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 413

Query: 211 MKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           MKHG LPT+DDYG YLGQD +CH+ N T TA + GFVNVTP + DALK+A+AKHGP+SVA
Sbjct: 414 MKHGGLPTEDDYGSYLGQDGFCHVNNVTLTAKIKGFVNVTPRNVDALKIAIAKHGPISVA 473

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDAS K+FSFY +GVYYD  C N+ D LDHAVLAVGYG ++GK YW +KNSWS YWGN G
Sbjct: 474 IDASHKTFSFYSHGVYYDPTCGNTEDTLDHAVLAVGYGTMNGKGYWLIKNSWSNYWGNDG 533

Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
           Y+LM+ +D+NCGV+ APTYVTM
Sbjct: 534 YILMAQQDDNCGVLLAPTYVTM 555

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554010|ref|XP_001605879.1| PREDICTED: counting factor associated protein D-like [Nasonia vitripennis]

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 152/223 (68%), Positives = 181/223 (81%), Gaps = 4/223 (1%)

Query: 131 KASKDAIPVRYEMKGYNSLL---DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALI 187
           +  K  +P  ++ + Y ++    DQSVCGSCWSFGTTGAVEGAY+MK+KKL  LSQQALI
Sbjct: 328 EKEKADVPDSFDWRLYGAVTPVKDQSVCGSCWSFGTTGAVEGAYFMKYKKLVRLSQQALI 387

Query: 188 DCSWGYGNNGCDGGEDFRSYQWIMKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFV 246
           DCSWG+GNNGCDGGEDFRSYQWI+KHG LPT+++YG YLGQD YCHI N T  A + GFV
Sbjct: 388 DCSWGFGNNGCDGGEDFRSYQWIIKHGGLPTEEEYGGYLGQDGYCHIKNVTQIAKLKGFV 447

Query: 247 NVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGY 306
           NV  N+ DA+KLAL KHGP+SVAIDAS K+FSFY NGVYY+  C N+ + LDHAVLAVGY
Sbjct: 448 NVDTNNVDAMKLALFKHGPISVAIDASHKTFSFYSNGVYYEPACGNTENSLDHAVLAVGY 507

Query: 307 GELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 349
           G ++GK +W +KNSWS YWGN GY+LM+ K+NNCGVMTAPTY 
Sbjct: 508 GTINGKGFWLIKNSWSNYWGNDGYILMAQKNNNCGVMTAPTYA 550

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|6448469|dbj|BAA86911.1| homologue of Sarcophaga 26,29kDa proteinase [Periplaneta americana]

 Score =  327 bits (837), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 154/224 (68%), Positives = 178/224 (79%), Gaps = 4/224 (1%)

Query: 132 ASKDAIPVRYEMKGYNSLL---DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALID 188
           A  D IP   + + Y ++    DQSVCGSCWSFGTTG +EGAY++K+  L  LSQQALID
Sbjct: 329 AIMDQIPDDLDWRIYGAVTPVKDQSVCGSCWSFGTTGTIEGAYFLKYGHLVRLSQQALID 388

Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVN 247
           CSWGYGNNGCDGGEDFRSY+W+MKHG +P +D+YG YLGQD YCH+ N T TA +TG+VN
Sbjct: 389 CSWGYGNNGCDGGEDFRSYEWMMKHGGIPLEDEYGGYLGQDGYCHVENVTLTAKITGYVN 448

Query: 248 VTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG 307
           VT    DALK+ALAKHGP+SVAIDAS K+FSFY NG+YYD +C N  D LDHAVL VGYG
Sbjct: 449 VTSGDIDALKVALAKHGPISVAIDASHKTFSFYSNGIYYDPECGNKLDQLDHAVLLVGYG 508

Query: 308 ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 351
            ++G PYW VKNSWS YWGN GY+LMS KDNNCGV T PTYVTM
Sbjct: 509 IINGNPYWLVKNSWSNYWGNDGYILMSPKDNNCGVATDPTYVTM 552

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013206|ref|XP_003690657.1| PREDICTED: counting factor associated protein D-like [Apis florea]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 147/202 (72%), Positives = 172/202 (85%), Gaps = 1/202 (0%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQSVCGSCWSFGTTGAVEGAY+MK+ KL  LSQQALIDCSWG+GNNGCDGGEDFRSYQWI
Sbjct: 348 DQSVCGSCWSFGTTGAVEGAYFMKYGKLVRLSQQALIDCSWGFGNNGCDGGEDFRSYQWI 407

Query: 211 MKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           MKHG LPT+D+YG YLGQD YCH+ N +  A +TG+VNVT    +ALK+A+AKHGP+SVA
Sbjct: 408 MKHGGLPTEDEYGGYLGQDGYCHVNNISMIAKITGYVNVTSGDANALKIAIAKHGPISVA 467

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDAS K+FSFY +G+YY+  C N  + LDHAVLAVGYG+++GK YW +KNSWS YWGN G
Sbjct: 468 IDASHKTFSFYSHGIYYESTCGNIEESLDHAVLAVGYGKINGKDYWLIKNSWSNYWGNDG 527

Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
           Y+LMS + NNCGV+T PTYVTM
Sbjct: 528 YILMSQEKNNCGVLTTPTYVTM 549

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195128649|ref|XP_002008774.1| GI11630 [Drosophila mojavensis] gi|193920383|gb|EDW19250.1| GI11630 [Drosophila mojavensis]

 Score =  317 bits (812), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 149/223 (66%), Positives = 178/223 (79%), Gaps = 5/223 (2%)

Query: 134 KDAIPVRYEMKGYNSL---LDQSVCGSCWSFGTTGAVEGAYYMKHK-KLAVLSQQALIDC 189
           KD IP +Y+ + + ++    DQSVCGSCWSFGT G +EGAY++K+   L  LSQQALIDC
Sbjct: 325 KDEIPSQYDWRLFGAVSPVKDQSVCGSCWSFGTVGHLEGAYFLKNGGNLVRLSQQALIDC 384

Query: 190 SWGYGNNGCDGGEDFRSYQWIMK-HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNV 248
           SWGYGNNGCDGGEDFR YQW+M+  G+PT+++YGPYLGQD YCH+ N T  A + GFVNV
Sbjct: 385 SWGYGNNGCDGGEDFRVYQWMMQVGGVPTEEEYGPYLGQDGYCHVNNVTLVAPIKGFVNV 444

Query: 249 TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGE 308
           T N  +A KLA+ KHGP+SVAIDAS K+FSFY NGVYY+ +C N  DGLDHAVLAVGYG 
Sbjct: 445 TSNDPNAFKLAMLKHGPLSVAIDASPKTFSFYSNGVYYEPECKNDVDGLDHAVLAVGYGT 504

Query: 309 LDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 351
           ++G+ YW VKNSWSTYWGN GY+LMS + NNCGVMT PTYV M
Sbjct: 505 INGEDYWLVKNSWSTYWGNDGYILMSARKNNCGVMTMPTYVEM 547

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
FB|FBgn0250848	549	26-29-p "26-29kD-proteinase" [	0.621	0.397	0.663	5.7e-109
ZFIN|ZDB-GENE-050417-107	546	zgc:110239 "zgc:110239" [Danio	0.572	0.368	0.579	9.7e-88
UNIPROTKB|F1NHB8	329	F1NHB8 "Uncharacterized protei	0.564	0.601	0.618	1.1e-69
UNIPROTKB|F1NT07	317	LOC100857883 "Uncharacterized	0.564	0.624	0.597	1.4e-64
DICTYBASE|DDB_G0281605	531	cfaD "peptidase C1A family pro	0.623	0.412	0.446	3.7e-52
ZFIN|ZDB-GENE-040718-61	334	ctsl.1 "cathepsin L.1" [Danio	0.632	0.664	0.478	5.1e-51
ZFIN|ZDB-GENE-030131-106	337	ctsl1a "cathepsin L, 1 a" [Dan	0.572	0.596	0.495	5.8e-50
ZFIN|ZDB-GENE-041010-76	337	ctsll "cathepsin L, like" [Dan	0.595	0.620	0.454	9.8e-48
DICTYBASE|DDB_G0279799	376	cprB "cysteine proteinase 2" [	0.447	0.417	0.5	4.2e-47
UNIPROTKB|F1NEC8	218	CTSL2 "Uncharacterized protein	0.586	0.944	0.469	5.4e-47

FB|FBgn0250848 26-29-p "26-29kD-proteinase" [Drosophila melanogaster (taxid:7227)]

 Score = 827 (296.2 bits), Expect = 5.7e-109, Sum P(3) = 5.7e-109
 Identities = 148/223 (66%), Positives = 176/223 (78%)

Query:   134 KDAIPVRYEMKGYNSLL---DQSVCGSCWSFGTTGAVEGAYYMKHK-KLAVLSQQALIDC 189
             KD IP +Y+ + Y ++    DQSVCGSCWSFGT G +EGA+++K+   L  LSQQALIDC
Sbjct:   327 KDEIPDQYDWRLYGAVTPVKDQSVCGSCWSFGTIGHLEGAFFLKNGGNLVRLSQQALIDC 386

Query:   190 SWGYGNNGCDGGEDFRSYQWIMKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNV 248
             SW YGNNGCDGGEDFR YQW+++ G +PT+++YGPYLGQD YCH+ N T  A + GFVNV
Sbjct:   387 SWAYGNNGCDGGEDFRVYQWMLQSGGVPTEEEYGPYLGQDGYCHVNNVTLVAPIKGFVNV 446

Query:   249 TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGE 308
             T N  +A KLAL KHGP+SVAIDAS K+FSFY +GVYY+  C N  DGLDHAVLAVGYG 
Sbjct:   447 TSNDPNAFKLALLKHGPLSVAIDASPKTFSFYSHGVYYEPTCKNDVDGLDHAVLAVGYGS 506

Query:   309 LDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 351
             ++G+ YW VKNSWSTYWGN GY+LMS K NNCGVMT PTYV M
Sbjct:   507 INGEDYWLVKNSWSTYWGNDGYILMSAKKNNCGVMTMPTYVEM 549

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-050417-107 zgc:110239 "zgc:110239" [Danio rerio (taxid:7955)]

 Score = 690 (248.0 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
 Identities = 117/202 (57%), Positives = 154/202 (76%)

Query:   151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
             DQ+VCGSCWSF TTG +EGA ++K  +L  LSQQ L+DC+WG+GNNGCDGGE++R+++WI
Sbjct:   344 DQAVCGSCWSFATTGTLEGALFLKTGQLTSLSQQMLVDCTWGFGNNGCDGGEEWRAFEWI 403

Query:   211 MKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
             MKHG + T + YG Y+G +  CH   ++  A +TG+ NVT     ALK A+ K GPV+V+
Sbjct:   404 MKHGGISTAESYGAYMGMNGLCHYDKSSMVAQLTGYTNVTSGDILALKAAIFKFGPVAVS 463

Query:   270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
             IDA+ +SF+FY NGVYY+ +C N  + LDHAVLAVGYG ++ + YW VKNSWS+YWGN G
Sbjct:   464 IDAAHRSFAFYSNGVYYEPECKNGINDLDHAVLAVGYGIMNNESYWLVKNSWSSYWGNDG 523

Query:   330 YVLMSIKDNNCGVMTAPTYVTM 351
             Y+LMS+KDNNCGV T   Y T+
Sbjct:   524 YILMSMKDNNCGVATDAIYATL 545

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1NHB8 F1NHB8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 123/199 (61%), Positives = 150/199 (75%)

Query:   151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
             DQ+VCGSCWSF TTGA+EGA ++K   L  LSQQ LIDCSWG+GN  CDGGE++R+Y+WI
Sbjct:   127 DQAVCGSCWSFATTGAMEGALFLKTGVLTPLSQQVLIDCSWGFGNYACDGGEEWRAYEWI 186

Query:   211 MKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
              KHG + + + YGPYLGQ+ YCH   +   A + G+V V   + +ALK AL KHGPV+V 
Sbjct:   187 KKHGGIASTESYGPYLGQNGYCHYNQSELVAPLAGYVTVESGNAEALKAALFKHGPVAVN 246

Query:   270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
             IDAS KSF+FY NGVY +  C N    LDHAVLAVGYG L GK YW +KNSWSTYWGN G
Sbjct:   247 IDASHKSFTFYANGVYEEPHCGNETSELDHAVLAVGYGVLHGKSYWLIKNSWSTYWGNDG 306

Query:   330 YVLMSIKDNNCGVMTAPTY 348
             Y+LM++KDNNCGV TA ++
Sbjct:   307 YILMAMKDNNCGVATAASF 325

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1NT07 LOC100857883 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 120/201 (59%), Positives = 146/201 (72%)

Query:   151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
             DQ+VCGSCWSF TTGA+EGA ++K   L  LSQQ LIDCSWG GN  CDGGE++R+  WI
Sbjct:   113 DQAVCGSCWSFATTGAMEGALFLKTGVLTPLSQQVLIDCSWGKGNYACDGGEEWRAKGWI 172

Query:   211 MKHG--LPTQDDYG-PYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVS 267
              KHG    T+     P + Q+  CH   +   A +TG+VNVT  +  A+K A+ KHGPV+
Sbjct:   173 KKHGGIASTESPPSFPLVLQNGLCHYNQSEMLAKITGYVNVTSGNITAVKTAIYKHGPVA 232

Query:   268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
             V+IDAS K+FSFY NG+YY+ KC N P  LDHAVLAVGYG L G+ YW +KNSWSTYWGN
Sbjct:   233 VSIDASHKTFSFYSNGIYYEPKCANKPGQLDHAVLAVGYGVLQGETYWLIKNSWSTYWGN 292

Query:   328 QGYVLMSIKDNNCGVMTAPTY 348
              GY+LM++KDNNCGV T  TY
Sbjct:   293 DGYILMAMKDNNCGVATEATY 313

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

DICTYBASE|DDB_G0281605 cfaD "peptidase C1A family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 503 (182.1 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
 Identities = 101/226 (44%), Positives = 144/226 (63%)

Query:   129 YNKASKDAIPVRYEMKGYNSLL---DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQA 185
             ++  S  +IP   + +  N +    DQ +CGSCW+FG+TG++EG   + + +L  LS+Q 
Sbjct:   301 HDDESLRSIPSTVDWRNQNCVTPVKDQGICGSCWTFGSTGSLEGTNCVTNGELVSLSEQQ 360

Query:   186 LIDCSWGYGNNGCDGGEDFRSYQWIMKHG-LPTQDDYGPYLGQDAYCHIANTTATA-TMT 243
             L+DC+   G+ GC GG    ++Q++M+ G L T+ +Y PYL Q+  C     T +  ++T
Sbjct:   361 LVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESNY-PYLMQNGLCRDRTVTPSGVSIT 419

Query:   244 GFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLA 303
             G+VNVT  SE AL+ A+A  GPV++AIDAS   F +Y++GVY +  C N  D LDH VLA
Sbjct:   420 GYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYYMSGVYNNPACKNGLDDLDHEVLA 479

Query:   304 VGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTY 348
             +GYG   G+ Y+ VKNSWST WG  GYV M+  DNN CGV +  TY
Sbjct:   480 IGYGTYQGQDYFLVKNSWSTNWGMDGYVYMARNDNNLCGVSSQATY 525

GO:0005615 "extracellular space" evidence=IDA

GO:0008234 "cysteine-type peptidase activity" evidence=IDA

GO:0006508 "proteolysis" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0031288 "sorocarp morphogenesis" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IGI;IDA

GO:0005576 "extracellular region" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040718-61 ctsl.1 "cathepsin L.1" [Danio rerio (taxid:7955)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 109/228 (47%), Positives = 141/228 (61%)

Query:   124 SLWVRYNKASKDAIPVRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLS 182
             S + R  KA+     V +  KGY   + DQ  CGSCW+F  TG++EG  + K  KL  LS
Sbjct:   107 STFFRLRKAAVVPDTVDWRDKGYVTDIKDQKQCGSCWAFSATGSLEGQTFRKTGKLVSLS 166

Query:   183 QQALIDCSWGYGNNGCDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATAT 241
             +Q L+DCS  YGN GCDGG   +++Q+I  + GL T+D Y PY  QD  C    +T  A+
Sbjct:   167 EQQLVDCSGSYGNYGCDGGLMDQAFQYIEANKGLDTEDSY-PYEAQDGECRFNPSTVGAS 225

Query:   242 MTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAV 301
              TG+V++    E AL+ A+A  GP+SVAIDA   SF  Y +GVY +  C++S   LDH V
Sbjct:   226 CTGYVDIASGDESALQEAVATIGPISVAIDAGHSSFQLYSSGVYNEPDCSSSE--LDHGV 283

Query:   302 LAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 348
             LAVGYG  +G  YW VKNSW   WG QGY+LMS  K N CG+ TA +Y
Sbjct:   284 LAVGYGSSNGDDYWIVKNSWGLDWGVQGYILMSRNKSNQCGIATAASY 331

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-106 ctsl1a "cathepsin L, 1 a" [Danio rerio (taxid:7955)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 106/214 (49%), Positives = 143/214 (66%)

Query:   144 KGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGE 202
             KGY   + DQ  CGSCW+F TTGA+EG  + K  KL  LS+Q L+DCS   GN GC+GG 
Sbjct:   125 KGYVTPVKDQGECGSCWAFSTTGALEGQMFRKTGKLVSLSEQNLVDCSRPEGNEGCNGGL 184

Query:   203 DFRSYQWIM-KHGLPTQDDYGPYLGQDAY-CHIANTTATATMTGFVNVTPNSEDALKLAL 260
               +++Q++  ++GL +++ Y PYLG D   CH     + A  TGFV++    E AL  A+
Sbjct:   185 MDQAFQYVKDQNGLDSEESY-PYLGTDDQPCHFDPKNSAANDTGFVDIPSGKERALMKAI 243

Query:   261 AKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGKPYWQ 316
             A  GPVSVAIDA  +SF FY +G+YY+++C  S + LDH VLAVGYG    ++DGK YW 
Sbjct:   244 AAVGPVSVAIDAGHESFQFYQSGIYYEKEC--SSEELDHGVLAVGYGFEGEDVDGKKYWI 301

Query:   317 VKNSWSTYWGNQGYVLMSIKD--NNCGVMTAPTY 348
             VKNSWS  WG++GY+ M+ KD  N+CG+ TA +Y
Sbjct:   302 VKNSWSENWGDKGYIYMA-KDRHNHCGIATAASY 334

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

ZFIN|ZDB-GENE-041010-76 ctsll "cathepsin L, like" [Danio rerio (taxid:7955)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 101/222 (45%), Positives = 143/222 (64%)

Query:   139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
             + +  KGY   + DQ  CGSCW+F +TGA+EG  + K  KL  LS+Q L+DCS   GNNG
Sbjct:   120 IDWRQKGYVTPIKDQKRCGSCWAFSSTGALEGQVFRKTGKLVSLSEQNLMDCSRPQGNNG 179

Query:   198 CDGGEDFRSYQWIM-KHGLPTQDDYGPYLGQDAY-CHIANTTATATMTGFVNVTPNSEDA 255
             CDGG   +++Q++   +GL +++ Y PYL  D   CH     + A +TGFV++    E A
Sbjct:   180 CDGGLMDQAFQYVQDNNGLDSEESY-PYLATDDQPCHYDPRYSAANVTGFVDIPSGKEHA 238

Query:   256 LKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDG 311
             L  A+A  GPV+VAIDA  +SF FY +G+YY++ C  S + LDH VL VGYG    ++ G
Sbjct:   239 LMKAVAAVGPVAVAIDAGHESFQFYQSGIYYEKAC--STEELDHGVLVVGYGYEGVDVAG 296

Query:   312 KPYWQVKNSWSTYWGNQGYVLMSIKD--NNCGVMTAPTYVTM 351
             + YW VKNSW+  WG++GY+ M+ KD  N+CG+ T+ +Y  M
Sbjct:   297 RRYWIVKNSWTDRWGDKGYIYMA-KDLKNHCGIATSASYPLM 337

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

DICTYBASE|DDB_G0279799 cprB "cysteine proteinase 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 390 (142.3 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
 Identities = 82/164 (50%), Positives = 107/164 (65%)

Query:   151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
             DQ  CGSCWSF TTG+ EGA+ +K KKL  LS+Q L+DCS    N GCDGG    ++ +I
Sbjct:   140 DQGQCGSCWSFSTTGSTEGAHALKTKKLVSLSEQNLVDCSGPEENFGCDGGLMNNAFDYI 199

Query:   211 MKH-GLPTQDDYGPYLGQD-AYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
             +K+ G+ T+  Y PY  +  + C    +   AT+ G+VN+T  SE +L+   A+HGPVSV
Sbjct:   200 IKNKGIDTESSY-PYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENG-AQHGPVSV 257

Query:   269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGK 312
             AIDAS  SF  Y +G+YY+ KC  SP  LDH VL VGYG + GK
Sbjct:   258 AIDASHNSFQLYTSGIYYEPKC--SPTELDHGVLVVGYG-VQGK 298

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

UNIPROTKB|F1NEC8 CTSL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 101/215 (46%), Positives = 135/215 (62%)

Query:   139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
             V +  KGY   + DQ  CGSCW+F TTGA+EG ++ K  KL  LS+Q L+DCS   GN G
Sbjct:     5 VDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRKTGKLVSLSEQNLVDCSRPEGNQG 64

Query:   198 CDGGEDFRSYQWIMKHG-LPTQDDYGPYLGQDAY-CHIANTTATATMTGFVNVTPNSEDA 255
             C+GG   +++Q++  +G + +++ Y PY  +D   C        A  TGFV++    E A
Sbjct:    65 CNGGLMDQAFQYVQDNGGIDSEESY-PYTAKDDEDCRYKAEYNAANDTGFVDIPQGHERA 123

Query:   256 LKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYW 315
             L  A+A  GPVSVAIDA   SF FY +G+YY+  C  S + LDH VL VGYG  DGK YW
Sbjct:   124 LMKAVASVGPVSVAIDAGHSSFQFYQSGIYYEPDC--SSEDLDHGVLVVGYGFEDGKKYW 181

Query:   316 QVKNSWSTYWGNQGYVLMSIKD--NNCGVMTAPTY 348
              VKNSW   WG++GY+ M+ KD  N+CG+ TA +Y
Sbjct:   182 IVKNSWGEKWGDKGYIYMA-KDRKNHCGIATAASY 215

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ZKN1	CATK_CANFA	3, ., 4, ., 2, 2, ., 3, 8	0.4549	0.6096	0.6484	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	351
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	1e-85
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	2e-84
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	7e-54
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	4e-33
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	2e-32
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	2e-31
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	5e-31
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	3e-29
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	3e-29
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	9e-27
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	2e-11
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	1e-09
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	2e-08
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	2e-07

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score =  257 bits (658), Expect = 1e-85
 Identities = 98/199 (49%), Positives = 128/199 (64%), Gaps = 5/199 (2%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F T GA+EGAY +K  KL  LS+Q L+DCS   GNNGC+GG    +++++
Sbjct: 17  DQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYV 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
              GL ++ DY PY G+D  C   ++   A +TG+ NV P  E+ALK ALA +GPVSVAI
Sbjct: 76  KNGGLASESDY-PYTGKDGTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAI 134

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DAS  SF FY  G+Y    C  S   L+HAVL VGYG  +G  YW VKNSW T WG +GY
Sbjct: 135 DASS-SFQFYKGGIYSGPCC--SNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGY 191

Query: 331 VLMSIKDNNCGVMTAPTYV 349
           + ++   N CG+ +  +Y 
Sbjct: 192 IRIARGSNLCGIASYASYP 210

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  254 bits (650), Expect = 2e-84
 Identities = 93/202 (46%), Positives = 123/202 (60%), Gaps = 8/202 (3%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F   GA+EG Y +K  KL  LS+Q L+DC  G  NNGC+GG    ++++I
Sbjct: 18  DQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQQLVDCDTG--NNGCNGGLPDNAFEYI 75

Query: 211 MK-HGLPTQDDYGPYLGQDAYCHI-ANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
            K  G+ T+ DY PY   D  C    + +  A + G+ +V  N E+AL+ ALAK+GPVSV
Sbjct: 76  KKNGGIVTESDY-PYTAHDGTCKFKKSNSKYAKIKGYGDVPYNDEEALQAALAKNGPVSV 134

Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
           AIDA +  F  Y +GVY   +C+     LDHAVL VGYG  +G PYW VKNSW T WG  
Sbjct: 135 AIDAYEDDFQLYKSGVYKHTECSGE---LDHAVLIVGYGTENGVPYWIVKNSWGTDWGEN 191

Query: 329 GYVLMSIKDNNCGVMTAPTYVT 350
           GY  ++   N CG+ +  +Y  
Sbjct: 192 GYFRIARGVNECGIASEASYPI 213

Length = 213

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score =  174 bits (444), Expect = 7e-54
 Identities = 83/211 (39%), Positives = 104/211 (49%), Gaps = 51/211 (24%)

Query: 144 KGYNSL-LDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGE 202
           KG  +   DQ  CGSCW+F  TGA+EG Y +K  KL  LS+Q L+DCS G GN GC+GG 
Sbjct: 10  KGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSGG-GNCGCNGGL 68

Query: 203 DFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALA 261
              ++++I K+ GL T+  Y PY G                                   
Sbjct: 69  PDNAFEYIKKNGGLETESCY-PYTG----------------------------------- 92

Query: 262 KHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGE--LDGKPYWQVKN 319
                SVAIDAS   F FY +G+Y    C      LDHAVL VGYG    +GK YW VKN
Sbjct: 93  -----SVAIDAS--DFQFYKSGIYDHPGC--GSGTLDHAVLIVGYGTEVENGKDYWIVKN 143

Query: 320 SWSTYWGNQGYVLMSI-KDNNCGVMTAPTYV 349
           SW T WG  GY  ++  K+N CG+  +    
Sbjct: 144 SWGTDWGENGYFRIARGKNNECGIEASVASY 174

Length = 175

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score =  125 bits (315), Expect = 4e-33
 Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 26/232 (11%)

Query: 129 YNKASKD--AIP--VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQ 183
           Y KA  D  A+P  V +  KG    + +Q  CGSCW+F   G +E  + +   KL  LS+
Sbjct: 116 YRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSE 175

Query: 184 QALIDCSWGYGNNGCDGGEDFRSYQWIMKH---GLPTQDDYGPYL---GQDAYCHIANTT 237
           Q L+ C   + +NGC GG   ++++W++++    + T+  Y PY+   G    C  ++  
Sbjct: 176 QQLVSCD--HVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSY-PYVSGNGDVPECSNSSEL 232

Query: 238 AT-ATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDG 296
           A  A + G+V++  +SE  +   LAK+GP+S+A+DAS  SF  Y +GV        S  G
Sbjct: 233 APGARIDGYVSM-ESSERVMAAWLAKNGPISIAVDAS--SFMSYHSGVL------TSCIG 283

Query: 297 --LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAP 346
             L+H VL VGY      PYW +KNSW   WG +GYV +++  N C +   P
Sbjct: 284 EQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYP 335

Length = 348

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score =  120 bits (303), Expect = 2e-32
 Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 15/201 (7%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAV--LSQQALIDCSWGY---GNNGCDGGEDFR 205
           +Q   GSCW+F +  A+E AY +K  +     LS Q L  C+       N  CDGG    
Sbjct: 14  NQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLS 73

Query: 206 SYQWIMK-HGLPTQDDYGPYLGQD----AYCHIANTTATATMTGFVNVTPNSEDALKLAL 260
           +   ++   G+P ++DY PY  +          A   A   +  +  V  N+ + +K AL
Sbjct: 74  ALLKLVALKGIPPEEDY-PYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEAL 132

Query: 261 AKHGPVSVAIDASQKSFSFYVNGVYYDEK--CNNSPDGLDHAVLAVGYG--ELDGKPYWQ 316
           AK GPV    D            +Y +         D   HAV+ VGY    ++GK  + 
Sbjct: 133 AKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFI 192

Query: 317 VKNSWSTYWGNQGYVLMSIKD 337
           VKNSW T WG+ GY  +S +D
Sbjct: 193 VKNSWGTDWGDNGYGRISYED 213

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score =  122 bits (309), Expect = 2e-31
 Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 20/201 (9%)

Query: 151 DQSV-CGSCWSFGTTGAVEGAYYMKHKKLAV-LSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           DQ + CGSCW+F + G+VE   Y  ++  +V LS+Q L++C     + GC GG    + +
Sbjct: 251 DQGLNCGSCWAFSSVGSVES-LYKIYRDKSVDLSEQELVNCD--TKSQGCSGGYPDTALE 307

Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
           ++   GL +  D  PYL +D  C +++T      +  V      +D L  +L    P  V
Sbjct: 308 YVKNKGLSSSSDV-PYLAKDGKCVVSSTKKVYIDSYLVA---KGKDVLNKSLVI-SPTVV 362

Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAV--GYGELDGKPYWQVKNSWSTYWG 326
            I  S +    Y +GV Y+ +C      L+HAVL V  GY E   K YW +KNSW T WG
Sbjct: 363 YIAVS-RELLKYKSGV-YNGECG---KSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWG 417

Query: 327 NQGYVLM---SIKDNNCGVMT 344
             GY+ +   +   + CG++T
Sbjct: 418 ENGYMRLERTNEGTDKCGILT 438

Length = 448

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score =  122 bits (307), Expect = 5e-31
 Identities = 74/214 (34%), Positives = 113/214 (52%), Gaps = 25/214 (11%)

Query: 142 EMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGG 201
              G   + DQ  CGSCW+F T G VE  Y ++  +L  LS+Q L+DCS  + NNGC GG
Sbjct: 274 LHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCS--FKNNGCYGG 331

Query: 202 EDFRSYQWIMK-HGLPTQDDYGPYLGQDA-YCHIANTTATATMTGFVNVTPNSEDALKLA 259
               +++ +++  GL ++DDY PY+      C+I        +  +V++    ED  K A
Sbjct: 332 LIPNAFEDMIELGGLCSEDDY-PYVSDTPELCNIDRCKEKYKIKSYVSI---PEDKFKEA 387

Query: 260 LAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG------ELDGKP 313
           +   GP+SV+I  S   F+FY  G+ +D +C   P   +HAV+ VGYG          K 
Sbjct: 388 IRFLGPISVSIAVSD-DFAFYKGGI-FDGECGEEP---NHAVILVGYGMEEIYNSDTKKM 442

Query: 314 ----YWQVKNSWSTYWGNQGYVLMSIKDNNCGVM 343
               Y+ +KNSW   WG +G+  + I+ +  G+M
Sbjct: 443 EKRYYYIIKNSWGESWGEKGF--IRIETDENGLM 474

Length = 489

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score =  112 bits (282), Expect = 3e-29
 Identities = 56/220 (25%), Positives = 83/220 (37%), Gaps = 39/220 (17%)

Query: 150 LDQSVCGSCWSFGTTGAV--------EGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGG 201
            DQ  CGSCW+F    A          G      K+  +LS Q L+ C      +GC+GG
Sbjct: 20  RDQGNCGSCWAFSAVEAFSDRLCIQSNG------KENVLLSAQDLLSCC-SGCGDGCNGG 72

Query: 202 EDFRSYQWIMKHGLPT------QDDYGPYLGQDAYCHIANTTATATMTGFVNVT------ 249
               +++++   G+ T            +  +           T         T      
Sbjct: 73  YPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKH 132

Query: 250 --------PNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAV 301
                   P+ E  +   +  +GPV  A    +  F +Y +GVY  +  +    G  HAV
Sbjct: 133 KGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYE-DFLYYKSGVY--QHTSGKQLGG-HAV 188

Query: 302 LAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCG 341
             +G+G  +G PYW   NSW T WG  GY  +    N CG
Sbjct: 189 KIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECG 228

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score =  112 bits (282), Expect = 3e-29
 Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 25/193 (12%)

Query: 155 CGSCWSFGTTGAVEGAYYMKHK---KLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM 211
           CGSCW+ G+T A+     +  K       LS Q +IDC+   G   C GG+    Y++  
Sbjct: 28  CGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCA---GGGSCHGGDPGGVYEYAH 84

Query: 212 KHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPN-------------SEDALKL 258
           KHG+P  +   PY  +D  C+  N   T    G      N               D +  
Sbjct: 85  KHGIP-DETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVSGRDKMMA 143

Query: 259 ALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYWQV 317
            +   GP+S  I A++   + Y  GVY +   +   +   H +   G+G + +G  YW V
Sbjct: 144 EIYARGPISCGIMATEALEN-YTGGVYKEYVQDPLIN---HIISVAGWGVDENGVEYWIV 199

Query: 318 KNSWSTYWGNQGY 330
           +NSW   WG +G+
Sbjct: 200 RNSWGEPWGERGW 212

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score =  105 bits (265), Expect = 9e-27
 Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 32/226 (14%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLA------VLSQQALIDCSWGYGNNGCDGGEDF 204
           +Q  CGSC++F +  A+E    +   K        +LS Q ++ CS  Y + GCDGG  F
Sbjct: 22  NQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCS-QY-SQGCDGGFPF 79

Query: 205 RSYQWIMKHGLPTQDDYGPYLGQDAYCHIAN--------TTATATMTGFVNVTPNSEDAL 256
              ++    G+ T+D +      D  C  A+         +    + G    T  +ED +
Sbjct: 80  LVGKFAEDFGIVTEDYFPYTADDDRPC-KASPSECRRYYFSDYNYVGGCYGCT--NEDEM 136

Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVY----YDEKCNNSPDGL------DHAVLAVGY 306
           K  + ++GP+ VA +     F FY  GVY     DE  +   D        +HAVL VG+
Sbjct: 137 KWEIYRNGPIVVAFEVYS-DFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGW 195

Query: 307 GE--LDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 350
           GE  + G+ YW VKNSW + WG +GY  +    N CG+ +   +  
Sbjct: 196 GEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAY 241

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 64.6 bits (157), Expect = 2e-11
 Identities = 58/277 (20%), Positives = 100/277 (36%), Gaps = 82/277 (29%)

Query: 151 DQSVCGSCWSFGTTGAVE-----GAYYMKHKKLA-----VLSQQALIDCSWGYGNNGCDG 200
           +Q +CGSC+      A +            KK       +LS Q ++ CS  + + GC+G
Sbjct: 402 NQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCS--FYDQGCNG 459

Query: 201 GEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP---------- 250
           G  +   +     G+P  D   PY   +  C      +  +M G  N+            
Sbjct: 460 GFPYLVSKMAKLQGIP-LDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSET 518

Query: 251 ------------------------------------NSEDALKLALAKHGPVSVAIDASQ 274
                                               N E  +   + ++GP+  + +AS 
Sbjct: 519 QSDMHADFEAPISSEPARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASP 578

Query: 275 KSFSFYVNGVYYDE------KCNNSP------------DGLDHAVLAVGYGE--LDGKP- 313
             +  Y +GVYY E      +C                + ++HA++ VG+GE  ++GK  
Sbjct: 579 DFYD-YADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLY 637

Query: 314 -YWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 349
            YW  +NSW   WG +GY  +    N  G+ +   ++
Sbjct: 638 KYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFI 674

Length = 693

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 50/233 (21%), Positives = 75/233 (32%), Gaps = 40/233 (17%)

Query: 140 RYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYY---------MKHKKLAVLSQQALIDCS 190
           R +    + + DQ   GSCW+F TT ++E                K L  +         
Sbjct: 105 RRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPESAWDFSENNMKNLLGVP------YE 158

Query: 191 WGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMT--GFVNV 248
            G+     DGG    S  ++ +   P  +   PY     +    N   T  +     +  
Sbjct: 159 KGFDYTSNDGGNADMSAAYLTEWSGPVYETDDPYSENSYFSP-TNLPVTKHVQEAQIIPS 217

Query: 249 TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKC-----NNSPDGLDHAVLA 303
                D   +        +V       S S Y++       C      +S +   HAVL 
Sbjct: 218 RKKYLDNGNIKAMFGFYGAV-------SSSMYIDATNSLGICIPYPYVDSGENWGHAVLI 270

Query: 304 VGYGEL----------DGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAP 346
           VGY +            G   + +KNSW T WG  GY  +S      G   A 
Sbjct: 271 VGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALNGDAEAL 323

Length = 372

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 61/217 (28%), Positives = 84/217 (38%), Gaps = 43/217 (19%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY-QW 209
           DQ  C   W F +   +E    MK  +   +S   + +CS G   + CD G +   + Q 
Sbjct: 549 DQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQI 608

Query: 210 IMKHG-LPTQDDYGPY----LGQDAYC-----HIANTTATATMTGFVNVTPNSEDA---- 255
           I  +G LP   +Y  Y    +G+D  C     H  N      +       PNS D     
Sbjct: 609 IEDNGFLPADSNY-LYNYTKVGED--CPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYR 665

Query: 256 -----------------LKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLD 298
                            +K  +   G V   I A +    +  NG      C +  D  D
Sbjct: 666 AYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKA-ENVLGYEFNGKKVQNLCGD--DTAD 722

Query: 299 HAVLAVGYG-----ELDGKPYWQVKNSWSTYWGNQGY 330
           HAV  VGYG     E + K YW V+NSW  YWG++GY
Sbjct: 723 HAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGY 759

Length = 1004

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 49/229 (21%), Positives = 82/229 (35%), Gaps = 41/229 (17%)

Query: 155 CGSCWSFGTTGAVEGAYYM----KHKKLA---VLSQQALIDCSWGYGNNGCDGGEDFRSY 207
           C S +      A+  A  M    +   L     LS + ++DCS  YG  GC GG      
Sbjct: 232 CNSSYVEAALAAMM-ARVMVASNRTDPLGQQTFLSARHVLDCS-QYGQ-GCAGGFPEEVG 288

Query: 208 QWIMKHGLPTQDDYG-PYLGQDAYCHIANTTATATMTGFVNVTP--------NSEDALKL 258
           ++    G+ T D Y  PY   D       T   +    F N  P           D +  
Sbjct: 289 KFAETFGILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIW 348

Query: 259 ALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDG-----------------LDHAV 301
            + +HGPV  ++ A+   ++   +    ++    S D                  ++H V
Sbjct: 349 EIYRHGPVPASVYANSDWYN--CDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTV 406

Query: 302 LAVGYGELD-GKPYWQVKNSWSTY--WGNQGYVLMSIKDNNCGVMTAPT 347
           L +G+G  + G  YW V + W +   W + G   ++   N   + +   
Sbjct: 407 LIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVV 455

Length = 548

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
KOG1542|consensus	372		100.0
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	100.0
PTZ00203	348	cathepsin L protease; Provisional	100.0
KOG1543|consensus	325		100.0
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	100.0
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	100.0
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	100.0
PF00112	219	Peptidase_C1: Papain family cysteine protease This	100.0
PTZ00021	489	falcipain-2; Provisional	100.0
PTZ00200	448	cysteine proteinase; Provisional	100.0
PTZ00049	693	cathepsin C-like protein; Provisional	100.0
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	100.0
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	100.0
smart00645	174	Pept_C1 Papain family cysteine protease.	100.0
PTZ00462	1004	Serine-repeat antigen protein; Provisional	100.0
KOG1544|consensus	470		100.0
COG4870	372	Cysteine protease [Posttranslational modification,	99.94
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.91
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	99.73
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	99.18
KOG4128|consensus	457		97.7
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	97.11
PF05543	175	Peptidase_C47: Staphopain peptidase C47; InterPro:	96.27
PF14399	317	Transpep_BrtH: NlpC/p60-like transpeptidase	90.57
COG4990	195	Uncharacterized protein conserved in bacteria [Fun	90.47
PF09778	212	Guanylate_cyc_2: Guanylylate cyclase; InterPro: IP	90.45
PF12385	166	Peptidase_C70: Papain-like cysteine protease AvrRp	90.16
cd00044	315	CysPc Calpains, domains IIa, IIb; calcium-dependen	81.42

>KOG1542|consensus

Probab=100.00  E-value=4.6e-60  Score=443.40  Aligned_cols=246  Identities=35%  Similarity=0.669  Sum_probs=207.9

Q ss_pred             ccceeecCeeccceeeccccCccc-ceeEEEEEccC-CCCCCcCcceeecC--CC-ccccCCccCchhhhhhHHHHHHHH
Q psy3960          97 IGEELVNGIILEKWRLVTSEGEKV-SKYSLWVRYNK-ASKDAIPVRYEMKG--YN-SLLDQSVCGSCWSFGTTGAVEGAY  171 (351)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~plP~~~d~r~--~~-~v~dQg~cGSCWAfA~~~alE~~~  171 (351)
                      .|-+.|.|++.++|+..+...... ..........+ .+..++|.+||||.  .+ +|+|||+||||||||+++++|++.
T Consensus       115 yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~~~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~  194 (372)
T KOG1542|consen  115 YGVTQFSDLTEEEFKKIYLGVKRRGSKLPGDAAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAW  194 (372)
T ss_pred             cCccchhhcCHHHHHHHhhccccccccCccccccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHH
Confidence            345678888888888777432221 11111111111 23455777777664  33 889999999999999999999999


Q ss_pred             HHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc-CCCCCCCCCCCCCCCC-ccccCCCCceeeEeeEEEec
Q psy3960         172 YMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDA-YCHIANTTATATMTGFVNVT  249 (351)
Q Consensus       172 ~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~-Gi~~e~~y~PY~~~~~-~C~~~~~~~~~~i~~y~~v~  249 (351)
                      ++++|++++||||+|+||..  .++||+||.+..||+|+++. |+.+|++| ||++..+ .|+.........|.+|..++
T Consensus       195 ~i~~g~LvsLSEQeLvDCD~--~d~gC~GGl~~nA~~~~~~~gGL~~E~dY-PY~g~~~~~C~~~~~~~~v~I~~f~~l~  271 (372)
T KOG1542|consen  195 AIATGKLVSLSEQELVDCDS--CDNGCNGGLMDNAFKYIKKAGGLEKEKDY-PYTGKKGNQCHFDKSKIVVSIKDFSMLS  271 (372)
T ss_pred             HhhcCcccccchhhhhcccC--cCCcCCCCChhHHHHHHHHhCCccccccC-CccccCCCccccchhhceEEEeccEecC
Confidence            99999999999999999984  78999999999999996666 89999999 9999988 89999999999999999995


Q ss_pred             CCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEec--CCCCCCCCCCCeEEEEEEEeeeC-CeeEEEEEcCCCCCCC
Q psy3960         250 PNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYD--EKCNNSPDGLDHAVLAVGYGELD-GKPYWQVKNSWSTYWG  326 (351)
Q Consensus       250 ~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~--~~~~~~~~~~~HaV~iVGyg~~~-g~~ywivkNSWG~~WG  326 (351)
                      . |+++|...|.++|||+|+|++.  .+++|.+||+.+  ..|+..  .++|+|+|||||... .++|||||||||++||
T Consensus       272 ~-nE~~ia~wLv~~GPi~vgiNa~--~mQ~YrgGV~~P~~~~Cs~~--~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WG  346 (372)
T KOG1542|consen  272 N-NEDQIAAWLVTFGPLSVGINAK--PMQFYRGGVSCPSKYICSPK--LLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWG  346 (372)
T ss_pred             C-CHHHHHHHHHhcCCeEEEEchH--HHHHhcccccCCCcccCCcc--ccCceEEEEeecCCCCCCceEEEECCcccccc
Confidence            5 9999999999999999999965  899999999987  578654  599999999999987 8999999999999999


Q ss_pred             CCcEEEEEecCCeeeecCCcEEee
Q psy3960         327 NQGYVLMSIKDNNCGVMTAPTYVT  350 (351)
Q Consensus       327 ~~GY~~Is~~~n~cgi~~~~~~~~  350 (351)
                      ++||+|+.||.|.|||++.++-+.
T Consensus       347 E~GY~~l~RG~N~CGi~~mvss~~  370 (372)
T KOG1542|consen  347 EKGYYKLCRGSNACGIADMVSSAA  370 (372)
T ss_pred             ccceEEEeccccccccccchhhhh
Confidence            999999999999999999987553

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=100.00  E-value=4.9e-55  Score=396.28  Aligned_cols=207  Identities=48%  Similarity=0.927  Sum_probs=189.9

Q ss_pred             CcceeecCC---CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcC
Q psy3960         138 PVRYEMKGY---NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHG  214 (351)
Q Consensus       138 P~~~d~r~~---~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~G  214 (351)
                      |.+||+|..   .+|+||+.||+|||||++++||++++++++...+||+|+|++|... .+.+|+||....|++++.++|
T Consensus         1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~~~~G   79 (210)
T cd02248           1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYVKNGG   79 (210)
T ss_pred             CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHHHHCC
Confidence            556777764   4899999999999999999999999999998899999999999864 578999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCC
Q psy3960         215 LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSP  294 (351)
Q Consensus       215 i~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~  294 (351)
                      +++|++| ||.+....|+.......+++++|..+...++++||++|+++|||++++.+. ++|..|++|||..+.|..  
T Consensus        80 i~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~--  155 (210)
T cd02248          80 LASESDY-PYTGKDGTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSN--  155 (210)
T ss_pred             cCccccC-CccCCCCCccCCCCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCC--
Confidence            9999999 999988899887777889999999998877999999999999999999998 799999999998877642  


Q ss_pred             CCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEe
Q psy3960         295 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV  349 (351)
Q Consensus       295 ~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~  349 (351)
                      ..++|||+|||||++.+.+|||||||||+.||++||+||++++|.|||++++.||
T Consensus       156 ~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~  210 (210)
T cd02248         156 TNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP  210 (210)
T ss_pred             CcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence            3689999999999998899999999999999999999999999999999998886

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>PTZ00203 cathepsin L protease; Provisional

Probab=100.00  E-value=7e-55  Score=423.36  Aligned_cols=245  Identities=32%  Similarity=0.648  Sum_probs=196.6

Q ss_pred             cccceeecCeeccceeeccccCc------ccceeEEEEEccCCCCCCcCcceeec--CCC-ccccCCccCchhhhhhHHH
Q psy3960          96 YIGEELVNGIILEKWRLVTSEGE------KVSKYSLWVRYNKASKDAIPVRYEMK--GYN-SLLDQSVCGSCWSFGTTGA  166 (351)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~plP~~~d~r--~~~-~v~dQg~cGSCWAfA~~~a  166 (351)
                      .+|++.|.|++.++|...+....      +......+.. .......+|.+||||  +.+ ||+|||.||||||||++++
T Consensus        80 ~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~a  158 (348)
T PTZ00203         80 RFGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRK-ARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGN  158 (348)
T ss_pred             EEeccccccCCHHHHHHHhcCCCcccccccccccccccc-cccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHH
Confidence            46889999999999975442110      1000001110 000111345555554  544 8999999999999999999


Q ss_pred             HHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc---CCCCCCCCCCCCCCCC---ccccCCC-Cce
Q psy3960         167 VEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH---GLPTQDDYGPYLGQDA---YCHIANT-TAT  239 (351)
Q Consensus       167 lE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~---Gi~~e~~y~PY~~~~~---~C~~~~~-~~~  239 (351)
                      ||+++++++++.+.||+|+|+||+.  .+.||+||+...||+|+.++   |+++|++| ||.+.++   .|+.... ...
T Consensus       159 iEs~~~i~~~~~~~LSeQqLvdC~~--~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~Y-PY~~~~~~~~~C~~~~~~~~~  235 (348)
T PTZ00203        159 IESQWAVAGHKLVRLSEQQLVSCDH--VDNGCGGGLMLQAFEWVLRNMNGTVFTEKSY-PYVSGNGDVPECSNSSELAPG  235 (348)
T ss_pred             HHHHHHHhcCCCccCCHHHHHhccC--CCCCCCCCCHHHHHHHHHHhcCCCCCccccC-CCccCCCCCCcCCCCcccccc
Confidence            9999999999999999999999985  47899999999999999865   58999999 9998776   5874332 345


Q ss_pred             eeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEc
Q psy3960         240 ATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKN  319 (351)
Q Consensus       240 ~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkN  319 (351)
                      +++++|..++. ++++||.+|+++|||+|+|++.  +|++|++|||..  |...  .++|||+|||||.++|++||||||
T Consensus       236 ~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a~--~f~~Y~~GIy~~--c~~~--~~nHaVliVGYG~~~g~~YWiikN  308 (348)
T PTZ00203        236 ARIDGYVSMES-SERVMAAWLAKNGPISIAVDAS--SFMSYHSGVLTS--CIGE--QLNHGVLLVGYNMTGEVPYWVIKN  308 (348)
T ss_pred             eEecceeecCc-CHHHHHHHHHhCCCEEEEEEhh--hhcCccCceeec--cCCC--CCCeEEEEEEEecCCCceEEEEEc
Confidence            78899988865 7889999999999999999985  899999999963  7543  579999999999988899999999


Q ss_pred             CCCCCCCCCcEEEEEecCCeeeecCCcEEeeC
Q psy3960         320 SWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM  351 (351)
Q Consensus       320 SWG~~WG~~GY~~Is~~~n~cgi~~~~~~~~~  351 (351)
                      |||++||++|||||+|+.|.|||++.|+..+|
T Consensus       309 SWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~~~  340 (348)
T PTZ00203        309 SWGEDWGEKGYVRVTMGVNACLLTGYPVSVHV  340 (348)
T ss_pred             CCCCCcCcCceEEEEcCCCcccccceEEEEec
Confidence            99999999999999999999999998887654

>KOG1543|consensus

Probab=100.00  E-value=8.1e-55  Score=419.86  Aligned_cols=248  Identities=40%  Similarity=0.726  Sum_probs=207.8

Q ss_pred             cccceeecCeeccceeeccccCcccceeEEEEEccCCCCCCcCcceeecC---CC-ccccCCccCchhhhhhHHHHHHHH
Q psy3960          96 YIGEELVNGIILEKWRLVTSEGEKVSKYSLWVRYNKASKDAIPVRYEMKG---YN-SLLDQSVCGSCWSFGTTGAVEGAY  171 (351)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plP~~~d~r~---~~-~v~dQg~cGSCWAfA~~~alE~~~  171 (351)
                      ..+.+.+.+++.++|................... ......+|.+||+|.   .. +++||+.||||||||++++||+++
T Consensus        69 ~~g~n~~~d~~~ee~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~  147 (325)
T KOG1543|consen   69 LMGVNQFADLTTEEFKRKKTGKKPPEIKRDKFTE-KLDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRY  147 (325)
T ss_pred             eeccccccccchHHHHHhhccccCcccccccccc-ccchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHH
Confidence            5667788888877776665432211110000110 111234555555554   23 489999999999999999999999


Q ss_pred             HHhcC-CceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCC-CCCCCCCCCCCCccccCCCCceeeEeeEEEec
Q psy3960         172 YMKHK-KLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPT-QDDYGPYLGQDAYCHIANTTATATMTGFVNVT  249 (351)
Q Consensus       172 ~~~~g-~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~-e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~  249 (351)
                      ++++| .++.||+|+|+||+.. .++||+||.+..|++|+.++|+++ |++| ||.+.++.|+.......+.+.++..++
T Consensus       148 ~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A~~yi~~~G~~t~~~~Y-py~~~~~~C~~~~~~~~~~~~~~~~~~  225 (325)
T KOG1543|consen  148 NIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNAFKYIKKNGGVTECENY-PYIGKDGTCKSNKKDKTVTIKGFYNVP  225 (325)
T ss_pred             HHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHHHHHHHHhCCCCCCcCC-CCcCCCCCccCCCccceeEeeeeeecC
Confidence            99999 9999999999999976 788999999999999999998777 9999 999999999998878888899999887


Q ss_pred             CCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCc
Q psy3960         250 PNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG  329 (351)
Q Consensus       250 ~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~G  329 (351)
                      .+ +++|+.+|+.+|||+|+|++.+ +|+.|++|||..+.|...  .++|||+|||||..++.+|||||||||+.||++|
T Consensus       226 ~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~~GVy~~~~~~~~--~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~G  301 (325)
T KOG1543|consen  226 AN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYKGGVYAEEKGDDK--EGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKG  301 (325)
T ss_pred             cC-HHHHHHHHHhcCCeEEEEeehh-hhhhccCceEeCCCCCCC--CCCceEEEEEEcCCCCceeEEEEcCCCCCcccCc
Confidence            64 9999999999999999999994 999999999999888653  5899999999999667899999999999999999


Q ss_pred             EEEEEecCCeeeecCCcEE-ee
Q psy3960         330 YVLMSIKDNNCGVMTAPTY-VT  350 (351)
Q Consensus       330 Y~~Is~~~n~cgi~~~~~~-~~  350 (351)
                      ||||.|+.|.|+|++.++| |.
T Consensus       302 y~ri~r~~~~~~I~~~~~~~p~  323 (325)
T KOG1543|consen  302 YFRIARGVNKCGIASEASYGPI  323 (325)
T ss_pred             eEEEecCCCchhhhcccccCCC
Confidence            9999999999999999998 64

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=100.00  E-value=3e-54  Score=401.27  Aligned_cols=209  Identities=32%  Similarity=0.660  Sum_probs=179.7

Q ss_pred             cCcceeecCCC-------ccccCCccCchhhhhhHHHHHHHHHHhcCC------ceecCHHHHhhhcCCCCCCCCCCCch
Q psy3960         137 IPVRYEMKGYN-------SLLDQSVCGSCWSFGTTGAVEGAYYMKHKK------LAVLSQQALIDCSWGYGNNGCDGGED  203 (351)
Q Consensus       137 lP~~~d~r~~~-------~v~dQg~cGSCWAfA~~~alE~~~~~~~g~------~~~LS~q~l~dc~~~~~~~gC~GG~~  203 (351)
                      ||.+||+|...       +|+||+.||||||||++++||+++++++++      .+.||+|+|+||+.  .+.||+||++
T Consensus         1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~--~~~GC~GG~~   78 (243)
T cd02621           1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ--YSQGCDGGFP   78 (243)
T ss_pred             CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC--CCCCCCCCCH
Confidence            47777777643       889999999999999999999999998875      78999999999984  4689999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCC-CCCccccCC-CCceeeEeeEEEec----CCCHHHHHHHHHcCCCEEEEEEcCcccc
Q psy3960         204 FRSYQWIMKHGLPTQDDYGPYLG-QDAYCHIAN-TTATATMTGFVNVT----PNSEDALKLALAKHGPVSVAIDASQKSF  277 (351)
Q Consensus       204 ~~a~~~l~~~Gi~~e~~y~PY~~-~~~~C~~~~-~~~~~~i~~y~~v~----~~~~~~ik~aL~~~GPV~v~i~~~~~~f  277 (351)
                      ..|++|++++|+++|++| ||.+ ..+.|+... ....+++..|..+.    ..++++||++|+++|||+++|++. ++|
T Consensus        79 ~~a~~~~~~~Gi~~e~~y-PY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F  156 (243)
T cd02621          79 FLVGKFAEDFGIVTEDYF-PYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDF  156 (243)
T ss_pred             HHHHHHHHhcCcCCCcee-CCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-ccc
Confidence            999999999999999999 9998 778898654 33445555555442    347899999999999999999998 799


Q ss_pred             ccccCcEEecCC----CCCC------CCCCCeEEEEEEEeeeC--CeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCC
Q psy3960         278 SFYVNGVYYDEK----CNNS------PDGLDHAVLAVGYGELD--GKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTA  345 (351)
Q Consensus       278 ~~y~~Giy~~~~----~~~~------~~~~~HaV~iVGyg~~~--g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~  345 (351)
                      .+|++|||....    |...      ...++|||+|||||+++  +.+|||||||||++||++|||||+|+.|.|||+++
T Consensus       157 ~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~  236 (243)
T cd02621         157 DFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQ  236 (243)
T ss_pred             cccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccc
Confidence            999999998764    6432      12579999999999886  88999999999999999999999999999999999


Q ss_pred             cEEe
Q psy3960         346 PTYV  349 (351)
Q Consensus       346 ~~~~  349 (351)
                      +++.
T Consensus       237 ~~~~  240 (243)
T cd02621         237 AVFA  240 (243)
T ss_pred             eEee
Confidence            9764

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=100.00  E-value=2.4e-53  Score=393.79  Aligned_cols=194  Identities=28%  Similarity=0.581  Sum_probs=168.0

Q ss_pred             ccccCCccCchhhhhhHHHHHHHHHHhcC--CceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCCCCC
Q psy3960         148 SLLDQSVCGSCWSFGTTGAVEGAYYMKHK--KLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYL  225 (351)
Q Consensus       148 ~v~dQg~cGSCWAfA~~~alE~~~~~~~g--~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~PY~  225 (351)
                      +|+|||.||||||||++++||+++.++++  +.+.||+|+|+||+.. .+.||+||++..||+|++++|+++|++| ||.
T Consensus        18 ~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~~i~~~G~~~e~~y-PY~   95 (236)
T cd02620          18 EIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWKYLTTTGVVTGGCQ-PYT   95 (236)
T ss_pred             ccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHHHHHhcCCCcCCEe-cCc
Confidence            88999999999999999999999999887  7899999999999853 4789999999999999999999999999 998


Q ss_pred             CCCCc------------------cccCC----CCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCc
Q psy3960         226 GQDAY------------------CHIAN----TTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNG  283 (351)
Q Consensus       226 ~~~~~------------------C~~~~----~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~G  283 (351)
                      +.+..                  |....    ....+++..+..+. .++++||.+|+++|||+++|.+. ++|+.|++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~v~i~~~-~~f~~Y~~G  173 (236)
T cd02620          96 IPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQAAFTVY-EDFLYYKSG  173 (236)
T ss_pred             CCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeEEEEEec-hhhhhcCCc
Confidence            76543                  33221    12234556666664 37899999999999999999997 799999999


Q ss_pred             EEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEE
Q psy3960         284 VYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY  348 (351)
Q Consensus       284 iy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~  348 (351)
                      ||... |..  ..++|||+|||||++++.+|||||||||++||++|||||+|+.|.|||+++++.
T Consensus       174 iy~~~-~~~--~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~  235 (236)
T cd02620         174 VYQHT-SGK--QLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA  235 (236)
T ss_pred             EEeec-CCC--CcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence            99754 433  257999999999998899999999999999999999999999999999998863

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=100.00  E-value=4.5e-53  Score=392.58  Aligned_cols=204  Identities=27%  Similarity=0.582  Sum_probs=177.5

Q ss_pred             cCcceeecC------CCccccCC---ccCchhhhhhHHHHHHHHHHhcC---CceecCHHHHhhhcCCCCCCCCCCCchH
Q psy3960         137 IPVRYEMKG------YNSLLDQS---VCGSCWSFGTTGAVEGAYYMKHK---KLAVLSQQALIDCSWGYGNNGCDGGEDF  204 (351)
Q Consensus       137 lP~~~d~r~------~~~v~dQg---~cGSCWAfA~~~alE~~~~~~~g---~~~~LS~q~l~dc~~~~~~~gC~GG~~~  204 (351)
                      +|.+||||.      ..+|+|||   .||||||||++++||+++.++++   ..+.||+|+|+||+.   +.||+||++.
T Consensus         1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~~   77 (239)
T cd02698           1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDPG   77 (239)
T ss_pred             CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCHH
Confidence            466666664      33889998   99999999999999999998875   467999999999984   6899999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCCCccccCC---------------CCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEE
Q psy3960         205 RSYQWIMKHGLPTQDDYGPYLGQDAYCHIAN---------------TTATATMTGFVNVTPNSEDALKLALAKHGPVSVA  269 (351)
Q Consensus       205 ~a~~~l~~~Gi~~e~~y~PY~~~~~~C~~~~---------------~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~  269 (351)
                      .||+|++++|+++|++| ||.+.++.|....               ....+++++|..++  +.++||++|+++|||+++
T Consensus        78 ~a~~~~~~~Gl~~e~~y-PY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~  154 (239)
T cd02698          78 GVYEYAHKHGIPDETCN-PYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCG  154 (239)
T ss_pred             HHHHHHHHcCcCCCCee-CCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEE
Confidence            99999999999999999 9998777775311               12346778887774  578999999999999999


Q ss_pred             EEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeC-CeeEEEEEcCCCCCCCCCcEEEEEecC-----Ceeeec
Q psy3960         270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELD-GKPYWQVKNSWSTYWGNQGYVLMSIKD-----NNCGVM  343 (351)
Q Consensus       270 i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~-g~~ywivkNSWG~~WG~~GY~~Is~~~-----n~cgi~  343 (351)
                      |.+. ++|+.|++|||....|..   .++|||+|||||+++ +++|||||||||++||++|||||+|+.     |+||||
T Consensus       155 i~~~-~~f~~Y~~GIy~~~~~~~---~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~  230 (239)
T cd02698         155 IMAT-EALENYTGGVYKEYVQDP---LINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIE  230 (239)
T ss_pred             EEec-ccccccCCeEEccCCCCC---cCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccc
Confidence            9998 699999999998766643   589999999999886 899999999999999999999999999     999999


Q ss_pred             CCcEEee
Q psy3960         344 TAPTYVT  350 (351)
Q Consensus       344 ~~~~~~~  350 (351)
                      ++++|+.
T Consensus       231 ~~~~~~~  237 (239)
T cd02698         231 EDCAWAD  237 (239)
T ss_pred             cceEEEe
Confidence            9999975

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=100.00  E-value=4.8e-53  Score=383.71  Aligned_cols=210  Identities=39%  Similarity=0.775  Sum_probs=184.4

Q ss_pred             cCcceeecCC----CccccCCccCchhhhhhHHHHHHHHHHhc-CCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHH
Q psy3960         137 IPVRYEMKGY----NSLLDQSVCGSCWSFGTTGAVEGAYYMKH-KKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM  211 (351)
Q Consensus       137 lP~~~d~r~~----~~v~dQg~cGSCWAfA~~~alE~~~~~~~-g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~  211 (351)
                      ||.+||+|..    .+|+||+.||+|||||++++||++++++. ...++||+|+|++|.. ..+.+|+||++..|+++++
T Consensus         1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~~~~   79 (219)
T PF00112_consen    1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALKYIK   79 (219)
T ss_dssp             STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHHHHH
T ss_pred             CCCCEecccCCCCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccceeec
Confidence            5777888874    47899999999999999999999999999 7899999999999996 4567999999999999999


Q ss_pred             H-cCCCCCCCCCCCCCCC-CccccCCCCc-eeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecC
Q psy3960         212 K-HGLPTQDDYGPYLGQD-AYCHIANTTA-TATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDE  288 (351)
Q Consensus       212 ~-~Gi~~e~~y~PY~~~~-~~C~~~~~~~-~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~  288 (351)
                      + +|+++|++| ||.+.. ..|....... ..++..|..+...++++||++|+++|||+++|.+..++|..|++|||..+
T Consensus        80 ~~~Gi~~e~~~-pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~  158 (219)
T PF00112_consen   80 NNNGIVTEEDY-PYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPP  158 (219)
T ss_dssp             HHTSBEBTTTS---SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECST
T ss_pred             ccCcccccccc-cccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecc
Confidence            9 899999999 999887 6898765544 48999999998878999999999999999999999446999999999988


Q ss_pred             CCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCC-eeeecCCcEEee
Q psy3960         289 KCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN-NCGVMTAPTYVT  350 (351)
Q Consensus       289 ~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n-~cgi~~~~~~~~  350 (351)
                      .|..  ..++|||+|||||++.+++|||||||||+.||++||+||+|+.| .|||+++++||+
T Consensus       159 ~~~~--~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~  219 (219)
T PF00112_consen  159 DCSN--ESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI  219 (219)
T ss_dssp             SSSS--SSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred             cccc--ccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence            7754  37899999999999999999999999999999999999999887 999999999996

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>PTZ00021 falcipain-2; Provisional

Probab=100.00  E-value=4.9e-53  Score=422.73  Aligned_cols=245  Identities=31%  Similarity=0.630  Sum_probs=197.2

Q ss_pred             cccceeecCeeccceeeccccCc----cc-cee----EEEE---E-ccCCCCCCcCcceeec--CC-CccccCCccCchh
Q psy3960          96 YIGEELVNGIILEKWRLVTSEGE----KV-SKY----SLWV---R-YNKASKDAIPVRYEMK--GY-NSLLDQSVCGSCW  159 (351)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~~~~----~~-~~~----~~~~---~-~~~~~~~plP~~~d~r--~~-~~v~dQg~cGSCW  159 (351)
                      .+|++.|.|++.++|+..+....    +. ...    ..+.   . ..+......|.+||||  +. .||+|||.|||||
T Consensus       212 ~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCW  291 (489)
T PTZ00021        212 KKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCW  291 (489)
T ss_pred             EEeccccccCCHHHHHHHhccccccccccccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHH
Confidence            56789999999999875542111    00 000    0000   0 0000011125455554  44 4889999999999


Q ss_pred             hhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc-CCCCCCCCCCCCCC-CCccccCCCC
Q psy3960         160 SFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQ-DAYCHIANTT  237 (351)
Q Consensus       160 AfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~-Gi~~e~~y~PY~~~-~~~C~~~~~~  237 (351)
                      |||++++||+++++++++.+.||+|+|+||+.  .+.||+||++..||+|+.++ |+++|++| ||.+. .+.|....+.
T Consensus       292 AFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~--~n~GC~GG~~~~Af~yi~~~gGl~tE~~Y-PY~~~~~~~C~~~~~~  368 (489)
T PTZ00021        292 AFSTVGVVESQYAIRKNELVSLSEQELVDCSF--KNNGCYGGLIPNAFEDMIELGGLCSEDDY-PYVSDTPELCNIDRCK  368 (489)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCHHHHhhhcc--CCCCCCCcchHhhhhhhhhccccCccccc-CccCCCCCcccccccc
Confidence            99999999999999999999999999999984  57899999999999999877 89999999 99987 4789876666


Q ss_pred             ceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCC------
Q psy3960         238 ATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG------  311 (351)
Q Consensus       238 ~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g------  311 (351)
                      ..++|++|..++   .++||.+|+.+|||+|+|++. .+|++|++|||.. .|..   .++|||+|||||++++      
T Consensus       369 ~~~~i~~y~~i~---~~~lk~al~~~GPVsv~i~a~-~~f~~YkgGIy~~-~C~~---~~nHAVlIVGYG~e~~~~~~~~  440 (489)
T PTZ00021        369 EKYKIKSYVSIP---EDKFKEAIRFLGPISVSIAVS-DDFAFYKGGIFDG-ECGE---EPNHAVILVGYGMEEIYNSDTK  440 (489)
T ss_pred             ccceeeeEEEec---HHHHHHHHHhcCCeEEEEEee-cccccCCCCcCCC-CCCC---ccceEEEEEEecCcCCcccccc
Confidence            778999999885   468999999999999999998 7999999999864 5854   4799999999997632      


Q ss_pred             ----eeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         312 ----KPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       312 ----~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                          .+|||||||||++||++|||||+|+.    |.|||++.|+||++
T Consensus       441 ~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~  488 (489)
T PTZ00021        441 KMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPLI  488 (489)
T ss_pred             cCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEec
Confidence                46999999999999999999999975    58999999999985

>PTZ00200 cysteine proteinase; Provisional

Probab=100.00  E-value=1.9e-51  Score=409.64  Aligned_cols=203  Identities=33%  Similarity=0.667  Sum_probs=175.1

Q ss_pred             cCcceeec--CC-CccccCC-ccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHH
Q psy3960         137 IPVRYEMK--GY-NSLLDQS-VCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMK  212 (351)
Q Consensus       137 lP~~~d~r--~~-~~v~dQg-~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~  212 (351)
                      +|..||||  +. .||+||| .||||||||++++||++++++++..+.||+|+|+||+.  .+.||+||++..||+|+++
T Consensus       234 ~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQqLvDC~~--~~~GC~GG~~~~A~~yi~~  311 (448)
T PTZ00200        234 TGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDT--KSQGCSGGYPDTALEYVKN  311 (448)
T ss_pred             CCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHHHhhccC--ccCCCCCCcHHHHHHHHhh
Confidence            35555555  43 4889999 99999999999999999999999999999999999985  5789999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         213 HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       213 ~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      +|+++|++| ||.+.++.|..... ..++|.+|..++  +.+.++.++ .+|||+|+|.++ ++|++|++|||.. .|..
T Consensus       312 ~Gi~~e~~Y-PY~~~~~~C~~~~~-~~~~i~~y~~~~--~~~~l~~~l-~~GPV~v~i~~~-~~f~~Yk~GIy~~-~C~~  384 (448)
T PTZ00200        312 KGLSSSSDV-PYLAKDGKCVVSST-KKVYIDSYLVAK--GKDVLNKSL-VISPTVVYIAVS-RELLKYKSGVYNG-ECGK  384 (448)
T ss_pred             cCccccccC-CCCCCCCCCcCCCC-CeeEecceEecC--HHHHHHHHH-hcCCEEEEeecc-cccccCCCCcccc-ccCC
Confidence            999999999 99999999986543 346788887664  345566555 579999999998 7999999999965 5854


Q ss_pred             CCCCCCeEEEEEEEee--eCCeeEEEEEcCCCCCCCCCcEEEEEec---CCeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGE--LDGKPYWQVKNSWSTYWGNQGYVLMSIK---DNNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~--~~g~~ywivkNSWG~~WG~~GY~~Is~~---~n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||.  ++|.+|||||||||++||++|||||+|+   .|.|||++.+.||++
T Consensus       385 ---~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~  445 (448)
T PTZ00200        385 ---SLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF  445 (448)
T ss_pred             ---CCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence               3799999999984  3678999999999999999999999995   589999999999975

>PTZ00049 cathepsin C-like protein; Provisional

Probab=100.00  E-value=1.1e-49  Score=407.08  Aligned_cols=213  Identities=27%  Similarity=0.566  Sum_probs=178.0

Q ss_pred             CCCcCcceeecCC-------CccccCCccCchhhhhhHHHHHHHHHHhcCC-----c-----eecCHHHHhhhcCCCCCC
Q psy3960         134 KDAIPVRYEMKGY-------NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKK-----L-----AVLSQQALIDCSWGYGNN  196 (351)
Q Consensus       134 ~~plP~~~d~r~~-------~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~-----~-----~~LS~q~l~dc~~~~~~~  196 (351)
                      ...+|.+||||..       .+|+|||.||||||||++++||+++++++++     .     ..||+|+|+||+.  .+.
T Consensus       378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~--~nq  455 (693)
T PTZ00049        378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF--YDQ  455 (693)
T ss_pred             cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC--CCC
Confidence            3468888998863       4789999999999999999999999998642     1     2799999999985  578


Q ss_pred             CCCCCchHHHHHHHHHcCCCCCCCCCCCCCCCCccccCCC---------------------------------------C
Q psy3960         197 GCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANT---------------------------------------T  237 (351)
Q Consensus       197 gC~GG~~~~a~~~l~~~Gi~~e~~y~PY~~~~~~C~~~~~---------------------------------------~  237 (351)
                      ||+||++..|++|+.++||++|++| ||.+..+.|+....                                       .
T Consensus       456 GC~GG~~~~A~kya~~~GI~tEscY-PY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (693)
T PTZ00049        456 GCNGGFPYLVSKMAKLQGIPLDKVF-PYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEP  534 (693)
T ss_pred             CcCCCcHHHHHHHHHHCCCCcCCcc-CCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999 99988888864221                                       1


Q ss_pred             ceeeEeeEEEec-------CCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecC------CCCCC-----------
Q psy3960         238 ATATMTGFVNVT-------PNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDE------KCNNS-----------  293 (351)
Q Consensus       238 ~~~~i~~y~~v~-------~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~------~~~~~-----------  293 (351)
                      ..+.+++|..+.       ..++++||.+|+++|||+|+|++. ++|++|++|||..+      .|...           
T Consensus       535 ~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~  613 (693)
T PTZ00049        535 ARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNIT  613 (693)
T ss_pred             cceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCcccccccccccc
Confidence            123455665553       246889999999999999999997 78999999999864      36432           


Q ss_pred             -CCCCCeEEEEEEEeee--CCe--eEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEee
Q psy3960         294 -PDGLDHAVLAVGYGEL--DGK--PYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT  350 (351)
Q Consensus       294 -~~~~~HaV~iVGyg~~--~g~--~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~~  350 (351)
                       ....+|||+|||||.+  +|.  +|||||||||+.||++|||||+|+.|.|||+++++|+.
T Consensus       614 G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~  675 (693)
T PTZ00049        614 GWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIE  675 (693)
T ss_pred             ccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEe
Confidence             1246999999999975  453  79999999999999999999999999999999999875

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=100.00  E-value=2.4e-48  Score=393.11  Aligned_cols=211  Identities=21%  Similarity=0.380  Sum_probs=174.1

Q ss_pred             CCcCcceeecCC------CccccCCc---cCchhhhhhHHHHHHHHHHhcC------CceecCHHHHhhhcCCCCCCCCC
Q psy3960         135 DAIPVRYEMKGY------NSLLDQSV---CGSCWSFGTTGAVEGAYYMKHK------KLAVLSQQALIDCSWGYGNNGCD  199 (351)
Q Consensus       135 ~plP~~~d~r~~------~~v~dQg~---cGSCWAfA~~~alE~~~~~~~g------~~~~LS~q~l~dc~~~~~~~gC~  199 (351)
                      .++|.+||||..      .+++||+.   ||||||||++++||++++++++      +.+.||+|+|+||+.  .+.||+
T Consensus       203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~--~n~GCd  280 (548)
T PTZ00364        203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ--YGQGCA  280 (548)
T ss_pred             cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC--CCCCCC
Confidence            457877777753      36899999   9999999999999999999883      468999999999984  478999


Q ss_pred             CCchHHHHHHHHHcCCCCCCCC-CCCCCCCC---ccccCCCCceeeEeeEEEec-----CCCHHHHHHHHHcCCCEEEEE
Q psy3960         200 GGEDFRSYQWIMKHGLPTQDDY-GPYLGQDA---YCHIANTTATATMTGFVNVT-----PNSEDALKLALAKHGPVSVAI  270 (351)
Q Consensus       200 GG~~~~a~~~l~~~Gi~~e~~y-~PY~~~~~---~C~~~~~~~~~~i~~y~~v~-----~~~~~~ik~aL~~~GPV~v~i  270 (351)
                      ||++..|++|++++|+++|++| .||.+.++   .|+.......++++++..+.     ..++++||.+|+++|||+|+|
T Consensus       281 GG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaI  360 (548)
T PTZ00364        281 GGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASV  360 (548)
T ss_pred             CCcHHHHHHHHHhCCcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEE
Confidence            9999999999999999999987 48987665   48765554445555443321     247889999999999999999


Q ss_pred             EcCccccccccCcEEecC--------CCCC-C-------CCCCCeEEEEEEEee-eCCeeEEEEEcCCCC--CCCCCcEE
Q psy3960         271 DASQKSFSFYVNGVYYDE--------KCNN-S-------PDGLDHAVLAVGYGE-LDGKPYWQVKNSWST--YWGNQGYV  331 (351)
Q Consensus       271 ~~~~~~f~~y~~Giy~~~--------~~~~-~-------~~~~~HaV~iVGyg~-~~g~~ywivkNSWG~--~WG~~GY~  331 (351)
                      +++ .+|+.|++|+|...        .|.. .       ...++|||+|||||. ++|.+|||||||||+  +||++|||
T Consensus       361 da~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYf  439 (548)
T PTZ00364        361 YAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTR  439 (548)
T ss_pred             Eec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeE
Confidence            998 78999999987521        1110 0       125799999999997 478899999999999  99999999


Q ss_pred             EEEecCCeeeecCCcEE
Q psy3960         332 LMSIKDNNCGVMTAPTY  348 (351)
Q Consensus       332 ~Is~~~n~cgi~~~~~~  348 (351)
                      ||+|+.|+||||++++.
T Consensus       440 RI~RG~N~CGIes~~v~  456 (548)
T PTZ00364        440 KIARGVNAYNIESEVVV  456 (548)
T ss_pred             EEEcCCCcccccceeee
Confidence            99999999999999884

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=100.00  E-value=3.8e-45  Score=332.41  Aligned_cols=189  Identities=33%  Similarity=0.527  Sum_probs=165.8

Q ss_pred             CCccccCCccCchhhhhhHHHHHHHHHHhcC--CceecCHHHHhhhcCCCC---CCCCCCCchHHHHH-HHHHcCCCCCC
Q psy3960         146 YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHK--KLAVLSQQALIDCSWGYG---NNGCDGGEDFRSYQ-WIMKHGLPTQD  219 (351)
Q Consensus       146 ~~~v~dQg~cGSCWAfA~~~alE~~~~~~~g--~~~~LS~q~l~dc~~~~~---~~gC~GG~~~~a~~-~l~~~Gi~~e~  219 (351)
                      ..+|+|||.||+|||||++++||++++++.+  +.++||+|+|++|.....   ..+|+||.+..++. +++++|+++|+
T Consensus         9 ~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~~~~Gi~~e~   88 (223)
T cd02619           9 LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVALKGIPPEE   88 (223)
T ss_pred             CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHHHHcCCCccc
Confidence            3689999999999999999999999999987  889999999999986533   37999999999998 88889999999


Q ss_pred             CCCCCCCCCCccccC----CCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEe-----cCCC
Q psy3960         220 DYGPYLGQDAYCHIA----NTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYY-----DEKC  290 (351)
Q Consensus       220 ~y~PY~~~~~~C~~~----~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~-----~~~~  290 (351)
                      +| ||...+..|+..    .....+++..|..+...++++||++|+++|||++++.+. ..|..|++|+++     ...+
T Consensus        89 ~~-Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  166 (223)
T cd02619          89 DY-PYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIYEEIVYLLYE  166 (223)
T ss_pred             cC-CCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCccccccccccccC
Confidence            99 999988777643    345678999999998778999999999999999999998 899999999873     2223


Q ss_pred             CCCCCCCCeEEEEEEEeeeC--CeeEEEEEcCCCCCCCCCcEEEEEecCC
Q psy3960         291 NNSPDGLDHAVLAVGYGELD--GKPYWQVKNSWSTYWGNQGYVLMSIKDN  338 (351)
Q Consensus       291 ~~~~~~~~HaV~iVGyg~~~--g~~ywivkNSWG~~WG~~GY~~Is~~~n  338 (351)
                        ....++|||+|||||++.  +++|||||||||+.||++||+||++++.
T Consensus       167 --~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~~  214 (223)
T cd02619         167 --DGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYEDV  214 (223)
T ss_pred             --CCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhhh
Confidence              233689999999999986  8899999999999999999999999543

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>smart00645 Pept_C1 Papain family cysteine protease

Probab=100.00  E-value=4.2e-45  Score=323.66  Aligned_cols=164  Identities=50%  Similarity=0.988  Sum_probs=144.2

Q ss_pred             cCcceeecCC---CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKGY---NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~~---~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|..   .+|+||+.||+|||||++++||+++++++++.++||+|+|++|... .+.+|+||.+..|++|+.++
T Consensus         1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~~~~~   79 (174)
T smart00645        1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEYIKKN   79 (174)
T ss_pred             CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHHHHHc
Confidence            4667777753   3789999999999999999999999999998999999999999964 46699999999999999998


Q ss_pred             -CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 -GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                       |+++|++| ||.+                                        ++.+.+.  +|.+|++|||..+.|..
T Consensus        80 ~Gi~~e~~~-PY~~----------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~~~  116 (174)
T smart00645       80 GGLETESCY-PYTG----------------------------------------SVAIDAS--DFQFYKSGIYDHPGCGS  116 (174)
T ss_pred             CCccccccc-Cccc----------------------------------------EEEEEcc--cccCCcCeEECCCCCCC
Confidence             99999999 9975                                        5556554  69999999998777754


Q ss_pred             CCCCCCeEEEEEEEeee-CCeeEEEEEcCCCCCCCCCcEEEEEecC-CeeeecCCc
Q psy3960         293 SPDGLDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAP  346 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~-~g~~ywivkNSWG~~WG~~GY~~Is~~~-n~cgi~~~~  346 (351)
                      .  .++|+|+|||||.+ +|++|||||||||+.||++|||||+++. |.|||++..
T Consensus       117 ~--~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~  170 (174)
T smart00645      117 G--TLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV  170 (174)
T ss_pred             C--cccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence            2  47999999999987 8899999999999999999999999987 999996544

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=100.00  E-value=4.9e-44  Score=374.81  Aligned_cols=199  Identities=27%  Similarity=0.495  Sum_probs=165.6

Q ss_pred             ccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCc-hHHHHHHHHHcC-CCCCCCCCCCC
Q psy3960         148 SLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGE-DFRSYQWIMKHG-LPTQDDYGPYL  225 (351)
Q Consensus       148 ~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~-~~~a~~~l~~~G-i~~e~~y~PY~  225 (351)
                      +|+|||.||+|||||++++||++++++++..+.||+|+|+||++..++.||.||. ...++.|++++| +++|++| ||.
T Consensus       546 ~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdY-PYt  624 (1004)
T PTZ00462        546 QIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNY-LYN  624 (1004)
T ss_pred             CcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccC-CCc
Confidence            7789999999999999999999999999989999999999999766788999997 556679998885 8999999 997


Q ss_pred             C--CCCccccCCC------------------CceeeEeeEEEecCC----C----HHHHHHHHHcCCCEEEEEEcCcccc
Q psy3960         226 G--QDAYCHIANT------------------TATATMTGFVNVTPN----S----EDALKLALAKHGPVSVAIDASQKSF  277 (351)
Q Consensus       226 ~--~~~~C~~~~~------------------~~~~~i~~y~~v~~~----~----~~~ik~aL~~~GPV~v~i~~~~~~f  277 (351)
                      .  ..+.|+....                  .....+.+|..+.+.    +    +++||++|++.|||+|+|++.  +|
T Consensus       625 ~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--df  702 (1004)
T PTZ00462        625 YTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--NV  702 (1004)
T ss_pred             cCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--hH
Confidence            5  5667874321                  112344567666442    1    468999999999999999986  57


Q ss_pred             ccc-cCcEEecCCCCCCCCCCCeEEEEEEEeee-----CCeeEEEEEcCCCCCCCCCcEEEEEe-cCCeeeecCCcEEee
Q psy3960         278 SFY-VNGVYYDEKCNNSPDGLDHAVLAVGYGEL-----DGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVT  350 (351)
Q Consensus       278 ~~y-~~Giy~~~~~~~~~~~~~HaV~iVGyg~~-----~g~~ywivkNSWG~~WG~~GY~~Is~-~~n~cgi~~~~~~~~  350 (351)
                      +.| .+|+|....|+..  .++|||+|||||..     ++++|||||||||++||++|||||.| +.|.|||....++|+
T Consensus       703 ~~Y~~sGIyv~~~Cgs~--~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~  780 (1004)
T PTZ00462        703 LGYEFNGKKVQNLCGDD--TADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVI  780 (1004)
T ss_pred             HhhhcCCccccCCCCCC--cCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeee
Confidence            777 4899888888653  57999999999964     25689999999999999999999998 789999988777776


Q ss_pred             C
Q psy3960         351 M  351 (351)
Q Consensus       351 ~  351 (351)
                      +
T Consensus       781 f  781 (1004)
T PTZ00462        781 F  781 (1004)
T ss_pred             E
Confidence            4

>KOG1544|consensus

Probab=100.00  E-value=1.3e-39  Score=302.20  Aligned_cols=256  Identities=25%  Similarity=0.465  Sum_probs=202.9

Q ss_pred             chhhhhcccccccceeecCeecc---ceeeccccCcccc--eeEEEEEccCCCCCCcCcceeecCCC-----ccccCCcc
Q psy3960          86 ENEKIRYNWTYIGEELVNGIILE---KWRLVTSEGEKVS--KYSLWVRYNKASKDAIPVRYEMKGYN-----SLLDQSVC  155 (351)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~plP~~~d~r~~~-----~v~dQg~c  155 (351)
                      .-++-++.|+.-+...|.|.+.+   +|++.+.......  -..++..++  +...||.-|+.+..+     +|.||++|
T Consensus       155 ~in~G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~~l~--p~~~LPE~F~As~KWp~liH~plDQgnC  232 (470)
T KOG1544|consen  155 AINQGNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYTVLN--PGEVLPEAFEASEKWPNLIHEPLDQGNC  232 (470)
T ss_pred             HHhcCCccccccchhhhhcccccccceeeecccCchhhhhhHHhHhhccC--cccccchhhhhhhcCCccccCccccCCc
Confidence            34677889999999999999875   5666654332211  111222222  345689999988755     67799999


Q ss_pred             CchhhhhhHHHHHHHHHHhc-C-CceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCCC----C
Q psy3960         156 GSCWSFGTTGAVEGAYYMKH-K-KLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQD----A  229 (351)
Q Consensus       156 GSCWAfA~~~alE~~~~~~~-g-~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~PY~~~~----~  229 (351)
                      ++.|||+++++..+++.|+. | -...||+|+|++|... ..+||+||.+.+|+-||++.|++...+| ||.+.+    +
T Consensus       233 a~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h-~q~GC~gG~lDRAWWYlRKrGvVsdhCY-P~~~dQ~~~~~  310 (470)
T KOG1544|consen  233 AGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTH-QQQGCRGGRLDRAWWYLRKRGVVSDHCY-PFSGDQAGPAP  310 (470)
T ss_pred             ccceeeeeehhccceeEEeeccccccccChHHhcchhhh-hhccCccCcccchheeeecccccccccc-cccCCCCCCCC
Confidence            99999999999999999887 3 4568999999999853 5789999999999999999999999999 997522    2


Q ss_pred             cc------------------ccC--CCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCC
Q psy3960         230 YC------------------HIA--NTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEK  289 (351)
Q Consensus       230 ~C------------------~~~--~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~  289 (351)
                      .|                  ...  ++...++++--++|++ ++++|+++|+.+|||.+-+.|. ++|+.|++|||...+
T Consensus       311 ~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSS-nE~eImkElM~NGPVQA~m~VH-EDFF~YkgGiY~H~~  388 (470)
T KOG1544|consen  311 PCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSS-NEKEIMKELMENGPVQALMEVH-EDFFLYKGGIYSHTP  388 (470)
T ss_pred             CceeeccccCcccccccCcCCCcccccCceeeecCCeeccC-CHHHHHHHHHhCCChhhhhhhh-hhhhhhccceeeccc
Confidence            23                  221  1235677777778854 8999999999999999999886 999999999998654


Q ss_pred             CCC-----CCCCCCeEEEEEEEeeeC-----CeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcE
Q psy3960         290 CNN-----SPDGLDHAVLAVGYGELD-----GKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPT  347 (351)
Q Consensus       290 ~~~-----~~~~~~HaV~iVGyg~~~-----g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~  347 (351)
                      -..     ....+.|+|.|.|||.+.     ..+||+..||||+.||++|||+|-|+.|.|.||+..+
T Consensus       389 ~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvI  456 (470)
T KOG1544|consen  389 VSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVI  456 (470)
T ss_pred             cccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhh
Confidence            322     223689999999999872     3579999999999999999999999999999998643

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-27  Score=227.53  Aligned_cols=198  Identities=23%  Similarity=0.362  Sum_probs=135.1

Q ss_pred             CcCcceeecCCC---ccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhh-----hcCCCCCCCCCCCchHHHH
Q psy3960         136 AIPVRYEMKGYN---SLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALID-----CSWGYGNNGCDGGEDFRSY  207 (351)
Q Consensus       136 plP~~~d~r~~~---~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~d-----c~~~~~~~gC~GG~~~~a~  207 (351)
                      .+|..|++|...   +|+|||.||+|||||++++||+.+.-..  ...+|+..+..     |...+.-.--+||....+.
T Consensus        98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~  175 (372)
T COG4870          98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSA  175 (372)
T ss_pred             cchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCcccccc
Confidence            378889988654   8899999999999999999999986543  34555544433     3322221223478888888


Q ss_pred             HHHHHc-CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecC----CCHHHHHHHHHcCCCEEEEEEcCccccccccC
Q psy3960         208 QWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP----NSEDALKLALAKHGPVSVAIDASQKSFSFYVN  282 (351)
Q Consensus       208 ~~l~~~-Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~----~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~  282 (351)
                      .|+.+. |.+.|.+- ||......|+.... ...+...-..+++    -+...||+++...|-+...|.+....+.....
T Consensus       176 a~l~e~sgpv~et~d-~y~~~s~~~~~~~p-~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~~~  253 (372)
T COG4870         176 AYLTEWSGPVYETDD-PYSENSYFSPTNLP-VTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICI  253 (372)
T ss_pred             ccccccCCcchhhcC-ccccccccCCcCCc-hhhccccceecccchhhhcccchHHHHhhhccccceeEEeccccccccc
Confidence            888888 88888888 99988777765322 1122222222222    12344888888888777555443223322334


Q ss_pred             cEEecCCCCCCCCCCCeEEEEEEEeee----------CCeeEEEEEcCCCCCCCCCcEEEEEecCCeee
Q psy3960         283 GVYYDEKCNNSPDGLDHAVLAVGYGEL----------DGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCG  341 (351)
Q Consensus       283 Giy~~~~~~~~~~~~~HaV~iVGyg~~----------~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cg  341 (351)
                      +.++....    ...+|||+||||||.          .|.++||||||||++||++|||||+|++-.-|
T Consensus       254 ~~~~~~s~----~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~~g  318 (372)
T COG4870         254 PYPYVDSG----ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALNG  318 (372)
T ss_pred             CCCCCCcc----ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeecccc
Confidence            44443321    368999999999997          46789999999999999999999999764444

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.91  E-value=6.5e-24  Score=211.02  Aligned_cols=180  Identities=27%  Similarity=0.328  Sum_probs=132.5

Q ss_pred             ccccCCccCchhhhhhHHHHHHHHHHhc-CCceecCHHHHhh----------------hcCC----------CCCCCCCC
Q psy3960         148 SLLDQSVCGSCWSFGTTGAVEGAYYMKH-KKLAVLSQQALID----------------CSWG----------YGNNGCDG  200 (351)
Q Consensus       148 ~v~dQg~cGSCWAfA~~~alE~~~~~~~-g~~~~LS~q~l~d----------------c~~~----------~~~~gC~G  200 (351)
                      +|.||++.|.||.||+...||..+.++. .+.++||+.++.-                +...          ......+|
T Consensus        56 ~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~DG  135 (437)
T cd00585          56 PVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQNDG  135 (437)
T ss_pred             CcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCCC
Confidence            7889999999999999999999998754 5789999987765                2100          12456789


Q ss_pred             CchHHHHHHHHHcCCCCCCCCCCCCCCCC---------------------------------------------------
Q psy3960         201 GEDFRSYQWIMKHGLPTQDDYGPYLGQDA---------------------------------------------------  229 (351)
Q Consensus       201 G~~~~a~~~l~~~Gi~~e~~y~PY~~~~~---------------------------------------------------  229 (351)
                      |....+...+.++|+++++.| |-+....                                                   
T Consensus       136 Gqw~m~~~li~KYGvVPk~~~-pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~~  214 (437)
T cd00585         136 GQWDMLVNLIEKYGLVPKSVM-PESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAIA  214 (437)
T ss_pred             CchHHHHHHHHHcCCCccccc-CCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 8542100                                                   


Q ss_pred             --c---------------------------------ccc---------CC----CCcee-----------eEeeEEEecC
Q psy3960         230 --Y---------------------------------CHI---------AN----TTATA-----------TMTGFVNVTP  250 (351)
Q Consensus       230 --~---------------------------------C~~---------~~----~~~~~-----------~i~~y~~v~~  250 (351)
                        .                                 |..         +.    -...+           +...|.+++ 
T Consensus       215 lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp-  293 (437)
T cd00585         215 LGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP-  293 (437)
T ss_pred             cCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC-
Confidence              0                                 000         00    00011           112334443 


Q ss_pred             CCHHHHH----HHHHcCCCEEEEEEcCccccccccCcEEecCC--------------------CCCCCCCCCeEEEEEEE
Q psy3960         251 NSEDALK----LALAKHGPVSVAIDASQKSFSFYVNGVYYDEK--------------------CNNSPDGLDHAVLAVGY  306 (351)
Q Consensus       251 ~~~~~ik----~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~--------------------~~~~~~~~~HaV~iVGy  306 (351)
                        ++.|+    ++|.+++||.+++++.  .|..|++||+....                    |..+  ..+|||+||||
T Consensus       294 --~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es--~~tHAM~ivGv  367 (437)
T cd00585         294 --MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGES--LMTHAMVLTGV  367 (437)
T ss_pred             --HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCC--cCCeEEEEEEE
Confidence              44454    6788899999999997  56789999995431                    2222  46899999999


Q ss_pred             eee-CCe-eEEEEEcCCCCCCCCCcEEEEEe
Q psy3960         307 GEL-DGK-PYWQVKNSWSTYWGNQGYVLMSI  335 (351)
Q Consensus       307 g~~-~g~-~ywivkNSWG~~WG~~GY~~Is~  335 (351)
                      |.+ +|+ .||+||||||+.||++||++|+.
T Consensus       368 ~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~  398 (437)
T cd00585         368 DLDEDGKPVKWKVENSWGEKVGKKGYFVMSD  398 (437)
T ss_pred             EecCCCCcceEEEEcccCCCCCCCcceehhH
Confidence            976 476 59999999999999999999997

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.73  E-value=4.6e-17  Score=162.25  Aligned_cols=185  Identities=26%  Similarity=0.302  Sum_probs=113.2

Q ss_pred             ccccCCccCchhhhhhHHHHHHHHHHhcC-CceecCHHHHh----------------hhcCC----------CCCCCCCC
Q psy3960         148 SLLDQSVCGSCWSFGTTGAVEGAYYMKHK-KLAVLSQQALI----------------DCSWG----------YGNNGCDG  200 (351)
Q Consensus       148 ~v~dQg~cGSCWAfA~~~alE~~~~~~~g-~~~~LS~q~l~----------------dc~~~----------~~~~gC~G  200 (351)
                      +|.||.+.|.||.||+..+|+..+.++.+ +.++||+.+|.                ++...          ......+|
T Consensus        57 ~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~DG  136 (438)
T PF03051_consen   57 PVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSDG  136 (438)
T ss_dssp             S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S-
T ss_pred             CCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCCC
Confidence            78899999999999999999999998876 88999998875                22211          11345789


Q ss_pred             CchHHHHHHHHHcCCCCCCCCCCCCCCCC---------------------------------------------------
Q psy3960         201 GEDFRSYQWIMKHGLPTQDDYGPYLGQDA---------------------------------------------------  229 (351)
Q Consensus       201 G~~~~a~~~l~~~Gi~~e~~y~PY~~~~~---------------------------------------------------  229 (351)
                      |....+...++++|+++.+.| |-+....                                                   
T Consensus       137 Gqw~~~~nli~KYGvVPk~~m-pet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~~  215 (438)
T PF03051_consen  137 GQWDMVVNLIKKYGVVPKSVM-PETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAIY  215 (438)
T ss_dssp             B-HHHHHHHHHHH---BGGGS-TTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHcCcCcHhhC-CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 8543110                                                   


Q ss_pred             --c-------------------------------cc-----------cC----CCCceee-----------EeeEEEecC
Q psy3960         230 --Y-------------------------------CH-----------IA----NTTATAT-----------MTGFVNVTP  250 (351)
Q Consensus       230 --~-------------------------------C~-----------~~----~~~~~~~-----------i~~y~~v~~  250 (351)
                        .                               +.           .+    +-...+.           -..|.+++-
T Consensus       216 lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvpi  295 (438)
T PF03051_consen  216 LGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVPI  295 (438)
T ss_dssp             H---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--H
T ss_pred             cCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccCH
Confidence              0                               00           00    0001111           112344432


Q ss_pred             CC-HHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCC------------------CCCCCCCeEEEEEEEee-eC
Q psy3960         251 NS-EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN------------------NSPDGLDHAVLAVGYGE-LD  310 (351)
Q Consensus       251 ~~-~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~------------------~~~~~~~HaV~iVGyg~-~~  310 (351)
                      .. .+.+..+|.++-||.++.+|. +. ...+.||.....-.                  ......+|||+|||.+. .+
T Consensus       296 d~lk~~~i~~Lk~G~~VwfgcDV~-k~-~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~  373 (438)
T PF03051_consen  296 DELKDAAIKSLKAGYPVWFGCDVG-KF-FDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDED  373 (438)
T ss_dssp             HHHHHHHHHHHHTT--EEEEEETT-TT-EETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TT
T ss_pred             HHHHHHHHHHHHcCCcEEEeccCC-cc-ccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccC
Confidence            11 244566777788999999998 44 45678888643210                  01124689999999997 46


Q ss_pred             Ce-eEEEEEcCCCCCCCCCcEEEEEe
Q psy3960         311 GK-PYWQVKNSWSTYWGNQGYVLMSI  335 (351)
Q Consensus       311 g~-~ywivkNSWG~~WG~~GY~~Is~  335 (351)
                      |+ .+|+|+||||+..|.+||+.||.
T Consensus       374 g~p~~wkVeNSWG~~~g~kGy~~msd  399 (438)
T PF03051_consen  374 GKPVRWKVENSWGTDNGDKGYFYMSD  399 (438)
T ss_dssp             SSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred             CCeeEEEEEcCCCCCCCCCcEEEECH
Confidence            65 59999999999999999999996

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=99.18  E-value=1.2e-10  Score=110.19  Aligned_cols=182  Identities=22%  Similarity=0.288  Sum_probs=121.8

Q ss_pred             ccccCCccCchhhhhhHHHHHHHHHHhcC-CceecCHHHHhhh----------------cCC----------CCCCCCCC
Q psy3960         148 SLLDQSVCGSCWSFGTTGAVEGAYYMKHK-KLAVLSQQALIDC----------------SWG----------YGNNGCDG  200 (351)
Q Consensus       148 ~v~dQg~cGSCWAfA~~~alE~~~~~~~g-~~~~LS~q~l~dc----------------~~~----------~~~~gC~G  200 (351)
                      ++.||...|.||-||+...+...+..+-+ +.+.||+.++.--                +..          -...--+|
T Consensus        59 ~vtNQk~SGRCWmFAAlNtfRhk~~~el~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqDG  138 (444)
T COG3579          59 KVTNQKQSGRCWMFAALNTFRHKLISELKLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQDG  138 (444)
T ss_pred             ccccccccceehHHHHHHHHHHHHHHhcCcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCccccC
Confidence            67799999999999999998877766655 7789999665321                100          11334679


Q ss_pred             CchHHHHHHHHHcCCCCCCCCCCCCCCCC---------------------------------------------------
Q psy3960         201 GEDFRSYQWIMKHGLPTQDDYGPYLGQDA---------------------------------------------------  229 (351)
Q Consensus       201 G~~~~a~~~l~~~Gi~~e~~y~PY~~~~~---------------------------------------------------  229 (351)
                      |........+.++|+++.+.| |-.-...                                                   
T Consensus       139 GQwdM~v~l~eKYGvVpK~~y-pes~sSS~Sr~ln~~Ln~~LR~dAqiLR~a~~eg~~~~~v~~~kEe~l~eif~~l~~~  217 (444)
T COG3579         139 GQWDMFVSLFEKYGVVPKSVY-PESFSSSNSRELNALLNKLLRQDAQILRDALKEGADDDTVEALKEELLQEIFNFLAMT  217 (444)
T ss_pred             chHHHHHHHHHHhCCCchhhc-ccccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 8542110                                                   


Q ss_pred             ------------------------------ccccC------------------CCCceeeE-----------eeEEEecC
Q psy3960         230 ------------------------------YCHIA------------------NTTATATM-----------TGFVNVTP  250 (351)
Q Consensus       230 ------------------------------~C~~~------------------~~~~~~~i-----------~~y~~v~~  250 (351)
                                                    .|+..                  +-.+.+++           -.|.++  
T Consensus       218 lg~PP~~Fdf~YrdKd~~~h~~k~lTP~eFy~kyv~ldl~~yVslInaPtadkPygk~ytV~~LGnVvgg~~v~ylNv--  295 (444)
T COG3579         218 LGLPPEKFDFAYRDKDNKYHKEKGLTPQEFYKKYVGLDLKDYVSLINAPTADKPYGKSYTVEFLGNVVGGRAVKYLNV--  295 (444)
T ss_pred             cCCCchhcceEEeccccchhhhcCCCHHHHHHHhcCCCcccceeeccCCcCCCCCcceeehhhhccccCCceeEEecC--
Confidence                                          00000                  00111222           122222  


Q ss_pred             CCHHHHHHH----HHcCCCEEEEEEcCccccccccCcEEecCCCC--------------C----CCCCCCeEEEEEEEee
Q psy3960         251 NSEDALKLA----LAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN--------------N----SPDGLDHAVLAVGYGE  308 (351)
Q Consensus       251 ~~~~~ik~a----L~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~--------------~----~~~~~~HaV~iVGyg~  308 (351)
                       +.+.+|++    |..+-+|.++.++.  .++..+.||.....-+              .    ...-..|||+|.|.+.
T Consensus       296 -~me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~  372 (444)
T COG3579         296 -DMERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDL  372 (444)
T ss_pred             -cHHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccc
Confidence             24445443    44567999999997  6777778876532110              0    0013479999999995


Q ss_pred             e-CCee-EEEEEcCCCCCCCCCcEEEEEe
Q psy3960         309 L-DGKP-YWQVKNSWSTYWGNQGYVLMSI  335 (351)
Q Consensus       309 ~-~g~~-ywivkNSWG~~WG~~GY~~Is~  335 (351)
                      + +|.+ -|.|.||||.+=|.+|||-+|-
T Consensus       373 d~~g~p~rwkVENSWG~d~G~~GyfvaSd  401 (444)
T COG3579         373 DETGNPLRWKVENSWGKDVGKKGYFVASD  401 (444)
T ss_pred             ccCCCceeeEeecccccccCCCceEeehH
Confidence            5 4444 7999999999999999999885

>KOG4128|consensus

Probab=97.70  E-value=4e-05  Score=73.07  Aligned_cols=75  Identities=24%  Similarity=0.221  Sum_probs=58.7

Q ss_pred             ccccCCccCchhhhhhHHHHHHHHHHhcC-CceecCHHHHhh------h--------------cCC--------CCCCCC
Q psy3960         148 SLLDQSVCGSCWSFGTTGAVEGAYYMKHK-KLAVLSQQALID------C--------------SWG--------YGNNGC  198 (351)
Q Consensus       148 ~v~dQg~cGSCWAfA~~~alE~~~~~~~g-~~~~LS~q~l~d------c--------------~~~--------~~~~gC  198 (351)
                      |+.||.+.|-||-|+++..+--.+.++-+ +.+.||+.+|.-      |              ..-        -.+..-
T Consensus        64 pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~~  143 (457)
T KOG4128|consen   64 PVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPVP  143 (457)
T ss_pred             ccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCCC
Confidence            67799999999999999988766666555 678899987742      1              100        124456


Q ss_pred             CCCchHHHHHHHHHcCCCCCCCCCC
Q psy3960         199 DGGEDFRSYQWIMKHGLPTQDDYGP  223 (351)
Q Consensus       199 ~GG~~~~a~~~l~~~Gi~~e~~y~P  223 (351)
                      |||......+.++++|+-+..+| +
T Consensus       144 DGGqw~MfvNlVkKYGviPKkcy-~  167 (457)
T KOG4128|consen  144 DGGQWQMFVNLVKKYGVIPKKCY-L  167 (457)
T ss_pred             CCchHHHHHHHHHHhCCCcHHhc-c
Confidence            89999999999999999999999 5

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=97.11  E-value=0.0042  Score=51.49  Aligned_cols=126  Identities=21%  Similarity=0.232  Sum_probs=60.1

Q ss_pred             ccccC--CccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCC----C--------CCCCCCchHHHH-HHHHH
Q psy3960         148 SLLDQ--SVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYG----N--------NGCDGGEDFRSY-QWIMK  212 (351)
Q Consensus       148 ~v~dQ--g~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~----~--------~gC~GG~~~~a~-~~l~~  212 (351)
                      |...|  ..-..|+.-|++.+|+..     |+  ..++.+|.+-.....    +        .....|.....+ +++.+
T Consensus         4 p~~~Q~~~~~~~Cg~as~~mvl~~~-----g~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (144)
T PF13529_consen    4 PYYSQYDETSYGCGPASAAMVLNYY-----GK--NISQEDLADEAGTNPDGDPNTGFVGNPYYDSGYGTSPDDLARYLEK   76 (144)
T ss_dssp             -----TTT-TT-HHHHHHHHHHHHT-----T------HHHHHHHS-EE-E--TTTSEEB-SSTS-B----HHHHHHHHHH
T ss_pred             CcEEeCCCCCCcCHHHHHHHHHHHc-----CC--CCCHHHHHHHhhhccCCCCCcccccCccccCCCccccHHHHHHHHH
Confidence            44466  555679999888888765     33  578888887653211    0        001112222233 23333


Q ss_pred             cCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         213 HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       213 ~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      +|.                            ........+.+.|+++|.++.||.+.+...-...   ....+.      
T Consensus        77 ~~~----------------------------~~~~~~~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~------  119 (144)
T PF13529_consen   77 YGY----------------------------KATDTSDASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD------  119 (144)
T ss_dssp             H-T----------------------------TEEE-TTS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE------
T ss_pred             cCc----------------------------ceeeccCCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC------
Confidence            343                            0111224467899999999999999997431111   112221      


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSW  321 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSW  321 (351)
                       ....+|.|+|+||+++.   +++|..+|
T Consensus       120 -~~~~~H~vvi~Gy~~~~---~~~v~DP~  144 (144)
T PF13529_consen  120 -GTYGGHYVVIIGYDEDG---YVYVNDPW  144 (144)
T ss_dssp             -E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred             -CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence             11578999999999842   78888887

>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.27  E-value=0.053  Score=47.78  Aligned_cols=131  Identities=19%  Similarity=0.220  Sum_probs=74.7

Q ss_pred             cCCccCchhhhhhHHHHHHHHHHhc--------CCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCC
Q psy3960         151 DQSVCGSCWSFGTTGAVEGAYYMKH--------KKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYG  222 (351)
Q Consensus       151 dQg~cGSCWAfA~~~alE~~~~~~~--------g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~  222 (351)
                      -|+.-+-|-+||.+++|........        .....+|+++|..++          -.+...++|.+..|..+.    
T Consensus        18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~----------~~~~~~i~y~ks~g~~~~----   83 (175)
T PF05543_consen   18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTS----------LTPNQMIKYAKSQGRNPQ----   83 (175)
T ss_dssp             --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH------------B-HHHHHHHHHHTTEEEE----
T ss_pred             ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcC----------CCHHHHHHHHHHcCcchh----
Confidence            5899999999999998866532111        012345555554443          235677777766554321    


Q ss_pred             CCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEE
Q psy3960         223 PYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVL  302 (351)
Q Consensus       223 PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~  302 (351)
                                            +.+- -.+.+++|+.+.++-|+.+..+...       ..        + ....+|||+
T Consensus        84 ----------------------~~n~-~~s~~eV~~~~~~nk~i~i~~~~v~-------~~--------~-~~~~gHAla  124 (175)
T PF05543_consen   84 ----------------------YNNR-MPSFDEVKKLIDNNKGIAILADRVE-------QT--------N-GPHAGHALA  124 (175)
T ss_dssp             ----------------------EECS----HHHHHHHHHTT-EEEEEEEETT-------SC--------T-TB--EEEEE
T ss_pred             ----------------------HhcC-CCCHHHHHHHHHcCCCeEEEecccc-------cC--------C-CCccceeEE
Confidence                                  1110 1147899999999888888665431       11        0 115789999


Q ss_pred             EEEEeee-CCeeEEEEEcCCCCCCCCCcEEEEEecCCe
Q psy3960         303 AVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIKDNN  339 (351)
Q Consensus       303 iVGyg~~-~g~~ywivkNSWG~~WG~~GY~~Is~~~n~  339 (351)
                      ||||-.. +|.++.++=|=|     +++++-++.+.+.
T Consensus       125 vvGya~~~~g~~~y~~WNPW-----~~~~~~~sa~s~~  157 (175)
T PF05543_consen  125 VVGYAKPNNGQKTYYFWNPW-----WNDVMIQSAKSNI  157 (175)
T ss_dssp             EEEEEEETTSEEEEEEE-TT------SS-EEEETT--E
T ss_pred             EEeeeecCCCCeEEEEeCCc-----cCCcEEEecCCCc
Confidence            9999874 568999998988     4577888876553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.

>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase

Probab=90.57  E-value=0.65  Score=44.40  Aligned_cols=56  Identities=27%  Similarity=0.383  Sum_probs=38.0

Q ss_pred             HHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEc
Q psy3960         253 EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKN  319 (351)
Q Consensus       253 ~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkN  319 (351)
                      .+.|+++|.++.||.+.++++   +..|....+       ..+..+|.|+|+||++++ +.+.++-+
T Consensus        78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~-------~~~~~~H~i~v~G~d~~~-~~~~v~D~  133 (317)
T PF14399_consen   78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYY-------KKHHADHYIVVYGYDEEE-DVFYVSDP  133 (317)
T ss_pred             HHHHHHHHhCCCceEEEeccc---cCCCCcccc-------ccccCCcEEEEEEEeCCC-CEEEEEcC
Confidence            568999999988999998876   222222211       123578999999999763 34555533

>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.47  E-value=0.58  Score=41.51  Aligned_cols=53  Identities=25%  Similarity=0.271  Sum_probs=41.2

Q ss_pred             EEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCC
Q psy3960         246 VNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWS  322 (351)
Q Consensus       246 ~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG  322 (351)
                      ..++..++.+||..|.++.||.+-....+.                    ..-|+|+|+|||+    .++..-++||
T Consensus       116 ~d~tGksl~~ik~ql~kg~PV~iw~T~~~~--------------------~s~H~v~itgyDk----~n~yynDpyG  168 (195)
T COG4990         116 VDLTGKSLSDIKGQLLKGRPVVIWVTNFHS--------------------YSIHSVLITGYDK----YNIYYNDPYG  168 (195)
T ss_pred             ccCcCCcHHHHHHHHhcCCcEEEEEecccc--------------------cceeeeEeecccc----cceEeccccc
Confidence            667788999999999999999987754421                    2459999999997    4566667774

>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate

Probab=90.45  E-value=0.97  Score=41.29  Aligned_cols=64  Identities=27%  Similarity=0.434  Sum_probs=40.3

Q ss_pred             CHHHHHHHHHcCCCEEEEEEcCccccc--cccCcEEe--cCCC-CCCCCCCCeEEEEEEEeeeCCeeEEEEEc
Q psy3960         252 SEDALKLALAKHGPVSVAIDASQKSFS--FYVNGVYY--DEKC-NNSPDGLDHAVLAVGYGELDGKPYWQVKN  319 (351)
Q Consensus       252 ~~~~ik~aL~~~GPV~v~i~~~~~~f~--~y~~Giy~--~~~~-~~~~~~~~HaV~iVGyg~~~g~~ywivkN  319 (351)
                      ..++|..+|.++||+.+-++..  -..  .-+.-...  .+.| .......+|-|+|+||+...  +-++++|
T Consensus       112 s~~ei~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~--~~~~yrd  180 (212)
T PF09778_consen  112 SIQEIIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAAT--KEFEYRD  180 (212)
T ss_pred             cHHHHHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCccEEEEEEEeecCCC--CeEEEeC
Confidence            5889999999999888877654  121  00111111  1112 23345789999999999763  3366665

>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes

Probab=90.16  E-value=2  Score=37.43  Aligned_cols=39  Identities=26%  Similarity=0.297  Sum_probs=29.7

Q ss_pred             CHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeee
Q psy3960         252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGEL  309 (351)
Q Consensus       252 ~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~  309 (351)
                      ..+.++..|.++||+.+++....                   .....|+++|+|-+.+
T Consensus        97 t~e~~~~LL~~yGPLwv~~~~P~-------------------~~~~~H~~ViTGI~~d  135 (166)
T PF12385_consen   97 TAEGLANLLREYGPLWVAWEAPG-------------------DSWVAHASVITGIDGD  135 (166)
T ss_pred             CHHHHHHHHHHcCCeEEEecCCC-------------------CcceeeEEEEEeecCC
Confidence            47899999999999999965431                   1134699999998865

Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].

>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like

Probab=81.42  E-value=4.3  Score=39.16  Aligned_cols=42  Identities=26%  Similarity=0.563  Sum_probs=34.5

Q ss_pred             CCCeEEEEEEEeeeC--CeeEEEEEcCCCC--CC------------------------CCCcEEEEEecC
Q psy3960         296 GLDHAVLAVGYGELD--GKPYWQVKNSWST--YW------------------------GNQGYVLMSIKD  337 (351)
Q Consensus       296 ~~~HaV~iVGyg~~~--g~~ywivkNSWG~--~W------------------------G~~GY~~Is~~~  337 (351)
                      ..+||-.|++....+  +.....+||-||.  .|                        .++|-|||+..+
T Consensus       234 ~~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~d  303 (315)
T cd00044         234 VKGHAYSVLDVREVQEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFED  303 (315)
T ss_pred             ccCcceEEeEEEEEccCceEEEEecCCccCCCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhHH
Confidence            468999999999876  8889999999984  22                        368999999854

Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		1e-45
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		2e-45
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		2e-45
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		2e-45
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		2e-45
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		3e-45
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		3e-44
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		9e-44
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		6e-43
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		1e-42
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		1e-42
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		9e-41
3of8_A	221	Structural Basis For Reversible And Irreversible In		1e-40
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		2e-40
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		2e-40
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		3e-40
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		3e-40
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		9e-40
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		1e-39
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		1e-39
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		2e-39
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		2e-39
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		7e-39
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		2e-38
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		2e-38
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		2e-38
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		3e-38
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		3e-38
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		4e-38
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		4e-38
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		5e-38
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		1e-37
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		2e-37
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		3e-37
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		3e-37
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		3e-37
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		4e-37
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		9e-35
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		2e-33
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		2e-31
1icf_A	175	Crystal Structure Of Mhc Class Ii Associated P41 Ii		1e-30
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		7e-30
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		1e-29
1mhw_A	175	Design Of Non-covalent Inhibitors Of Human Cathepsi		2e-29
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		4e-29
2act_A	220	Crystallographic Refinement Of The Structure Of Act		4e-28
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		5e-28
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		8e-28
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		9e-28
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		2e-27
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		5e-27
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		5e-27
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		1e-26
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		1e-26
3bpm_A	243	Crystal Structure Of Falcipain-3 With Its Inhibitor		4e-26
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		5e-26
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		6e-26
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		7e-26
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		1e-25
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		1e-25
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		2e-25
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		6e-25
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		1e-23
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		3e-23
1yvb_A	241	The Plasmodium Falciparum Cysteine Protease Falcipa		3e-23
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		1e-22
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		1e-22
1ppo_A	216	Determination Of The Structure Of Papaya Protease O		1e-22
3pnr_A	240	Structure Of Pbicp-C In Complex With Falcipain-2 Le		3e-22
1meg_A	216	Crystal Structure Of A Caricain D158e Mutant In Com		4e-22
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		4e-22
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		4e-22
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		8e-22
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		2e-21
1pci_A	322	Procaricain Length = 322		2e-21
1gec_E	216	Glycyl Endopeptidase-complex With Benzyloxycarbonyl		3e-19
3ioq_A	213	Crystal Structure Of The Carica Candamarcensis Cyst		7e-19
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		2e-18
2as8_A	222	Crystal Structure Of Mature And Fully Active Der P		1e-17
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		2e-17
3rvw_A	222	Crystal Structure Of Der P 1 Complexed With Fab 4c1		3e-17
1xkg_A	312	Crystal Structure Of The Major House Dust Mite Alle		2e-16
3f5v_A	222	C2 Crystal Form Of Mite Allergen Der P 1 Length = 2		2e-16
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		3e-16
1ef7_A	242	Crystal Structure Of Human Cathepsin X Length = 242		3e-14
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		3e-14
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		2e-13
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		2e-13
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		3e-13
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		2e-12
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		3e-12
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		4e-12
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		4e-12
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		2e-11
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		6e-11
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		6e-11
1mir_A	322	Rat Procathepsin B Length = 322		6e-10
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		8e-10
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		1e-07
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		3e-07
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		4e-07
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		7e-07
1k3b_B	164	Crystal Structure Of Human Dipeptidyl Peptidase I (		3e-06
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		4e-06
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		5e-06
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		3e-05

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score =  180 bits (457), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 104 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 161
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ K+ G+ ++D Y PY+GQ+  C    T   A   G+  +   +E AL
Sbjct: 162 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 220
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GPVSVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   G  +W 
Sbjct: 221 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 278
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 279 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 7   VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ K+ G+ ++D Y PY+GQ+  C    T   A   G+  +   +E AL
Sbjct: 65  CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 123
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GPVSVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   G  +W 
Sbjct: 124 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 181
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 182 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 217

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 5   VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 62
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ K+ G+ ++D Y PY+GQ+  C    T   A   G+  +   +E AL
Sbjct: 63  CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 121
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GPVSVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   G  +W 
Sbjct: 122 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 179
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 180 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 4   VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 61
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ K+ G+ ++D Y PY+GQ+  C    T   A   G+  +   +E AL
Sbjct: 62  CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 120
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GPVSVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   G  +W 
Sbjct: 121 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 178
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 179 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 214

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 3   VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 60
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ K+ G+ ++D Y PY+GQ+  C    T   A   G+  +   +E AL
Sbjct: 61  CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 119
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GPVSVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   G  +W 
Sbjct: 120 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 177
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 178 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 213

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 131/216 (60%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           + Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 5   IDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 62
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ ++ G+ ++D Y PY+GQD  C    T   A   G+  +   +E AL
Sbjct: 63  CGGGYMTNAFQYVQRNRGIDSEDAY-PYVGQDESCMYNPTGKAAKCRGYREIPEGNEKAL 121
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GPVSVAIDAS  SF FY  GVYYDE C  S D L+HAVLAVGYG   G  +W 
Sbjct: 122 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDENC--SSDNLNHAVLAVGYGIQKGNKHWI 179
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 180 IKNSWGESWGNKGYILMARNKNNACGIANLASFPKM 215

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 130/216 (60%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V Y  KGY   + +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+G
Sbjct: 5   VDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 62
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ K+ G+ ++D Y PY+GQ+  C    T   A   G+  +   +E AL
Sbjct: 63  CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 121
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A+ GPVSVAIDAS  SF FY  GVYYDE CN+  D L+HAVLAVGYGE  G  +W 
Sbjct: 122 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGESKGNKHWI 179
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WG  GY+ M+   NN CG+    ++  M
Sbjct: 180 IKNSWGENWGMGGYIKMARNKNNACGIANLASFPKM 215

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score =  174 bits (440), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 129/217 (59%), Gaps = 10/217 (4%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGSCW+F  TGA+EG  + K  KL  LS+Q L+DCS   GN G
Sbjct: 5   VDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG   R++Q++ ++ GL +++ Y PY+  D  C      + A  TGF  V P  E AL
Sbjct: 65  CNGGFMARAFQYVKENGGLDSEESY-PYVAVDEICKYRPENSVAQDTGFTVVAPGKEKAL 123
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVA+DA   SF FY +G+Y++  C  S   LDH VL VGYG      D  
Sbjct: 124 MKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDC--SSKNLDHGVLVVGYGFEGANSDNS 181
Query: 313 PYWQVKNSWSTYWGNQGYV-LMSIKDNNCGVMTAPTY 348
            YW VKNSW   WG+ GYV +   K+N+CG+ TA +Y
Sbjct: 182 KYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASY 218

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score =  171 bits (433), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 7/218 (3%)
Query: 136 AIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGN 195
           A  V +     + + DQ  CGS WSF TTGAVEG   ++  +L  LS+Q LIDCS  YGN
Sbjct: 117 AASVDWRSNAVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGN 176
Query: 196 NGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDA 255
            GCDGG    ++ +I  +G+ ++  Y PY  Q  YC   ++ +  T++G+ ++    E++
Sbjct: 177 AGCDGGWMDSAFSYIHDYGIMSESAY-PYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENS 235
Query: 256 LKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYW 315
           L  A+ + GPV+VAIDA+ +   FY  G++YD+ CN S   L+H VL VGYG  +G+ YW
Sbjct: 236 LADAVGQAGPVAVAIDATDE-LQFYSGGLFYDQTCNQSD--LNHGVLVVGYGSDNGQDYW 292
Query: 316 QVKNSWSTYWGNQGYVLMSIKD--NNCGVMTAPTYVTM 351
            +KNSW + WG  GY    +++  NNCG+ TA +Y  +
Sbjct: 293 ILKNSWGSGWGESGY-WRQVRNYGNNCGIATAASYPAL 329

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 127/216 (58%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           + Y  KGY   + +Q  CGSCW+F + GA+EG        L  L+ Q L+DC     N+G
Sbjct: 5   IDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCV--SENDG 62
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C GG    ++Q++ ++ G+ ++D Y PY+GQD  C    T   A   G+  +   +E AL
Sbjct: 63  CGGGYMTNAFQYVQRNRGIDSEDAY-PYVGQDESCMYNPTGKAAKCRGYREIPEGNEAAL 121
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
           K A+A  GPVSVAIDAS  SF FY  GVYYDE C  S D L+HAVLAVGYG   G  +W 
Sbjct: 122 KRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENC--SSDALNHAVLAVGYGIQAGNKHWI 179
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
           +KNSW   WGN GY+LM+   NN CG+    ++  M
Sbjct: 180 IKNSWGESWGNAGYILMARNKNNACGIANLASFPKM 215

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 128/217 (58%), Gaps = 10/217 (4%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGS W+F  TGA+EG  + K  KL  LS+Q L+DCS   GN G
Sbjct: 5   VDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG   R++Q++ ++ GL +++ Y PY+  D  C      + A  TGF  V P  E AL
Sbjct: 65  CNGGFMARAFQYVKENGGLDSEESY-PYVAVDEICKYRPENSVAQDTGFTVVAPGKEKAL 123
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVA+DA   SF FY +G+Y++  C  S   LDH VL VGYG      D  
Sbjct: 124 MKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDC--SSKNLDHGVLVVGYGFEGANSDNS 181
Query: 313 PYWQVKNSWSTYWGNQGYV-LMSIKDNNCGVMTAPTY 348
            YW VKNSW   WG+ GYV +   K+N+CG+ TA +Y
Sbjct: 182 KYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASY 218

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGSCW+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 5   VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A  TGFV++ P  E AL
Sbjct: 65  CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D  
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 180
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score =  164 bits (414), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGSCW+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 6   VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 65
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A  TGFV++ P  E AL
Sbjct: 66  CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 123
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D  
Sbjct: 124 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 181
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 182 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGSCW+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 43  VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 102
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A   GFV++ P  E AL
Sbjct: 103 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKAL 160
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D  
Sbjct: 161 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 218
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 219 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 258

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 3/199 (1%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F TTGA+E A  +   K+  L++Q L+DC+  + N+GC GG   +++++I
Sbjct: 19  NQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYI 78
Query: 211 M-KHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
               G+  +D Y PY GQD +C      A A +    N+T N E+A+  A+A + PVS A
Sbjct: 79  RYNKGIMGEDTY-PYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFA 137
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
            + +   F  Y  G+Y    C+ +PD ++HAVLAVGYGE +G PYW VKNSW   WG  G
Sbjct: 138 FEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNG 196
Query: 330 YVLMSIKDNNCGVMTAPTY 348
           Y L+    N CG+    +Y
Sbjct: 197 YFLIERGKNMCGLAACASY 215

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGS W+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 97  VDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEG 156
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A   GFV++ P  E AL
Sbjct: 157 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKAL 214
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E DG 
Sbjct: 215 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDGN 272
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 273 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 312

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGSCW+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 5   VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A   GFV++ P  E AL
Sbjct: 65  CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D  
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 180
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score =  160 bits (406), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 10/206 (4%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F TTGA+EGA+  K  KL  LS+Q L+DCS   GN  C GGE   ++Q++
Sbjct: 24  DQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYV 83
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           +  G    +D  PYL +D  C   +      + GF +V   SE A+K ALAK  PVS+AI
Sbjct: 84  LDSGGICSEDAYPYLARDEECRAQSCEKVVKILGFKDVPRRSEAAMKAALAKS-PVSIAI 142
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQ 328
           +A Q  F FY  GV +D  C      LDH VL VGYG  +   K +W +KNSW T WG  
Sbjct: 143 EADQMPFQFYHEGV-FDASCGTD---LDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRD 198
Query: 329 GYVLMSI---KDNNCGVMTAPTYVTM 351
           GY+ M++   ++  CG++   ++  M
Sbjct: 199 GYMYMAMHKGEEGQCGLLLDASFPVM 224

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGS W+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 5   VDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A  TGFV++ P  E AL
Sbjct: 65  CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D  
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 180
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGS W+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 6   VDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 65
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A  TGFV++ P  E AL
Sbjct: 66  CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 123
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D  
Sbjct: 124 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 181
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 182 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGS W+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 5   VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A  TGFV++ P  E AL
Sbjct: 65  CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D  
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 180
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGS W+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 101 VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 160
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A   GFV++ P  E AL
Sbjct: 161 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKAL 218
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D  
Sbjct: 219 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 276
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 277 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score =  157 bits (398), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGS W+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 5   VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A   GFV++ P  E AL
Sbjct: 65  CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D  
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDDN 180
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+CW+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 19  QGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 79  IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+CW+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 22  QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 81
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 82  IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 141
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 142 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 198
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 199 IRMARNKGNHCGIASFPSY 217

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+CW+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 20  QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 79
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 80  IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 196
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 197 IRMARNKGNHCGIASFPSY 215

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+CW+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 19  QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 79  IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+CW+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 20  QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 79
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 80  IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 196
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 197 IRMARNKGNHCGIASFPSY 215

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score =  155 bits (392), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+CW+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 19  QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 79  IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score =  155 bits (391), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWG-YGNNGCDGGEDFRSYQWI 210
           Q  CG+CW+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 19  QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT   +  +    ED LK A+A  GPVSV +
Sbjct: 79  IDNKGIDSDASYPYKAMDQKCQYDSAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score =  155 bits (391), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+CW+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 19  QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT   +  +    ED LK A+A  GPVSV +
Sbjct: 79  IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+ W+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 117 QGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 176
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 177 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 236
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 237 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 293
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 294 IRMARNKGNHCGIASFPSY 312

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 119/218 (54%), Gaps = 8/218 (3%)
Query: 131 KASKDAIP--VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALI 187
           +A+  A+P  + +   GY   + DQ  CGS W+F TTG +EG Y    +     S+Q L+
Sbjct: 86  EANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLV 145
Query: 188 DCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVN 247
           DCS  +GNNGC GG    +YQ++ + GL T+  Y PY   +  C        A +TGF  
Sbjct: 146 DCSRPWGNNGCGGGLMENAYQYLKQFGLETESSY-PYTAVEGQCRYNKQLGVAKVTGFYT 204
Query: 248 VTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG 307
           V   SE  LK  +   GP +VA+D  +  F  Y +G+Y  + C  SP  ++HAVLAVGYG
Sbjct: 205 VHSGSEVELKNLVGAEGPAAVAVDV-ESDFMMYRSGIYQSQTC--SPLRVNHAVLAVGYG 261
Query: 308 ELDGKPYWQVKNSWSTYWGNQGYVLM-SIKDNNCGVMT 344
              G  YW VKNSW   WG +GY+ M   + N CG+ +
Sbjct: 262 TQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIAS 299

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+ W+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 20  QGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 79
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 80  IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 196
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 197 IRMARNKGNHCGIASFPSY 215

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+ W+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 21  QGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 80
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 81  IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 140
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 141 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 197
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 198 IRMARNKGNHCGIASFPSY 216

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+ W+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 19  QGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 79  IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
           Q  CG+ W+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+I
Sbjct: 19  QGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV +
Sbjct: 79  IDNKGIDSDASYPYKAMDLKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
           + M+  K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score =  144 bits (362), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/217 (40%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CG+ ++F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 5   VDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A   GFV++ P  E AL
Sbjct: 65  CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDVGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGEL-DGKPYW 315
             A+A  GP+SVAIDA  +SF FY  G+Y+   C++S   L+HA+L VGYG + + + YW
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSS--LNHAMLVVGYGFISNNQKYW 180
Query: 316 QVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
            VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 181 LVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/217 (41%), Positives = 116/217 (53%), Gaps = 13/217 (5%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KG   S+ DQ  CGSCW+F T  AVEG   +K  KL  LS+Q L+DC     N G
Sbjct: 6   VDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ-NQG 64
Query: 198 CDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATA-TMTGFVNVTPNSEDAL 256
           C+GG    ++++I + G  T +   PY   D  C ++   A A ++ G  NV  N E+AL
Sbjct: 65  CNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENAL 124
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYW 315
             A+A   PVSVAIDA    F FY  GV+    C      LDH V  VGYG  +DG  YW
Sbjct: 125 LKAVANQ-PVSVAIDAGGSDFQFYSEGVFTG-SCGTE---LDHGVAIVGYGTTIDGTKYW 179
Query: 316 QVKNSWSTYWGNQGYVLM----SIKDNNCGVMTAPTY 348
            VKNSW   WG +GY+ M    S K+  CG+    +Y
Sbjct: 180 TVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/222 (40%), Positives = 119/222 (53%), Gaps = 20/222 (9%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KG    + DQ  CGSCW+F T  +VEG   ++   L  LS+Q LIDC     N+G
Sbjct: 8   VDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA-DNDG 66
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIA----NTTATATMTGFVNVTPNS 252
           C GG    ++++I  + GL T+  Y PY      C++A    N+     + G  +V  NS
Sbjct: 67  CQGGLMDNAFEYIKNNGGLITEAAY-PYRAARGTCNVARAAQNSPVVVHIDGHQDVPANS 125
Query: 253 EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDG 311
           E+ L  A+A   PVSVA++AS K+F FY  GV+  E C      LDH V  VGYG   DG
Sbjct: 126 EEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGE-CGTE---LDHGVAVVGYGVAEDG 180
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDNN-----CGVMTAPTY 348
           K YW VKNSW   WG QGY+ +  KD+      CG+    +Y
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVE-KDSGASGGLCGIAMEASY 221

>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175

Iteration: 1
 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 103/171 (60%), Gaps = 6/171 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGSCW+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 5   VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A  TGFV++ P  E AL
Sbjct: 65  CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG 307
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYG 171

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score =  127 bits (320), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 8/203 (3%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           + +  KG   S+ DQ  CG CW+FG TGA+EG   +   +L  +S+Q ++DC        
Sbjct: 5   IDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCD--TXXXX 62
Query: 198 CDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALK 257
             GG+   +++W++ +G    D   PY G D  C + N    A + G+ NV PNS  AL 
Sbjct: 63  XXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDL-NKPIAARIDGYTNV-PNSSSALL 120
Query: 258 LALAKHGPVSVAIDASQKSFSFYVN-GVYYDEKCNNSPDGLDHAVLAVGYGE-LDGKPYW 315
            A+AK  PVSV I  S  SF  Y   G++    C++ P  +DH VL VGYG       YW
Sbjct: 121 DAVAKQ-PVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYW 179
Query: 316 QVKNSWSTYWGNQGYVLMSIKDN 338
            VKNSW T WG  GY+L+    N
Sbjct: 180 IVKNSWGTEWGIDGYILIRRNTN 202

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 118/220 (53%), Gaps = 19/220 (8%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KG  NS+ +Q  CGSCW+F    AVE    ++  +L  LS+Q L+DC     ++G
Sbjct: 5   VDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD--TASHG 62
Query: 198 CDGGEDFRSYQWIMKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q+I+ +G + TQ +Y PY      C         ++ GF  VT N+E AL
Sbjct: 63  CNGGWMNNAFQYIITNGGIDTQQNY-PYSAVQGSCKPYRLRVV-SINGFQRVTRNNESAL 120
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGL--DHAVLAVGYGELDGKPY 314
           + A+A   PVSV ++A+   F  Y +G++        P G   +H V+ VGYG   GK Y
Sbjct: 121 QSAVASQ-PVSVTVEAAGAPFQHYSSGIF------TGPCGTAQNHGVVIVGYGTQSGKNY 173
Query: 315 WQVKNSWSTYWGNQGYVLM----SIKDNNCGVMTAPTYVT 350
           W V+NSW   WGNQGY+ M    +     CG+   P+Y T
Sbjct: 174 WIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 6/171 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  KGY   + +Q  CGS W+F  TGA+EG  + K  +L  LS+Q L+DCS   GN G
Sbjct: 5   VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
           C+GG    ++Q++  + GL +++ Y PY   +  C      + A  TGFV++ P  E AL
Sbjct: 65  CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG 307
             A+A  GP+SVAIDA  +SF FY  G+Y++  C  S + +DH VL VGYG
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYG 171

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 110/204 (53%), Gaps = 11/204 (5%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           + +Q  CGSCW+F T  AVEG   +    L  LS+Q L+DC+    N+GC GG    ++Q
Sbjct: 18  VKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT--TANHGCRGGWMNPAFQ 75
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
           +I+ +G    ++  PY GQD  C+        ++  + NV  ++E +L+ A+A   PVSV
Sbjct: 76  FIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQ-PVSV 134
Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
            +DA+ + F  Y +G++    CN S    +HA+  VGYG  + K +W VKNSW   WG  
Sbjct: 135 TMDAAGRDFQLYRSGIFTG-SCNIS---ANHALTVVGYGTENDKDFWIVKNSWGKNWGES 190
Query: 329 GYVL----MSIKDNNCGVMTAPTY 348
           GY+     +   D  CG+    +Y
Sbjct: 191 GYIRAERNIENPDGKCGITRFASY 214

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 116/222 (52%), Gaps = 18/222 (8%)
Query: 137 IPVRYEMKGYNSLLD---QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGY 193
           +P   + +   +++D   Q  CG  W+F     VEG   +    L  LS+Q LIDC    
Sbjct: 1   LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 194 GNNGCDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIA-NTTATATMTGFVNVTPN 251
              GCDGG     +Q+I+   G+ T+++Y PY  QD  C +A       T+  + NV  N
Sbjct: 61  NTRGCDGGYITDGFQFIINDGGINTEENY-PYTAQDGDCDVALQDQKYVTIDTYENVPYN 119
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
           +E AL+ A+    PVSVA+DA+  +F  Y +G++    C  +   +DHA++ VGYG   G
Sbjct: 120 NEWALQTAVTYQ-PVSVALDAAGDAFKQYASGIFTG-PCGTA---VDHAIVIVGYGTEGG 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 348
             YW VKNSW T WG +GY  M I  N      CG+ T P+Y
Sbjct: 175 VDYWIVKNSWDTTWGEEGY--MRILRNVGGAGTCGIATMPSY 214

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score =  121 bits (304), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 117/222 (52%), Gaps = 18/222 (8%)
Query: 137 IPVRYEMKGYNSLLD---QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGY 193
           +P   + +   +++D   Q  CG CW+F     VEG   +    L  LS+Q LIDC    
Sbjct: 1   LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 194 GNNGCDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHI-ANTTATATMTGFVNVTPN 251
              GC+GG     +Q+I+ + G+ T+++Y PY  QD  C++        T+  + NV  N
Sbjct: 61  NTRGCNGGYITDGFQFIINNGGINTEENY-PYTAQDGECNVDLQNEKYVTIDTYENVPYN 119
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
           +E AL+ A+    PVSVA+DA+  +F  Y +G++    C  +   +DHAV  VGYG   G
Sbjct: 120 NEWALQTAVTYQ-PVSVALDAAGDAFKQYSSGIFTG-PCGTA---IDHAVTIVGYGTEGG 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 348
             YW VKNSW T WG +GY  M I  N      CG+ T P+Y
Sbjct: 175 IDYWIVKNSWDTTWGEEGY--MRILRNVGGAGTCGIATMPSY 214

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  +G   ++ DQ  CGSCW+F   G VE  +++    L  LS+Q L+ C     ++G
Sbjct: 5   VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD--KTDSG 62
Query: 198 CDGGEDFRSYQWIMKH---GLPTQDDYGPYL---GQDAYCHIANTTATATMTGFVNVTPN 251
           C GG    +++WI++     + T+D Y PY    G    C  +  T  AT+TG V + P 
Sbjct: 63  CSGGLMNNAFEWIVQENNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVEL-PQ 120
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
            E  +   LA +GPV+VA+DAS  S+  Y  GV     C +  + LDH VL VGY +   
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVS--EALDHGVLLVGYNDSAA 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDNNC 340
            PYW +KNSW+T WG +GY+ ++   N C
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score =  120 bits (302), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 114/209 (54%), Gaps = 19/209 (9%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           + DQ  CGSCW+F T  AVEG   +    L  LS+Q L+DC       GCDGG     +Q
Sbjct: 16  IKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQ 75
Query: 209 WIMKH-GLPTQDDYGPYLGQDAYCHI-ANTTATATMTGFVNVTPNSEDALKLALAKHGPV 266
           +I+ + G+ T+ +Y PY  ++  C++        ++  + NV  N+E AL+ A+A + PV
Sbjct: 76  FIINNGGINTEANY-PYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVA-YQPV 133
Query: 267 SVAIDASQKSFSFYVNGVYYDEKCNNSPDG--LDHAVLAVGYGELDGKPYWQVKNSWSTY 324
           SVA++A+  +F  Y +G++        P G  +DHAV  VGYG   G  YW VKNSW T 
Sbjct: 134 SVALEAAGYNFQHYSSGIF------TGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTT 187
Query: 325 WGNQGYVLMSIKDN-----NCGVMTAPTY 348
           WG +GY  M I+ N      CG+    +Y
Sbjct: 188 WGEEGY--MRIQRNVGGVGQCGIAKKASY 214

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  +G   ++ DQ  CGSCW+F   G VE  +++    L  LS+Q L+ C     ++G
Sbjct: 5   VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD--KTDSG 62
Query: 198 CDGGEDFRSYQWIMKH---GLPTQDDYGPYL---GQDAYCHIANTTATATMTGFVNVTPN 251
           C GG    +++WI++     + T+D Y PY    G    C  +  T  AT+TG V + P 
Sbjct: 63  CSGGLMNNAFEWIVQENNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVEL-PQ 120
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
            E  +   LA +GPV+VA+DAS  S+  Y  GV     C +  + LDH VL VGY +   
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVS--EQLDHGVLLVGYNDSAA 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDNNC 340
            PYW +KNSW+T WG +GY+ ++   N C
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  +G   ++ DQ  CGSCW+F   G VE  +++    L  L++Q L+ C     ++G
Sbjct: 5   VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD--KTDSG 62
Query: 198 CDGGEDFRSYQWIMKH---GLPTQDDYGPYL---GQDAYCHIANTTATATMTGFVNVTPN 251
           C GG    +++WI++     + T+D Y PY    G    C  +  T  AT+TG V + P 
Sbjct: 63  CSGGLMNNAFEWIVQENNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVEL-PQ 120
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
            E  +   LA +GPV+VA+DAS  S+  Y  GV     C +  + LDH VL VGY +   
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVS--EQLDHGVLLVGYNDGAA 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDNNC 340
            PYW +KNSW+T WG +GY+ ++   N C
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
           V +  +G   ++ DQ  CGSCW+F   G VE  +++    L  L++Q L+ C     ++G
Sbjct: 5   VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD--KTDSG 62
Query: 198 CDGGEDFRSYQWIMKH---GLPTQDDYGPYL---GQDAYCHIANTTATATMTGFVNVTPN 251
           C GG    +++WI++     + T+D Y PY    G    C  +  T  AT+TG V + P 
Sbjct: 63  CSGGLMNNAFEWIVQENNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVEL-PQ 120
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
            E  +   LA +GPV+VA+DAS  S+  Y  GV     C +  + LDH VL VGY +   
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVS--EQLDHGVLLVGYNDGAA 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDNNC 340
            PYW +KNSW+T WG +GY+ ++   N C
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 113/207 (54%), Gaps = 15/207 (7%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           + DQ  CGS W+F T  AVEG   +    L  LS+Q L+DC       GCDGG     +Q
Sbjct: 16  IKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQ 75
Query: 209 WIMKH-GLPTQDDYGPYLGQDAYCHI-ANTTATATMTGFVNVTPNSEDALKLALAKHGPV 266
           +I+ + G+ T+ +Y PY  ++  C++        ++  + NV  N+E AL+ A+A + PV
Sbjct: 76  FIINNGGINTEANY-PYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVA-YQPV 133
Query: 267 SVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWG 326
           SVA++A+  +F  Y +G++    C  +   +DHAV  VGYG   G  YW VKNSW T WG
Sbjct: 134 SVALEAAGYNFQHYSSGIFTG-PCGTA---VDHAVTIVGYGTEGGIDYWIVKNSWGTTWG 189
Query: 327 NQGYVLMSIKDN-----NCGVMTAPTY 348
            +GY  M I+ N      CG+    +Y
Sbjct: 190 EEGY--MRIQRNVGGVGQCGIAKKASY 214

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 106/207 (51%), Gaps = 21/207 (10%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           L +Q  CGSCW+F T   VE    ++   L  LS+Q L+DCS    N+GC GG   R+YQ
Sbjct: 16  LKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCS--KKNHGCKGGYFDRAYQ 73
Query: 209 WIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVS 267
           +I+ + G+ T+ +Y PY      C  A       + G   V   +E+ALK A+A   P  
Sbjct: 74  YIIANGGIDTEANY-PYKAFQGPCRAAKK--VVRIDGCKGVPQCNENALKNAVASQ-PSV 129
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDG--LDHAVLAVGYGELDGKPYWQVKNSWSTYW 325
           VAIDAS K F  Y  G++        P G  L+H V+ VGY    GK YW V+NSW  +W
Sbjct: 130 VAIDASSKQFQHYKGGIF------TGPCGTKLNHGVVIVGY----GKDYWIVRNSWGRHW 179
Query: 326 GNQGYVLMSIKDNN--CGVMTAPTYVT 350
           G QGY  M        CG+   P Y T
Sbjct: 180 GEQGYTRMKRVGGCGLCGIARLPFYPT 206

>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243

Iteration: 1
 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 23/206 (11%)
Query: 145 GYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDF 204
           G   + DQ++CGSCW+F + G+VE  Y ++ K L + S+Q L+DCS    NNGC GG   
Sbjct: 31  GVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCS--VKNNGCYGGYIT 88
Query: 205 RSYQWIMK-HGLPTQDDYGPYLGQ-DAYCHIANTTATATMTGFVNVTPNSEDALKLALAK 262
            ++  ++   GL +QDDY PY+      C++       T+  +V++    +D  K AL  
Sbjct: 89  NAFDDMIDLGGLCSQDDY-PYVSNLPETCNLKRCNERYTIKSYVSIP---DDKFKEALRY 144
Query: 263 HGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELD------GKP--- 313
            GP+S++I AS   F+FY  G +YD +C  +P   +HAV+ VGYG  D      G+    
Sbjct: 145 LGPISISIAASD-DFAFYRGG-FYDGECGAAP---NHAVILVGYGMKDIYNEDTGRMEKF 199
Query: 314 -YWQVKNSWSTYWGNQGYVLMSIKDN 338
            Y+ +KNSW + WG  GY+ +   +N
Sbjct: 200 YYYIIKNSWGSDWGEGGYINLETDEN 225

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score =  115 bits (287), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 107/205 (52%), Gaps = 21/205 (10%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F T   VE    ++   L  LS+Q L+DC+    N+GC GG    +YQ+I
Sbjct: 18  NQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCN--KKNHGCKGGAFVYAYQYI 75
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           + + G+ T+ +Y PY      C  A       + G+  V   +E+ALK A+A   P  VA
Sbjct: 76  IDNGGIDTEANY-PYKAVQGPCRAAKK--VVRIDGYKGVPHCNENALKKAVASQ-PSVVA 131
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDG--LDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
           IDAS K F  Y +G++      + P G  L+H V+ VGY     K YW V+NSW  YWG 
Sbjct: 132 IDASSKQFQHYKSGIF------SGPCGTKLNHGVVIVGY----WKDYWIVRNSWGRYWGE 181
Query: 328 QGYVLMSIKDNN--CGVMTAPTYVT 350
           QGY+ M        CG+   P Y T
Sbjct: 182 QGYIRMKRVGGCGLCGIARLPYYPT 206

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 16/196 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F T G +EG + +    L  LS+Q L+ C     + GC GG    ++ WI
Sbjct: 18  DQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD--TIDFGCGGGLMDNAFNWI 75
Query: 211 MKHG---LPTQDDYGPYL---GQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHG 264
           +      + T+  Y PY+   G+   C +      A +T  V++ P  EDA+   LA++G
Sbjct: 76  VNSNGGNVFTEASY-PYVSGNGEQPQCQMNGHEIGAAITDHVDL-PQDEDAIAAYLAENG 133
Query: 265 PVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTY 324
           P+++A+DA+  SF  Y  G+     C  + + LDH VL VGY +    PYW +KNSWS  
Sbjct: 134 PLAIAVDAT--SFMDYNGGIL--TSC--TSEQLDHGVLLVGYNDASNPPYWIIKNSWSNM 187
Query: 325 WGNQGYVLMSIKDNNC 340
           WG  GY+ +    N C
Sbjct: 188 WGEDGYIRIEKGTNQC 203

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 103/195 (52%), Gaps = 7/195 (3%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ +CGSCW+F  TG VEG +++    L  LS+Q L+DC     +  C GG    +Y  I
Sbjct: 18  DQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD--KMDKACMGGLPSNAYSAI 75
Query: 211 MK-HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
               GL T+DDY  Y G    C  +   A   +   V ++ N E  L   LAK GP+SVA
Sbjct: 76  KNLGGLETEDDY-SYQGHMQSCQFSAEKAKVYIQDSVELSQN-EQKLAAWLAKRGPISVA 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           I+A      FY +G+    +   SP  +DHAVL VGYG+    P+W +KNSW T WG +G
Sbjct: 134 INAF--GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKG 191
Query: 330 YVLMSIKDNNCGVMT 344
           Y  +      CGV T
Sbjct: 192 YYYLHRGSGACGVNT 206

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 17/202 (8%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           + +Q+ CGSCW+F T   +EG   +   +L  LS+Q L+DC     ++GCDGG    S Q
Sbjct: 16  VKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCE--RRSHGCDGGYQTTSLQ 73
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATAT-MTGFVNVTPNSEDALKLALAKHGPVS 267
           +++ +G+ T+ +Y PY  +   C   +       +TG+  V  N E +L  A+A   PVS
Sbjct: 74  YVVDNGVHTEREY-PYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQ-PVS 131
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
           V  D+  + F FY  G+Y      N+    DHAV AVGY    GK Y  +KNSW   WG 
Sbjct: 132 VVTDSRGRGFQFYKGGIYEGPCGTNT----DHAVTAVGY----GKTYLLLKNSWGPNWGE 183
Query: 328 QGYVLMSIKDNN----CGVMTA 345
           +GY+ +          CGV T+
Sbjct: 184 KGYIRIKRASGRSKGTCGVYTS 205

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 106/208 (50%), Gaps = 17/208 (8%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM 211
           Q  CGS W+F  TGA+E A+ +    L  LS+Q LIDC     + GC  G  ++S++W++
Sbjct: 20  QGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCV--DESEGCYNGWHYQSFEWVV 77
Query: 212 KHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGF-VNVTPNSEDALKL-----ALAKHG 264
           KHG + ++ DY PY  +D  C         T+  + V +  N     +      +     
Sbjct: 78  KHGGIASEADY-PYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQ 136
Query: 265 PVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTY 324
           P+SV+IDA  K F FY  G+Y    C+ SP G++H VL VGYG  DG  YW  KNSW   
Sbjct: 137 PISVSIDA--KDFHFYSGGIYDGGNCS-SPYGINHFVLIVGYGSEDGVDYWIAKNSWGED 193
Query: 325 WGNQGYVLMSIKDNN----CGVMTAPTY 348
           WG  GY+ +     N    CG+    +Y
Sbjct: 194 WGIDGYIRIQRNTGNLLGVCGMNYFASY 221

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 101/203 (49%), Gaps = 13/203 (6%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGS W+F T   VEG   +    L  LS+Q L+DC     + GC GG    S Q++
Sbjct: 18  NQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCD--KHSYGCKGGYQTTSLQYV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTA-TATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
             +G+ T   Y PY  +   C   +       +TG+  V  N E +   ALA   P+SV 
Sbjct: 76  ANNGVHTSKVY-PYQAKQYKCRATDKPGPKVKITGYKRVPSNXETSFLGALANQ-PLSVL 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           ++A  K F  Y +GV+ D  C      LDHAV AVGYG  DGK Y  +KNSW   WG +G
Sbjct: 134 VEAGGKPFQLYKSGVF-DGPCGTK---LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKG 189
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
           Y+ +  +  N    CGV  +  Y
Sbjct: 190 YMRLKRQSGNSQGTCGVYKSSYY 212

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 11/203 (5%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKK--LAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           +Q  CGS W+F +TGA+E    + +     + +S+Q L+DC       GC GG    ++ 
Sbjct: 133 NQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCV--PNALGCSGGWMNDAFT 190
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
           ++ ++G    +   PY   D  CH       A ++G+V ++   E+ L   +A  GPV+V
Sbjct: 191 YVAQNGGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAV 250
Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
           A DA    F  Y  GVYY+  C  +     HAVL VGYG  +G+ YW VKNSW   WG  
Sbjct: 251 AFDADDP-FGSYSGGVYYNPTCETNK--FTHAVLIVGYGNENGQDYWLVKNSWGDGWGLD 307
Query: 329 GYVLMSIKDNN----CGVMTAPT 347
           GY  ++   NN     GV + PT
Sbjct: 308 GYFKIARNANNHCGIAGVASVPT 330

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 105/205 (51%), Gaps = 21/205 (10%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F T   VE    ++   L  LS+Q L+DC     N+GC GG    +YQ+I
Sbjct: 18  NQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCD--KKNHGCLGGAFVFAYQYI 75
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           + + G+ TQ +Y PY      C  A  +   ++ G+  V   +E ALK A+A   P +VA
Sbjct: 76  INNGGIDTQANY-PYKAVQGPCQAA--SKVVSIDGYNGVPFCNEXALKQAVAVQ-PSTVA 131
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDG--LDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
           IDAS   F  Y +G++      + P G  L+H V  VGY       YW V+NSW  YWG 
Sbjct: 132 IDASSAQFQQYSSGIF------SGPCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGE 181
Query: 328 QGYVLMSIKDNN--CGVMTAPTYVT 350
           +GY+ M        CG+   P Y T
Sbjct: 182 KGYIRMLRVGGCGLCGIARLPYYPT 206

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F     +EG   ++   L   S+Q L+DC     + GC+GG  + + Q +
Sbjct: 18  NQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
            ++G+  ++ Y PY G   YC        A  T G   V P +E AL  ++A   PVSV 
Sbjct: 76  AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           ++A+ K F  Y  G++    C N    +DHAV AVGY    G  Y  +KNSW T WG  G
Sbjct: 134 LEAAGKDFQLYRGGIFVG-PCGNK---VDHAVAAVGY----GPNYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
           Y+ +     N    CG+ T+  Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 25/211 (11%)
Query: 145 GYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDF 204
           G   + DQ  CGSCW+F + G+VE  Y ++  KL  LS+Q L+DCS  + N GC+GG   
Sbjct: 29  GVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCS--FKNYGCNGGLIN 86
Query: 205 RSYQWIMKHGLPTQDDYGPYLGQDA--YCHIANTTATATMTGFVNVTPNSEDALKLALAK 262
            +++ +++ G    D   PY+  DA   C+I   T    +  +++V  N    LK AL  
Sbjct: 87  NAFEDMIELGGICPDGDYPYV-SDAPNLCNIDRCTEKYGIKNYLSVPDNK---LKEALRF 142
Query: 263 HGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----------ELDGK 312
            GP+S+++ A    F+FY  G+ +D +C    D L+HAV+ VG+G          + +  
Sbjct: 143 LGPISISV-AVSDDFAFYKEGI-FDGECG---DQLNHAVMLVGFGMKEIVNPLTKKGEKH 197
Query: 313 PYWQVKNSWSTYWGNQGYVLMSIKDNNCGVM 343
            Y+ +KNSW   WG +G++  +I+ +  G+M
Sbjct: 198 YYYIIKNSWGQQWGERGFI--NIETDESGLM 226

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F     +EG   ++   L   S+Q L+DC     + GC+GG  + + Q +
Sbjct: 18  NQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
            ++G+  ++ Y PY G   YC        A  T G   V P ++ AL  ++A   PVSV 
Sbjct: 76  AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           + A+ K F  Y  G++    C N    +DHAV AVGYG      Y  +KNSW T WG  G
Sbjct: 134 LQAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGP----NYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
           Y+ +     N    CG+ T+  Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F     +EG   ++   L   S+Q L+DC     + GC+GG  + + Q +
Sbjct: 18  NQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
            ++G+  ++ Y PY G   YC        A  T G   V P ++ AL  ++A   PVSV 
Sbjct: 76  AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           + A+ K F  Y  G++    C N    +DHAV AVGYG      Y  +KNSW T WG  G
Sbjct: 134 LQAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGP----NYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
           Y+ +     N    CG+ T+  Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           +  Q  CGSCW+F     VEG   ++  KL  LS+Q L+DC     ++GC GG    + +
Sbjct: 16  VRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE--RRSHGCKGGYPPYALE 73
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVS 267
           ++ K+G+  +  Y PY  +   C           T G   V PN+E  L  A+AK  PVS
Sbjct: 74  YVAKNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVS 131
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
           V +++  + F  Y  G++ +  C      +DHAV AVGYG+  GK Y  +KNSW T WG 
Sbjct: 132 VVVESKGRPFQLYKGGIF-EGPCGTK---VDHAVTAVGYGKSGGKGYILIKNSWGTAWGE 187
Query: 328 QGYVLMSIKDNN----CGVMTAPTYVT 350
           +GY+ +     N    CG+  +  Y T
Sbjct: 188 KGYIRIKRAPGNSPGVCGLYKSSYYPT 214

>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 114/211 (54%), Gaps = 25/211 (11%)
Query: 145 GYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDF 204
           G   + DQ  CGS W+F + G+VE  Y ++  KL  LS+Q L+DCS  + N GC+GG   
Sbjct: 28  GVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCS--FKNYGCNGGLIN 85
Query: 205 RSYQWIMKHGLPTQDDYGPYLGQDA--YCHIANTTATATMTGFVNVTPNSEDALKLALAK 262
            +++ +++ G    D   PY+  DA   C+I   T    +  +++V  N    LK AL  
Sbjct: 86  NAFEDMIELGGICPDGDYPYV-SDAPNLCNIDRCTEKYGIKNYLSVPDNK---LKEALRF 141
Query: 263 HGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----------ELDGK 312
            GP+S+++ A    F+FY  G+ +D +C    D L+HAV+ VG+G          + +  
Sbjct: 142 LGPISISV-AVSDDFAFYKEGI-FDGECG---DQLNHAVMLVGFGMKEIVNPLTKKGEKH 196
Query: 313 PYWQVKNSWSTYWGNQGYVLMSIKDNNCGVM 343
            Y+ +KNSW   WG +G++  +I+ +  G+M
Sbjct: 197 YYYIIKNSWGQQWGERGFI--NIETDESGLM 225

>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           +  Q  CGSCW+F     VEG   ++  KL  LS+Q L+DC     ++GC GG    + +
Sbjct: 16  VRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE--RRSHGCKGGYPPYALE 73
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVS 267
           ++ K+G+  +  Y PY  +   C           T G   V PN+E  L  A+AK  PVS
Sbjct: 74  YVAKNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVS 131
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
           V +++  + F  Y  G++ +  C      ++HAV AVGYG+  GK Y  +KNSW T WG 
Sbjct: 132 VVVESKGRPFQLYKGGIF-EGPCGTK---VEHAVTAVGYGKSGGKGYILIKNSWGTAWGE 187
Query: 328 QGYVLMSIKDNN----CGVMTAPTYVT 350
           +GY+ +     N    CG+  +  Y T
Sbjct: 188 KGYIRIKRAPGNSPGVCGLYKSSYYPT 214

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGS W+F     +EG   ++   L   S+Q L+DC     + GC+GG  + + Q +
Sbjct: 18  NQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
            ++G+  ++ Y PY G   YC        A  T G   V P +E AL  ++A   PVSV 
Sbjct: 76  AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           ++A+ K F  Y  G++    C N    +DHAV AVGYG      Y  +KNSW T WG  G
Sbjct: 134 LEAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGP----NYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
           Y+ +     N    CG+ T+  Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGS W+F     +EG   ++   L   S+Q L+DC     + GC+GG  + + Q +
Sbjct: 18  NQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
            ++G+  ++ Y PY G   YC        A  T G   V P +E AL  ++A   PVSV 
Sbjct: 76  AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           ++A+ K F  Y  G++    C N    +DHAV AVGY    G  Y  +KNSW T WG  G
Sbjct: 134 LEAAGKDFQLYRGGIFVG-PCGNK---VDHAVAAVGY----GPNYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
           Y+ +     N    CG+ T+  Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGS W+F     +E    ++   L   S+Q L+DC     + GC+GG  + + Q +
Sbjct: 169 NQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCD--RRSYGCNGGYPWSALQLV 226
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
            ++G+  ++ Y PY G   YC        A  T G   V P +E AL  ++A   PVSV 
Sbjct: 227 AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ-PVSVV 284
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           ++A+ K F  Y  G++    C N    +DHAV AVGY    G  Y  ++NSW T WG  G
Sbjct: 285 LEAAGKDFQLYRGGIFVG-PCGNK---VDHAVAAVGY----GPNYILIRNSWGTGWGENG 336
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
           Y+ +     N    CG+ T+  Y
Sbjct: 337 YIRIKRGTGNSYGVCGLYTSSFY 359

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGS W+F     +EG   ++   L   S+Q L+DC     + GC+GG  + + Q +
Sbjct: 18  NQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
            ++G+  ++ Y PY G   YC        A  T G   V P ++ AL  ++A   PVSV 
Sbjct: 76  AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           + A+ K F  Y  G++    C N    +DHAV AVGYG      Y  +KNSW T WG  G
Sbjct: 134 LQAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGP----NYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
           Y+ +     N    CG+ T+  Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|1PCI|A Chain A, Procaricain Length = 322

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 103/204 (50%), Gaps = 13/204 (6%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM 211
           Q  CGSCW+F     VEG   ++  KL  LS+Q L+DC     ++GC GG    + +++ 
Sbjct: 125 QGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE--RRSHGCKGGYPPYALEYVA 182
Query: 212 KHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVAI 270
           K+G+  +  Y PY  +   C           T G   V PN+E  L  A+AK  PVSV +
Sbjct: 183 KNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVSVVV 240
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           ++  + F  Y  G++ +  C    DG   AV AVGYG+  GK Y  +KNSW T WG +GY
Sbjct: 241 ESKGRPFQLYKGGIF-EGPCGTKVDG---AVTAVGYGKSGGKGYILIKNSWGTAWGEKGY 296
Query: 331 VLMSIKDNN----CGVMTAPTYVT 350
           + +     N    CG+  +  Y T
Sbjct: 297 IRIKRAPGNSPGVCGLYKSSYYPT 320

>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM 211
           Q  C SCW+F T   VEG   +K   L  LS+Q L+DC     + GC+ G    S Q++ 
Sbjct: 19  QGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCD--LQSYGCNRGYQSTSLQYVA 76
Query: 212 KHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVAI 270
           ++G+  +  Y PY+ +   C           T G   V  N+E +L  A+A H PVSV +
Sbjct: 77  QNGIHLRAKY-PYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEGSLLNAIA-HQPVSVVV 134
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           +++ + F  Y  G++ +  C      +DHAV AVGYG+  GK Y  +KNSW   WG  GY
Sbjct: 135 ESAGRDFQNYKGGIF-EGSCGTK---VDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGY 190
Query: 331 VLMSIKDNN----CGVMTAPTY 348
           + +     N    CGV  +  Y
Sbjct: 191 IRIRRASGNSPGVCGVYRSSYY 212

>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 17/207 (8%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           + +Q  CGSCW+F +  AVEG   +   +L  LS+Q L+DC     + GC GG    + Q
Sbjct: 16  VRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCE--RRSYGCRGGFPLYALQ 73
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP-NSEDALKLALAKHGPVS 267
           ++   G+  +  Y PY G    C  +        T  V   P N+E AL   +A   PVS
Sbjct: 74  YVANSGIHLRQYY-PYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQ-PVS 131
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
           + ++A  ++F  Y  G++    C  S   +DHAV AVGYG      Y  +KNSW T WG 
Sbjct: 132 IVVEAKGRAFQNYRGGIFAGP-CGTS---IDHAVAAVGYGN----DYILIKNSWGTGWGE 183
Query: 328 QGYVLMSIKDNN----CGVMTAPTYVT 350
            GY+ +     N    CGV++   + T
Sbjct: 184 GGYIRIKRGSGNPQGACGVLSDSVFPT 210

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 9/202 (4%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM 211
           Q  CGSCW+F    A E AY         LS+Q L+DC+     +GC G    R  ++I 
Sbjct: 29  QGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCA---SQHGCHGDTIPRGIEYIQ 85
Query: 212 KHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAK-HGPVSVAI 270
           ++G+  +  Y PY+ ++  C   N+     ++ +  + P     ++ AL + H  ++V I
Sbjct: 86  QNGVVEERSY-PYVAREQRCRRPNSQHYG-ISNYCQIYPPDVKQIREALTQTHTAIAVII 143
Query: 271 DASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
                ++F  Y             P+   HAV  VGYG   G  YW V+NSW T WG+ G
Sbjct: 144 GIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSG 201
Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
           Y      +N   +   P  V M
Sbjct: 202 YGYFQAGNNLMMIEQYPYVVIM 223

>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 142 EMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGG 201
           +M+    +  Q  CGSCW+F    A E AY    ++   L++Q L+DC+     +GC G 
Sbjct: 18  QMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCA---SQHGCHGD 74
Query: 202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALA 261
              R  ++I  +G+  Q+ Y  Y+ ++  C   N      ++ +  + P + + ++ ALA
Sbjct: 75  TIPRGIEYIQHNGV-VQESYYRYVAREQSCRRPNAQRFG-ISNYCQIYPPNANKIREALA 132
Query: 262 K-HGPVSVAIDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKN 319
           + H  ++V I      +F  Y             P+   HAV  VGY    G  YW V+N
Sbjct: 133 QTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRN 190
Query: 320 SWSTYWGNQGY 330
           SW T WG+ GY
Sbjct: 191 SWDTNWGDNGY 201

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 16/204 (7%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYM--KHKKLAVLSQQALIDCSWGYGNNGCDGGEDFR-SY 207
           +Q  CGSC+SF + G +E    +   + +  +LS Q ++ CS  Y   GCDGG  +  + 
Sbjct: 226 NQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCS-PYAQ-GCDGGFPYLIAG 283
Query: 208 QWIMKHGLPTQDDYGPYLGQDAYCHIANTT----ATATMTGFVNVTPNSEDALKLALAKH 263
           ++    G+  +++  PY   DA C          ++            +E  +KL L KH
Sbjct: 284 KYAQDFGV-VEENCFPYTATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKH 342
Query: 264 GPVSVAIDASQKSFSFYVNGVYYDEKCN---NSPDGLDHAVLAVGYGE--LDGKPYWQVK 318
           GP++VA +     F  Y +G+Y+    +   N  +  +HAVL VGYG+  + G  YW VK
Sbjct: 343 GPMAVAFEV-HDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVK 401
Query: 319 NSWSTYWGNQGYVLMSIKDNNCGV 342
           NSW + WG  GY  +    + C +
Sbjct: 402 NSWGSQWGESGYFRIRRGTDECAI 425

>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 9/191 (4%)
Query: 142 EMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGG 201
           +M+    +  Q  CGSCW+F    A E AY     +   L++Q L+DC+     +GC G 
Sbjct: 18  QMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCA---SQHGCHGD 74
Query: 202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALA 261
              R  ++I  +G+  Q+ Y  Y+ ++  C   N      ++ +  + P + + ++ ALA
Sbjct: 75  TIPRGIEYIQHNGV-VQESYYRYVAREQSCRRPNAQRFG-ISNYCQIYPPNVNKIREALA 132
Query: 262 K-HGPVSVAIDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKN 319
           + H  ++V I      +F  Y             P+   HAV  VGY    G  YW V+N
Sbjct: 133 QTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRN 190
Query: 320 SWSTYWGNQGY 330
           SW T WG+ GY
Sbjct: 191 SWDTNWGDNGY 201

>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 9/191 (4%)
Query: 142 EMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGG 201
           +M+    +  Q  CGS W+F    A E AY     +   L++Q L+DC+     +GC G 
Sbjct: 98  QMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA---SQHGCHGD 154
Query: 202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALA 261
              R  ++I  +G+  Q+ Y  Y+ ++  C   N      ++ +  + P + + ++ ALA
Sbjct: 155 TIPRGIEYIQHNGV-VQESYYRYVAREQSCRRPNAQRFG-ISNYCQIYPPNANKIREALA 212
Query: 262 K-HGPVSVAIDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKN 319
           + H  ++V I      +F  Y             P+   HAV  VGY    G  YW V+N
Sbjct: 213 QTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRN 270
Query: 320 SWSTYWGNQGY 330
           SW T WG+ GY
Sbjct: 271 SWDTNWGDNGY 281

>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 9/191 (4%)
Query: 142 EMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGG 201
           +M+    +  Q  CGS W+F    A E AY    ++   L++Q L+DC+     +GC G 
Sbjct: 18  QMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCA---SQHGCHGD 74
Query: 202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALA 261
              R  ++I  +G+  Q+ Y  Y+ ++  C   N      ++ +  + P + + ++ ALA
Sbjct: 75  TIPRGIEYIQHNGV-VQESYYRYVAREQSCRRPNAQRFG-ISNYCQIYPPNANKIREALA 132
Query: 262 K-HGPVSVAIDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKN 319
           + H  ++V I      +F  Y             P+   HAV  VGY    G  YW V+N
Sbjct: 133 QTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRN 190
Query: 320 SWSTYWGNQGY 330
           SW T WG+ GY
Sbjct: 191 SWDTNWGDNGY 201

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 20/208 (9%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYM--KHKKLAVLSQQALIDCSWGYGNNGCDGGEDFR- 205
           + +Q+ CGSC+SF + G +E    +   + +  +LS Q ++ CS  Y   GC+GG  +  
Sbjct: 225 VRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCS-QYAQ-GCEGGFPYLI 282
Query: 206 SYQWIMKHGLPTQDDYGPYLGQDAYCHIAN------TTATATMTGFVNVTPNSEDALKLA 259
           + ++    GL  +  + PY G D+ C +        ++    + GF      +E  +KL 
Sbjct: 283 AGKYAQDFGLVEEACF-PYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGC--NEALMKLE 339
Query: 260 LAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN---NSPDGLDHAVLAVGYG--ELDGKPY 314
           L  HGP++VA +     F  Y  G+Y+        N  +  +HAVL VGYG     G  Y
Sbjct: 340 LVHHGPMAVAFEVYD-DFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDY 398
Query: 315 WQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
           W VKNSW T WG  GY  +    + C +
Sbjct: 399 WIVKNSWGTGWGENGYFRIRRGTDECAI 426

>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 155 CGSCWSFGTTGAVEGAYYMKHKKL---AVLSQQALIDCSWGYGNNG-CDGGEDFRSYQWI 210
           CGSCW+  +T A+     +K K      +LS Q +IDC    GN G C+GG D   + + 
Sbjct: 28  CGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDC----GNAGSCEGGNDLSVWDYA 83
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPN-------------SEDALK 257
            +HG+P  +    Y  +D  C   N   T       +   N               + + 
Sbjct: 84  HQHGIP-DETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMM 142
Query: 258 LALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQV 317
             +  +GP+S  I A+++  + Y  G+Y + +       ++H V   G+G  DG  YW V
Sbjct: 143 AEIYANGPISCGIMATER-LANYTGGIYAEYQ---DTTYINHVVSVAGWGISDGTEYWIV 198
Query: 318 KNSWSTYWGNQGYVLM 333
           +NSW   WG +G++ +
Sbjct: 199 RNSWGEPWGERGWLRI 214

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 155 CGSCWSFGTTGAVEGAYYMKHKKL---AVLSQQALIDCSWGYGNNG-CDGGEDFRSYQWI 210
           CGSCW+  +T A+     +K K      +LS Q +IDC    GN G C+GG D   + + 
Sbjct: 63  CGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDC----GNAGSCEGGNDLSVWDYA 118
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPN-------------SEDALK 257
            +HG+P  +    Y  +D  C   N   T       +   N               + + 
Sbjct: 119 HQHGIP-DETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMM 177
Query: 258 LALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQV 317
             +  +GP+S  I A+++  + Y  G+Y + +       ++H V   G+G  DG  YW V
Sbjct: 178 AEIYANGPISCGIMATER-LANYTGGIYAEYQ---DTTYINHVVSVAGWGISDGTEYWIV 233
Query: 318 KNSWSTYWGNQGYVLM 333
           +NSW   WG +G++ +
Sbjct: 234 RNSWGEPWGERGWLRI 249

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 33/220 (15%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYY-MKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY 207
           + DQS CGSCW+     A+   +  M   +   +S   L+ C    G+ GC+GG+  R++
Sbjct: 113 IADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPDRAW 171
Query: 208 QWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP----------------- 250
            +    GL   D   PY       H  +       + F   TP                 
Sbjct: 172 AYFSSTGL-VSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYR 230
Query: 251 -------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLD-HAVL 302
                    ED     L   GP  VA D  +  F  Y +GVY+    + S   L  HAV 
Sbjct: 231 SWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVYH----HVSGQYLGGHAVR 285
Query: 303 AVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
            VG+G  +G PYW++ NSW+T WG  GY L+    + CG+
Sbjct: 286 LVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 325

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 33/220 (15%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAY-YMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY 207
           + DQS CGSCW+     A+   +  M   +   +S   L+ C    G+ GC+GG+  R++
Sbjct: 90  IADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPDRAW 148
Query: 208 QWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP----------------- 250
            +    GL   D   PY       H  +       + F   TP                 
Sbjct: 149 AYFSSTGL-VSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYR 207
Query: 251 -------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLD-HAVL 302
                    ED     L   GP  VA D  +  F  Y +GVY+    + S   L  HAV 
Sbjct: 208 SWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVYH----HVSGQYLGGHAVR 262
Query: 303 AVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
            VG+G  +G PYW++ NSW+T WG  GY L+    + CG+
Sbjct: 263 LVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 302

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 33/220 (15%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAY-YMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY 207
           + DQS CGSCW+     A+   +  M   +   +S   L+ C    G+ GC+GG+  R++
Sbjct: 91  IADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPDRAW 149
Query: 208 QWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP----------------- 250
            +    GL   D   PY       H  +       + F   TP                 
Sbjct: 150 AYFSSTGL-VSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYR 208
Query: 251 -------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLD-HAVL 302
                    ED     L   GP  VA D  +  F  Y +GVY+    + S   L  HAV 
Sbjct: 209 SWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVYH----HVSGQYLGGHAVR 263
Query: 303 AVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
            VG+G  +G PYW++ NSW+T WG  GY L+    + CG+
Sbjct: 264 LVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 303

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 100/245 (40%), Gaps = 39/245 (15%)
Query: 132 ASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAV---LSQQALID 188
           AS DA     +      + DQ  CGSCW+FG   A+     + H    V   +S + L+ 
Sbjct: 66  ASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLT 124
Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYC------HIANTTATATM 242
           C      +GC+GG    ++ +  + GL +   Y  ++G   Y       H+  +    T 
Sbjct: 125 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 184
Query: 243 TGFV---------NVTP----------------NSEDALKLALAKHGPVSVAIDASQKSF 277
            G             +P                NSE  +   + K+GPV  A       F
Sbjct: 185 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDF 243
Query: 278 SFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 337
             Y +GVY  +       G  HA+  +G+G  +G PYW V NSW+T WG+ G+  +    
Sbjct: 244 LLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 300
Query: 338 NNCGV 342
           ++CG+
Sbjct: 301 DHCGI 305

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 39/247 (15%)
Query: 132 ASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAV---LSQQALID 188
           AS DA     +      + DQ  CGSCW+FG   A+     + H    V   +S + L+ 
Sbjct: 4   ASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLT 62
Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYC------HIANTTATATM 242
           C      +GC+GG    ++ +  + GL +   Y  ++G   Y       H+  +    T 
Sbjct: 63  CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 122
Query: 243 TGFV---------NVTP----------------NSEDALKLALAKHGPVSVAIDASQKSF 277
            G             +P                NSE  +   + K+GPV  A       F
Sbjct: 123 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDF 181
Query: 278 SFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 337
             Y +GVY  +       G  HA+  +G+G  +G PYW V NSW+T WG+ G+  +    
Sbjct: 182 LLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 238
Query: 338 NNCGVMT 344
           ++CG+ +
Sbjct: 239 DHCGIES 245

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 39/247 (15%)
Query: 132 ASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAV---LSQQALID 188
           AS DA     +      + DQ  CGSCW+FG   A+     + H    V   +S + L+ 
Sbjct: 5   ASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLT 63
Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYC------HIANTTATATM 242
           C      +GC+GG    ++ +  + GL +   Y  ++G   Y       H+  +    T 
Sbjct: 64  CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 123
Query: 243 TGFV---------NVTP----------------NSEDALKLALAKHGPVSVAIDASQKSF 277
            G             +P                NSE  +   + K+GPV  A       F
Sbjct: 124 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDF 182
Query: 278 SFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 337
             Y +GVY  +       G  HA+  +G+G  +G PYW V NSW+T WG+ G+  +    
Sbjct: 183 LLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 239
Query: 338 NNCGVMT 344
           ++CG+ +
Sbjct: 240 DHCGIES 246

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 39/247 (15%)
Query: 132 ASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAV---LSQQALID 188
           AS DA     +      + DQ  CGSCW+FG   A+     + H    V   +S + L+ 
Sbjct: 3   ASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLT 61
Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYC------HIANTTATATM 242
           C      +GC+GG    ++ +  + GL +   Y  ++G   Y       H+  +    T 
Sbjct: 62  CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 121
Query: 243 TGFV---------NVTP----------------NSEDALKLALAKHGPVSVAIDASQKSF 277
            G             +P                NSE  +   + K+GPV  A       F
Sbjct: 122 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDF 180
Query: 278 SFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 337
             Y +GVY  +       G  HA+  +G+G  +G PYW V NSW+T WG+ G+  +    
Sbjct: 181 LLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 237
Query: 338 NNCGVMT 344
           ++CG+ +
Sbjct: 238 DHCGIES 244

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 41/248 (16%)
Query: 132 ASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAV---LSQQALID 188
           AS DA     +      + DQ  CGS W+FG   A+     + H    V   +S + L+ 
Sbjct: 9   ASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLT 67
Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAY----CHIANTTATATMTG 244
           C      +GC+GG    ++ +  + GL +   Y  ++G   Y    C      A    TG
Sbjct: 68  CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTG 127
Query: 245 FVNVTP----------------------------NSEDALKLALAKHGPVSVAIDASQKS 276
             + TP                            NSE  +   + K+GPV  A       
Sbjct: 128 EGD-TPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSD 185
Query: 277 FSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIK 336
           F  Y +GVY  +       G  HA+  +G+G  +G PYW V NSW+T WG+ G+  +   
Sbjct: 186 FLLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG 242
Query: 337 DNNCGVMT 344
            ++CG+ +
Sbjct: 243 QDHCGIES 250

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 41/231 (17%)
Query: 149 LLDQSVCGSCWSFGTTGAVEG--AYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRS 206
           + DQ  CGSCW+FG   A+      +   +    +S + L+ C      +GC+GG    +
Sbjct: 20  IRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGA 79
Query: 207 YQWIMKHGLPTQDDYGPYLGQDAY----CHIANTTATATMTGFVNVTP------------ 250
           + +  + GL +   Y  ++G   Y    C      A    TG  + TP            
Sbjct: 80  WNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGD-TPKCNKMCEAGYST 138
Query: 251 ----------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSP 294
                           +SE  +   + K+GPV  A       F  Y +GVY  E    + 
Sbjct: 139 SYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD-FLTYKSGVYKHE----AG 193
Query: 295 DGLD-HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
           D +  HA+  +G+G  +G PYW V NSW+  WG+ G+  +   +N+CG+ +
Sbjct: 194 DVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 244

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 41/231 (17%)
Query: 149 LLDQSVCGSCWSFGTTGAVEG--AYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRS 206
           + DQ  CGSCW+FG   A+      +   +    +S + L+ C      +GC+GG    +
Sbjct: 26  IRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGA 85
Query: 207 YQWIMKHGLPTQDDYGPYLGQDAY----CHIANTTATATMTGFVNVTP------------ 250
           + +  + GL +   Y  ++G   Y    C      A    TG  + TP            
Sbjct: 86  WNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGD-TPKCNKMCEAGYST 144
Query: 251 ----------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSP 294
                           +SE  +   + K+GPV  A       F  Y +GVY  E    + 
Sbjct: 145 SYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD-FLTYKSGVYKHE----AG 199
Query: 295 DGLD-HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
           D +  HA+  +G+G  +G PYW V NSW+  WG+ G+  +   +N+CG+ +
Sbjct: 200 DVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 250

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 41/231 (17%)
Query: 149 LLDQSVCGSCWSFGTTGAVEG--AYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRS 206
           + DQ  CGS W+FG   A+      +   +    +S + L+ C      +GC+GG    +
Sbjct: 82  IRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGA 141
Query: 207 YQWIMKHGLPTQDDYGPYLGQDAY----CHIANTTATATMTGFVNVTP------------ 250
           + +  + GL +   Y  ++G   Y    C      A    TG  + TP            
Sbjct: 142 WNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGD-TPKCNKMCEAGYST 200
Query: 251 ----------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSP 294
                           +SE  +   + K+GPV  A       F  Y +GVY  E    + 
Sbjct: 201 SYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS-DFLTYKSGVYKHE----AG 255
Query: 295 DGLD-HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
           D +  HA+  +G+G  +G PYW V NSW+  WG+ G+  +   +N+CG+ +
Sbjct: 256 DVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 306

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 39/238 (16%)
Query: 144 KGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKH--KKLAVLSQQALIDCSWGYGNNGCDGG 201
           K   ++ DQS CGSCW+FG   A+     ++   K+   LS   L+ C    G  GC+GG
Sbjct: 17  KSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGL-GCEGG 75
Query: 202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAY----CHIANTTATATMTGFVNVTP------- 250
               ++ + +K G+ T      + G + Y    C              +  TP       
Sbjct: 76  ILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQ 135
Query: 251 ---------------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEK 289
                                N E A++  + K+GPV       +  F  Y +G+Y   K
Sbjct: 136 KKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE-DFLNYKSGIY---K 191
Query: 290 CNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPT 347
                    HA+  +G+G  +  PYW + NSW+  WG  GY  +    + C + +  T
Sbjct: 192 HITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVT 249

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 37/229 (16%)
Query: 149 LLDQSVCGSCWSFGTTGAVEG--AYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRS 206
           + DQ  CGSCW+FG   A+      +   +    +S + ++ C  G   +GC+GGE   +
Sbjct: 20  IRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGEPSGA 79
Query: 207 YQWIMKHGLPTQDDYGPYLGQDAY---------------CHIANTTATATMTGFVNVTP- 250
           + +  K GL +   Y  ++G   Y               C     T   + T     +P 
Sbjct: 80  WNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPS 139
Query: 251 ---------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPD 295
                          N+E  +   + K+GPV  A       F  Y +GVY  +  +    
Sbjct: 140 YKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY--QHVSGEIM 196
Query: 296 GLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
           G  HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 197 G-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 35/195 (17%)
Query: 181 LSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYC------HIA 234
           +S + L+ C      +GC+GG    ++ +  + GL +   Y  ++G   Y       H+ 
Sbjct: 5   VSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVN 64
Query: 235 NTTATATMTGFV---------NVTP----------------NSEDALKLALAKHGPVSVA 269
            +    T  G             +P                NSE  +   + K+GPV  A
Sbjct: 65  GSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGA 124
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
                  F  Y +GVY  +       G  HA+  +G+G  +G PYW V NSW+T WG+ G
Sbjct: 125 FSV-YSDFLLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNG 180
Query: 330 YVLMSIKDNNCGVMT 344
           +  +    ++CG+ +
Sbjct: 181 FFKILRGQDHCGIES 195

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 87/229 (37%), Gaps = 37/229 (16%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           + DQ  CGSCW+FG   A+     +       +   A    +   G  G      F S  
Sbjct: 20  IRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGA 79
Query: 209 WIM--KHGLPTQDDYGPYLGQDAY---------------CHIANTTATATMTGFVNVTP- 250
           W    K GL +   Y  ++G   Y               C     T   + T     +P 
Sbjct: 80  WNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPS 139
Query: 251 ---------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPD 295
                          N+E  +   + K+GPV  A       F  Y +GVY  +  +    
Sbjct: 140 YKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY--QHVSGEIM 196
Query: 296 GLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
           G  HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 197 G-GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 244

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 251 NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELD 310
           N+E  +   + K+GPV  A       F  Y +GVY  +  +    G  HA+  +G+G  +
Sbjct: 107 NNEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY--QHVSGEIMG-GHAIRILGWGVEN 162
Query: 311 GKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
           G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 163 GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196

>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 164

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYM--KHKKLAVLSQQALIDCSWGYGNNGCDGGEDFR-SY 207
           +Q+ CGSC+SF + G +E    +   + +  +LS Q ++ CS      GC+GG  +  + 
Sbjct: 21  NQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ--YAQGCEGGFPYLIAG 78
Query: 208 QWIMKHGLPTQDDYGPYLGQDAYCHIAN------TTATATMTGFVNVTPNSEDALKLALA 261
           ++    GL  +  + PY G D+ C +        ++    + GF      +E  +KL L 
Sbjct: 79  KYAQDFGLVEEACF-PYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGC--NEALMKLELV 135
Query: 262 KHGPVSVAIDASQKSFSFYVNGVYY 286
            HGP++VA +     F  Y  G+Y+
Sbjct: 136 HHGPMAVAFEV-YDDFLHYKKGIYH 159

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 84/219 (38%), Gaps = 38/219 (17%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY-QW 209
           DQ  C + W F +   +E    MK  +   +S   + +C  G   + CD G     + Q 
Sbjct: 26  DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 85
Query: 210 IMKHG-LPTQDDYG-PYLGQDAYC-----HIANTTATATMTGFVNVTPNSEDA------- 255
           I  +G LP + +Y   Y+     C     H  N      +    N  PNS D        
Sbjct: 86  IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKN-EPNSLDGKGYTAYE 144
Query: 256 --------------LKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAV 301
                         +K  +   G V   I A +    +  +G      C +  D  DHAV
Sbjct: 145 SERFHDNMDAFVKIIKTEVMNKGSVIAYIKA-ENVMGYEFSGKKVQNLCGD--DTADHAV 201
Query: 302 LAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI 335
             VGYG     E + K YW V+NSW  YWG++GY  + +
Sbjct: 202 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 240

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 84/219 (38%), Gaps = 38/219 (17%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY-QW 209
           DQ  C + W F +   +E    MK  +   +S   + +C  G   + CD G     + Q 
Sbjct: 27  DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 86
Query: 210 IMKHG-LPTQDDYG-PYLGQDAYC-----HIANTTATATMTGFVNVTPNSEDA------- 255
           I  +G LP + +Y   Y+     C     H  N      +    N  PNS D        
Sbjct: 87  IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKN-EPNSLDGKGYTAYE 145
Query: 256 --------------LKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAV 301
                         +K  +   G V   I A +    +  +G      C +  D  DHAV
Sbjct: 146 SERFHDNMDAFVKIIKTEVMNKGSVIAYIKA-ENVMGYEFSGKKVKNLCGD--DTADHAV 202
Query: 302 LAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI 335
             VGYG     E + K YW V+NSW  YWG++GY  + +
Sbjct: 203 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 241

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 298 DHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
           +HAVL VGYG     G  YW VKNSW T WG  GY  +    + C +
Sbjct: 10  NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAI 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	1e-109
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	1e-103
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	1e-102
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	1e-102
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	1e-101
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	1e-101
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	1e-100
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	1e-99
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	1e-98
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	7e-98
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	3e-96
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	1e-94
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	7e-94
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	6e-91
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	2e-90
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	4e-89
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	5e-87
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	2e-86
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	2e-86
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	5e-86
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	3e-85
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	7e-85
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	2e-83
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	4e-83
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	5e-83
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	7e-83
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	1e-82
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	7e-81
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	5e-80
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	2e-78
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	1e-69
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	3e-67
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	1e-66
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	3e-65
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	3e-64
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	8e-64
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	3e-63
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	2e-62
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	2e-59
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	8e-06
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score =  316 bits (812), Expect = e-109
 Identities = 82/199 (41%), Positives = 119/199 (59%), Gaps = 3/199 (1%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F TTGA+E A  +   K+  L++Q L+DC+  + N+GC GG   +++++I
Sbjct: 19  NQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYI 78

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
             + G+  +D Y PY GQD +C      A A +    N+T N E+A+  A+A + PVS A
Sbjct: 79  RYNKGIMGEDTY-PYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFA 137

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
            + +   F  Y  G+Y    C+ +PD ++HAVLAVGYGE +G PYW VKNSW   WG  G
Sbjct: 138 FEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNG 196

Query: 330 YVLMSIKDNNCGVMTAPTY 348
           Y L+    N CG+    +Y
Sbjct: 197 YFLIERGKNMCGLAACASY 215

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  305 bits (784), Expect = e-103
 Identities = 85/202 (42%), Positives = 122/202 (60%), Gaps = 5/202 (2%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGS WSF TTGAVEG   ++  +L  LS+Q LIDCS  YGN GCDGG    ++ +I
Sbjct: 132 DQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYI 191

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
             +G+ ++  Y PY  Q  YC   ++ +  T++G+ ++    E++L  A+ + GPV+VAI
Sbjct: 192 HDYGIMSESAY-PYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAI 250

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA+     FY  G++YD+ C  +   L+H VL VGYG  +G+ YW +KNSW + WG  GY
Sbjct: 251 DATD-ELQFYSGGLFYDQTC--NQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGY 307

Query: 331 VLMSI-KDNNCGVMTAPTYVTM 351
                   NNCG+ TA +Y  +
Sbjct: 308 WRQVRNYGNNCGIATAASYPAL 329

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score =  299 bits (767), Expect = e-102
 Identities = 94/203 (46%), Positives = 126/203 (62%), Gaps = 7/203 (3%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+GC GG    ++Q++
Sbjct: 18  NQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYV 75

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
            K+ G+ ++D Y PY+GQ+  C    T   A   G+  +   +E ALK A+A+ GPVSVA
Sbjct: 76  QKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVA 134

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDAS  SF FY  GVYYDE C  + D L+HAVLAVGYG   G  +W +KNSW   WGN+G
Sbjct: 135 IDASLTSFQFYSKGVYYDESC--NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKG 192

Query: 330 YVLMSI-KDNNCGVMTAPTYVTM 351
           Y+LM+  K+N CG+    ++  M
Sbjct: 193 YILMARNKNNACGIANLASFPKM 215

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  302 bits (775), Expect = e-102
 Identities = 81/202 (40%), Positives = 109/202 (53%), Gaps = 5/202 (2%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGS W+F TTG +EG Y    +     S+Q L+DCS  +GNNGC GG    +YQ++
Sbjct: 109 DQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYL 168

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
            + GL T+  Y PY   +  C        A +TGF  V   SE  LK  +   GP +VA+
Sbjct: 169 KQFGLETESSY-PYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAV 227

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           D     F  Y +G+Y  + C  SP  ++HAVLAVGYG   G  YW VKNSW   WG +GY
Sbjct: 228 DVES-DFMMYRSGIYQSQTC--SPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGY 284

Query: 331 VLMSI-KDNNCGVMTAPTYVTM 351
           + M   + N CG+ +  +   +
Sbjct: 285 IRMVRNRGNMCGIASLASLPMV 306

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score =  297 bits (764), Expect = e-101
 Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 7/204 (3%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQW 209
            Q  CG+CW+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+
Sbjct: 19  YQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQY 78

Query: 210 IMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
           I+ + G+ +   Y PY   D  C   +    AT + +  +    ED LK A+A  GPVSV
Sbjct: 79  IIDNKGIDSDASY-PYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSV 137

Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
            +DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +
Sbjct: 138 GVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEE 194

Query: 329 GYVLMSI-KDNNCGVMTAPTYVTM 351
           GY+ M+  K N+CG+ + P+Y  +
Sbjct: 195 GYIRMARNKGNHCGIASFPSYPEI 218

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  300 bits (771), Expect = e-101
 Identities = 83/204 (40%), Positives = 118/204 (57%), Gaps = 7/204 (3%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQW 209
            Q  CG+ W+F   GA+E    +K  KL  LS Q L+DCS   YGN GC+GG    ++Q+
Sbjct: 116 YQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQY 175

Query: 210 IMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
           I+ + G+ +   Y PY   D  C   +    AT + +  +    ED LK A+A  GPVSV
Sbjct: 176 IIDNKGIDSDASY-PYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSV 234

Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
            +DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +
Sbjct: 235 GVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEE 291

Query: 329 GYVLMSI-KDNNCGVMTAPTYVTM 351
           GY+ M+  K N+CG+ + P+Y  +
Sbjct: 292 GYIRMARNKGNHCGIASFPSYPEI 315

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  298 bits (766), Expect = e-100
 Identities = 94/203 (46%), Positives = 126/203 (62%), Gaps = 7/203 (3%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC     N+GC GG    ++Q++
Sbjct: 117 NQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYV 174

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
            K+ G+ ++D Y PY+GQ+  C    T   A   G+  +   +E ALK A+A+ GPVSVA
Sbjct: 175 QKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVA 233

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDAS  SF FY  GVYYDE C  + D L+HAVLAVGYG   G  +W +KNSW   WGN+G
Sbjct: 234 IDASLTSFQFYSKGVYYDESC--NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKG 291

Query: 330 YVLMSI-KDNNCGVMTAPTYVTM 351
           Y+LM+  K+N CG+    ++  M
Sbjct: 292 YILMARNKNNACGIANLASFPKM 314

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score =  292 bits (750), Expect = 1e-99
 Identities = 90/207 (43%), Positives = 125/207 (60%), Gaps = 10/207 (4%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F  TGA+EG  + K  +L  LS+Q L+DCS   GN GC+GG    ++Q++
Sbjct: 18  NQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV 77

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
             + GL +++ Y PY   +  C      + A  TGFV++ P  E AL  A+A  GP+SVA
Sbjct: 78  QDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKALMKAVATVGPISVA 135

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYW 325
           IDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D   YW VKNSW   W
Sbjct: 136 IDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEW 193

Query: 326 GNQGYVLMSI-KDNNCGVMTAPTYVTM 351
           G  GYV M+  + N+CG+ +A +Y T+
Sbjct: 194 GMGGYVKMAKDRRNHCGIASAASYPTV 220

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  293 bits (753), Expect = 1e-98
 Identities = 89/207 (42%), Positives = 124/207 (59%), Gaps = 10/207 (4%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F  TGA+EG  + K  +L  LS+Q L+DCS   GN GC+GG    ++Q++
Sbjct: 114 NQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV 173

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
             + GL +++ Y PY   +  C      + A   GFV++ P  E AL  A+A  GP+SVA
Sbjct: 174 QDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKALMKAVATVGPISVA 231

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYW 325
           IDA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D   YW VKNSW   W
Sbjct: 232 IDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEW 289

Query: 326 GNQGYVLMSI-KDNNCGVMTAPTYVTM 351
           G  GYV M+  + N+CG+ +A +Y T+
Sbjct: 290 GMGGYVKMAKDRRNHCGIASAASYPTV 316

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  292 bits (749), Expect = 7e-98
 Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 10/205 (4%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKL--AVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           +Q  CGS W+F +TGA+E    + +     + +S+Q L+DC       GC GG    ++ 
Sbjct: 133 NQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCV--PNALGCSGGWMNDAFT 190

Query: 209 WIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVS 267
           ++ ++ G+ ++  Y PY   D  CH       A ++G+V ++   E+ L   +A  GPV+
Sbjct: 191 YVAQNGGIDSEGAY-PYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVA 249

Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
           VA DA    F  Y  GVYY+  C    +   HAVL VGYG  +G+ YW VKNSW   WG 
Sbjct: 250 VAFDADD-PFGSYSGGVYYNPTC--ETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGL 306

Query: 328 QGYVLMS-IKDNNCGVMTAPTYVTM 351
            GY  ++   +N+CG+    +  T+
Sbjct: 307 DGYFKIARNANNHCGIAGVASVPTL 331

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  287 bits (737), Expect = 3e-96
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 9/203 (4%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
            Q  CGS W+F    A E AY     +   L++Q L+DC+     +GC G    R  ++I
Sbjct: 107 MQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA---SQHGCHGDTIPRGIEYI 163

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAK-HGPVSVA 269
             +G+  +  Y  Y+ ++  C   N      ++ +  + P + + ++ ALA+ H  ++V 
Sbjct: 164 QHNGVVQESYY-RYVAREQSCRRPNAQR-FGISNYCQIYPPNANKIREALAQTHSAIAVI 221

Query: 270 IDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
           I      +F  Y                  HAV  VGY    G  YW V+NSW T WG+ 
Sbjct: 222 IGIKDLDAFRHYDGRTIIQRDN--GYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDN 279

Query: 329 GYVLMSIKDNNCGVMTAPTYVTM 351
           GY   +   +   +   P  V +
Sbjct: 280 GYGYFAANIDLMMIEEYPYVVIL 302

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score =  278 bits (713), Expect = 7e-94
 Identities = 88/207 (42%), Positives = 120/207 (57%), Gaps = 12/207 (5%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F TTGA+EGA+  K  KL  LS+Q L+DCS   GN  C GGE   ++Q++
Sbjct: 24  DQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYV 83

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           +   G+ ++D Y PYL +D  C   +      + GF +V   SE A+K ALA   PVS+A
Sbjct: 84  LDSGGICSEDAY-PYLARDEECRAQSCEKVVKILGFKDVPRRSEAAMKAALA-KSPVSIA 141

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGN 327
           I+A Q  F FY  GV +D  C      LDH VL VGYG  +   K +W +KNSW T WG 
Sbjct: 142 IEADQMPFQFYHEGV-FDASCGTD---LDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGR 197

Query: 328 QGYVLMS---IKDNNCGVMTAPTYVTM 351
            GY+ M+    ++  CG++   ++  M
Sbjct: 198 DGYMYMAMHKGEEGQCGLLLDASFPVM 224

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score =  269 bits (690), Expect = 2e-90
 Identities = 77/202 (38%), Positives = 104/202 (51%), Gaps = 7/202 (3%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ +CGSCW+F  TG VEG +++    L  LS+Q L+DC     +  C GG    +Y  I
Sbjct: 18  DQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD--KMDKACMGGLPSNAYSAI 75

Query: 211 MK-HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
               GL T+DDY  Y G    C  +   A   +   V +   +E  L   LAK GP+SVA
Sbjct: 76  KNLGGLETEDDY-SYQGHMQSCQFSAEKAKVYIQDSVEL-SQNEQKLAAWLAKRGPISVA 133

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           I+A      FY +G+    +   SP  +DHAVL VGYG+    P+W +KNSW T WG +G
Sbjct: 134 INAF--GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKG 191

Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
           Y  +      CGV T  +   +
Sbjct: 192 YYYLHRGSGACGVNTMASSAVV 213

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  269 bits (691), Expect = 4e-89
 Identities = 69/206 (33%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
            Q  CGSCW+F     VEG   ++  KL  LS+Q L+DC     ++GC GG    + +++
Sbjct: 124 HQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE--RRSHGCKGGYPPYALEYV 181

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
            K+G+  +  Y PY  +   C            +G   V PN+E  L  A+A   PVSV 
Sbjct: 182 AKNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVV 239

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           +++  + F  Y  G++    C      +D AV AVGYG+  GK Y  +KNSW T WG +G
Sbjct: 240 VESKGRPFQLYKGGIFEGP-CGTK---VDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKG 295

Query: 330 YVLMSIKDNN----CGVMTAPTYVTM 351
           Y+ +     N    CG+  +  Y T 
Sbjct: 296 YIRIKRAPGNSPGVCGLYKSSYYPTK 321

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score =  260 bits (667), Expect = 5e-87
 Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 13/203 (6%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
            Q  CGSCW+F     VEG   ++  KL  LS+Q L+DC     ++GC GG    + +++
Sbjct: 18  HQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE--RRSHGCKGGYPPYALEYV 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
            K+G+  +  Y PY  +   C            +G   V PN+E  L  A+A   PVSV 
Sbjct: 76  AKNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVV 133

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           +++  + F  Y  G++    C      +DHAV AVGYG+  GK Y  +KNSW T WG +G
Sbjct: 134 VESKGRPFQLYKGGIFEGP-CGTK---VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKG 189

Query: 330 YVLMSIKDNN----CGVMTAPTY 348
           Y+ +     N    CG+  +  Y
Sbjct: 190 YIRIKRAPGNSPGVCGLYKSSYY 212

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score =  258 bits (663), Expect = 2e-86
 Identities = 76/206 (36%), Positives = 103/206 (50%), Gaps = 13/206 (6%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F T   VEG   +    L  LS+Q L+DC     + GC GG    S Q++
Sbjct: 18  NQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCD--KHSYGCKGGYQTTSLQYV 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
             +G+ T   Y PY  +   C   +       +TG+  V  N E +   ALA + P+SV 
Sbjct: 76  ANNGVHTSKVY-PYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALA-NQPLSVL 133

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           ++A  K F  Y +GV+ D  C      LDHAV AVGYG  DGK Y  +KNSW   WG +G
Sbjct: 134 VEAGGKPFQLYKSGVF-DGPCGTK---LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKG 189

Query: 330 YVLMSIKDNN----CGVMTAPTYVTM 351
           Y+ +  +  N    CGV  +  Y   
Sbjct: 190 YMRLKRQSGNSQGTCGVYKSSYYPFK 215

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score =  258 bits (662), Expect = 2e-86
 Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 14/205 (6%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F    AVE    ++  +L  LS+Q L+DC     ++GC+GG    ++Q+I
Sbjct: 18  NQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD--TASHGCNGGWMNNAFQYI 75

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           + + G+ TQ +Y PY      C         ++ GF  VT N+E AL+ A+A   PVSV 
Sbjct: 76  ITNGGIDTQQNY-PYSAVQGSCK-PYRLRVVSINGFQRVTRNNESALQSAVA-SQPVSVT 132

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           ++A+   F  Y +G++            +H V+ VGYG   GK YW V+NSW   WGNQG
Sbjct: 133 VEAAGAPFQHYSSGIFTGPCGTA----QNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQG 188

Query: 330 YVLMSIKDNN----CGVMTAPTYVT 350
           Y+ M     +    CG+   P+Y T
Sbjct: 189 YIWMERNVASSAGLCGIAQLPSYPT 213

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score =  257 bits (660), Expect = 5e-86
 Identities = 73/203 (35%), Positives = 112/203 (55%), Gaps = 13/203 (6%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F T  AVEG   +    L  LS+Q L+DC+    N+GC GG    ++Q+I
Sbjct: 20  NQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT--TANHGCRGGWMNPAFQFI 77

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           + + G+ +++ Y PY GQD  C+        ++  + NV  ++E +L+ A+A + PVSV 
Sbjct: 78  VNNGGINSEETY-PYRGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVA-NQPVSVT 135

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           +DA+ + F  Y +G++    CN S    +HA+  VGYG  + K +W VKNSW   WG  G
Sbjct: 136 MDAAGRDFQLYRSGIFTGS-CNIS---ANHALTVVGYGTENDKDFWIVKNSWGKNWGESG 191

Query: 330 YVLMS----IKDNNCGVMTAPTY 348
           Y+         D  CG+    +Y
Sbjct: 192 YIRAERNIENPDGKCGITRFASY 214

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score =  255 bits (655), Expect = 3e-85
 Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 17/206 (8%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q+ CGSCW+F T   +EG   +   +L  LS+Q L+DC     ++GCDGG    S Q++
Sbjct: 18  NQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCE--RRSHGCDGGYQTTSLQYV 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           + +G+ T+ +Y PY  +   C   +       +TG+  V  N E +L  A+A + PVSV 
Sbjct: 76  VDNGVHTEREY-PYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIA-NQPVSVV 133

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
            D+  + F FY  G+Y      N     DHAV AVGY    GK Y  +KNSW   WG +G
Sbjct: 134 TDSRGRGFQFYKGGIYEGPCGTN----TDHAVTAVGY----GKTYLLLKNSWGPNWGEKG 185

Query: 330 YVLMS----IKDNNCGVMTAPTYVTM 351
           Y+ +          CGV T+  +   
Sbjct: 186 YIRIKRASGRSKGTCGVYTSSFFPIK 211

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score =  255 bits (654), Expect = 7e-85
 Identities = 86/208 (41%), Positives = 113/208 (54%), Gaps = 14/208 (6%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F T  AVEG   +K  KL  LS+Q L+DC     N GC+GG    ++++I
Sbjct: 19  DQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ-NQGCNGGLMDYAFEFI 77

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATA-TMTGFVNVTPNSEDALKLALAKHGPVSV 268
            +  G+ T+ +Y PY   D  C ++   A A ++ G  NV  N E+AL  A+A + PVSV
Sbjct: 78  KQRGGITTEANY-PYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVA-NQPVSV 135

Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGN 327
           AIDA    F FY  GV+    C      LDH V  VGYG  +DG  YW VKNSW   WG 
Sbjct: 136 AIDAGGSDFQFYSEGVFTGS-CGTE---LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGE 191

Query: 328 QGYVLMS----IKDNNCGVMTAPTYVTM 351
           +GY+ M      K+  CG+    +Y   
Sbjct: 192 KGYIRMERGISDKEGLCGIAMEASYPIK 219

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score =  251 bits (643), Expect = 2e-83
 Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 17/203 (8%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F     +EG   ++   L   S+Q L+DC     + GC+GG  + + Q +
Sbjct: 18  NQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD--RRSYGCNGGYPWSALQLV 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
            ++G+  ++ Y PY G   YC         A   G   V P +E AL  ++A + PVSV 
Sbjct: 76  AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIA-NQPVSVV 133

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           ++A+ K F  Y  G++     N     +DHAV AVGY    G  Y  +KNSW T WG  G
Sbjct: 134 LEAAGKDFQLYRGGIFVGPCGNK----VDHAVAAVGY----GPNYILIKNSWGTGWGENG 185

Query: 330 YVLMSIKDNN----CGVMTAPTY 348
           Y+ +     N    CG+ T+  Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score =  251 bits (644), Expect = 4e-83
 Identities = 73/213 (34%), Positives = 107/213 (50%), Gaps = 19/213 (8%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
            Q  CGS W+F  TGA+E A+ +    L  LS+Q LIDC     + GC  G  ++S++W+
Sbjct: 19  FQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCV--DESEGCYNGWHYQSFEWV 76

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGF-------VNVTPNSEDALKLALAK 262
           +KH G+ ++ DY PY  +D  C         T+  +        +    +E +L+  +  
Sbjct: 77  VKHGGIASEADY-PYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVL- 134

Query: 263 HGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWS 322
             P+SV+IDA    F FY  G+Y    C+ SP G++H VL VGYG  DG  YW  KNSW 
Sbjct: 135 EQPISVSIDAK--DFHFYSGGIYDGGNCS-SPYGINHFVLIVGYGSEDGVDYWIAKNSWG 191

Query: 323 TYWGNQGYVLMS----IKDNNCGVMTAPTYVTM 351
             WG  GY+ +          CG+    +Y  +
Sbjct: 192 EDWGIDGYIRIQRNTGNLLGVCGMNYFASYPII 224

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score =  250 bits (640), Expect = 5e-83
 Identities = 67/203 (33%), Positives = 97/203 (47%), Gaps = 17/203 (8%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F +  AVEG   +   +L  LS+Q L+DC     + GC GG    + Q++
Sbjct: 18  NQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCE--RRSYGCRGGFPLYALQYV 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
              G+  +  Y PY G    C  +          G   V  N+E AL   +A   PVS+ 
Sbjct: 76  ANSGIHLRQYY-PYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIA-IQPVSIV 133

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           ++A  ++F  Y  G++    C  S   +DHAV AVGY    G  Y  +KNSW T WG  G
Sbjct: 134 VEAKGRAFQNYRGGIFAGP-CGTS---IDHAVAAVGY----GNDYILIKNSWGTGWGEGG 185

Query: 330 YVLMS----IKDNNCGVMTAPTY 348
           Y+ +          CGV++   +
Sbjct: 186 YIRIKRGSGNPQGACGVLSDSVF 208

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score =  251 bits (643), Expect = 7e-83
 Identities = 83/211 (39%), Positives = 110/211 (52%), Gaps = 17/211 (8%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F T  +VEG   ++   L  LS+Q LIDC     N+GC GG    ++++I
Sbjct: 21  DQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD-TADNDGCQGGLMDNAFEYI 79

Query: 211 MKH-GLPTQDDYGPYLGQDAYCH----IANTTATATMTGFVNVTPNSEDALKLALAKHGP 265
             + GL T+  Y PY      C+      N+     + G  +V  NSE+ L  A+A + P
Sbjct: 80  KNNGGLITEAAY-PYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVA-NQP 137

Query: 266 VSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTY 324
           VSVA++AS K+F FY  GV+  E C      LDH V  VGYG   DGK YW VKNSW   
Sbjct: 138 VSVAVEASGKAFMFYSEGVFTGE-CGTE---LDHGVAVVGYGVAEDGKAYWTVKNSWGPS 193

Query: 325 WGNQGYVLMSIKDNN----CGVMTAPTYVTM 351
           WG QGY+ +          CG+    +Y   
Sbjct: 194 WGEQGYIRVEKDSGASGGLCGIAMEASYPVK 224

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score =  249 bits (638), Expect = 1e-82
 Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 16/206 (7%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F   G VE  +++    L  LS+Q L+ C     ++GC GG    +++WI
Sbjct: 18  DQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD--KTDSGCSGGLMNNAFEWI 75

Query: 211 MKH---GLPTQDDYGPYLGQDAY---CHIANTTATATMTGFVNVTPNSEDALKLALAKHG 264
           ++     + T+D Y PY   +     C  +  T  AT+TG V +  + E  +   LA +G
Sbjct: 76  VQENNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVELPQD-EAQIAAWLAVNG 133

Query: 265 PVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTY 324
           PV+VA+DAS  S+  Y  GV      +   + LDH VL VGY +    PYW +KNSW+T 
Sbjct: 134 PVAVAVDAS--SWMTYTGGVM----TSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQ 187

Query: 325 WGNQGYVLMSIKDNNCGVMTAPTYVT 350
           WG +GY+ ++   N C V    +   
Sbjct: 188 WGEEGYIRIAKGSNQCLVKEEASSAV 213

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score =  245 bits (629), Expect = 7e-81
 Identities = 72/217 (33%), Positives = 112/217 (51%), Gaps = 27/217 (12%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ++CGSCW+F + G+VE  Y ++ K L + S+Q L+DCS    NNGC GG    ++  +
Sbjct: 37  DQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCS--VKNNGCYGGYITNAFDDM 94

Query: 211 MKH-GLPTQDDYGPYLGQ-DAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
           +   GL +QDDY PY+      C++       T+  +V++    +D  K AL   GP+S+
Sbjct: 95  IDLGGLCSQDDY-PYVSNLPETCNLKRCNERYTIKSYVSIP---DDKFKEALRYLGPISI 150

Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----------ELDGKPYWQVK 318
           +I AS   F+FY  G  YD +C  +    +HAV+ VGYG           ++   Y+ +K
Sbjct: 151 SIAASD-DFAFYRGGF-YDGECGAA---PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIK 205

Query: 319 NSWSTYWGNQGYVLMS----IKDNNCGVMTAPTYVTM 351
           NSW + WG  GY+ +          C + T      +
Sbjct: 206 NSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLL 242

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score =  244 bits (624), Expect = 5e-80
 Identities = 53/235 (22%), Positives = 80/235 (34%), Gaps = 39/235 (16%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  C + W F +   +E    MK  +   +S   + +C  G   + CD G     +  I
Sbjct: 27  DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 86

Query: 211 MKH--GLPTQDDYGPYLGQDAYCHIA-------------------NTTATATMTGFVNVT 249
           ++    LP + +Y PY                             N   +    G+    
Sbjct: 87  IEDYGFLPAESNY-PYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYE 145

Query: 250 PNS--------EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAV 301
                         +K  +   G V   I A      +  +G      C    D  DHAV
Sbjct: 146 SERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMG-YEFSGKKVKNLC--GDDTADHAV 202

Query: 302 LAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVT 350
             VGYG     E + K YW V+NSW  YWG++GY  + +    +C      + V 
Sbjct: 203 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVI 257

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score =  239 bits (612), Expect = 2e-78
 Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 27/217 (12%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F + G+VE  Y ++  KL  LS+Q L+DCS  + N GC+GG    +++ +
Sbjct: 35  DQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCS--FKNYGCNGGLINNAFEDM 92

Query: 211 MKH-GLPTQDDYGPYLG-QDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
           ++  G+    DY PY+      C+I   T    +  +++V    ++ LK AL   GP+S+
Sbjct: 93  IELGGICPDGDY-PYVSDAPNLCNIDRCTEKYGIKNYLSVP---DNKLKEALRFLGPISI 148

Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----------ELDGKPYWQVK 318
           ++  S   F+FY  G+ +D +C +    L+HAV+ VG+G          + +   Y+ +K
Sbjct: 149 SVAVS-DDFAFYKEGI-FDGECGDQ---LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIK 203

Query: 319 NSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM 351
           NSW   WG +G++ +   ++     CG+ T      +
Sbjct: 204 NSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 240

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score =  215 bits (550), Expect = 1e-69
 Identities = 73/201 (36%), Positives = 101/201 (50%), Gaps = 17/201 (8%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F T   VE    ++   L  LS+Q L+DC     N+GC GG    +YQ+I
Sbjct: 18  NQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCD--KKNHGCLGGAFVFAYQYI 75

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           + + G+ TQ +Y PY      C  A +    ++ G+  V   +E ALK A+A   P +VA
Sbjct: 76  INNGGIDTQANY-PYKAVQGPCQ-AASKV-VSIDGYNGVPFCNEXALKQAVA-VQPSTVA 131

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           IDAS   F  Y +G++           L+H V  VGY       YW V+NSW  YWG +G
Sbjct: 132 IDASSAQFQQYSSGIFSGPCGTK----LNHGVTIVGY----QANYWIVRNSWGRYWGEKG 183

Query: 330 YVLMS--IKDNNCGVMTAPTY 348
           Y+ M        CG+   P Y
Sbjct: 184 YIRMLRVGGCGLCGIARLPYY 204

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  217 bits (554), Expect = 3e-67
 Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 16/213 (7%)

Query: 150 LDQSVCGSCWSFGTTGAVEGAYYMKHKKL--AVLSQQALIDCSWGYGNNGCDGGEDFRSY 207
            +Q+ CGSC+SF + G +E    +        +LS Q ++ CS      GC+GG  +   
Sbjct: 226 RNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCS--QYAQGCEGGFPYLIA 283

Query: 208 QWIMK-HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP----NSEDALKLALAK 262
               +  GL  +  + PY G D+ C +         + +  V       +E  +KL L  
Sbjct: 284 GKYAQDFGLVEEACF-PYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVH 342

Query: 263 HGPVSVAIDASQKSFSFYVNGVYYDEKC---NNSPDGLDHAVLAVGYGE--LDGKPYWQV 317
           HGP++VA +     F  Y  G+Y+        N  +  +HAVL VGYG     G  YW V
Sbjct: 343 HGPMAVAFEVYD-DFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIV 401

Query: 318 KNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 350
           KNSW T WG  GY  +    + C + +     T
Sbjct: 402 KNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  210 bits (536), Expect = 1e-66
 Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 35/225 (15%)

Query: 151 DQSV---CGSCWSFGTTGAVEGAYYMKHK---KLAVLSQQALIDCSWGYGNNGCDGGEDF 204
           +Q +   CGSCW+  +T A+     +K K      +LS Q +IDC        C+GG D 
Sbjct: 56  NQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCG---NAGSCEGGNDL 112

Query: 205 RSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNV-------------TPN 251
             + +  +HG+P +     Y  +D  C   N   T       +              + +
Sbjct: 113 SVWDYAHQHGIPDETCN-NYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS 171

Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
             + +   +  +GP+S  I A++   + Y  G+Y + +       ++H V   G+G  DG
Sbjct: 172 GREKMMAEIYANGPISCGIMATE-RLANYTGGIYAEYQDTTY---INHVVSVAGWGISDG 227

Query: 312 KPYWQVKNSWSTYWGNQGYVLM--------SIKDNNCGVMTAPTY 348
             YW V+NSW   WG +G++ +             N  +    T+
Sbjct: 228 TEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTF 272

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  208 bits (532), Expect = 3e-65
 Identities = 60/223 (26%), Positives = 87/223 (39%), Gaps = 31/223 (13%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMK-HKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQW 209
           DQS CGSCW+     A+   +      +   +S   L+ C    G+ GC+GG+  R++ +
Sbjct: 93  DQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPDRAWAY 151

Query: 210 IMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP------------------- 250
               GL +     PY       H  +       + F   TP                   
Sbjct: 152 FSSTGLVSDYCQ-PYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSW 210

Query: 251 -----NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVG 305
                  ED     L   GP  VA D  +  F  Y +GVY+            HAV  VG
Sbjct: 211 TSYALQGEDDYMRELFFRGPFEVAFDVYE-DFIAYNSGVYHHVSGQYL---GGHAVRLVG 266

Query: 306 YGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 348
           +G  +G PYW++ NSW+T WG  GY L+    + CG+    + 
Sbjct: 267 WGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSA 309

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  205 bits (524), Expect = 3e-64
 Identities = 56/231 (24%), Positives = 87/231 (37%), Gaps = 37/231 (16%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKL--AVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           DQ  CGSCW+FG   A+     +         +S + L+ C      +GC+GG    ++ 
Sbjct: 85  DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 144

Query: 209 WIMKHGLPTQDDYG------PYLGQDAYCHIANTTATATMTGFVNV-------------- 248
           +  + GL +   Y       PY       H+  +    T  G                  
Sbjct: 145 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 204

Query: 249 -----------TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGL 297
                        NSE  +   + K+GPV  A       F  Y +GVY            
Sbjct: 205 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVTGEMM---G 260

Query: 298 DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 348
            HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +    
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVA 311

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  202 bits (517), Expect = 8e-64
 Identities = 55/225 (24%), Positives = 84/225 (37%), Gaps = 37/225 (16%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKL--AVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           DQ  CGS W+FG   A+     +         +S + L+ C      +GC+GG    ++ 
Sbjct: 28  DQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 87

Query: 209 WIMKHGLPTQDDYG------PYLGQDAYCHIANTTATATMTGFVNV-------------- 248
           +  + GL +   Y       PY       H+       T  G                  
Sbjct: 88  FWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYK 147

Query: 249 -----------TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGL 297
                        NSE  +   + K+GPV  A       F  Y +GVY            
Sbjct: 148 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVTGEMM---G 203

Query: 298 DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
            HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 248

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score =  202 bits (515), Expect = 3e-63
 Identities = 46/236 (19%), Positives = 75/236 (31%), Gaps = 25/236 (10%)

Query: 130 NKASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALI-- 187
            K+   A+P + ++     + DQ   GSC +     A++       +    +  +  I  
Sbjct: 50  EKSVIAALPPKVDLTPPFQVYDQGRIGSCTANALAAAIQFERIHDKQSPEFIPSRLFIYY 109

Query: 188 DCSWGYGNNGCDGGEDFRSYQWIM-KHGLPTQDDYGPYLGQDAYCHIANTTATA------ 240
           +     G+   D G   R    ++ K G+  + ++ PY    A          A      
Sbjct: 110 NERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEW-PYGDTPADPRTEEFPPGAPASKKP 168

Query: 241 -----------TMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEK 289
                       +T +  V     D LK  LA   P                  V     
Sbjct: 169 SDQCYKDAQNYKITEYSRV-AQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLP 227

Query: 290 CNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS-IKDNNCGVMT 344
             N      HAVL VGY   D   +++++NSW    G  GY  M     +N  +  
Sbjct: 228 TKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQLAD 281

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score =  197 bits (503), Expect = 2e-62
 Identities = 77/208 (37%), Positives = 107/208 (51%), Gaps = 13/208 (6%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CG CW+FG TGA+EG   +   +L  +S+Q ++DC          GG+   +++W+
Sbjct: 18  DQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCD--TXXXXXXGGDADDAFRWV 75

Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           + + G+ +  +Y PY G D  C   N    A + G+ NV PNS  AL  A+A   PVSV 
Sbjct: 76  ITNGGIASDANY-PYTGVDGTCD-LNKPIAARIDGYTNV-PNSSSALLDAVA-KQPVSVN 131

Query: 270 IDASQKSFSFYVN-GVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGN 327
           I  S  SF  Y   G++    C++ P  +DH VL VGYG       YW VKNSW T WG 
Sbjct: 132 IYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGI 191

Query: 328 QGYVLMS----IKDNNCGVMTAPTYVTM 351
            GY+L+       D  C +    +Y T 
Sbjct: 192 DGYILIRRNTNRPDGVCAIDAWGSYPTK 219

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  191 bits (487), Expect = 2e-59
 Identities = 55/232 (23%), Positives = 86/232 (37%), Gaps = 39/232 (16%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKH--KKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           DQS CGSCW+FG   A+     ++   K+   LS   L+ C    G  GC+GG    ++ 
Sbjct: 24  DQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGL-GCEGGILGPAWD 82

Query: 209 WIMKHGLPTQDDYGPYLGQDAY-----------------------------CHIANTTAT 239
           + +K G+ T      + G + Y                             C     T  
Sbjct: 83  YWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPY 142

Query: 240 ATMTGFVNV---TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDG 296
                         N E A++  + K+GPV       +  F  Y +G+Y           
Sbjct: 143 TQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE-DFLNYKSGIYKHITGETL--- 198

Query: 297 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 348
             HA+  +G+G  +  PYW + NSW+  WG  GY  +    + C + +  T 
Sbjct: 199 GGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTA 250

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 297 LDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMS 334
            DH +   G   + +G  Y+ VKNSW T     G    S
Sbjct: 316 DDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYAS 354

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWG---------YGN-NGCDG 200
           +Q+  G+CW + +   +E       K    LS+   +  ++          +G+ +   G
Sbjct: 27  NQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQG 86

Query: 201 GEDFRSYQWIMKHGLPTQDDY 221
           G  + +   +   GL  +++ 
Sbjct: 87  GSFYDALYGMETFGLVPEEEM 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 9e-05
 Identities = 42/372 (11%), Positives = 99/372 (26%), Gaps = 119/372 (31%)

Query: 11  LSVGMVKT------------YQLSKNGTNGL----SLKVAPMTTETELNKISCFHAYGIP 54
           L++    +            YQ+  N T+      ++K+   + + EL ++     Y   
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--E 244

Query: 55  DATIEPQSVLPDVSDFKVNIYRLFFLRPRFHENEKI----RY--NWTYIGEELVNGIILE 108
           +  +    VL +V +     +  F L        KI    R+     ++       I L+
Sbjct: 245 NCLL----VLLNVQN--AKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISLD 292

Query: 109 KWRLVTSEGEKVSKYSLWVRYNKASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVE 168
              +  +  E  S    ++         +P   E+   N     S+              
Sbjct: 293 HHSMTLTPDEVKSLLLKYL---DCRPQDLPR--EVLTTNPRR-LSIIA------------ 334

Query: 169 GAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQW-----IMKHGLPTQDDYGP 223
                       +        +W            ++         I++  L   +   P
Sbjct: 335 ----------ESIRDGL---ATWDN----------WKHVNCDKLTTIIESSLNVLE---P 368

Query: 224 YLGQDAY--CHIANTTATATMTGF---VNVTPN----------SEDALKLA--LAKHGPV 266
              +  +    +           F    ++               D + +   L K+   
Sbjct: 369 AEYRKMFDRLSV-----------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-- 415

Query: 267 SVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ-VKNSWSTYW 325
              ++   K  +  +  +Y + K     +   H  +   Y           +      Y+
Sbjct: 416 --LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 326 GNQ-GYVLMSIK 336
            +  G+ L +I+
Sbjct: 474 YSHIGHHLKNIE 485

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	100.0
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	100.0
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	100.0
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	100.0
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	100.0
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	100.0
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	100.0
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	100.0
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	100.0
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	100.0
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	100.0
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	100.0
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	100.0
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	100.0
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	100.0
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	100.0
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	100.0
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	100.0
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	100.0
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	100.0
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	100.0
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	100.0
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	100.0
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	100.0
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	100.0
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	100.0
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	100.0
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	100.0
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	100.0
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	100.0
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	100.0
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	100.0
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	100.0
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	100.0
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	100.0
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	100.0
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	100.0
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	100.0
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	100.0
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	100.0
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	100.0
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	100.0
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	100.0
1pxv_A	183	Cysteine protease; hydrolase; 1.80A {Staphylococcu	97.55
1x9y_A	367	Cysteine proteinase; half-barrel, barrel-sandwich-	97.31
1cv8_A	174	Staphopain; cysteine protease, thiol protease, pap	97.1
3erv_A	236	Putative C39-like peptidase; structural genomics,	90.44
4d8b_A	261	Streptopain; papain fold, cysteine protease, secre	80.15

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=100.00  E-value=2e-62  Score=472.83  Aligned_cols=250  Identities=37%  Similarity=0.726  Sum_probs=216.9

Q ss_pred             cccceeecCeeccceeeccccCc---ccceeE-EEEEccCCCCCCcCcceeecC--CCccccCCccCchhhhhhHHHHHH
Q psy3960          96 YIGEELVNGIILEKWRLVTSEGE---KVSKYS-LWVRYNKASKDAIPVRYEMKG--YNSLLDQSVCGSCWSFGTTGAVEG  169 (351)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~plP~~~d~r~--~~~v~dQg~cGSCWAfA~~~alE~  169 (351)
                      .+|++.|.|++.++|+. +....   ...... .-..... ...++|.+||||.  ..+|+|||.||||||||++++||+
T Consensus        73 ~lg~N~FaDlt~eEf~~-~~g~~~~~~~~~~~~~~~~~~~-~~~~lP~~~DwR~~~vtpVkdQg~CGSCWAFaa~~alE~  150 (329)
T 3qt4_A           73 SKAMNQFGDMSKEEFLA-YVNRGKAQKPKHPENLRMPYVS-SKKPLAASVDWRSNAVSEVKDQGQCGSSWSFSTTGAVEG  150 (329)
T ss_dssp             EECCCGGGGCCHHHHHH-HHHHTCCC------CCEEECCC-CCSCCCSCEECTTTSCCCCCBCCSSBCHHHHHHHHHHHH
T ss_pred             EEeccccccCCHHHHHH-hcCCcccccccccccccccccC-CccCCCCCEEccccccCCCccCCCCcChHHHHHHHHHHH
Confidence            47899999999999976 42111   000000 0011111 1246888888886  458899999999999999999999


Q ss_pred             HHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEec
Q psy3960         170 AYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVT  249 (351)
Q Consensus       170 ~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~  249 (351)
                      ++++++++++.||+|+|+||+..+++.||+||++..|++|+.++||++|++| ||.+.++.|+.......+++++|..++
T Consensus       151 ~~~i~~g~~~~LSeQ~LvdC~~~~g~~GC~GG~~~~a~~yi~~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~v~  229 (329)
T 3qt4_A          151 QLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAY-PYEAQGDYCRFDSSQSVTTLSGYYDLP  229 (329)
T ss_dssp             HHHHHHSCCCCBCHHHHHHHCGGGTCCTTBCCCHHHHHHHHHHSCBCBTTTS-CCCSSCCCCCCCGGGCCBCCSEEEECC
T ss_pred             HHHHHcCCcccCCHHHHHHhccccCCCCCCCCChhHHHHHHHHcCCCcHHHe-eeecCCCCCCCCcccceEEeceEEEec
Confidence            9999999999999999999997667899999999999999999999999999 999999999987777788999999998


Q ss_pred             CCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCc
Q psy3960         250 PNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG  329 (351)
Q Consensus       250 ~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~G  329 (351)
                      ..++++||++|+++|||+|+|++. .+|++|++|||..+.|...  .++|||+|||||+++|++|||||||||++||++|
T Consensus       230 ~~~e~~lk~al~~~GPV~v~i~a~-~~f~~Y~~GVy~~~~c~~~--~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~G  306 (329)
T 3qt4_A          230 SGDENSLADAVGQAGPVAVAIDAT-DELQFYSGGLFYDQTCNQS--DLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESG  306 (329)
T ss_dssp             TTCHHHHHHHHHHTCCEEEEECCC-GGGTTEEEEEECCSSCCSS--CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTT
T ss_pred             CCCHHHHHHHHHhCCCEEEEEecC-hhhhhccCceeecCCCCCC--cCCEEEEEEEEEeeCCccEEEEEeCCCCcccCCc
Confidence            889999999999999999999998 5999999999999888643  6899999999999999999999999999999999


Q ss_pred             EEEEEecC-CeeeecCCcEEeeC
Q psy3960         330 YVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       330 Y~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                      ||||+|+. |.|||++.|+||+|
T Consensus       307 Y~~i~r~~~n~CgI~~~~~yp~v  329 (329)
T 3qt4_A          307 YWRQVRNYGNNCGIATAASYPAL  329 (329)
T ss_dssp             EEEEESSSSSGGGTTTTCEEEEC
T ss_pred             EEEEEeCCCCccCCCCceeEeeC
Confidence            99999987 99999999999986

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=100.00  E-value=2.9e-61  Score=439.13  Aligned_cols=210  Identities=45%  Similarity=0.879  Sum_probs=194.2

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.  + .+|+|||.||||||||++++||+++++++++.++||+|+|+||+.  .+.||+||++..|++|+.++
T Consensus         1 lP~~~Dwr~~~~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~~~~~lS~q~l~dc~~--~~~gC~GG~~~~a~~~~~~~   78 (215)
T 3kwz_A            1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKN   78 (215)
T ss_dssp             CTTCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCCCccCcCCCCCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcC--CCCCCCCCCHHHHHHHHHHh
Confidence            466666665  3 488999999999999999999999999999999999999999996  68899999999999999988


Q ss_pred             -CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 -GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                       |+++|++| ||.+.++.|+.......+++++|..++..++++||++|+++|||+++|++.+++|++|++|||..+.|..
T Consensus        79 ~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~  157 (215)
T 3kwz_A           79 RGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS  157 (215)
T ss_dssp             TCEEBTTTS-CCCSSCCCCCCCGGGEEECCCCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCT
T ss_pred             CCccccccC-CCccCCCccccCCCCceeEecceEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECCCCCCC
Confidence             99999999 9999999999877777889999999987799999999999999999999986799999999999888854


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC-CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                      .  .++|||+|||||++++++|||||||||++||++|||||+|+. |.|||++.++||+|
T Consensus       158 ~--~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~r~~~n~Cgi~~~~~~p~~  215 (215)
T 3kwz_A          158 D--NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             T--CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEECC
T ss_pred             C--hhhCEEEEEEEeccCCceEEEEECCcCcccccCCEEEEecCCCCccCcCCceeeeeC
Confidence            3  689999999999999999999999999999999999999986 89999999999986

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=100.00  E-value=2.6e-61  Score=440.96  Aligned_cols=212  Identities=40%  Similarity=0.809  Sum_probs=196.2

Q ss_pred             cCcceeec--C--CCccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHH
Q psy3960         137 IPVRYEMK--G--YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMK  212 (351)
Q Consensus       137 lP~~~d~r--~--~~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~  212 (351)
                      +|.+||+|  +  ..+|+||+.||||||||++++||+++++++++.++||+|+|+||+....+.||+||++..|++|+++
T Consensus         1 lP~~~DwR~~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~   80 (220)
T 8pch_A            1 YPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRY   80 (220)
T ss_dssp             CCSCEEHHHHSSCSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHGGGGTCCGGGCCCHHHHHHHHHH
T ss_pred             CCCCEecCcCCCcCCcccccCCCchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhCcCccCCCCCCCCCHHHHHHHHHH
Confidence            35556666  4  3588999999999999999999999999999999999999999997666899999999999999999


Q ss_pred             c-CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCC
Q psy3960         213 H-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN  291 (351)
Q Consensus       213 ~-Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~  291 (351)
                      + |+++|++| ||.+.++.|+.......+++++|..++..++++||++|+++|||+++|+++ ++|++|++|||..+.|.
T Consensus        81 ~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~Y~~Giy~~~~~~  158 (220)
T 8pch_A           81 NKGIMGEDTY-PYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT-NDFLMYRKGIYSSTSCH  158 (220)
T ss_dssp             HTCEEBTTTS-CCCSSCCCCCCCGGGEEECEEEEEECCTTCHHHHHHHHHHTCCEEEEECCC-HHHHTCCSSEECCSSCC
T ss_pred             cCCcCccccc-CccCCCCCCCCCCCcceEEeCCEEEeCCCCHHHHHHHHHhcCCEEEEEEec-cchhhcCCCcccCCcCC
Confidence            8 99999999 999999999987777788999999998889999999999999999999998 69999999999988887


Q ss_pred             CCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEee
Q psy3960         292 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT  350 (351)
Q Consensus       292 ~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~~  350 (351)
                      .....++|||+|||||+++|++|||||||||++||++|||||+|+.|.|||+++++||+
T Consensus       159 ~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~~~~  217 (220)
T 8pch_A          159 KTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI  217 (220)
T ss_dssp             CSTTTCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEEE
T ss_pred             CCCCcCCcEEEEEEEEccCCeeEEEEECCCCcCcccCCEEEEEcCCCccccCCCceeEe
Confidence            65457899999999999999999999999999999999999999999999999999997

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=100.00  E-value=2e-61  Score=466.48  Aligned_cols=250  Identities=30%  Similarity=0.598  Sum_probs=214.6

Q ss_pred             cccceeecCeeccceeeccccCc----ccceeEEEEEcc---CCCCCCcCcceeecC--C-CccccCCccCchhhhhhHH
Q psy3960          96 YIGEELVNGIILEKWRLVTSEGE----KVSKYSLWVRYN---KASKDAIPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTG  165 (351)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~plP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~  165 (351)
                      .++++.|.|++.++|+..+....    .......+....   ......+|.+||||.  + .+|+|||.||||||||+++
T Consensus        68 ~lg~N~FaDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGSCWAFaa~~  147 (331)
T 3qj3_A           68 TLGVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTG  147 (331)
T ss_dssp             EECCSTTTTCCHHHHHHHHSCCCCCSSTTTTCEEECSGGGGTCCSSCCCCSSEEGGGGTCSCCCCBCCSSCCHHHHHHHH
T ss_pred             eecccccccCCHHHHHHHhccccccccccccCcccccccccccccccCCCcceecccCCccCCCccCcccchhhHHHHHH
Confidence            37899999999999976543111    111111111110   001235677777774  4 4889999999999999999


Q ss_pred             HHHHHHHHhcCC--ceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc-CCCCCCCCCCCCCCCCccccCCCCceeeE
Q psy3960         166 AVEGAYYMKHKK--LAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATM  242 (351)
Q Consensus       166 alE~~~~~~~g~--~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~-Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i  242 (351)
                      +||+++++++++  ++.||+|+|+||+..  +.||+||++..|++|+.++ ||++|++| ||.+.++.|+.......+++
T Consensus       148 alE~~~~i~~g~~~~~~LSeQ~LvdC~~~--~~GC~GG~~~~a~~yi~~~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i  224 (331)
T 3qj3_A          148 AIESQMKIANGAGYDSSVSEQQLVDCVPN--ALGCSGGWMNDAFTYVAQNGGIDSEGAY-PYEMADGNCHYDPNQVAARL  224 (331)
T ss_dssp             HHHHHHHHHHCTTSCCCBCHHHHHHHCTT--SCGGGCCCHHHHHHHHHHHTCEEBTTTS-CCCSSCCCCCCCTTSEEECC
T ss_pred             HHHHHHHHHhCCCcccCcCHHHHhhhccC--CCCCCCCCHHHHHHHHHHcCCcCccccc-CccCCCCCCCCCcccceeEe
Confidence            999999999998  899999999999963  8899999999999999999 99999999 99999999998888888999


Q ss_pred             eeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCC
Q psy3960         243 TGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWS  322 (351)
Q Consensus       243 ~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG  322 (351)
                      ++|..++..++++||++|+++|||+|+|++.. .|++|++|||..+.|...  .++|||+|||||+++|++|||||||||
T Consensus       225 ~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~-~f~~Y~~Gvy~~~~c~~~--~~~HaV~iVGyg~~~g~~yWivkNSWG  301 (331)
T 3qj3_A          225 SGYVYLSGPDENMLADMVATKGPVAVAFDADD-PFGSYSGGVYYNPTCETN--KFTHAVLIVGYGNENGQDYWLVKNSWG  301 (331)
T ss_dssp             SEEEEESSCCHHHHHHHHHHHCCEEEEECCCT-TGGGEEEEEECCTTCCSS--CCCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             eEEEEeCCCCHHHHHHHHHhCCCEEEEEEccc-ccccccCceEeCCCCCCC--cCCEEEEEEEEeccCCceEEEEEcCCC
Confidence            99999988899999999999999999999984 499999999999888643  689999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC-CeeeecCCcEEeeC
Q psy3960         323 TYWGNQGYVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       323 ~~WG~~GY~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                      ++||++|||||+|+. |.|||++.++||+|
T Consensus       302 ~~WGe~GY~~i~r~~~n~CgI~~~~~~p~v  331 (331)
T 3qj3_A          302 DGWGLDGYFKIARNANNHCGIAGVASVPTL  331 (331)
T ss_dssp             TTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCcCCCCEEEEEcCCCCccCcCCceeeeeC
Confidence            999999999999987 99999999999986

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=100.00  E-value=3.6e-61  Score=439.39  Aligned_cols=211  Identities=40%  Similarity=0.830  Sum_probs=194.5

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhc-CCCCCCCCCCCchHHHHHHHHH
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCS-WGYGNNGCDGGEDFRSYQWIMK  212 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~-~~~~~~gC~GG~~~~a~~~l~~  212 (351)
                      +|.+||+|.  + .||+||+.||||||||++++||+++++++++.++||+|+|++|+ +..++.||+||++..|++|+.+
T Consensus         2 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a~~~~~~   81 (218)
T 3ovx_A            2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID   81 (218)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCCCHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHcCCccccCHHHheeccCCcCCCCCCCCCCHHHHHHHHHH
Confidence            566666665  4 48899999999999999999999999999999999999999998 5556899999999999999976


Q ss_pred             -cCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCC
Q psy3960         213 -HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN  291 (351)
Q Consensus       213 -~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~  291 (351)
                       +|+++|++| ||.+.++.|+.......+++.+|..++..++++||++|+++|||+++|++..++|++|++|||..+.|.
T Consensus        82 ~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~  160 (218)
T 3ovx_A           82 NKGIDSDASY-PYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT  160 (218)
T ss_dssp             HTCEEBTTTS-CCCSSCCCCCCCGGGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECCTTCC
T ss_pred             hCCcCccccc-CccCCCCcccCCCccceeeeccEEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecCCCCC
Confidence             699999999 999999999987777888999999998789999999999999999999998668999999999988883


Q ss_pred             CCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC-CeeeecCCcEEeeC
Q psy3960         292 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       292 ~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                      .   .++|||+|||||+++|++|||||||||++||++|||||+|+. |+|||+++++||+|
T Consensus       161 ~---~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  218 (218)
T 3ovx_A          161 Q---NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  218 (218)
T ss_dssp             S---CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             c---ccCcEEEEEEEeccCCceEEEEECCCCCccccCCEEEEecCCCCcccccCceeeeeC
Confidence            3   689999999999999999999999999999999999999987 99999999999986

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=100.00  E-value=1.5e-61  Score=463.72  Aligned_cols=247  Identities=34%  Similarity=0.695  Sum_probs=210.0

Q ss_pred             ccceeecCeeccceeecccc--Cc-ccc--eeEEEEEccCCCCCCcCcceeecC--C-CccccCCccCchhhhhhHHHHH
Q psy3960          97 IGEELVNGIILEKWRLVTSE--GE-KVS--KYSLWVRYNKASKDAIPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVE  168 (351)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~--~~-~~~--~~~~~~~~~~~~~~plP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE  168 (351)
                      ++.+.|.|++.++|...+..  .. ...  ...   .... ....+|.+||+|.  . .+|+|||.||||||||++++||
T Consensus        51 ~g~N~F~Dlt~eEf~~~~~g~~~~~~~~~~~~~---~~~~-~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAfa~~~alE  126 (310)
T 2o6x_A           51 LGLNQFTDMTFEEFKAKYLTEMSRASDILSHGV---PYEA-NNRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTME  126 (310)
T ss_dssp             ECCCTTTTSCHHHHHHHHCCCCCCGGGGSCSSE---ECCC-----CCSCEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHH
T ss_pred             EeccccCCCCHHHHHHHhcCCCCCcccccccCC---cccc-ccCCCCCeEecCcCCCCCCcccCCCCCccHHHHhHHHHH
Confidence            47888999998888643321  11 000  001   0111 1124777777775  3 4889999999999999999999


Q ss_pred             HHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEe
Q psy3960         169 GAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNV  248 (351)
Q Consensus       169 ~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v  248 (351)
                      +++++++++.+.||+|+|+||+..+++.||+||++..|++|+.+.||++|++| ||.+.++.|+.......++|++|..|
T Consensus       127 ~~~~i~~g~~~~LS~q~lvdC~~~~~~~gC~GG~~~~a~~yi~~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~v  205 (310)
T 2o6x_A          127 GQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGLETESSY-PYTAVEGQCRYNKQLGVAKVTGFYTV  205 (310)
T ss_dssp             HHHHHHHSSCCCBCHHHHHHHCGGGTCCGGGCCCHHHHHHHHTTSCBCBTTTS-CCCSSCCCCCCCGGGCCEEEEEEEEE
T ss_pred             HHHHHHhCCCcCcCHHHHHHhhhccCCCCCCCCCHHHHHHHHHHCCcCchhcC-CCCCCCCCccCCCCCCceEeCeEEEe
Confidence            99999999999999999999996556899999999999999997799999999 99999999997666667899999999


Q ss_pred             cCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCC
Q psy3960         249 TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ  328 (351)
Q Consensus       249 ~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~  328 (351)
                      +..++++||++|+++|||+|+|+++ ++|++|++|||..+.|+..  .++|||+|||||+++|++|||||||||++||++
T Consensus       206 ~~~~~~~i~~~l~~~GPV~v~i~~~-~~f~~Y~~Gvy~~~~c~~~--~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~  282 (310)
T 2o6x_A          206 HSGSEVELKNLVGAEGPAAVAVDVE-SDFMMYRSGIYQSQTCSPL--RVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGER  282 (310)
T ss_dssp             CSCCHHHHHHHHHHHCCEEEEECCC-HHHHTEEEEEECCSSCCTT--CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBT
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEecc-hhhhhCCCceecCCCCCCC--CCCEEEEEEEEeccCCceEEEEEeCCCCccCCC
Confidence            8789999999999999999999998 6999999999998888643  689999999999999999999999999999999


Q ss_pred             cEEEEEecC-CeeeecCCcEEeeC
Q psy3960         329 GYVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       329 GY~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                      |||||+|+. |.|||+++++||++
T Consensus       283 GY~~i~r~~~n~Cgi~~~~~~p~~  306 (310)
T 2o6x_A          283 GYIRMVRNRGNMCGIASLASLPMV  306 (310)
T ss_dssp             TEEEEECSSSSGGGTTTSEEEEEE
T ss_pred             cEEEEEcCCCCcCCccceeeEEEe
Confidence            999999986 88999999999974

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=100.00  E-value=1e-60  Score=437.16  Aligned_cols=211  Identities=43%  Similarity=0.855  Sum_probs=191.6

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHH-H
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM-K  212 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~-~  212 (351)
                      +|.+||+|.  + .+|+||+.||||||||++++||+++++++++.++||+|+|+||+..+++.||+||++..|++|+. +
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~~y~~~~   80 (220)
T 2xu3_A            1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN   80 (220)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTTTCCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcEeCCCCCCCCCCcccCcccHHHHHHhHHHHHHHHHHhcCCceecCHHHHHhhccCCCCCCCCCCCHHHHHHHHHHh
Confidence            466666664  4 48899999999999999999999999999999999999999999766689999999999999996 6


Q ss_pred             cCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         213 HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       213 ~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      +|+++|++| ||.+.++.|+.......+++++|..++. ++++||++|+++|||+++|++..++|++|++|||..+.|..
T Consensus        81 ~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~v~~-~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~~c~~  158 (220)
T 2xu3_A           81 GGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSS  158 (220)
T ss_dssp             TCEEBTTTS-CCCSSCCCCCCCGGGEEECCSEEEECCS-CHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCS
T ss_pred             CCccccccc-CCcccCcCccCCCCCcceeeeeEEEeCC-CHHHHHHHHHhcCCEEEEEeecCcccccccceEEcCCCCCC
Confidence            799999999 9999999998766667789999999977 89999999999999999999985689999999998877864


Q ss_pred             CCCCCCeEEEEEEEe----eeCCeeEEEEEcCCCCCCCCCcEEEEEecC-CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg----~~~g~~ywivkNSWG~~WG~~GY~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                      .  .++|||+|||||    +++|++|||||||||++||++|||||+|+. |.|||+++++||++
T Consensus       159 ~--~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~~~p~~  220 (220)
T 2xu3_A          159 E--DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  220 (220)
T ss_dssp             S--CCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             C--CCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCcccCcEEEEecCCCCcCCccccceeeeC
Confidence            3  689999999999    567899999999999999999999999986 88999999999986

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=100.00  E-value=1.7e-61  Score=464.48  Aligned_cols=248  Identities=35%  Similarity=0.708  Sum_probs=210.6

Q ss_pred             ccceeecCeeccceeeccccC---cccceeEEEEEccCCCCCCcCcceeecC---CCccccCCccCchhhhhhHHHHHHH
Q psy3960          97 IGEELVNGIILEKWRLVTSEG---EKVSKYSLWVRYNKASKDAIPVRYEMKG---YNSLLDQSVCGSCWSFGTTGAVEGA  170 (351)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~plP~~~d~r~---~~~v~dQg~cGSCWAfA~~~alE~~  170 (351)
                      ++++.|.|++.++|...+...   .......   .........+|.+||+|.   ..+|+|||.||||||||++++||++
T Consensus        59 ~g~N~FaDlt~eEf~~~~~g~~~~~~~~~~~---~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAfs~~~alE~~  135 (315)
T 2c0y_A           59 LGMNHLGDMTSEEVMSLMSSLRVPSQWQRNI---TYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQ  135 (315)
T ss_dssp             ECCCGGGGCCHHHHHHHTTSBCCCCGGGSCB---CC------CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHH
T ss_pred             eccCccccCCHHHHHHHhcCCCCCccccCCc---cccCcccCCCCCeEecCCCCCcCCCcCcccCCCcHHHHHHHHHHHH
Confidence            578889999998885433211   0000000   000111235788888775   3488999999999999999999999


Q ss_pred             HHHhcCCceecCHHHHhhhc-CCCCCCCCCCCchHHHHHHHHH-cCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEe
Q psy3960         171 YYMKHKKLAVLSQQALIDCS-WGYGNNGCDGGEDFRSYQWIMK-HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNV  248 (351)
Q Consensus       171 ~~~~~g~~~~LS~q~l~dc~-~~~~~~gC~GG~~~~a~~~l~~-~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v  248 (351)
                      +++++|+.+.||+|+|+||+ ..+++.||+||++..|++|+.+ .||++|++| ||.+.++.|+.......++|++|..+
T Consensus       136 ~~i~~g~~~~LSeq~lvdC~~~~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~v  214 (315)
T 2c0y_A          136 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY-PYKAMDQKCQYDSKYRAATCSKYTEL  214 (315)
T ss_dssp             HHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTS-CCCSSCCCCCCCGGGEEECCCEEEEC
T ss_pred             HHHHhCCCcCcCHHHHHhhcccccCCCCCCCCCHHHHHHHHHHhCCcCchhcC-CCccCCCCcccCCcccccccCCeEEe
Confidence            99999999999999999998 5556899999999999999995 699999999 99999999997666667899999999


Q ss_pred             cCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCC
Q psy3960         249 TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ  328 (351)
Q Consensus       249 ~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~  328 (351)
                      +..++++||++|+++|||+|+|++++++|++|++|||..+.|+.   .++|||+|||||+++|++|||||||||++||++
T Consensus       215 ~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~---~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~  291 (315)
T 2c0y_A          215 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ---NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEE  291 (315)
T ss_dssp             CTTCHHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEECCTTCCS---CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBT
T ss_pred             CCCCHHHHHHHHHHcCCEEEEEecCchhhhccCCCcccCCCCCC---cCCEEEEEEEEeecCCCcEEEEEcCCCCCcCCC
Confidence            88899999999999999999999986789999999999888865   689999999999999999999999999999999


Q ss_pred             cEEEEEec-CCeeeecCCcEEeeC
Q psy3960         329 GYVLMSIK-DNNCGVMTAPTYVTM  351 (351)
Q Consensus       329 GY~~Is~~-~n~cgi~~~~~~~~~  351 (351)
                      |||||+|+ .|.|||++.|+||++
T Consensus       292 GY~~i~r~~~n~CgI~~~~~~p~~  315 (315)
T 2c0y_A          292 GYIRMARNKGNHCGIASFPSYPEI  315 (315)
T ss_dssp             TEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             cEEEEEcCCCCccCcCceeEEeeC
Confidence            99999998 489999999999986

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=100.00  E-value=5.3e-61  Score=461.15  Aligned_cols=249  Identities=37%  Similarity=0.734  Sum_probs=210.7

Q ss_pred             ccceeecCeeccceeecccc-CcccceeEEEEEccCCCCCCcCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHH
Q psy3960          97 IGEELVNGIILEKWRLVTSE-GEKVSKYSLWVRYNKASKDAIPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYY  172 (351)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~plP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~  172 (351)
                      ++.+.|.|++.++|...... .........  .........+|.+||+|.  . .+|+|||.||||||||++++||++++
T Consensus        58 ~g~N~F~Dlt~eEf~~~~~g~~~~~~~~~~--~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~  135 (316)
T 1cs8_A           58 MAMNAFGDMTSEEFRQVMNGFQNRKPRKGK--VFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMF  135 (316)
T ss_dssp             ECCCTTTTCCHHHHHHHHCCBCCCCCSCCE--ECCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHH
T ss_pred             EccCccCCCCHHHHHHHhcCCCCCccccCc--cccCccccCCCCcEecCCCCCcCCCCcccCCccHHHHHHHHHHHHHHH
Confidence            58889999999888643321 100000000  111112335777777775  3 48899999999999999999999999


Q ss_pred             HhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHH-HcCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCC
Q psy3960         173 MKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM-KHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPN  251 (351)
Q Consensus       173 ~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~-~~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~  251 (351)
                      +++|+.+.||+|+|+||+..+++.||+||++..|++|+. +.|+++|++| ||.+.++.|+.......+++++|..|+. 
T Consensus       136 i~~g~~~~LSeq~lvdC~~~~g~~gC~GG~~~~a~~yi~~~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~v~~-  213 (316)
T 1cs8_A          136 RKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDIPK-  213 (316)
T ss_dssp             HHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTS-CCCSSCCCCCCCGGGEEECCCCEEECCS-
T ss_pred             HHcCCCcCcCHHHHHHhccccCCCCCCCCCHHHHHHHHHHhCCcCchhcc-CCCCCCCCcCCCCccceeEeccEEEeCC-
Confidence            999999999999999999655689999999999999997 6699999999 9999999999776667789999999987 


Q ss_pred             CHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEe---ee-CCeeEEEEEcCCCCCCCC
Q psy3960         252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG---EL-DGKPYWQVKNSWSTYWGN  327 (351)
Q Consensus       252 ~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg---~~-~g~~ywivkNSWG~~WG~  327 (351)
                      ++++||++|+++|||+|+|++++++|++|++|||..+.|+..  .++|||+|||||   ++ +|++|||||||||++||+
T Consensus       214 ~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~--~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe  291 (316)
T 1cs8_A          214 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE--DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM  291 (316)
T ss_dssp             CHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCTTCCSS--CCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTB
T ss_pred             CHHHHHHHHHhcCCEEEEEecCChhhccccCceECCCCCCCC--CCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCccc
Confidence            899999999999999999999866899999999998878653  689999999999   66 789999999999999999


Q ss_pred             CcEEEEEecC-CeeeecCCcEEeeC
Q psy3960         328 QGYVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       328 ~GY~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                      +|||||+|+. |.|||++.++||++
T Consensus       292 ~GY~~i~r~~~n~CgI~~~~~~p~~  316 (316)
T 1cs8_A          292 GGYVKMAKDRRNHCGIASAASYPTV  316 (316)
T ss_dssp             TTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             CCEEEEECCCCCccCccceeeEeeC
Confidence            9999999986 88999999999986

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=100.00  E-value=3.8e-61  Score=461.81  Aligned_cols=250  Identities=38%  Similarity=0.705  Sum_probs=209.7

Q ss_pred             ccceeecCeeccceeeccccCcccc-eeEEEEEccCCCC-CCcCcceeecC--C-CccccCCccCchhhhhhHHHHHHHH
Q psy3960          97 IGEELVNGIILEKWRLVTSEGEKVS-KYSLWVRYNKASK-DAIPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAY  171 (351)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~plP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~  171 (351)
                      ++.+.|.|++.++|...+....... ............. .++|.+||+|.  . .+|+|||.||||||||++++||+++
T Consensus        58 ~g~N~FaDlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFs~~~alE~~~  137 (314)
T 1by8_A           58 LAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQL  137 (314)
T ss_dssp             ECCCTTSSSCHHHHHHHSCCCCCCSCCCCSSSSSBCCCCSSCCCSCCBSTTTTCSCCCCBCCSSSCHHHHHHHHHHHHHH
T ss_pred             EcccccccCCHHHHHHHhccCCCCcccccCCccccccccccCCCCeEeCCCCCCCCCcccCCCCCCcHHHHHHHHHHHHH
Confidence            5788999999988854332111000 0000000111112 22677777775  3 4889999999999999999999999


Q ss_pred             HHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHH-cCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecC
Q psy3960         172 YMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMK-HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP  250 (351)
Q Consensus       172 ~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~-~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~  250 (351)
                      ++++|+.+.||+|+|+||+.  ++.||+||++..|++|+.+ .||++|++| ||.+.++.|+.......++|++|..++.
T Consensus       138 ~i~~g~~~~LSeq~lvdC~~--~~~gC~GG~~~~a~~yi~~~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~v~~  214 (314)
T 1by8_A          138 KKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPE  214 (314)
T ss_dssp             HHHHSCCCCBCHHHHHTTCT--TSCGGGCCCSHHHHHHHHHTTCBCBTTTS-CCCSSCCCCCCCGGGCCBCCSCEEECCS
T ss_pred             HHhcCCCcccCHHHHHHhcC--CCCCCcCCCHHHHHHHHHHcCCcCcHhhC-CCCCCCCCcCCCCccceeEECcEEEecC
Confidence            99999999999999999985  6899999999999999985 599999999 9999999998766666789999999988


Q ss_pred             CCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcE
Q psy3960         251 NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY  330 (351)
Q Consensus       251 ~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY  330 (351)
                      .++++||++|+++|||+|+|++++++|++|++|||..+.|+..  .++|||+|||||+++|++|||||||||++||++||
T Consensus       215 ~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~--~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY  292 (314)
T 1by8_A          215 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD--NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGY  292 (314)
T ss_dssp             SCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEECBCCTTCCSS--CCCEEEEEEEEEEETTEEEEEEECSBTTTSTBTTE
T ss_pred             CCHHHHHHHHHHcCCEEEEEEeChHHhhhccCceecCCCCCCC--CCCeEEEEEEEeccCCceEEEEEcCCCCCcCcCCE
Confidence            8999999999999999999999867999999999998888653  68999999999999999999999999999999999


Q ss_pred             EEEEec-CCeeeecCCcEEeeC
Q psy3960         331 VLMSIK-DNNCGVMTAPTYVTM  351 (351)
Q Consensus       331 ~~Is~~-~n~cgi~~~~~~~~~  351 (351)
                      |||+|+ .|.|||++.++||++
T Consensus       293 ~~i~r~~~n~CgI~~~~~~p~~  314 (314)
T 1by8_A          293 ILMARNKNNACGIANLASFPKM  314 (314)
T ss_dssp             EEECCSSSCGGGTTSSCEEECC
T ss_pred             EEEEcCCCCcCCccCeeEEeeC
Confidence            999998 489999999999986

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=100.00  E-value=2.3e-59  Score=427.25  Aligned_cols=207  Identities=34%  Similarity=0.710  Sum_probs=188.1

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.  . .+|+||+.||||||||++++||+++++++++.++||+|+|+||+.  .+.||+||++..|++|++++
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~yi~~~   78 (216)
T 1ppo_A            1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER--RSHGCKGGYPPYALEYVAKN   78 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCS--SSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcCcCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHccCCceecCHHHHHhccC--CCCCCCCCCHHHHHHHHHHh
Confidence            466667665  3 488999999999999999999999999999999999999999985  57899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccccCCC-CceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 GLPTQDDYGPYLGQDAYCHIANT-TATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 Gi~~e~~y~PY~~~~~~C~~~~~-~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      |+++|++| ||.+.++.|+.... ...+++.+|..++..++++||++|++ |||+++|++++++|++|++|||.. +|..
T Consensus        79 Gi~~e~~y-PY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~~-~~~~  155 (216)
T 1ppo_A           79 GIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEG-PCGT  155 (216)
T ss_dssp             CBCBTTTS-CCCSSCCCCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECC-SCCS
T ss_pred             CcCccccC-CccCCCCCcCCCCCCCceEEeccEEEECCCCHHHHHHHHHh-CCEEEEEecCChhhhhcCCceECC-CCCC
Confidence            99999999 99999999987643 56789999999988889999999998 999999999757999999999975 5754


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||+++|++|||||||||++||++|||||+|+.    |.|||+++++||++
T Consensus       156 ---~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~~~p~~  215 (216)
T 1ppo_A          156 ---KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  215 (216)
T ss_dssp             ---CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred             ---CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEEcCCCCCCCcCccccceeeEee
Confidence               479999999999999999999999999999999999999984    89999999999986

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=100.00  E-value=2.8e-59  Score=428.02  Aligned_cols=207  Identities=35%  Similarity=0.753  Sum_probs=189.6

Q ss_pred             cCcceeecC---CCccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG---YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~---~~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.   ..+|+||+.||||||||++++||+++++++++.++||+|+|+||+..  +.||+||++..||+|++++
T Consensus         3 lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~y~~~~   80 (221)
T 1cqd_A            3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA--NHGCRGGWMNPAFQFIVNN   80 (221)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT--SCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcCcCCCCCCcCCcccCCCCccHHHHHHHHHHHHHHHHhcCCeeeeccceeEECCCC--CCCCCCCCHHHHHHHHHHh
Confidence            677777776   34889999999999999999999999999999999999999999853  7899999999999999998


Q ss_pred             -CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 -GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                       |+++|++| ||.+.++.|+.......+++++|..++..++++||++|++ |||+++|++..++|++|++|||.. .|..
T Consensus        81 ~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~-~~~~  157 (221)
T 1cqd_A           81 GGINSEETY-PYRGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTG-SCNI  157 (221)
T ss_dssp             TSBCBTTTS-CCCSSCCCCCSSSCCCSBCCSEEEECCSSCHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECC-CCCC
T ss_pred             CCccccccC-CccCCCCCcCCCCCCceEEeccEEEeCCchHHHHHHHHHh-CCEEEEEeccCcccccccCccccC-CCCC
Confidence             99999999 9999999998776677789999999988889999999986 999999999867899999999976 5754


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEec----CCeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIK----DNNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~----~n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||+++|++|||||||||++||++|||||+|+    .|.|||+++++||++
T Consensus       158 ---~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  217 (221)
T 1cqd_A          158 ---SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVK  217 (221)
T ss_dssp             ---CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             ---cCCeEEEEEEEcccCCCcEEEEEeCCCCCcccCCEEEEEcCCCCCCcccceeeeeeEEEe
Confidence               58999999999999999999999999999999999999997    488999999999985

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=100.00  E-value=1.2e-59  Score=430.88  Aligned_cols=210  Identities=42%  Similarity=0.833  Sum_probs=192.8

Q ss_pred             CcCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHH
Q psy3960         136 AIPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMK  212 (351)
Q Consensus       136 plP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~  212 (351)
                      .+|.+||+|.  + .+|+||+.||||||||++++||+++++++++.++||+|+|++|+...++.||+||.+..|++|+.+
T Consensus         6 ~lP~~~Dwr~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~GG~~~~a~~~~~~   85 (224)
T 3f75_A            6 ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLD   85 (224)
T ss_dssp             GSCSCEEHHHHTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHHH
T ss_pred             CCCCceecccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCCCCHHHHHHHHHH
Confidence            4677777774  3 488999999999999999999999999999999999999999997556899999999999999998


Q ss_pred             -cCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCC
Q psy3960         213 -HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN  291 (351)
Q Consensus       213 -~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~  291 (351)
                       +|+++|++| ||.+.++.|+.......+++.+|..++..++++||++|+ +|||+++|++..++|++|++|||. +.|.
T Consensus        86 ~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~-~~~~  162 (224)
T 3f75_A           86 SGGICSEDAY-PYLARDEECRAQSCEKVVKILGFKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFD-ASCG  162 (224)
T ss_dssp             HTCBCBTTTS-CCCSSCCCCCGGGSCCCBCCSEEEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEEC-CCCC
T ss_pred             hCCccccccC-CCcCCCCCCCcCCCCceEEeccEEEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCccceEC-CCCC
Confidence             699999999 999999999987777778899999998889999999999 899999999985689999999997 6674


Q ss_pred             CCCCCCCeEEEEEEEeee--CCeeEEEEEcCCCCCCCCCcEEEEEecC---CeeeecCCcEEeeC
Q psy3960         292 NSPDGLDHAVLAVGYGEL--DGKPYWQVKNSWSTYWGNQGYVLMSIKD---NNCGVMTAPTYVTM  351 (351)
Q Consensus       292 ~~~~~~~HaV~iVGyg~~--~g~~ywivkNSWG~~WG~~GY~~Is~~~---n~cgi~~~~~~~~~  351 (351)
                      .   .++|||+|||||++  ++++|||||||||++||++|||||+|+.   |.|||+++++||+|
T Consensus       163 ~---~~~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p~~  224 (224)
T 3f75_A          163 T---DLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM  224 (224)
T ss_dssp             C---CCCEEEEEEEEEEETTTTEEEEEEECSBCTTSTBTTEEEEESCSCTTCGGGTTSSCEEEEC
T ss_pred             C---ccCeEEEEEEEecccCCCCCEEEEECCcCcchhhCCEEEEEcCCCCCCcCcccCceeeeeC
Confidence            3   68999999999998  8999999999999999999999999987   99999999999986

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=100.00  E-value=9.2e-60  Score=453.50  Aligned_cols=248  Identities=29%  Similarity=0.588  Sum_probs=207.9

Q ss_pred             ccccccceeecCeeccceeeccccCc--ccc--eeEEEEEccCCCCCCcCcceeecCC---CccccCCccCchhhhhhHH
Q psy3960          93 NWTYIGEELVNGIILEKWRLVTSEGE--KVS--KYSLWVRYNKASKDAIPVRYEMKGY---NSLLDQSVCGSCWSFGTTG  165 (351)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~plP~~~d~r~~---~~v~dQg~cGSCWAfA~~~  165 (351)
                      .|+ ++.+.|.|++.++|...+....  ...  ....  .........+|.+||+|..   .+|+|||.||||||||+++
T Consensus        62 ~~~-~g~N~FaDlt~eEf~~~~~g~~~~~~~~~~~~~--~~~~~~~~~lP~~~DwR~~g~vt~VkdQg~CGSCWAFaa~~  138 (322)
T 1pci_A           62 SYW-LGLNEFADLSNDEFNEKYVGSLIDATIEQSYDE--EFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVA  138 (322)
T ss_dssp             SEE-ECSCTTTTSCHHHHHHHHCCCBCCCSSCCCCSE--ECCCCCCCCSCSCEETTTTTCCCCCCBCTTSCCHHHHHHHH
T ss_pred             ceE-EecCccccCCHHHHHHHhcCCCCcccccccccc--ccccccccCCCCeEecccCCCCCCccccccCCccHHHHHHH
Confidence            344 4788899998888765432110  000  0000  0111122357878887753   4889999999999999999


Q ss_pred             HHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCCCCccccCCC-CceeeEee
Q psy3960         166 AVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANT-TATATMTG  244 (351)
Q Consensus       166 alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~PY~~~~~~C~~~~~-~~~~~i~~  244 (351)
                      +||+++++++|+.+.||+|+|+||+.  .+.||+||++..|++|+.++||++|++| ||.+.++.|+.... ...++|.+
T Consensus       139 alE~~~~i~~g~~~~lSeq~lvdC~~--~~~gC~GG~~~~a~~yi~~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~~i~~  215 (322)
T 1pci_A          139 TVEGINKIRTGKLVELSEQELVDCER--RSHGCKGGYPPYALEYVAKNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSG  215 (322)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHSCT--TSCGGGCBCHHHHHHHHHHHCBCBTTTS-CCCSSCCCCTTTTCCSCCBCCCC
T ss_pred             HHHHHHHHHcCCccccCHHHHHhhcC--CCCCCCCCCHHHHHHHHHHhCCCchhhC-CCCCCCCCCCCCCCCCceEEEee
Confidence            99999999999999999999999985  6889999999999999999999999999 99999999987643 45688999


Q ss_pred             EEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCC
Q psy3960         245 FVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTY  324 (351)
Q Consensus       245 y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~  324 (351)
                      |..|+..++++||++|++ |||+|+|++++++|++|++|||.. .|+.   .++|||+|||||+++|++|||||||||++
T Consensus       216 ~~~v~~~~e~~l~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-~c~~---~~~HaV~iVGyg~~~g~~yWivkNSWG~~  290 (322)
T 1pci_A          216 VGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEG-PCGT---KVDGAVTAVGYGKSGGKGYILIKNSWGTA  290 (322)
T ss_dssp             EEECCSSBHHHHHHHHHH-SCEEEEECTTCHHHHTEEEEEECC-SCCS---CCCEEEEEEEEEEETTEEEEEEECSBCSS
T ss_pred             EEEeCCCcHHHHHHHHHH-CCEEEEEecccccccccCCeEeCC-CCCC---CCCEEEEEEEEeccCCccEEEEEeCCCCc
Confidence            999988889999999998 999999999767999999999965 5754   47999999999999999999999999999


Q ss_pred             CCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         325 WGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       325 WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                      ||++|||||+|+.    |.|||+++++||++
T Consensus       291 WGe~GY~~i~r~~~~~~n~CgI~~~~~yp~~  321 (322)
T 1pci_A          291 WGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  321 (322)
T ss_dssp             STBTTEEEEECCCSBSSCGGGGGGCCEEECC
T ss_pred             ccCCeEEEEEcCCCCCCCcCCcccceeEEEe
Confidence            9999999999985    89999999999985

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=100.00  E-value=2.1e-59  Score=426.78  Aligned_cols=207  Identities=37%  Similarity=0.729  Sum_probs=186.7

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.  . .+|+||+.||||||||++++||+++++++++.++||+|+|+||..  .+.||+||++..|++|++++
T Consensus         1 lP~~~DwR~~~~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~i~~~   78 (214)
T 1m6d_A            1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDK--MDKACMGGLPSNAYSAIKNL   78 (214)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCS--SSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcCcCCCCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcC--CCCCCCCCCHHHHHHHHHHh
Confidence            456666664  3 488999999999999999999999999999999999999999984  46899999999999999987


Q ss_pred             -CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecC--CC
Q psy3960         214 -GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDE--KC  290 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~--~~  290 (351)
                       |+++|++| ||.+.++.|+.......+++.++..++. ++++||++|+++|||+++|++.  .|++|++|||..+  .|
T Consensus        79 ~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~~~~i~~-~~~~ik~~l~~~GPV~v~i~~~--~f~~Y~~Giy~~~~~~c  154 (214)
T 1m6d_A           79 GGLETEDDY-SYQGHMQSCQFSAEKAKVYIQDSVELSQ-NEQKLAAWLAKRGPISVAINAF--GMQFYRHGISRPLRPLC  154 (214)
T ss_dssp             TCBCBTTTS-CCCSSCCCCCCCGGGCCBCCSEEEECCS-CHHHHHHHHHHHCCEEEEECTH--HHHHCCSSEECCCGGGS
T ss_pred             cCcccccCc-CcCCCCCcCCCCcccceEEecCEEEeCh-HHHHHHHHHHhCCCEEEEEEec--hhhhcCCceecCCCCcC
Confidence             89999999 9999999998766666788999998865 8999999999999999999997  5999999999763  36


Q ss_pred             CCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEeeC
Q psy3960         291 NNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM  351 (351)
Q Consensus       291 ~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~~~  351 (351)
                      ...  .++|||+|||||+++|++|||||||||++||++|||||+|+.|.|||++.++||++
T Consensus       155 ~~~--~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~Cgi~~~~~~~~~  213 (214)
T 1m6d_A          155 SPW--LIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV  213 (214)
T ss_dssp             CTT--CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEEC
T ss_pred             CCC--cCCEEEEEEEEeecCCcEEEEEEeCCCCCcccCcEEEEEcCCCccccCceeEEEEe
Confidence            542  68999999999999999999999999999999999999999999999999999985

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=100.00  E-value=6.7e-59  Score=423.87  Aligned_cols=206  Identities=38%  Similarity=0.777  Sum_probs=186.6

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.  . .+|+||+.||||||||++++||+++++++++.++||+|+|+||+.  .+.||+||++..|++|++++
T Consensus         1 lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~~~~~   78 (215)
T 1iwd_A            1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDT--ASHGCNGGWMNNAFQYIITN   78 (215)
T ss_dssp             CCSCEEGGGGTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcEeCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHhcCCccccChhHeEECcC--CCCCCCCCCHHHHHHHHHHh
Confidence            466666664  3 488999999999999999999999999999999999999999985  37899999999999999998


Q ss_pred             -CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 -GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                       |+++|++| ||.+.++.|+... ...+++.+|..++..++++||++|++ |||+++|++..++|++|++|||.. .|..
T Consensus        79 ~Gi~~e~~y-PY~~~~~~C~~~~-~~~~~i~~~~~v~~~~~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-~c~~  154 (215)
T 1iwd_A           79 GGIDTQQNY-PYSAVQGSCKPYR-LRVVSINGFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTG-PCGT  154 (215)
T ss_dssp             TCBCBTTTS-CCCSSCCCCCTTC-CCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-CCCC
T ss_pred             CCccccccc-CccCCCCCCCCCC-CceEEeCcEEEeCCCcHHHHHHHHHh-CCEEEEEecCCcchhhcCCceECC-CCCC
Confidence             99999999 9999999998754 46789999999988889999999987 999999999844899999999975 5753


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||+++|++|||||||||++||++|||||+|+.    |.|||+++++||++
T Consensus       155 ---~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  214 (215)
T 1iwd_A          155 ---AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK  214 (215)
T ss_dssp             ---CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             ---cCCEEEEEEEEeccCCccEEEEEeCCCCCcCCCcEEEEEcCCCCCCCCCCccccceeeee
Confidence               579999999999999999999999999999999999999986    89999999999986

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=100.00  E-value=1.8e-59  Score=429.53  Aligned_cols=209  Identities=37%  Similarity=0.782  Sum_probs=183.9

Q ss_pred             cCcceeec--CC-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMK--GY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r--~~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|  ++ .+|+||+.||||||||++++||+++++++++.+.||+|+|+||+..  +.||+||++..|++|++++
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~~~~~~   78 (222)
T 3u8e_A            1 APASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTX--XXXXXGGDADDAFRWVITN   78 (222)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHSCCCCBCHHHHHHHCC--------CCCHHHHHHHHHHH
T ss_pred             CCCcCcCCcCCCCCCcccCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhccCc--ccccCCCCHHHHHHHHHHc
Confidence            45666666  44 4889999999999999999999999999999999999999999953  8899999999999999999


Q ss_pred             -CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccC-cEEecCCCC
Q psy3960         214 -GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVN-GVYYDEKCN  291 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~-Giy~~~~~~  291 (351)
                       |+++|++| ||.+.++.|+..... .+++.+|..++ .++++||++|. +|||+++|+++.++|++|++ |||..+.|.
T Consensus        79 ~Gi~~e~~y-PY~~~~~~C~~~~~~-~~~i~~~~~v~-~~~~~i~~~l~-~GPV~v~i~~~~~~f~~Y~~~Giy~~~~~~  154 (222)
T 3u8e_A           79 GGIASDANY-PYTGVDGTCDLNKPI-AARIDGYTNVP-NSSSALLDAVA-KQPVSVNIYTSSTSFQLYTGPGIFAGSSCS  154 (222)
T ss_dssp             TCBCBTTTS-CCCSSCCCCCCCSCC-CBCCCEEEECC-SCHHHHHHHHH-HSCEEEEECCCSHHHHTCCCSSCBCCTTCC
T ss_pred             CCccchhcC-CCcccCCccccCCCC-eEEEccEEEeC-CcHHHHHHHHh-CCCEEEEEEecChhhhcEeCCceECCCccc
Confidence             99999999 999999999876555 78999999997 78999999995 59999999998569999999 999887786


Q ss_pred             CCCCCCCeEEEEEEEeeeC-CeeEEEEEcCCCCCCCCCcEEEEEecCC----eeeecCCcEEeeC
Q psy3960         292 NSPDGLDHAVLAVGYGELD-GKPYWQVKNSWSTYWGNQGYVLMSIKDN----NCGVMTAPTYVTM  351 (351)
Q Consensus       292 ~~~~~~~HaV~iVGyg~~~-g~~ywivkNSWG~~WG~~GY~~Is~~~n----~cgi~~~~~~~~~  351 (351)
                      .....++|||+|||||+++ +++|||||||||++||++|||||+|+.|    .|||+++++||++
T Consensus       155 ~~~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~~~p~~  219 (222)
T 3u8e_A          155 DDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTK  219 (222)
T ss_dssp             CCGGGCCEEEEEEEEEESSTTCEEEEEECSBCTTSTBTTEEEEECSCSCTTCGGGTTSSCEEEEC
T ss_pred             CCCCcCCEEEEEEEEeecCCCCcEEEEECCCCCCcccCCEEEEEcCCCCCCCcCCccccceEEEE
Confidence            5334679999999999987 8999999999999999999999999887    8999999999985

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=100.00  E-value=5.3e-59  Score=425.36  Aligned_cols=207  Identities=36%  Similarity=0.710  Sum_probs=187.9

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.  . .+|+||+.||||||||++++||+++++++++.++||+|+|+||+  ..+.||+||++..|++|++++
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~--~~~~gC~GG~~~~a~~~~~~~   78 (218)
T 1yal_A            1 YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCD--KHSYGCKGGYQTTSLQYVANN   78 (218)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHC--TTSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcCcCCCCCCCCCCccCccchhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhc--CCCCCCCCCCHHHHHHHHHHc
Confidence            466777775  3 48899999999999999999999999999999999999999998  367899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccccCCC-CceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 GLPTQDDYGPYLGQDAYCHIANT-TATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 Gi~~e~~y~PY~~~~~~C~~~~~-~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      |+++|++| ||.+.++.|+.... ...+++.+|..++..++++||++|++ |||+++|++++++|++|++|||.. +|..
T Consensus        79 Gi~~e~~y-PY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~-~~~~  155 (218)
T 1yal_A           79 GVHTSKVY-PYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDG-PCGT  155 (218)
T ss_dssp             CBCBTTTS-CCCSSCCCCCGGGCCSCCBCCSEEEECCSSBHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECC-SCCS
T ss_pred             CCCccccc-cccCCCCCcccCcCCCceEEEeeEEEeCCCCHHHHHHHHHh-CCEEEEEeccchhccccCCceECC-CCCC
Confidence            99999999 99999999987643 46789999999988889999999987 999999999767999999999975 5754


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||+++|++|||||||||++||++|||||+|+.    |.|||+++++||++
T Consensus       156 ---~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (218)
T 1yal_A          156 ---KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK  215 (218)
T ss_dssp             ---CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEEC
T ss_pred             ---CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEECCCCCCCCccccccceeeEEE
Confidence               479999999999999999999999999999999999999974    89999999999985

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=100.00  E-value=5.9e-59  Score=432.42  Aligned_cols=209  Identities=35%  Similarity=0.737  Sum_probs=190.6

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.  + .+|+||+.||||||||++++||+++++++++.+.||+|+|+||+.  .+.||+||++..|++|++++
T Consensus         2 lP~~~DwR~~g~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g~~~~LS~q~lvdC~~--~~~gC~GG~~~~a~~y~~~~   79 (246)
T 2b1m_A            2 APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVD--ESEGCYNGWHYQSFEWVVKH   79 (246)
T ss_dssp             CCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSBTTTBCCHHHHHHHHHHT
T ss_pred             CCCcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhcC--CCCCCCCCCHHHHHHHHHHh
Confidence            577777775  3 488999999999999999999999999999999999999999985  67899999999999999998


Q ss_pred             -CCCCCCCCCCCCCCCCccccCCCCceeeEeeE---EEecCCCHHHHHHHHHc---CCCEEEEEEcCccccccccCcEEe
Q psy3960         214 -GLPTQDDYGPYLGQDAYCHIANTTATATMTGF---VNVTPNSEDALKLALAK---HGPVSVAIDASQKSFSFYVNGVYY  286 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y---~~v~~~~~~~ik~aL~~---~GPV~v~i~~~~~~f~~y~~Giy~  286 (351)
                       |+++|++| ||.+.++.|+.......+++++|   ..++..++++||++|++   +|||+++|++  ++|++|++|||.
T Consensus        80 ~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~i~~y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~--~~f~~Y~~Giy~  156 (246)
T 2b1m_A           80 GGIASEADY-PYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYD  156 (246)
T ss_dssp             TCBCBTTTS-CCCSSCCCCCGGGCCCCBCCSEEEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECC--TTGGGCCSSEEC
T ss_pred             CCcCccccc-cccCCCCcCcCCCCCCceeEcCcceeeecCCChHHHHHHHHHhhccCCCEEEEEEc--chhhcccceeec
Confidence             99999999 99999999987666667899999   88877789999999999   6999999999  589999999998


Q ss_pred             cCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         287 DEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       287 ~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                      .+.|+... .++|||+|||||+++|++|||||||||++||++|||||+|+.    |.|||++.++||++
T Consensus       157 ~~~c~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p~~  224 (246)
T 2b1m_A          157 GGNCSSPY-GINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPII  224 (246)
T ss_dssp             CTTCCSSC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEEEC
T ss_pred             CCCCCCCC-cCceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCCCCccccccceeeEEEe
Confidence            87786531 379999999999999999999999999999999999999987    89999999999985

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=100.00  E-value=4.6e-59  Score=446.52  Aligned_cols=208  Identities=26%  Similarity=0.549  Sum_probs=191.7

Q ss_pred             CcCcceeecCC---CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHH
Q psy3960         136 AIPVRYEMKGY---NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMK  212 (351)
Q Consensus       136 plP~~~d~r~~---~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~  212 (351)
                      .+|.+||||..   .+|+|||.||||||||++++||+++++++|+.+.||+|+|+||+   ...||+||++..|++|+.+
T Consensus        89 ~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~---~~~GC~GG~~~~a~~yi~~  165 (312)
T 1xkg_A           89 NAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA---SQHGCHGDTIPRGIEYIQH  165 (312)
T ss_dssp             CCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHT---CSSTTBCCCHHHHHHHHHH
T ss_pred             cCCCccccccCCCcCCccccCCCCccHHHHHHHHHHHHHHHHhCCCCCcCHHHHHhcc---CCCCCCCCCHHHHHHHHHH
Confidence            57777777754   48899999999999999999999999999999999999999998   1289999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHc-CCCEEEEEEcCcc-ccccccCcEEecCCC
Q psy3960         213 HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAK-HGPVSVAIDASQK-SFSFYVNGVYYDEKC  290 (351)
Q Consensus       213 ~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~-~GPV~v~i~~~~~-~f~~y~~Giy~~~~~  290 (351)
                      .||++|++| ||.+.++.|+ ......++|++|..|+..++++||++|++ +|||+|+|+++.. +|++|++|||..+.|
T Consensus       166 ~Gi~~e~~y-PY~~~~~~C~-~~~~~~~~i~~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~GVy~~~~c  243 (312)
T 1xkg_A          166 NGVVQESYY-RYVAREQSCR-RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDN  243 (312)
T ss_dssp             HCEEBGGGS-CCCSSCCCCC-CCSSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCC
T ss_pred             cCCCccccC-CccCCCCCCC-CCCCceEEEeeEEEeCCCCHHHHHHHHHhcCCCEEEEEEecccccccccCCcEEcCCCC
Confidence            999999999 9999999999 55556799999999987899999999999 9999999999843 899999999998888


Q ss_pred             C-CCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEeeC
Q psy3960         291 N-NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM  351 (351)
Q Consensus       291 ~-~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~~~  351 (351)
                      . ..  . +|||+|||||+++|++|||||||||++||++|||||+|+.|.|||++.++||++
T Consensus       244 ~~~~--~-~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~n~CgI~~~~~~~~~  302 (312)
T 1xkg_A          244 GYQP--N-YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL  302 (312)
T ss_dssp             SSCC--E-EEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEEC
T ss_pred             CCCc--C-ceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCcccccceeEEeec
Confidence            6 32  5 999999999999999999999999999999999999999999999999999975

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=100.00  E-value=1e-58  Score=422.60  Aligned_cols=205  Identities=37%  Similarity=0.762  Sum_probs=182.3

Q ss_pred             cCcceeec--CC-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMK--GY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r--~~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|  ++ .+|+||+.||||||||++++||+++++++++.++||+|+|+||+.  .+.||+||++..|++|++++
T Consensus         1 lP~~~Dwr~~g~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~y~~~~   78 (215)
T 3i06_A            1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDK--TDSGCSGGLMNNAFEWIVQE   78 (215)
T ss_dssp             CCSEEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHCS--SSCGGGCCCHHHHHHHHHHH
T ss_pred             CCCcccCCcCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHhccCC--CCCCCCCCCHHHHHHHHHHh
Confidence            35555655  44 488999999999999999999999999999999999999999984  57899999999999999986


Q ss_pred             ---CCCCCCCCCCCCCCCC---ccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEec
Q psy3960         214 ---GLPTQDDYGPYLGQDA---YCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYD  287 (351)
Q Consensus       214 ---Gi~~e~~y~PY~~~~~---~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~  287 (351)
                         |+++|++| ||.+.++   .|+.......+++++|..++. ++++||++|+++|||+++|++.  +|++|++|||..
T Consensus        79 ~~gGi~~e~~y-PY~~~~~~~~~C~~~~~~~~~~i~~~~~v~~-~~~~ik~~l~~~gPV~v~~~~~--~f~~Y~~Giy~~  154 (215)
T 3i06_A           79 NNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTS  154 (215)
T ss_dssp             STTEEEC-CCS-CCCCTTSCCCCCCCSSCCEEEEEEEEEECCS-CHHHHHHHHHHHCCEEEEECCT--TGGGCCSSEECS
T ss_pred             ccccccccCcc-CCcCCCCCCCccccCCcccceEecceEEeCC-hHHHHHHHHHHCCCEEEEEEch--HHhcCCCCcccC
Confidence               69999999 9997654   688766667789999999965 8999999999999999999984  899999999963


Q ss_pred             CCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEeeC
Q psy3960         288 EKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM  351 (351)
Q Consensus       288 ~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~~~  351 (351)
                        |...  .++|||+|||||++++++|||||||||++||++|||||+|+.|+|||+++++||+|
T Consensus       155 --~~~~--~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgi~~~~~~~~~  214 (215)
T 3i06_A          155 --CVSE--QLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             --CCCS--CCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSEEEEEE
T ss_pred             --CCCC--ccCcEEEEEEEeccCCcEEEEEECCCCCCcccCceEEEecCCCeecCCCceeEEec
Confidence              5332  57999999999999999999999999999999999999999999999999999975

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=100.00  E-value=3.8e-58  Score=418.01  Aligned_cols=203  Identities=35%  Similarity=0.716  Sum_probs=184.5

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.  . .+|+||+.||||||||++++||+++++++++.++||+|+|+||+.  .+.||+||++..|++|++++
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~yi~~~   78 (212)
T 2cio_A            1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR--RSYGCNGGYPWSALQLVAQY   78 (212)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHT
T ss_pred             CCCcccCCCCCCCCCCccCCccchHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhCC--CCCCCCCCCHHHHHHHHHHh
Confidence            466777775  3 488999999999999999999999999999999999999999985  57899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccccCC-CCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 GLPTQDDYGPYLGQDAYCHIAN-TTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 Gi~~e~~y~PY~~~~~~C~~~~-~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      |+++|++| ||.+.++.|+... ....+++++|..++..++++||++|++ |||+++|+++.++|++|++|||.. +|..
T Consensus        79 Gi~~e~~y-PY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-~~~~  155 (212)
T 2cio_A           79 GIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVG-PCGN  155 (212)
T ss_dssp             CBCBTTTS-CCCSSCCCCCTTTTCSCSBCCSEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-CCCS
T ss_pred             CcCccccc-CCcCCCCCcCCCCCCCceEEEeeEEEeCCccHHHHHHHHHh-CCEEEEEeccCcchhhcCCceecC-CCCC
Confidence            99999999 9999999998765 356789999999988889999999987 999999999855899999999975 5754


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||+    +|||||||||++||++|||||+|+.    |.|||+++++||++
T Consensus       156 ---~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (212)
T 2cio_A          156 ---KVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  211 (212)
T ss_dssp             ---CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECSSSCTTCGGGTTSCCEEEEC
T ss_pred             ---CCCEEEEEEEecC----CeEEEEeCCCCCcccCcEEEEEcCCCCCCCccCcccceeEEEe
Confidence               4799999999997    8999999999999999999999986    89999999999986

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=100.00  E-value=5.2e-58  Score=456.66  Aligned_cols=280  Identities=24%  Similarity=0.447  Sum_probs=185.8

Q ss_pred             CCCCceeceeeeeccCcc--ccchhhhhcccccccceeecCeeccceeeccccCccc--ceeEEEEEcc-CCCCCCcCcc
Q psy3960          66 DVSDFKVNIYRLFFLRPR--FHENEKIRYNWTYIGEELVNGIILEKWRLVTSEGEKV--SKYSLWVRYN-KASKDAIPVR  140 (351)
Q Consensus        66 ~~~~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~plP~~  140 (351)
                      .+..+++..+|--|..+.  ..++|.....|+...++.|.|++.++++..+......  ......+... .....++|.+
T Consensus       131 ~~~~~~~~~R~~if~~N~~~I~~~N~~~~~~~~~~~n~faDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s  210 (441)
T 3pdf_A          131 HLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILFLPTS  210 (441)
T ss_dssp             ---------------------------------------------------------------------------CCCSC
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHccCCceEeecccccccCCHHHHHHHhCCCcccccccccCccccccccccccCCCC
Confidence            333344444444454443  5566665667887668999999999988665321100  0000001100 1123457888


Q ss_pred             eeecC------CCccccCCccCchhhhhhHHHHHHHHHHhcCCce--ecCHHHHhhhcCCCCCCCCCCCchHHH-HHHHH
Q psy3960         141 YEMKG------YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLA--VLSQQALIDCSWGYGNNGCDGGEDFRS-YQWIM  211 (351)
Q Consensus       141 ~d~r~------~~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~--~LS~q~l~dc~~~~~~~gC~GG~~~~a-~~~l~  211 (351)
                      ||||.      ..+|+|||.||||||||++++||++++++++..+  .||+|+|+||+.  .+.||+||++..| ++|++
T Consensus       211 ~DwR~~~g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~--~~~GC~GG~~~~aa~~yi~  288 (441)
T 3pdf_A          211 WDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ--YAQGCEGGFPYLIAGKYAQ  288 (441)
T ss_dssp             EETTCBTTBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHTTHHHH
T ss_pred             EECCcCCCCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhcc--CCCCCCCCchhHHHHHHHH
Confidence            88885      3489999999999999999999999999998654  599999999985  4889999999987 89999


Q ss_pred             HcCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEec----CCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEec
Q psy3960         212 KHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVT----PNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYD  287 (351)
Q Consensus       212 ~~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~----~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~  287 (351)
                      ++||++|++| ||.+.++.|+.......+++.+|..+.    ..++++||++|+++|||+|+|+++ ++|++|++|||..
T Consensus       289 ~~Gi~tE~~y-PY~~~~~~C~~~~~~~~~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~-~~F~~Y~sGVy~~  366 (441)
T 3pdf_A          289 DFGLVEEACF-PYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVY-DDFLHYKKGIYHH  366 (441)
T ss_dssp             HTCBCBGGGS-CCCSSCCCSCCCSSCCCBCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCC-GGGGGCCSSEECC
T ss_pred             hcCCCcHHHe-eecccCCCCCCccccceeeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEec-ccccccCCceEec
Confidence            9999999999 999999999987666678889998886    357999999999999999999998 8999999999987


Q ss_pred             CCCCC---CCCCCCeEEEEEEEeee--CCeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEe
Q psy3960         288 EKCNN---SPDGLDHAVLAVGYGEL--DGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV  349 (351)
Q Consensus       288 ~~~~~---~~~~~~HaV~iVGyg~~--~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~  349 (351)
                      +.|..   ....++|||+|||||++  +|++|||||||||++||++|||||+|+.|+|||++.++++
T Consensus       367 ~~~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a~  433 (441)
T 3pdf_A          367 TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA  433 (441)
T ss_dssp             C---CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEEE
T ss_pred             CCCCcccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEEe
Confidence            76532   11358999999999985  6899999999999999999999999999999999999865

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=100.00  E-value=8.2e-58  Score=414.71  Aligned_cols=201  Identities=37%  Similarity=0.750  Sum_probs=182.0

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.  + .+|+||+.||||||||++++||+++++++++.++||+|+|+||+.  .+.||+||++..|++|+.++
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~y~~~~   78 (208)
T 1o0e_A            1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK--KNHGCLGGAFVFAYQYIINN   78 (208)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcCcCCCCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCceecCHHHhhhhcC--CCCCCCCCCHHHHHHHHHHh
Confidence            356666664  4 488999999999999999999999999999999999999999984  57899999999999999998


Q ss_pred             -CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 -GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                       |+++|++| ||.+.++.|+.  ....+++++|..++..++++||++|++ |||+++|+++.++|++|++|||.. +|..
T Consensus        79 ~Gi~~e~~y-PY~~~~~~C~~--~~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-~c~~  153 (208)
T 1o0e_A           79 GGIDTQANY-PYKAVQGPCQA--ASKVVSIDGYNGVPFCNEXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFSG-PCGT  153 (208)
T ss_dssp             TCBCBTTTS-CCCSSCCCCCC--CCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-CCCS
T ss_pred             CCcCccccc-CccCCCCcCCC--CCceEEeCeEEEeCCCCHHHHHHHHHh-CCEEEEEEccCcccccccCceECC-CCCC
Confidence             99999999 99999999986  445688999999988889999999997 999999999855899999999975 5754


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC--CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD--NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~--n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||+    +|||||||||++||++|||||+|+.  |.|||+++++||++
T Consensus       154 ---~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~Cgi~~~~~~p~~  207 (208)
T 1o0e_A          154 ---KLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPTK  207 (208)
T ss_dssp             ---CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEEC
T ss_pred             ---cCCEEEEEEEeCC----CeEEEEcCCCCcccCCcEEEEEcCCCCCcCCCcccceeeec
Confidence               4799999999997    8999999999999999999999986  89999999999985

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=100.00  E-value=7.7e-58  Score=416.59  Aligned_cols=203  Identities=35%  Similarity=0.728  Sum_probs=184.6

Q ss_pred             cCcceeecCC---CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKGY---NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~~---~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|..   .+|+||+.||||||||++++||+++++++++.++||+|+|+||+.  .+.||+||++..|++|++++
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~y~~~~   78 (214)
T 2bdz_A            1 YPESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCER--RSHGCDGGYQTTSLQYVVDN   78 (214)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCBCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcEeCCCCCCCCCCccCCCCccHHHHHhHHHHHHHHHHhcCCccccCHHHHHhhcC--CCCCCCCCCHHHHHHHHHHh
Confidence            4666666653   488999999999999999999999999999999999999999985  57899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccccCCC-CceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 GLPTQDDYGPYLGQDAYCHIANT-TATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 Gi~~e~~y~PY~~~~~~C~~~~~-~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      |+++|++| ||.+.++.|+.... ...+++++|..++..++++||++|++ |||+++|++..++|++|++|||.. +|..
T Consensus        79 Gi~~e~~y-PY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~~-~~~~  155 (214)
T 2bdz_A           79 GVHTEREY-PYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEG-PCGT  155 (214)
T ss_dssp             CEEBTTTS-CCCSSCCCCCTTTCCSCEECCCEEEEECSSBHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-SCCS
T ss_pred             CCCccccC-CCCCCCCCCCCCCCCCceeeecCEEEeCCCcHHHHHHHHHh-CCEEEEEeeChhHhhcccCceecC-CCCC
Confidence            99999999 99999999987655 46789999999988889999999998 999999999866899999999976 4653


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||+    +|||||||||++||++|||||+|+.    |.|||+++++||++
T Consensus       156 ---~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (214)
T 2bdz_A          156 ---NTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK  211 (214)
T ss_dssp             ---CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCCSBSSCGGGTTSCEEEEEC
T ss_pred             ---CCCeEEEEEEcCC----CeEEEEeCCCCCcccCCEEEEEcCCCCCCCcccccccceEEEe
Confidence               5899999999997    8999999999999999999999985    88999999999985

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=100.00  E-value=7.5e-58  Score=423.80  Aligned_cols=205  Identities=32%  Similarity=0.706  Sum_probs=187.7

Q ss_pred             CcCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHH
Q psy3960         136 AIPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMK  212 (351)
Q Consensus       136 plP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~  212 (351)
                      .+|.+||+|.  . .+|+||+.||||||||++++||+++++++++.++||+|+|++|+.  .+.||+||++..|++|+.+
T Consensus        17 ~lP~~~DwR~~~~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~~~~~lSeq~l~dC~~--~~~gC~GG~~~~a~~yi~~   94 (241)
T 2oul_A           17 FDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSF--KNYGCNGGLINNAFEDMIE   94 (241)
T ss_dssp             CCSSCEEGGGTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHCT--TSCTTBCBCHHHHHHHHHH
T ss_pred             cCCCccccCcCCCCCCCccCccchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhhcC--CCCCCCCCCHHHHHHHHHH
Confidence            4777788775  3 488999999999999999999999999999999999999999985  3789999999999999998


Q ss_pred             -cCCCCCCCCCCCCCCCCc-cccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCC
Q psy3960         213 -HGLPTQDDYGPYLGQDAY-CHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKC  290 (351)
Q Consensus       213 -~Gi~~e~~y~PY~~~~~~-C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~  290 (351)
                       .|+++|++| ||.+.++. |+.......+++++|..++..++++||++|   |||+++|++. ++|++|++|||.. .|
T Consensus        95 ~~Gi~~e~~y-PY~~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l---GPV~v~i~~~-~~f~~Y~~Giy~~-~c  168 (241)
T 2oul_A           95 LGGICPDGDY-PYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRFL---GPISISVAVS-DDFAFYKEGIFDG-EC  168 (241)
T ss_dssp             TTSBCBTTSS-CCCTTSCCCCCTTSSSCCBCCSEEEECCTTCHHHHHHHT---CCEEEEECBC-HHHHTCCSSBCCS-CB
T ss_pred             hCCcCccccC-CCcCCCCCcCCCCCCccceeeeeEEEeCCCCHHHHHHhh---CCEEEEEecC-cchhhcCCcEEcC-cC
Confidence             599999999 99999888 998766778999999999888899999999   9999999997 7999999999976 67


Q ss_pred             CCCCCCCCeEEEEEEEeeeC----------CeeEEEEEcCCCCCCCCCcEEEEEecCCe----eeecCCcEEeeC
Q psy3960         291 NNSPDGLDHAVLAVGYGELD----------GKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM  351 (351)
Q Consensus       291 ~~~~~~~~HaV~iVGyg~~~----------g~~ywivkNSWG~~WG~~GY~~Is~~~n~----cgi~~~~~~~~~  351 (351)
                      +.   .++|||+|||||+++          |++|||||||||++||++|||||+|+.|+    |||+++++||++
T Consensus       169 ~~---~~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~  240 (241)
T 2oul_A          169 GD---QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI  240 (241)
T ss_dssp             CS---SCCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEEEC
T ss_pred             CC---CCCEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEEEee
Confidence            54   289999999999885          78999999999999999999999999887    999999999986

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=100.00  E-value=8.6e-58  Score=420.34  Aligned_cols=208  Identities=40%  Similarity=0.777  Sum_probs=187.3

Q ss_pred             cCcceeecCC---CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKGY---NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~~---~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|..   .+|+||+.||||||||++++||+++++++++.+.||+|+|+||+.. .+.||+||++..||+|+.++
T Consensus         2 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~-~~~gC~GG~~~~a~~y~~~~   80 (229)
T 1s4v_A            2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD-QNQGCNGGLMDYAFEFIKQR   80 (229)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCS-SCCTTBCBCHHHHHHHHHHH
T ss_pred             CCCCEeCCCCCCCCCCccCccchHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhCCC-CCCCCCCCCHHHHHHHHHHh
Confidence            6777777753   4889999999999999999999999999999999999999999853 57899999999999999998


Q ss_pred             -CCCCCCCCCCCCCCCCccccCC-CCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCC
Q psy3960         214 -GLPTQDDYGPYLGQDAYCHIAN-TTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN  291 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~~~~-~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~  291 (351)
                       |+++|++| ||.+.++.|+... ....+++++|..++..++++||++|++ |||+++|++..++|++|++|||.. .|.
T Consensus        81 ~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~-~c~  157 (229)
T 1s4v_A           81 GGITTEANY-PYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTG-SCG  157 (229)
T ss_dssp             TCBCBTTTS-CCCSSCCCCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-CCC
T ss_pred             CCccccccC-CccCCCCCCCCCCCCCcEEEeeeEEEeCCccHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcEECC-CCC
Confidence             99999999 9999999998642 345688999999988889999999998 999999999557999999999965 575


Q ss_pred             CCCCCCCeEEEEEEEeeeC-CeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         292 NSPDGLDHAVLAVGYGELD-GKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       292 ~~~~~~~HaV~iVGyg~~~-g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                      .   .++|||+|||||+++ |++|||||||||++||++|||||+|+.    |.|||+++++||++
T Consensus       158 ~---~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  219 (229)
T 1s4v_A          158 T---ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK  219 (229)
T ss_dssp             C---CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             C---CCCeEEEEEEeccccCCCCEEEEEeCCCCCccCCcEEEEEcCCCCCCCcCcccccceeeEe
Confidence            4   479999999999986 899999999999999999999999984    89999999999985

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=100.00  E-value=8.5e-58  Score=423.93  Aligned_cols=206  Identities=34%  Similarity=0.700  Sum_probs=188.0

Q ss_pred             CCcCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHH
Q psy3960         135 DAIPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM  211 (351)
Q Consensus       135 ~plP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~  211 (351)
                      ..+|.+||+|.  . .+|+||+.||||||||++++||+++++++++.++||+|+|++|+.  .+.||+||++..|++|+.
T Consensus        18 ~~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~~~~~lSeq~lvdC~~--~~~gC~GG~~~~a~~y~~   95 (243)
T 3bwk_A           18 KLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSV--KNNGCYGGYITNAFDDMI   95 (243)
T ss_dssp             CCCCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCSCCCBCHHHHHHHCT--TSCGGGCCCHHHHHHHHH
T ss_pred             ccCCCceecCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcC--CCCCCCCCCHHHHHHHHH
Confidence            34788888875  3 488999999999999999999999999999999999999999985  378999999999999999


Q ss_pred             H-cCCCCCCCCCCCCCCCCc-cccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCC
Q psy3960         212 K-HGLPTQDDYGPYLGQDAY-CHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEK  289 (351)
Q Consensus       212 ~-~Gi~~e~~y~PY~~~~~~-C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~  289 (351)
                      + .|+++|++| ||.+.++. |+.......+++++|..++..++++||++|   |||+++|++. ++|++|++|||.. .
T Consensus        96 ~~~Gi~~e~~y-PY~~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l---GPV~v~i~~~-~~f~~Y~~Giy~~-~  169 (243)
T 3bwk_A           96 DLGGLCSQDDY-PYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKEALRYL---GPISISIAAS-DDFAFYRGGFYDG-E  169 (243)
T ss_dssp             HTTSBCBTTTS-CCCTTSCCCCCGGGCSSCBCCCEEEECCTTCHHHHHHHT---CCEEEEECCC-HHHHTCCSSSCCC-C
T ss_pred             HhCCccccccc-CCcCCCCCcCCCCCCccceeeeeEEEeCCCCHHHHHHhh---CCEEEEEecC-hhHHhcCCceecC-C
Confidence            8 599999999 99998888 987666677899999999888999999999   9999999997 8999999999977 6


Q ss_pred             CCCCCCCCCeEEEEEEEeeeC----------CeeEEEEEcCCCCCCCCCcEEEEEecCCe----eeecCCcEEeeC
Q psy3960         290 CNNSPDGLDHAVLAVGYGELD----------GKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM  351 (351)
Q Consensus       290 ~~~~~~~~~HaV~iVGyg~~~----------g~~ywivkNSWG~~WG~~GY~~Is~~~n~----cgi~~~~~~~~~  351 (351)
                      |..   .++|||+|||||+++          |++|||||||||++||++|||||+|+.|+    |||+++++||++
T Consensus       170 c~~---~~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~  242 (243)
T 3bwk_A          170 CGA---APNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLL  242 (243)
T ss_dssp             CCS---SCCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEEEC
T ss_pred             CCC---cCCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEEec
Confidence            754   289999999999885          78999999999999999999999998887    999999999986

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=100.00  E-value=1e-57  Score=427.37  Aligned_cols=208  Identities=40%  Similarity=0.789  Sum_probs=187.8

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.  . .+|+|||.||||||||++++||+++++++++.+.||+|+|+||+.. .+.||+||++..||+|++++
T Consensus         4 lP~~~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~lvdC~~~-~~~GC~GG~~~~a~~yi~~~   82 (262)
T 2fo5_A            4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA-DNDGCQGGLMDNAFEYIKNN   82 (262)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCS-SCCGGGCBCHHHHHHHHHHT
T ss_pred             CCCcccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhcCC-CCCCCCCCCHHHHHHHHHHc
Confidence            677777775  3 4889999999999999999999999999999999999999999853 57899999999999999998


Q ss_pred             -CCCCCCCCCCCCCCCCccccCC---CCc-eeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecC
Q psy3960         214 -GLPTQDDYGPYLGQDAYCHIAN---TTA-TATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDE  288 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~~~~---~~~-~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~  288 (351)
                       |+++|++| ||.+.++.|+...   ... .++|.+|..++..++++||++|++ |||+++|+++.++|++|++|||.. 
T Consensus        83 ~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~~~~~i~~y~~v~~~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sGVy~~-  159 (262)
T 2fo5_A           83 GGLITEAAY-PYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFTG-  159 (262)
T ss_dssp             TCEEBTTTS-CCCSSCCCCCHHHHHHHCCCEECCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-
T ss_pred             CCcCchhcC-CCcCccCccCCcccccCCceeEEeceEEEcCCchHHHHHHHHHh-CCEEEEEecChHHHhccCCceECC-
Confidence             99999999 9999999998654   345 789999999987889999999998 899999999767899999999965 


Q ss_pred             CCCCCCCCCCeEEEEEEEeee-CCeeEEEEEcCCCCCCCCCcEEEEEecCC----eeeecCCcEEeeC
Q psy3960         289 KCNNSPDGLDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIKDN----NCGVMTAPTYVTM  351 (351)
Q Consensus       289 ~~~~~~~~~~HaV~iVGyg~~-~g~~ywivkNSWG~~WG~~GY~~Is~~~n----~cgi~~~~~~~~~  351 (351)
                      .|..   .++|||+|||||++ +|++|||||||||++||++|||||+|+.|    .|||++.++||++
T Consensus       160 ~c~~---~~~HaV~IVGyg~~~~G~~YWivkNSWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~~~p~~  224 (262)
T 2fo5_A          160 ECGT---ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVK  224 (262)
T ss_dssp             CCCC---CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEESSCSCTTCGGGTTTSCEEEEC
T ss_pred             CCCC---cCCEEEEEEEEcccCCCceEEEEEeCCCCCCCCCeEEEEEcCCCCCCCccceeeeeeEEEe
Confidence            5754   47999999999998 58999999999999999999999999864    4999999999985

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=100.00  E-value=1.8e-57  Score=413.82  Aligned_cols=203  Identities=33%  Similarity=0.685  Sum_probs=179.9

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      +|.+||+|.  + .+|+||+.||||||||++++||+++++++++.++||+|+|+||+.  .+.||+||++..|++|++++
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~~~~~   78 (213)
T 3ioq_A            1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCER--RSYGCRGGFPLYALQYVANS   78 (213)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCcccCHHHhhhhcC--CCCCCCCCCHHHHHHHHHHc
Confidence            355566654  3 488999999999999999999999999999999999999999995  57899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccccCC-CCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 GLPTQDDYGPYLGQDAYCHIAN-TTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 Gi~~e~~y~PY~~~~~~C~~~~-~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      |+++|++| ||.+.++.|+... ....+++.+|..++..+++.++.+| .+|||+++|+++.++|++|++|||.. .|..
T Consensus        79 Gi~~e~~y-PY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~~~~~~-~~GPV~v~i~~~~~~f~~y~~Giy~~-~~~~  155 (213)
T 3ioq_A           79 GIHLRQYY-PYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRI-AIQPVSIVVEAKGRAFQNYRGGIFAG-PCGT  155 (213)
T ss_dssp             CEEBGGGS-CCCSSCCCCCGGGCCSCEECCCEEEECCSSCHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEECC-SCCS
T ss_pred             CCCchhcc-CcCCCCCCCCCCccCCceEEeccEEEeCCchHHHHHHHH-HhCCEEEEEEechhhhhhccCCeEcC-CCCC
Confidence            99999999 9999999998643 4677899999999876766666655 55999999999867999999999977 5543


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||+    +|||||||||++||++|||||+|+.    |.|||+++++||++
T Consensus       156 ---~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  211 (213)
T 3ioq_A          156 ---SIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK  211 (213)
T ss_dssp             ---CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEESSCSSTTCGGGTTSCCEEEEC
T ss_pred             ---ccCceEEEEecCC----CeEEEECCCCCCcccCCeEEEEcCCCCCCCcccccCcceEeEe
Confidence               5799999999996    8999999999999999999999976    89999999999986

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=100.00  E-value=1.6e-57  Score=438.25  Aligned_cols=247  Identities=25%  Similarity=0.481  Sum_probs=179.4

Q ss_pred             ccccccce-eecCeeccceeeccccCcccce----eEEEEEccCCCCCCcCcceeecC------C-CccccCCccCchhh
Q psy3960          93 NWTYIGEE-LVNGIILEKWRLVTSEGEKVSK----YSLWVRYNKASKDAIPVRYEMKG------Y-NSLLDQSVCGSCWS  160 (351)
Q Consensus        93 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~plP~~~d~r~------~-~~v~dQg~cGSCWA  160 (351)
                      .|+. +.+ .|.|++.++|+...........    ....+... ....++|.+||+|.      . .+|+|||.||||||
T Consensus        25 ~~~~-~~n~~f~dlt~eE~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~lP~s~DwR~~w~~~g~vtpVkdQg~CGSCWA  102 (325)
T 3hhi_A           25 IWKA-KYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEE-EARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWA  102 (325)
T ss_dssp             --------------------------------CCSCBCCCCHH-HHHCCCCSCEEHHHHSTTCTTTTCCCBCCSSBCHHH
T ss_pred             ceEE-ecccccccCCHHHHHHHhCCCCCCcccccccCcccccc-ccccCCCCcEehhHhcCCCCccccccCCCCccccHH
Confidence            4554 444 7899998888754321110000    00000000 00235788888773      2 48899999999999


Q ss_pred             hhhHHHHHHHHHHhcCC-ceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCCCCC-CC----------C
Q psy3960         161 FGTTGAVEGAYYMKHKK-LAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYL-GQ----------D  228 (351)
Q Consensus       161 fA~~~alE~~~~~~~g~-~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~PY~-~~----------~  228 (351)
                      ||++++||++++++++. .+.||+|+|+||+.. .+.||+||++..|++|++++|+++|++| ||. +.          .
T Consensus       103 Fsa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~~-~~~GC~GG~~~~A~~yi~~~Gi~~e~~y-PY~~~~c~~~~~~~~~~  180 (325)
T 3hhi_A          103 VAAASAMSDRFCTMGGVQDVHISAGDLLACCSD-CGDGCNGGDPDRAWAYFSSTGLVSDYCQ-PYPFPHCSHHSKSKNGY  180 (325)
T ss_dssp             HHHHHHHHHHHHHTSSCSSCCBCHHHHHHHCGG-GBCTTBCBCHHHHHHHHHHTCBCBTTTS-CCSSCCCBSSSCCTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCccccCHHHHHHhccC-CCCCCCCCCHHHHHHHHHHhCCCccccc-CCccccccccccccccC
Confidence            99999999999999986 899999999999853 4689999999999999999999999999 998 32          2


Q ss_pred             CccccC-----C-----------CCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         229 AYCHIA-----N-----------TTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       229 ~~C~~~-----~-----------~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      +.|+..     .           ....+.+..|. +  .++++||++|+++|||+|+|+++ ++|++|++|||..+.+..
T Consensus       181 ~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~y~-v--~~~~~i~~~i~~~GPV~v~i~~~-~~f~~Y~~GVy~~~~~~~  256 (325)
T 3hhi_A          181 PPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYA-L--QGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGVYHHVSGQY  256 (325)
T ss_dssp             CBGGGCCCCCCCCCSSCSSTTSCCCCBCEEEEEE-E--CSHHHHHHHHHHHCCEEEEEEEE-HHHHTCCSSEECCCSCCE
T ss_pred             CCCCCcccCCcchhhcccccccccceEEeecceE-e--CCHHHHHHHHHHCCCEEEEEEec-cccccccCceecCCCCCC
Confidence            567610     0           02234567776 5  68999999999999999999998 799999999997654322


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEee
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT  350 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~~  350 (351)
                         .++|||+|||||+++|++|||||||||++||++|||||+|+.|+|||++++++++
T Consensus       257 ---~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~~~~~g~  311 (325)
T 3hhi_A          257 ---LGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGI  311 (325)
T ss_dssp             ---EEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCEEEEE
T ss_pred             ---CCCEEEEEEEEEecCCceEEEEEeCCCCCcccCCEEEEEcCCCeecCccceEEee
Confidence               5799999999999999999999999999999999999999999999999998764

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=100.00  E-value=2.8e-57  Score=441.04  Aligned_cols=252  Identities=29%  Similarity=0.574  Sum_probs=202.2

Q ss_pred             chhhhhcccccccceeecCeeccceeeccccCcccceeE---EEEEccCCCCCCcCcceeecC--C-CccccCCccCchh
Q psy3960          86 ENEKIRYNWTYIGEELVNGIILEKWRLVTSEGEKVSKYS---LWVRYNKASKDAIPVRYEMKG--Y-NSLLDQSVCGSCW  159 (351)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~plP~~~d~r~--~-~~v~dQg~cGSCW  159 (351)
                      ++|+-...|+ +|.+.|.|++.++|+..+..........   ............+|.+||||.  . .+|+|||.|||||
T Consensus        99 ~~N~~~~sy~-~g~N~FaDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DWR~~g~VtpVkdQG~CGSCW  177 (363)
T 3tnx_A           99 ETNKKNNSYW-LGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAW  177 (363)
T ss_dssp             HHTTSCCSEE-ECSCTTTTSCHHHHHHHHSCSSCSCCCCSSSSSSCCCCCSCCCCCSCEEGGGGTCCCCCCBCCSSBCHH
T ss_pred             HHHcCCCCeE-EeccccccCCHHHHHHHhcccccccccccccccccccCcccCCCCcceecccCCCCCCCccCCcCCchh
Confidence            3443333343 5889999999999976653221111000   000001112345677777764  3 3889999999999


Q ss_pred             hhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCCCCccccC-CCCc
Q psy3960         160 SFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIA-NTTA  238 (351)
Q Consensus       160 AfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~PY~~~~~~C~~~-~~~~  238 (351)
                      |||++++||+++++++|+++.||+|+|+||+.  .+.||+||.+..|++|+.++|+++|++| ||.+.++.|... ....
T Consensus       178 AFsa~~alE~~~~i~tg~~~~LSeQ~LvdC~~--~~~GC~GG~~~~a~~yi~~~Gi~~e~~y-PY~~~~~~c~~~~~~~~  254 (363)
T 3tnx_A          178 AFSAVSTIESIIKIRTGNLNEYSEQELLDCDR--RSYGCNGGYPWSALQLVAQYGIHYRNTY-PYEGVQRYCRSREKGPY  254 (363)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHTCBCBTTTS-CCCSSCCCCCGGGGCSC
T ss_pred             hhhhcccHHHHHHHHcCCCCCcCHHHHhcccC--CCCCCCCCChHHHHhHHHhcCccccccC-CCcCcCCCcccCCCCCc
Confidence            99999999999999999999999999999985  5689999999999999999999999999 999998877644 3355


Q ss_pred             eeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEE
Q psy3960         239 TATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVK  318 (351)
Q Consensus       239 ~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivk  318 (351)
                      ..++.++..++..++..++.+|++ |||+|+|++..++|++|++|||..+ |..   .++|||+|||||+    +|||||
T Consensus       255 ~~~~~~~~~~~~~~e~~l~~~v~~-gPvsvai~a~~~~F~~Y~sGVy~~~-~~~---~lnHaV~iVGyG~----~YWIVK  325 (363)
T 3tnx_A          255 AAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP-CGN---KVDHAVAAVGYGP----NYILIR  325 (363)
T ss_dssp             SBCCCEEEEECSSCHHHHHHHHTT-SCEEEEECCCSHHHHTEEEEEECCC-CCS---CCCEEEEEEEEET----TEEEEE
T ss_pred             eeeccceEEcchhhHHHHHHHHHc-CCcEEEEEecchhhhCCCCCEECCC-CCC---CCCeEEEEEEcCC----CcEEEE
Confidence            678888999988888888888865 9999999987789999999999764 644   4799999999985    599999


Q ss_pred             cCCCCCCCCCcEEEEEecCCe----eeecCCcEEee
Q psy3960         319 NSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVT  350 (351)
Q Consensus       319 NSWG~~WG~~GY~~Is~~~n~----cgi~~~~~~~~  350 (351)
                      ||||++||++|||||+|+.|+    |||+++|+||+
T Consensus       326 NSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a~yPi  361 (363)
T 3tnx_A          326 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV  361 (363)
T ss_dssp             CSBCTTSTBTTEEEEECCSCCSSCGGGTTSCEEEEE
T ss_pred             eCCCCccccCcEEEEEcCCCCCCCcCCccceeeecc
Confidence            999999999999999998644    99999999997

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=100.00  E-value=9.7e-56  Score=424.74  Aligned_cols=211  Identities=27%  Similarity=0.542  Sum_probs=175.6

Q ss_pred             CCcCcceeecCC-------CccccCCccCchhhhhhHHHHHHHHHHhcCC--ceecCHHHHhhhcCCCCCCCCCCCchHH
Q psy3960         135 DAIPVRYEMKGY-------NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKK--LAVLSQQALIDCSWGYGNNGCDGGEDFR  205 (351)
Q Consensus       135 ~plP~~~d~r~~-------~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~--~~~LS~q~l~dc~~~~~~~gC~GG~~~~  205 (351)
                      ..+|.+||+|..       .+|+|||.||||||||++++||++++++++.  ++.||+|+|+||+....+.||+||++..
T Consensus        62 ~~lP~s~DwR~~~~~c~~vtpVkdQg~CGSCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~~~~  141 (317)
T 3pbh_A           62 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAE  141 (317)
T ss_dssp             CCCCSSEEHHHHCTTCGGGTCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBCHHH
T ss_pred             cCCCCCEechhccCCCCCcCCccccCCccchHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCCHHH
Confidence            467888888743       4899999999999999999999999999863  8999999999998644578999999999


Q ss_pred             HHHHHHHcCCCCCCCCC------CCCC---------CCCccccCC--------CCcee---------eEeeEEEecCCCH
Q psy3960         206 SYQWIMKHGLPTQDDYG------PYLG---------QDAYCHIAN--------TTATA---------TMTGFVNVTPNSE  253 (351)
Q Consensus       206 a~~~l~~~Gi~~e~~y~------PY~~---------~~~~C~~~~--------~~~~~---------~i~~y~~v~~~~~  253 (351)
                      |++|++++||++|++|.      ||..         ..+.|+...        +...+         .......++ .++
T Consensus       142 A~~yi~~~Gi~te~~Y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~-~~e  220 (317)
T 3pbh_A          142 AWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVS-NSE  220 (317)
T ss_dssp             HHHHHHHTCEEBBCSTTCCCBSSCCCSCCCCCCCTTCCSCCCSCCCCCCCCCSCCSSCCSCGGGSEECBCCCEEEC-SCH
T ss_pred             HHHHHHHhCCCcchhccCCCCCcCcccCcccccccCcCCCCCCcCCCCcccccccCCCccceeeeeeeeeecccCC-cHH
Confidence            99999999999988773      8973         345564210        00011         112224553 589


Q ss_pred             HHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEE
Q psy3960         254 DALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLM  333 (351)
Q Consensus       254 ~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~I  333 (351)
                      ++||++|+++|||+|+|+++ ++|++|++|||..+ |..  ..++|||+|||||+++|++|||||||||++||++|||||
T Consensus       221 ~~i~~~i~~~GPV~v~i~~~-~~f~~Y~~GVy~~~-~~~--~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~ri  296 (317)
T 3pbh_A          221 KDIMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQHV-TGE--MMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI  296 (317)
T ss_dssp             HHHHHHHHHHCCEEEEEEEE-GGGGGEEEEEECCC-SCC--EEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEE
T ss_pred             HHHHHHHHHCCCEEEEEEec-ccccCCCCcEEccC-CCC--CCCCEEEEEEEEEEeCCeeEEEEEcCCCCCcCCCcEEEE
Confidence            99999999999999999997 89999999999765 432  256999999999999999999999999999999999999


Q ss_pred             EecCCeeeecCCcEEee
Q psy3960         334 SIKDNNCGVMTAPTYVT  350 (351)
Q Consensus       334 s~~~n~cgi~~~~~~~~  350 (351)
                      +|+.|+|||+++++..+
T Consensus       297 ~rg~n~CgI~~~~~a~~  313 (317)
T 3pbh_A          297 LRGQDHCGIESEVVAGI  313 (317)
T ss_dssp             ECSSCGGGTTTSCEECC
T ss_pred             EcCCCcccCCCceEeee
Confidence            99999999999988653

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=100.00  E-value=1.8e-55  Score=413.36  Aligned_cols=208  Identities=26%  Similarity=0.551  Sum_probs=175.0

Q ss_pred             CcCcceeecCC-------CccccCCccCchhhhhhHHHHHHHHHHhcC--CceecCHHHHhhhcCCCCCCCCCCCchHHH
Q psy3960         136 AIPVRYEMKGY-------NSLLDQSVCGSCWSFGTTGAVEGAYYMKHK--KLAVLSQQALIDCSWGYGNNGCDGGEDFRS  206 (351)
Q Consensus       136 plP~~~d~r~~-------~~v~dQg~cGSCWAfA~~~alE~~~~~~~g--~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a  206 (351)
                      .+|.+||+|..       .+|+|||.||||||||++++||++++++++  ..+.||+|+|+||+..+.+.||+||++..|
T Consensus         6 ~lP~~~D~R~~w~~~~~vt~VkdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~~~~a   85 (266)
T 3cbj_A            6 KLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEA   85 (266)
T ss_dssp             CCCSCEEHHHHSTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBCHHHH
T ss_pred             CCCccCcchhccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCCHHHH
Confidence            47888887643       388999999999999999999999999875  479999999999985334689999999999


Q ss_pred             HHHHHHcCCCC-------CCCCCCCC---------CCCCccccC----C----C----------CceeeEeeEEEecCCC
Q psy3960         207 YQWIMKHGLPT-------QDDYGPYL---------GQDAYCHIA----N----T----------TATATMTGFVNVTPNS  252 (351)
Q Consensus       207 ~~~l~~~Gi~~-------e~~y~PY~---------~~~~~C~~~----~----~----------~~~~~i~~y~~v~~~~  252 (351)
                      |+|++++|+++       |++| ||.         +..+.|+..    .    +          ...+.+ .+..++ .+
T Consensus        86 ~~y~~~~Gi~~~~~Y~~~e~~~-PY~~~~~~~~~~~~~~~C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~-~~~~v~-~~  162 (266)
T 3cbj_A           86 WNFWTRKGLVSGGLYESHVGCR-PYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGY-NSYSVS-NS  162 (266)
T ss_dssp             HHHHHHTCBCBCCSTTCCCSSS-CCCSCCCSCCCSCSSCCCCSCCCCCCCCCSCCTTCCSCTGGGCBCBS-CCEECC-SC
T ss_pred             HHHHHHhCcCcCcccccccccc-CcccccccccccCCCCCCccccCCCccccccCCCCcceeeeeeeeee-eeEEeC-CC
Confidence            99999999999       9999 998         345566431    0    0          011222 334564 58


Q ss_pred             HHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEE
Q psy3960         253 EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVL  332 (351)
Q Consensus       253 ~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~  332 (351)
                      +++||++|+++|||+++|++. ++|++|++|||..+ |..  ..++|||+|||||+++|++|||||||||++||++||||
T Consensus       163 ~~~i~~~i~~~GPV~v~i~~~-~~f~~Y~~Gvy~~~-~~~--~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~  238 (266)
T 3cbj_A          163 EKDIMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQHV-TGE--MMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFK  238 (266)
T ss_dssp             HHHHHHHHHHHCCEEEEEEEE-GGGGGCCSSEECCC-SSC--EEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEE
T ss_pred             HHHHHHHHHhcCCEEEEEEec-cchhhcCCeEEecC-CCC--ccCCeEEEEEEecccCCceEEEEEcCCCCccCCCCEEE
Confidence            999999999999999999998 79999999999764 432  25699999999999999999999999999999999999


Q ss_pred             EEecCCeeeecCCcEEee
Q psy3960         333 MSIKDNNCGVMTAPTYVT  350 (351)
Q Consensus       333 Is~~~n~cgi~~~~~~~~  350 (351)
                      |+|+.|+|||++.+++++
T Consensus       239 i~rg~n~cgI~~~~~~~~  256 (266)
T 3cbj_A          239 ILRGQDHCGIESEVVAGI  256 (266)
T ss_dssp             EECSSCGGGTTTSCEECC
T ss_pred             EEcCCCcccccCceEEEE
Confidence            999999999999999875

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=100.00  E-value=8.1e-55  Score=411.18  Aligned_cols=205  Identities=25%  Similarity=0.574  Sum_probs=182.2

Q ss_pred             CcCcceeecCC------CccccCC---ccCchhhhhhHHHHHHHHHHhcC-C--ceecCHHHHhhhcCCCCCCCCCCCch
Q psy3960         136 AIPVRYEMKGY------NSLLDQS---VCGSCWSFGTTGAVEGAYYMKHK-K--LAVLSQQALIDCSWGYGNNGCDGGED  203 (351)
Q Consensus       136 plP~~~d~r~~------~~v~dQg---~cGSCWAfA~~~alE~~~~~~~g-~--~~~LS~q~l~dc~~~~~~~gC~GG~~  203 (351)
                      .+|.+||+|..      .+|+||+   .||||||||++++||++++++++ +  .++||+|+|+||+.   ..||+||++
T Consensus        35 ~lP~~~DwR~~~~~~~vtpVkdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~---~~gC~GG~~  111 (277)
T 1deu_A           35 DLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGN---AGSCEGGND  111 (277)
T ss_dssp             GSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSS---SEETBEECH
T ss_pred             cCCCceecccCCCCCcCCccccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcC---CCCCCCCCH
Confidence            47888888863      4889999   99999999999999999999875 4  47999999999984   389999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCCCcccc-C--------------CCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEE
Q psy3960         204 FRSYQWIMKHGLPTQDDYGPYLGQDAYCHI-A--------------NTTATATMTGFVNVTPNSEDALKLALAKHGPVSV  268 (351)
Q Consensus       204 ~~a~~~l~~~Gi~~e~~y~PY~~~~~~C~~-~--------------~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v  268 (351)
                      ..||+|+.++|+++|++| ||.+.++.|+. .              .....+++.+|..++  ++++||++|+++|||++
T Consensus       112 ~~a~~yi~~~Gi~~e~~y-PY~~~~~~C~~~~~~~~~~~~~~c~~~~~~~~~~i~~y~~v~--~~~~i~~~i~~~GPV~v  188 (277)
T 1deu_A          112 LSVWDYAHQHGIPDETCN-NYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS--GREKMMAEIYANGPISC  188 (277)
T ss_dssp             HHHHHHHHHTCBCBGGGS-CCCSSCCCCCHHHHSEEEEETTEEEECSSCCCBCEEEEEEEC--SHHHHHHHHHHHCCEEE
T ss_pred             HHHHHHHHHcCCCcCccC-CCcCCCCCccccccccccccCcccccccCcceEEeceeEecC--CHHHHHHHHHHcCCEEE
Confidence            999999999999999999 99998888873 1              112457888898885  58899999999999999


Q ss_pred             EEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCC--------ee
Q psy3960         269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN--------NC  340 (351)
Q Consensus       269 ~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n--------~c  340 (351)
                      +|+++ ++|++|++|||..+.|..   .++|||+|||||+++|++|||||||||++||++|||||+|+.|        +|
T Consensus       189 ~i~~~-~~f~~Y~~GIy~~~~~~~---~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~c  264 (277)
T 1deu_A          189 GIMAT-ERLANYTGGIYAEYQDTT---YINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNL  264 (277)
T ss_dssp             EECCC-HHHHTCCSSEECBCCSCC---CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBT
T ss_pred             EEecc-cccccCcCcEECCCCCCC---cCCeEEEEEEecccCCccEEEEEeCCCCccCCCcEEEEEcCCCcccccccccc
Confidence            99998 799999999998766532   6899999999999999999999999999999999999999998        99


Q ss_pred             eecCCcEEee
Q psy3960         341 GVMTAPTYVT  350 (351)
Q Consensus       341 gi~~~~~~~~  350 (351)
                      |||++++|++
T Consensus       265 gIe~~~~~~~  274 (277)
T 1deu_A          265 AIEEHCTFGD  274 (277)
T ss_dssp             TTTSCEEEEE
T ss_pred             eeccccEeec
Confidence            9999999875

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=100.00  E-value=3e-54  Score=402.51  Aligned_cols=209  Identities=27%  Similarity=0.526  Sum_probs=172.7

Q ss_pred             CcCcceeecCC-------CccccCCccCchhhhhhHHHHHHHHHHhcC--CceecCHHHHhhhcCCCCCCCCCCCchHHH
Q psy3960         136 AIPVRYEMKGY-------NSLLDQSVCGSCWSFGTTGAVEGAYYMKHK--KLAVLSQQALIDCSWGYGNNGCDGGEDFRS  206 (351)
Q Consensus       136 plP~~~d~r~~-------~~v~dQg~cGSCWAfA~~~alE~~~~~~~g--~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a  206 (351)
                      .+|.+||+|..       .+|+|||.||||||||++++||++++++++  ..+.||+|+|+||+.. .+.||+||++..|
T Consensus         2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~~-~~~GC~GG~~~~a   80 (254)
T 3qsd_A            2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCES-CGLGCEGGILGPA   80 (254)
T ss_dssp             CCCSCEEHHHHCTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCTT-SBCTTBCBCHHHH
T ss_pred             CCCCcCccccccCCCCccCCCCCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhcC-CCCCCCCCCHHHH
Confidence            36777787743       388999999999999999999999999986  7899999999999853 4689999999999


Q ss_pred             HHHHHHcCCCCCCCCC------CCC---------CCCCccccCC---------CCc---------eeeEeeEEEecCCCH
Q psy3960         207 YQWIMKHGLPTQDDYG------PYL---------GQDAYCHIAN---------TTA---------TATMTGFVNVTPNSE  253 (351)
Q Consensus       207 ~~~l~~~Gi~~e~~y~------PY~---------~~~~~C~~~~---------~~~---------~~~i~~y~~v~~~~~  253 (351)
                      |+|++++|+++|++|.      ||.         +..+.|+...         +..         .........++ .++
T Consensus        81 ~~yi~~~Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~-~~~  159 (254)
T 3qsd_A           81 WDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVK-NDE  159 (254)
T ss_dssp             HHHHHHTCBCBCCCTTTCCSSSCCSSCCCBCSSCSSSCBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECC-SCH
T ss_pred             HHHHHHcCCCcccccccCcCcCCcccccccccccCcCCCCcccccCCccccccccCCccceeeeeeeeeeeeEecC-CcH
Confidence            9999999999987762      886         3444553210         000         00111223453 489


Q ss_pred             HHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEE
Q psy3960         254 DALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLM  333 (351)
Q Consensus       254 ~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~I  333 (351)
                      ++||++|+++|||+++|++. ++|++|++|||..+.+.   ..++|||+|||||++++++|||||||||++||++|||||
T Consensus       160 ~~i~~~l~~~gPv~~~~~~~-~~f~~y~~Gi~~~~~~~---~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i  235 (254)
T 3qsd_A          160 KAIQKEIMKYGPVEAGFTVY-EDFLNYKSGIYKHITGE---TLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRI  235 (254)
T ss_dssp             HHHHHHHHHHCCEEEEEEEE-GGGGGCCSSEECCCSSC---EEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEE
T ss_pred             HHHHHHHHHcCCEEEEEEec-cccccccCCeeccCCCC---CCCCeEEEEEEEeecCCeeEEEEEeCCCCCcccCCeEEE
Confidence            99999999999999999997 79999999999865442   257999999999999999999999999999999999999


Q ss_pred             EecCCeeeecCCcEEee
Q psy3960         334 SIKDNNCGVMTAPTYVT  350 (351)
Q Consensus       334 s~~~n~cgi~~~~~~~~  350 (351)
                      +|+.|+|||+++++..+
T Consensus       236 ~rg~n~CgI~~~~~~~~  252 (254)
T 3qsd_A          236 VRGRDECSIESEVTAGR  252 (254)
T ss_dssp             ECSSCGGGTTSSEEEEE
T ss_pred             EcCCCeecCCCceEeec
Confidence            99999999999998754

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=100.00  E-value=1.8e-51  Score=385.77  Aligned_cols=208  Identities=27%  Similarity=0.501  Sum_probs=166.9

Q ss_pred             cCcceeec-CCC---ccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCc-hHHHHHHHH
Q psy3960         137 IPVRYEMK-GYN---SLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGE-DFRSYQWIM  211 (351)
Q Consensus       137 lP~~~d~r-~~~---~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~-~~~a~~~l~  211 (351)
                      .-.|||.+ +.+   +|+|||.||||||||++++||+++++++++++.||+|+|+||+...++.||+||. ...++++++
T Consensus         9 ~~~dWR~~~~~~~it~VkdQg~CGSCWAFaa~~alE~~~~i~~~~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~~i~   88 (265)
T 2wbf_X            9 YCNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIE   88 (265)
T ss_dssp             CBCGGGCTTSTGGGSCCCBCTTSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHHHHH
T ss_pred             HHHhhccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHHHHH
Confidence            45566666 333   6899999999999999999999999999899999999999999755689999996 455568888


Q ss_pred             HcC-CCCCCCCCCCCCC--CCccccCCC-----------------CceeeEeeEEEecCC----C----HHHHHHHHHcC
Q psy3960         212 KHG-LPTQDDYGPYLGQ--DAYCHIANT-----------------TATATMTGFVNVTPN----S----EDALKLALAKH  263 (351)
Q Consensus       212 ~~G-i~~e~~y~PY~~~--~~~C~~~~~-----------------~~~~~i~~y~~v~~~----~----~~~ik~aL~~~  263 (351)
                      ++| +++|++| ||.+.  ++.|+....                 ...+++.+|..++..    +    +++||++|+++
T Consensus        89 ~~Ggi~~e~~y-PY~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ik~~i~~~  167 (265)
T 2wbf_X           89 DYGFLPAESNY-PYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNK  167 (265)
T ss_dssp             HHCCCCBTTTS-CCCGGGTTSCCCCCCTTCCCTTTTCEECCCCCSSSTTCCSSEEEEEGGGGTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCCCCcccc-CCcCCCCCCCCCCccccccccccccccccccCCCceeecCCceEeeccccccchhhHHHHHHHHHHhc
Confidence            887 9999999 99863  567875321                 234578888887652    4    47899999999


Q ss_pred             CCEEEEEEcCcccccccc-CcEEecCCCCCCCCCCCeEEEEEEEeee---CC--eeEEEEEcCCCCCCCCCcEEEEEe-c
Q psy3960         264 GPVSVAIDASQKSFSFYV-NGVYYDEKCNNSPDGLDHAVLAVGYGEL---DG--KPYWQVKNSWSTYWGNQGYVLMSI-K  336 (351)
Q Consensus       264 GPV~v~i~~~~~~f~~y~-~Giy~~~~~~~~~~~~~HaV~iVGyg~~---~g--~~ywivkNSWG~~WG~~GY~~Is~-~  336 (351)
                      |||+++|++.  +|..|. +|++....|+..  .++|||+|||||++   +|  ++|||||||||++||++|||||+| +
T Consensus       168 GPV~v~i~~~--~f~~y~~~g~~~~~~c~~~--~~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g  243 (265)
T 2wbf_X          168 GSVIAYIKAE--NVMGYEFSGKKVKNLCGDD--TADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYG  243 (265)
T ss_dssp             SCEEEEECGG--GGCSGGGGSSSEECCCCCS--CCCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSC
T ss_pred             CCEEEEEEcc--cccccccCCcEEcCCCCCC--cCCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecC
Confidence            9999999985  466664 454443457543  68999999999985   55  689999999999999999999997 5


Q ss_pred             CCeeeecCCcEEe
Q psy3960         337 DNNCGVMTAPTYV  349 (351)
Q Consensus       337 ~n~cgi~~~~~~~  349 (351)
                      .|.|||++.++++
T Consensus       244 ~n~Cgi~~~~~~~  256 (265)
T 2wbf_X          244 PTHCHFNFIHSVV  256 (265)
T ss_dssp             CTTCSSCSCCEEE
T ss_pred             CCccCcceeEEEE
Confidence            7899976655443

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=100.00  E-value=4.9e-48  Score=367.30  Aligned_cols=194  Identities=21%  Similarity=0.255  Sum_probs=164.6

Q ss_pred             CcCcceeecCCCccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHh--hhcCC-CCC-CCCCCCchHHHHHHHH
Q psy3960         136 AIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALI--DCSWG-YGN-NGCDGGEDFRSYQWIM  211 (351)
Q Consensus       136 plP~~~d~r~~~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~--dc~~~-~~~-~gC~GG~~~~a~~~l~  211 (351)
                      ++|.+||+|...+|+|||.||||||||++++||+++++ ++..+.||+|+|+  +|... .++ .+|.||++..|++|++
T Consensus        56 ~lP~s~DwR~~~pVkdQG~CGSCWAFAa~~alE~~~~~-~g~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~  134 (291)
T 3ois_A           56 ALPPKVDLTPPFQVYDQGRIGSCTANALAAAIQFERIH-DKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLH  134 (291)
T ss_dssp             TCCSEEECCCSSCCCBCTTSSCHHHHHHHHHHHHHHHH-TTCSSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHH
T ss_pred             cCCcceecccCCCcccCCCCccHHHHHHHHHHHHHHHH-hCCCCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHH
Confidence            47778888766699999999999999999999999864 6777899999998  67642 233 3588999999999999


Q ss_pred             HcCCCCCCCCCCCCCCC---CccccC--------------CCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCc
Q psy3960         212 KHGLPTQDDYGPYLGQD---AYCHIA--------------NTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQ  274 (351)
Q Consensus       212 ~~Gi~~e~~y~PY~~~~---~~C~~~--------------~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~  274 (351)
                      ++||++|++| ||.+.+   +.|+..              .....+++++|..|+. ++++||++|+++|||+++|.++ 
T Consensus       135 ~~Gi~~e~~y-PY~~~~~~~~~C~~~~~~~~~~~p~~~C~~~~~~~~i~~y~~v~~-~e~~i~~al~~~gPV~v~~~~~-  211 (291)
T 3ois_A          135 KLGVCPEKEW-PYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQ-DIDHLKACLAVGSPFVFGFSVY-  211 (291)
T ss_dssp             HTCCCBGGGS-CCCCCCCCTTTCSCCTTCGGGSCCCHHHHHHHGGGCCCEEEECCS-CHHHHHHHHHTTCCEEEEEEEE-
T ss_pred             HhCCCCHhhC-CCCCCccccccccccccccccCCCCHHHHhhcccceeccEEEcCc-CHHHHHHHHHcCCCEEEEEEec-
Confidence            9999999999 999874   345441              0134688999999976 8999999999999999999998 


Q ss_pred             cccccccC--cEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEec
Q psy3960         275 KSFSFYVN--GVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIK  336 (351)
Q Consensus       275 ~~f~~y~~--Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~  336 (351)
                      ++|+.|++  |||..+.|.. ...++|||+|||||+  +++|||||||||++||++|||||+|+
T Consensus       212 ~~f~~y~~~~Gi~~~~~~~~-~~~~~Hav~iVGy~~--~~~ywivkNSWG~~WG~~Gy~~i~~~  272 (291)
T 3ois_A          212 NSWVGNNSLPVRIPLPTKND-TLEGGHAVLCVGYDD--EIRHFRIRNSWGNNVGEDGYFWMPYE  272 (291)
T ss_dssp             HHHHGGGCCCSBCCCCCTTS-CEEEEEEEEEEEEET--TTTEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             cchhhcCCCCeEEeCCCCCC-CCcCCeEEEEEEEeC--CCCEEEEEeCCCCCCCCCcEEEEEHH
Confidence            79999998  9998877743 224699999999984  57899999999999999999999995

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=100.00  E-value=3.7e-39  Score=319.81  Aligned_cols=187  Identities=18%  Similarity=0.241  Sum_probs=145.7

Q ss_pred             CccccCCccCchhhhhhHHHHHHHHHHh-cCCceecCH----------------HHHhhhcCC------------CCCCC
Q psy3960         147 NSLLDQSVCGSCWSFGTTGAVEGAYYMK-HKKLAVLSQ----------------QALIDCSWG------------YGNNG  197 (351)
Q Consensus       147 ~~v~dQg~cGSCWAfA~~~alE~~~~~~-~g~~~~LS~----------------q~l~dc~~~------------~~~~g  197 (351)
                      .||+||++||+|||||++++||++++++ +++.+.||+                |+|+||+..            .++.|
T Consensus        61 tpVknQg~cGsCWaFs~~~~le~~~~~k~~~~~~~lSe~yl~fwDKlEkan~flq~lidc~~~~~~~d~R~v~~l~~~~g  140 (453)
T 2cb5_A           61 KPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPA  140 (453)
T ss_dssp             SSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCTT
T ss_pred             CCcccCCCccchHhhhhHHHHHHHHHHHhcCCeEeeChHHHHHHHHHHHhhHHHHHHHHHHhccCCcchhhHHHhcCCCC
Confidence            4789999999999999999999999999 578999999                999999854            34789


Q ss_pred             CCCCchHHHHHHHHHcCCCCCCCCCCCCCCC---------------------------C------c--------------
Q psy3960         198 CDGGEDFRSYQWIMKHGLPTQDDYGPYLGQD---------------------------A------Y--------------  230 (351)
Q Consensus       198 C~GG~~~~a~~~l~~~Gi~~e~~y~PY~~~~---------------------------~------~--------------  230 (351)
                      |+||....|++++.++|+++|++| ||....                           +      .              
T Consensus       141 cdGG~~~~a~~~i~kyGl~p~~~y-P~~~~s~ns~~mn~~L~~kLr~~a~~LR~~~~~g~~~~~l~~~k~~~l~~iy~il  219 (453)
T 2cb5_A          141 NDGGQWDMLVNIVEKYGVIPKKCF-PESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVV  219 (453)
T ss_dssp             CSCBCHHHHHHHHHHHCCCBGGGS-CCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHcCccchhhc-cccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 998741                           1      1              


Q ss_pred             --c----------cc-------------CC-----CCcee--eEeeEEE-------------------------------
Q psy3960         231 --C----------HI-------------AN-----TTATA--TMTGFVN-------------------------------  247 (351)
Q Consensus       231 --C----------~~-------------~~-----~~~~~--~i~~y~~-------------------------------  247 (351)
                        |          ..             .+     .....  .+.+|+.                               
T Consensus       220 ~~clG~pP~~F~~~~~dkd~~~~~~~~~TP~~F~~~~~~~~~~~~~yv~l~n~p~~~~py~~~y~v~~~~Nv~~g~~~~y  299 (453)
T 2cb5_A          220 CICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTVEYLSNMVGGRKTLY  299 (453)
T ss_dssp             HHHHCCCCSSEEEEEECTTSCEEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEEETTCCSSTTCCCCCE
T ss_pred             HHHcCCCCceeeEEEEccCCcccccCCCCHHHHHHHhcCCcCCCCCeEEEecCCCCcCcccceeEEeecCcccccccccc
Confidence              4          11             00     00011  3444443                               


Q ss_pred             --ecCCCH-HHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCC-------------------CCCCCCCeEEEEEE
Q psy3960         248 --VTPNSE-DALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN-------------------NSPDGLDHAVLAVG  305 (351)
Q Consensus       248 --v~~~~~-~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~-------------------~~~~~~~HaV~iVG  305 (351)
                        ++..+. +.++.+|.++|||++++++..  +.++++|||....|.                   ......+|||+|||
T Consensus       300 ~Nvp~~~l~~~~~~al~~g~PV~~~~Dv~~--~~~~k~GI~~~~~~~~~~~fg~~~~~m~KaeRl~~~~s~~~HAmlivG  377 (453)
T 2cb5_A          300 NNQPIDFLKKMVAASIKDGEAVWFGCDVGK--HFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTA  377 (453)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCEEEEECTTT--TEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEE
T ss_pred             cccCHHHHHHHHHHHHHcCCCEEEEEEeCh--hhccCCcEEcCccccchhhcCccccccCHHHHhhccCCCCCeEEEEEE
Confidence              322121 455688999999999999983  445599998765441                   01125799999999


Q ss_pred             Ee--ee-CCe-eEEEEEcCCCCCCCCCcEEEEEec
Q psy3960         306 YG--EL-DGK-PYWQVKNSWSTYWGNQGYVLMSIK  336 (351)
Q Consensus       306 yg--~~-~g~-~ywivkNSWG~~WG~~GY~~Is~~  336 (351)
                      ||  .+ +|+ +|||||||||++||++||++|+++
T Consensus       378 yg~~~d~~G~~~yWiVkNSWG~~wG~~GY~~ms~~  412 (453)
T 2cb5_A          378 VSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDE  412 (453)
T ss_dssp             EEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             eccccccCCCccEEEEEcCcCCCcCcCceEEechh
Confidence            99  65 677 899999999999999999999984

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=100.00  E-value=8.3e-37  Score=303.28  Aligned_cols=203  Identities=19%  Similarity=0.181  Sum_probs=140.5

Q ss_pred             ceeecCC-CccccCCccCchhhhhhHHHHHHHHHHh-cCCceecCH----------------HHHhhhcCC-C-------
Q psy3960         140 RYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMK-HKKLAVLSQ----------------QALIDCSWG-Y-------  193 (351)
Q Consensus       140 ~~d~r~~-~~v~dQg~cGSCWAfA~~~alE~~~~~~-~g~~~~LS~----------------q~l~dc~~~-~-------  193 (351)
                      +++.... .||+|||+||||||||++++||++++++ +++.++|||                |+|+||+.. .       
T Consensus        58 ~~~~~~~vtpVknQg~cGsCWaFs~~~~lE~~~~~~~~~~~~~LSe~yl~~~dklEkan~flq~lvdc~~~~~~~r~v~~  137 (457)
T 2e01_A           58 NTVVSTDSTPVTNQKSSGRCWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQY  137 (457)
T ss_dssp             SEECC------------CCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHH
T ss_pred             EEEecCCccCcccCCCCccchhHHhHHHHHHHHHHHhCCCceeeCChhhhhhhHHHHHHHHHHHHHHhcCCcccchhhhh
Confidence            3344433 4799999999999999999999999998 788999999                788999742 1       


Q ss_pred             --CCCCCCCCchHHHHHHHHHcCCCCCCCCCCC-CCC---------------------------------C---------
Q psy3960         194 --GNNGCDGGEDFRSYQWIMKHGLPTQDDYGPY-LGQ---------------------------------D---------  228 (351)
Q Consensus       194 --~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~PY-~~~---------------------------------~---------  228 (351)
                        .+.+|+||....+++++.++|+++|++| || +..                                 .         
T Consensus       138 l~~~~gcdGG~~~~a~~~i~kyGivpe~~y-P~~s~~s~ns~~~n~~L~~kLr~~a~~lR~~~~~~~~~~~~l~~~~~~~  216 (457)
T 2e01_A          138 LLAAPTEDGGQYSMFLNLVKKYGLIPKDLY-GDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQM  216 (457)
T ss_dssp             HHHCTTCSCBCHHHHHHHHHHHCCCBGGGS-CSCSHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred             hccCCCCCCCCHHHHHHHHHHcCccchhhc-CCcccCcccHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHH
Confidence              4789999999999999999999999999 99 311                                 0         


Q ss_pred             ------------CccccC---CC--------------------------------------------CceeeE-------
Q psy3960         229 ------------AYCHIA---NT--------------------------------------------TATATM-------  242 (351)
Q Consensus       229 ------------~~C~~~---~~--------------------------------------------~~~~~i-------  242 (351)
                                  |.|...   ..                                            ...+.+       
T Consensus       217 l~~iy~il~~~LG~pP~~~~~~F~~~~~dkd~~~~~~~~TP~~F~~~~v~~~~~dyV~l~n~p~~py~~~y~ve~~~N~~  296 (457)
T 2e01_A          217 QREIFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIKIDRLGNVL  296 (457)
T ss_dssp             HHHHHHHHHHHSCCCSSCTTSCEEEEEECTTSCEEEEEECHHHHHHHTTCCCTTSEEEEECCTTSCTTCEEEETTCCSST
T ss_pred             HHHHHHHHHHHcCCCCCCCCceEEEEEEcCCCCccCCCcChHHHHHHHcCCCchheEEEeecCCCccCeeEEEeccCCee
Confidence                        001110   00                                            000010       


Q ss_pred             ----eeEEEecCCC-HHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCC-----------------CCCCCCCeE
Q psy3960         243 ----TGFVNVTPNS-EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN-----------------NSPDGLDHA  300 (351)
Q Consensus       243 ----~~y~~v~~~~-~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~-----------------~~~~~~~Ha  300 (351)
                          ..|.+++... .+.++.+|.++|||++++++.  .|++|++||+....|.                 ......+||
T Consensus       297 ~g~~~~y~Nvp~d~l~~~~~~aL~~g~PV~~~~Dv~--~~~~~~~GI~~~~~~~~~~fg~~~~m~KaeRl~~~~s~~~HA  374 (457)
T 2e01_A          297 GGDAVIYLNVDNETLSKLVVKRLQNNKAVFFGSHTP--KFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTAA  374 (457)
T ss_dssp             TCCCEEEEECCHHHHHHHHHHHHHTTCCEEEEECTT--TTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEE
T ss_pred             cCCceeEEEcCHHHHHHHHHHHHHhCCCEEEEEEcC--HhHcccCceecccccchhhcCcccccCHHHhhccCCCCCCeE
Confidence                1244443211 155677899999999999998  3777899999644320                 011257999


Q ss_pred             EEEEEEeee-CCe--eEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEe
Q psy3960         301 VLAVGYGEL-DGK--PYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV  349 (351)
Q Consensus       301 V~iVGyg~~-~g~--~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~  349 (351)
                      |+|||||.+ +|+  +|||||||||++||++||++|+++    .++..+..+
T Consensus       375 mlivGyg~d~~G~~p~yW~VkNSWG~~wG~~GY~~ms~~----wf~ey~~~i  422 (457)
T 2e01_A          375 MLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQK----YFEEYCFQI  422 (457)
T ss_dssp             EEEEEEEECTTTCCEEEEEEECSSCTTSTBTTEEEEEHH----HHHHHEEEE
T ss_pred             EEEEEEEeccCCCccCEEEEEeCccCCcCCCceEEeehh----hHhhccEEE
Confidence            999999986 788  899999999999999999999984    444444443

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=100.00  E-value=1.3e-33  Score=274.89  Aligned_cols=186  Identities=18%  Similarity=0.245  Sum_probs=136.9

Q ss_pred             CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcC----------CCCCCCCCCCchHHHHHHHHHcCCC
Q psy3960         147 NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW----------GYGNNGCDGGEDFRSYQWIMKHGLP  216 (351)
Q Consensus       147 ~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~----------~~~~~gC~GG~~~~a~~~l~~~Gi~  216 (351)
                      .||+||++||||||||++++||+++++++++.+.||+|+|++|..          ...+.||+||....|+++++++||+
T Consensus        23 tpVknQg~cGsCWaFSa~~~lE~~~~~k~~~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~Giv  102 (383)
T 3pw3_A           23 TSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETFGLV  102 (383)
T ss_dssp             CCCCBCCBSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHTCCC
T ss_pred             CCcccCCCCcHHHHHHhHHHHHHHHHHHcCCCCccChHHHHhhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHcCcC
Confidence            589999999999999999999999999999999999999999973          1235799999999999999999999


Q ss_pred             CCCCCCC------CCCCCC-------------cccc--C--------C-------------------------C------
Q psy3960         217 TQDDYGP------YLGQDA-------------YCHI--A--------N-------------------------T------  236 (351)
Q Consensus       217 ~e~~y~P------Y~~~~~-------------~C~~--~--------~-------------------------~------  236 (351)
                      +|++| |      +...+.             .+..  .        .                         .      
T Consensus       103 pe~~Y-P~~~~~~~~s~n~~~m~~~L~~~Lr~~a~~~~r~l~~~~~~~~~~~~~i~~il~~~LG~pP~~F~~~gk~~TP~  181 (383)
T 3pw3_A          103 PEEEM-RPGMMYADTLSNHTELSALTDAMVAAIAKGKLRKLQSDENNAMLWKKAVAAVHQIYLGVPPEKFTYKGKEYTPK  181 (383)
T ss_dssp             BGGGS-CTTGGGTCSSCBCHHHHHHHHHHHHHHHSSCCSSCCBCTTCCBHHHHHHHHHHHHHHCCCCSSEEETTEEECHH
T ss_pred             cHHhC-CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHhCCCCceEEecCCCcCHH
Confidence            99999 8      221110             0000  0        0                         0      


Q ss_pred             ----CceeeEeeE----------------------------EEecCCC-HHHHHHHHHcCCCEEEEEEcCccccccccCc
Q psy3960         237 ----TATATMTGF----------------------------VNVTPNS-EDALKLALAKHGPVSVAIDASQKSFSFYVNG  283 (351)
Q Consensus       237 ----~~~~~i~~y----------------------------~~v~~~~-~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~G  283 (351)
                          .......+|                            .+++-.. .+.+..+|.++-||.++.+|+...|.  +.|
T Consensus       182 ~F~~~v~~~~~dyV~l~n~p~~py~~~y~ve~~~N~~~g~~~Nvp~d~l~~~~~~~Lk~G~~V~fg~DV~~~~f~--~~G  259 (383)
T 3pw3_A          182 SFFESTGLKASDYVSLTSYTHHPFYTQFPLEIQDNWRHGMSYNLPLDEFMEVFDNAINTGYTIAWGSDVSESGFT--RDG  259 (383)
T ss_dssp             HHHHHHTCCGGGEEEEECCSSSCTTCEEECCCTTCTTCCEEEECCHHHHHHHHHHHHHTTCCEEEEEECCSTTBC--TTS
T ss_pred             HHHHHhCCCccceEEEeeCCCCccCceEEEecCCCccCCccCCcCHHHHHHHHHHHHHcCCcEEEEcccCccccC--CCc
Confidence                000011122                            2222101 23455666778899999999944555  889


Q ss_pred             EEecCCCC-------------------------------------------CCCCCCCeEEEEEEEee-eCCeeEEEEEc
Q psy3960         284 VYYDEKCN-------------------------------------------NSPDGLDHAVLAVGYGE-LDGKPYWQVKN  319 (351)
Q Consensus       284 iy~~~~~~-------------------------------------------~~~~~~~HaV~iVGyg~-~~g~~ywivkN  319 (351)
                      |...+...                                           +.....+|||+|||||. ++|++||+|||
T Consensus       260 i~~~~~~~~~~~~~g~~~~~~~~~~kaer~~~~~~~~e~~~tk~~R~~~~d~~~t~~~Ha~~ivG~~~d~~g~~yw~vkN  339 (383)
T 3pw3_A          260 VAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKWCTQAERQLAYDNYETTDDHGMQIYGIAKDQEGNEYYMVKN  339 (383)
T ss_dssp             EECCBCHHHHHHHSSCCHHHHHTSCHHHHCTTTSCCCBCCCCHHHHHHHHHTTSSCCEEEEEEEEEEECTTCCEEEEEEC
T ss_pred             eeeCcchhhHHHhcCcchhhhccCCHHHhhhccCCCcccCCCHHHHHHHhhhccCcCCeEEEEEEEEEcCCCceEEEEEe
Confidence            88543110                                           01124579999999997 57889999999


Q ss_pred             CCCCCCCCCcEEEEEe
Q psy3960         320 SWSTYWGNQGYVLMSI  335 (351)
Q Consensus       320 SWG~~WG~~GY~~Is~  335 (351)
                      |||++||++||++|++
T Consensus       340 SWg~~~g~~Gy~~m~~  355 (383)
T 3pw3_A          340 SWGTNSKYNGIWYASK  355 (383)
T ss_dssp             SBCSCSTTTTEEEEEH
T ss_pred             CCCCCCCcCCeEEecH
Confidence            9999999999999997

>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A

Probab=97.55  E-value=0.0022  Score=55.21  Aligned_cols=132  Identities=12%  Similarity=0.095  Sum_probs=92.4

Q ss_pred             cCCccCchhhhhhHHHHHHHHHHhc--------CCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCC
Q psy3960         151 DQSVCGSCWSFGTTGAVEGAYYMKH--------KKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYG  222 (351)
Q Consensus       151 dQg~cGSCWAfA~~~alE~~~~~~~--------g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~  222 (351)
                      .||.-+-|-+|+.++.|........        -....+|+|+|.+          .|..+...++|++..|-...  + 
T Consensus        26 TQg~~~WCa~Y~~aAilN~~~nt~~~nA~~iMr~~yPN~s~~~l~~----------t~~~~~q~Iky~~s~G~~~~--~-   92 (183)
T 1pxv_A           26 QQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPN----------CATFPNQMIEYGKSQGRDIH--Y-   92 (183)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHHHSTTSCTTTGGG----------CCBCHHHHHHHHHHTTCCCE--E-
T ss_pred             ccCcCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhh----------cCCCHHHHHHHHHHcCcChh--H-
Confidence            6999999999999998877652111        0123455555554          36678899999987664311  1 


Q ss_pred             CCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEE
Q psy3960         223 PYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVL  302 (351)
Q Consensus       223 PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~  302 (351)
                                             .+- .-+.+++|+.|.++-||.+...-.           +.    +......+||++
T Consensus        93 -----------------------~nr-~ls~neV~~~i~~Nk~I~v~~~~v-----------~e----~~~~~~~gHA~a  133 (183)
T 1pxv_A           93 -----------------------QEG-VPSYNQVDQLTKDNVGIMILAQSV-----------SQ----NPNDPHLGHALA  133 (183)
T ss_dssp             -----------------------EES-CCCHHHHHHHHHTTCCEEEEEECC-----------CS----STTSCCCEEEEE
T ss_pred             -----------------------hcC-CCCHHHHHHHHhcCCcEEEEcccc-----------cc----CCCCccCceeEE
Confidence                                   110 125889999999999999887532           11    111226799999


Q ss_pred             EEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCe
Q psy3960         303 AVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN  339 (351)
Q Consensus       303 iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~  339 (351)
                      ||||-..++.++.+|-|=|     ++|++-++.+.+.
T Consensus       134 v~Gya~~~~~~~y~~WNPW-----~~~~~~~~a~S~~  165 (183)
T 1pxv_A          134 VVGNAKINDQEKLIYWNPW-----DTELSIQDADSSL  165 (183)
T ss_dssp             EEEEEEETTEEEEEEECTT-----CSSCEEEETTCCE
T ss_pred             EEeeeecCCCeEEEEeCCc-----cCCcEeecCCCCe
Confidence            9999998899999999988     3488888877553

>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4

Probab=97.31  E-value=0.004  Score=58.91  Aligned_cols=132  Identities=12%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             cCCccCchhhhhhHHHHHHHHHHhc--------CCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCC
Q psy3960         151 DQSVCGSCWSFGTTGAVEGAYYMKH--------KKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYG  222 (351)
Q Consensus       151 dQg~cGSCWAfA~~~alE~~~~~~~--------g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~  222 (351)
                      -||.-+-|-+||.+++|........        .....+|+++|.+          .|..+...++|++..|..      
T Consensus       202 TQg~~pWCa~Ya~aailN~~~~t~~~nA~~iMr~~yPN~S~~~l~~----------ts~~~~q~Iky~qsyG~~------  265 (367)
T 1x9y_A          202 QQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPN----------CATFPNQMIEYGKSQGRD------  265 (367)
T ss_dssp             CCSSSSCHHHHHHHHHHHHHTTCSCCCHHHHHHHHCTTSCTTTGGG----------CCCCHHHHHHHHHHTTEE------
T ss_pred             ccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhh----------cCCCHHHHHHHHHHhCcc------
Confidence            7999999999999998866542110        0123445555544          366788999999865542      


Q ss_pred             CCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEE
Q psy3960         223 PYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVL  302 (351)
Q Consensus       223 PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~  302 (351)
                                         +.-....  -+.+.+++.+.++-||++......+.               ......+|||+
T Consensus       266 -------------------~~~~n~~--ls~deVk~~id~Nk~I~v~~~~v~~~---------------~n~~~~gHAla  309 (367)
T 1x9y_A          266 -------------------IHYQEGV--PSYNQVDQLTKDNVGIMILAQSVSQN---------------PNDPHLGHALA  309 (367)
T ss_dssp             -------------------EEEEESC--CCHHHHHHHHHTTCCEEEEEEETTSC---------------SSSCCCSEEEE
T ss_pred             -------------------hhhhcCC--CCHHHHHHHHhcCCcEEEEccccccC---------------CCCccCceeEE
Confidence                               1111112  25789999999999999888654111               01125799999


Q ss_pred             EEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCe
Q psy3960         303 AVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN  339 (351)
Q Consensus       303 iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~  339 (351)
                      ||||-..++.+|.++-|=|   |  ++++-++...+.
T Consensus       310 vvGyA~~~~~~~y~~WNPW---~--~~~~~~sa~S~~  341 (367)
T 1x9y_A          310 VVGNAKINDQEKLIYWNPW---D--TELSIQDADSSL  341 (367)
T ss_dssp             EEEEEEETTEEEEEEECTT---C--SSCEEEETTCCE
T ss_pred             EEeccccCCCcEEEEecCc---c--CCceeecCCCCe
Confidence            9999887888999998888   3  457887775543

>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1

Probab=97.10  E-value=0.028  Score=48.12  Aligned_cols=131  Identities=16%  Similarity=0.203  Sum_probs=92.2

Q ss_pred             cCCccCchhhhhhHHHHHHHHHHhc--------CCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCC
Q psy3960         151 DQSVCGSCWSFGTTGAVEGAYYMKH--------KKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYG  222 (351)
Q Consensus       151 dQg~cGSCWAfA~~~alE~~~~~~~--------g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~  222 (351)
                      -||.-+-|-+|+.+++|........        .....+|+++|..+          |..+...++|++..|-..  ++ 
T Consensus        17 TQg~~pWCa~Ya~aailN~~~~~~~~~A~~imr~~yPn~S~~~l~~~----------~~t~~e~iky~~s~g~~~--~~-   83 (174)
T 1cv8_A           17 TQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFT----------GLTPREMIYFGQTQGRSP--QL-   83 (174)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHHC----------CCCHHHHHHHHHHTTCCC--EE-
T ss_pred             ccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCCHHHHhhc----------CCCHHHHHHHHHHcCCCh--hh-
Confidence            6999999999999999877662211        12457888888854          456788999988765410  11 


Q ss_pred             CCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEE
Q psy3960         223 PYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVL  302 (351)
Q Consensus       223 PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~  302 (351)
                                             .+ ..-+.+++|+++.++-|+.+..+-. +    ...           ....+||++
T Consensus        84 -----------------------~n-~~ls~~eV~~~~~~nk~i~i~~~~v-e----~~~-----------~~~~gHAla  123 (174)
T 1cv8_A           84 -----------------------LN-RMTTYNEVDNLTKNNKGIAILGSRV-E----SRN-----------GMHAGHAMA  123 (174)
T ss_dssp             -----------------------ES-SCCCHHHHHHHHHTTCCEEEEEEES-S----CBT-----------TBCCEEEEE
T ss_pred             -----------------------hc-CCCCHHHHHHHHhcCCceEEEcccc-c----CCC-----------CCCCceeEE
Confidence                                   00 0125789999999999998877532 1    111           115789999


Q ss_pred             EEEEeee-CCeeEEEEEcCCCCCCCCCcEEEEEecCCe
Q psy3960         303 AVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIKDNN  339 (351)
Q Consensus       303 iVGyg~~-~g~~ywivkNSWG~~WG~~GY~~Is~~~n~  339 (351)
                      ||||-.. +|.++.++-|=|     +++.+-++.+.+.
T Consensus       124 v~Gy~~~~ng~~~y~~WNPW-----~~~~~~~s~~s~~  156 (174)
T 1cv8_A          124 VVGNAKLNNGQEVIIIWNPW-----DNGFMTQDAKNNV  156 (174)
T ss_dssp             EEEEEEETTSCEEEEEECTT-----CSSCEEEETTCCE
T ss_pred             EEeeeeecCCceEEEEeCCc-----cCCcEEecCCCCe
Confidence            9999985 778999999988     3567777776543

>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}

Probab=90.44  E-value=0.61  Score=42.09  Aligned_cols=66  Identities=21%  Similarity=0.299  Sum_probs=42.3

Q ss_pred             EEEecCCCHHHHHHHHHcCCCEEEEEEcCcc-----ccccc--cCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEE
Q psy3960         245 FVNVTPNSEDALKLALAKHGPVSVAIDASQK-----SFSFY--VNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQV  317 (351)
Q Consensus       245 y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~-----~f~~y--~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywiv  317 (351)
                      ...++..+.++|+.+|.++-||.|-+...-+     .|..+  .+|-...       ....|+|+|+||++    +..+|
T Consensus       124 ~~dltG~sl~~L~~~I~~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~-------~~~~H~VVl~GYd~----~~vyi  192 (236)
T 3erv_A          124 AVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNNGDVSI-------TYNEHCVVLIGYDQ----ESVYI  192 (236)
T ss_dssp             EEECTTSCHHHHHHHHHTTCCEEEEEETTSSCCCGGGCEEEEETTEEEEE-------CTTEEEEEEEEECS----SEEEE
T ss_pred             eeecCCCCHHHHHHHHHCCCeEEEEEeCCcccccccccceeecCCCceee-------ccCCeEEEEEEEeC----CEEEE
Confidence            3456667899999999999999998754310     11111  1233211       13579999999996    24455


Q ss_pred             EcCC
Q psy3960         318 KNSW  321 (351)
Q Consensus       318 kNSW  321 (351)
                      .+.+
T Consensus       193 ~DP~  196 (236)
T 3erv_A          193 RDPL  196 (236)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            5554

>4d8b_A Streptopain; papain fold, cysteine protease, secreted, hydrolase; 1.06A {Streptococcus pyogenes} PDB: 4d8e_A* 4d8i_A* 2uzj_A* 2jtc_A

Probab=80.15  E-value=2.1  Score=39.13  Aligned_cols=54  Identities=22%  Similarity=0.498  Sum_probs=40.8

Q ss_pred             HHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCC--CCcE
Q psy3960         253 EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWG--NQGY  330 (351)
Q Consensus       253 ~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG--~~GY  330 (351)
                      .+.|+.+|.++.||.++-.-                    .  .++||.+|=||+.   ++|+-|  -||  ||  .+||
T Consensus       171 ~~~I~~eL~~grPV~~~G~~--------------------~--~gGHAwViDGY~~---~~~~H~--NwG--WgG~~nGY  221 (261)
T 4d8b_A          171 EAQIDKELSQNQPVYYQGVG--------------------K--VGGHAFVIDGADG---RNFYHV--NWG--WGGVSDGF  221 (261)
T ss_dssp             HHHHHHHHHTTCCEEEEEEE--------------------T--TEEEEEEEEEEES---SSCEEE--ECS--STTTTCEE
T ss_pred             HHHHHHHHHcCCCEEEEeec--------------------C--CCceEEEEccccc---CCEEEE--EcC--CCCCCCce
Confidence            36799999999999876520                    0  4789999999985   467777  355  44  5899


Q ss_pred             EEEEe
Q psy3960         331 VLMSI  335 (351)
Q Consensus       331 ~~Is~  335 (351)
                      +.+..
T Consensus       222 y~l~~  226 (261)
T 4d8b_A          222 FRLDA  226 (261)
T ss_dssp             ECTTC
T ss_pred             eeccc
Confidence            98875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	2e-46
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	2e-45
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	6e-45
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	2e-44
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	2e-43
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	4e-43
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	4e-41
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	9e-40
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	4e-39
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	2e-38
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	1e-37
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	1e-36
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	3e-36
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	2e-35
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	7e-35
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	1e-34
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	1e-33
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	8e-33
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	2e-31
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	3e-30
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	1e-06
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	2e-05

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 2e-45
 Identities = 74/198 (37%), Positives = 100/198 (50%), Gaps = 5/198 (2%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ +CGSCW+F  TG VEG +++    L  LS+Q L+DC     +  C GG    +Y  I
Sbjct: 18  DQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM--DKACMGGLPSNAYSAI 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
              G    +D   Y G    C  +   A   +   V ++ N E  L   LAK GP+SVAI
Sbjct: 76  KNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQN-EQKLAAWLAKRGPISVAI 134

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           +A      FY +G+    +   SP  +DHAVL VGYG+    P+W +KNSW T WG +GY
Sbjct: 135 NAFG--MQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGY 192

Query: 331 VLMSIKDNNCGVMTAPTY 348
             +      CGV T  + 
Sbjct: 193 YYLHRGSGACGVNTMASS 210

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 6e-45
 Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 37/231 (16%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKL--AVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
           DQ  CGSCW+FG   A+     +         +S + L+ C      +GC+GG    ++ 
Sbjct: 23  DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 82

Query: 209 WIMKHGLPTQDDYGPYLGQDAY------CHIANTTATATMTGFVN--------------- 247
           +  + GL +   Y  ++G   Y       H+  +    T  G                  
Sbjct: 83  FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 142

Query: 248 ----------VTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGL 297
                        NSE  +   + K+GPV  A       F  Y +GVY            
Sbjct: 143 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQHVTGEMMGG-- 199

Query: 298 DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 348
            HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +    
Sbjct: 200 -HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVA 249

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 2e-44
 Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 5/203 (2%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALID-CSWGYGNNGCDGGEDFRSYQW 209
            Q  CG+CW+F   GA+E    +K  KL  LS Q L+D  +  YGN GC+GG    ++Q+
Sbjct: 18  YQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQY 77

Query: 210 IMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
           I+ +     D   PY   D  C   +    AT + +  +    ED LK A+A  GPVSV 
Sbjct: 78  IIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVG 137

Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
           +DA   SF  Y +GVYY+  C  +   ++H VL VGYG+L+GK YW VKNSW   +G +G
Sbjct: 138 VDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEG 194

Query: 330 YVLMSI-KDNNCGVMTAPTYVTM 351
           Y+ M+  K N+CG+ + P+Y  +
Sbjct: 195 YIRMARNKGNHCGIASFPSYPEI 217

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (371), Expect = 2e-43
 Identities = 88/206 (42%), Positives = 121/206 (58%), Gaps = 7/206 (3%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F  TGA+EG  + K  KL  LS+Q L+DCS   GN GC+GG   R++Q++
Sbjct: 18  NQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYV 77

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
            ++G    ++  PY+  D  C      + A  TGF  V P  E AL  A+A  GP+SVA+
Sbjct: 78  KENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAM 137

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGY----GELDGKPYWQVKNSWSTYWG 326
           DA   SF FY +G+Y++   + S   LDH VL VGY       D   YW VKNSW   WG
Sbjct: 138 DAGHSSFQFYKSGIYFE--PDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWG 195

Query: 327 NQGYVLMSI-KDNNCGVMTAPTYVTM 351
           + GYV ++  K+N+CG+ TA +Y  +
Sbjct: 196 SNGYVKIAKDKNNHCGIATAASYPNV 221

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (369), Expect = 4e-43
 Identities = 91/202 (45%), Positives = 120/202 (59%), Gaps = 5/202 (2%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F + GA+EG    K  KL  LS Q L+DC        C GG    ++Q++
Sbjct: 18  NQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG--CGGGYMTNAFQYV 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
            K+     +D  PY+GQ+  C    T   A   G+  +   +E ALK A+A+ GPVSVAI
Sbjct: 76  QKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAI 135

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DAS  SF FY  GVYYDE CN+  D L+HAVLAVGYG   G  +W +KNSW   WGN+GY
Sbjct: 136 DASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGY 193

Query: 331 VLMSI-KDNNCGVMTAPTYVTM 351
           +LM+  K+N CG+    ++  M
Sbjct: 194 ILMARNKNNACGIANLASFPKM 215

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  141 bits (356), Expect = 4e-41
 Identities = 72/202 (35%), Positives = 96/202 (47%), Gaps = 11/202 (5%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F T   VEG   +    L  LS+Q L+DC       GC GG    S Q++
Sbjct: 18  NQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY--GCKGGYQTTSLQYV 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
             +G+ T   Y     Q              +TG+  V  N E +   ALA + P+SV +
Sbjct: 76  ANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALA-NQPLSVLV 134

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           +A  K F  Y +GV+           LDHAV AVGYG  DGK Y  +KNSW   WG +GY
Sbjct: 135 EAGGKPFQLYKSGVFDGPCGTK----LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGY 190

Query: 331 VLMSIKDNN----CGVMTAPTY 348
           + +  +  N    CGV  +  Y
Sbjct: 191 MRLKRQSGNSQGTCGVYKSSYY 212

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 9e-40
 Identities = 83/206 (40%), Positives = 115/206 (55%), Gaps = 8/206 (3%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F  TGA+EG  + K  +L  LS+Q L+DCS   GN GC+GG    ++Q++
Sbjct: 114 NQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV 173

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
             +G    ++  PY   +      N   +          P  E AL  A+A  GP+SVAI
Sbjct: 174 QDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAI 232

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWG 326
           DA  +SF FY  G+Y++  C  S + +DH VL VGYG    E D   YW VKNSW   WG
Sbjct: 233 DAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 290

Query: 327 NQGYVLMSI-KDNNCGVMTAPTYVTM 351
             GYV M+  + N+CG+ +A +Y T+
Sbjct: 291 MGGYVKMAKDRRNHCGIASAASYPTV 316

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score =  136 bits (342), Expect = 4e-39
 Identities = 66/201 (32%), Positives = 93/201 (46%), Gaps = 7/201 (3%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
            Q  CG CW+F     VEG   +    L  LS+Q LIDC       GC+GG     +Q+I
Sbjct: 18  SQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFI 77

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +G    ++  PY  QD  C++                P + +        + PVSVA+
Sbjct: 78  INNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVAL 137

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA+  +F  Y +G++           +DHAV  VGYG   G  YW VKNSW T WG +GY
Sbjct: 138 DAAGDAFKQYSSGIFTGPCGTA----IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGY 193

Query: 331 VLMS---IKDNNCGVMTAPTY 348
           + +         CG+ T P+Y
Sbjct: 194 MRILRNVGGAGTCGIATMPSY 214

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  134 bits (338), Expect = 2e-38
 Identities = 77/203 (37%), Positives = 101/203 (49%), Gaps = 10/203 (4%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F T  AVEG   +K  KL  LS+Q L+DC     N GC+GG    ++++I
Sbjct: 19  DQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ-NQGCNGGLMDYAFEFI 77

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
            + G  T +   PY   D  C ++   A A         P +++   L    + PVSVAI
Sbjct: 78  KQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAI 137

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQG 329
           DA    F FY  GV+           LDH V  VGYG  +DG  YW VKNSW   WG +G
Sbjct: 138 DAGGSDFQFYSEGVFTGSCGTE----LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKG 193

Query: 330 YVLMS----IKDNNCGVMTAPTY 348
           Y+ M      K+  CG+    +Y
Sbjct: 194 YIRMERGISDKEGLCGIAMEASY 216

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score =  132 bits (332), Expect = 1e-37
 Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F T  AVEG   +    L  LS+Q L+DC+     +GC GG    ++Q+I
Sbjct: 18  NQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN--HGCRGGWMNPAFQFI 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +G    ++  PY GQD  C+        ++  + NV  ++E +L+ A   + PVSV +
Sbjct: 76  VNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKA-VANQPVSVTM 134

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DA+ + F  Y +G++      +     +HA+  VGYG  + K +W VKNSW   WG  GY
Sbjct: 135 DAAGRDFQLYRSGIFTGSCNIS----ANHALTVVGYGTENDKDFWIVKNSWGKNWGESGY 190

Query: 331 VLMS----IKDNNCGVMTAPTY 348
           +         D  CG+    +Y
Sbjct: 191 IRAERNIENPDGKCGITRFASY 212

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score =  128 bits (321), Expect = 3e-36
 Identities = 65/202 (32%), Positives = 88/202 (43%), Gaps = 15/202 (7%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F T   VE    ++   L  LS+Q L+DC     N+GC GG    +YQ+I
Sbjct: 18  NQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK--KNHGCLGGAFVFAYQYI 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +G        PY      C  A+   +       N  P   +          P +VAI
Sbjct: 76  INNGGIDTQANYPYKAVQGPCQAASKVVSIDG---YNGVPFCNEXALKQAVAVQPSTVAI 132

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           DAS   F  Y +G++           L+H V  VGY       YW V+NSW  YWG +GY
Sbjct: 133 DASSAQFQQYSSGIFSGPCGTK----LNHGVTIVGY----QANYWIVRNSWGRYWGEKGY 184

Query: 331 VLMS--IKDNNCGVMTAPTYVT 350
           + M        CG+   P Y T
Sbjct: 185 IRMLRVGGCGLCGIARLPYYPT 206

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  126 bits (317), Expect = 2e-35
 Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
            Q  CGSCW+F     VEG   ++  KL  LS+Q L+DC     ++GC GG    + +++
Sbjct: 18  HQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR--SHGCKGGYPPYALEYV 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
            K+G+  +  Y     Q               +G   V PN+E  L  A+A   PVSV +
Sbjct: 76  AKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVVV 134

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           ++  + F  Y  G++           +DHAV AVGYG+  GK Y  +KNSW T WG +GY
Sbjct: 135 ESKGRPFQLYKGGIFEGPCGTK----VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGY 190

Query: 331 VLMSIKDNN----CGVMTAPTYVT 350
           + +     N    CG+  +  Y T
Sbjct: 191 IRIKRAPGNSPGVCGLYKSSYYPT 214

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score =  125 bits (315), Expect = 7e-35
 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 23/215 (10%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F + G+VE  Y ++  KL  LS+Q L+DCS+     GC+GG    +++ +
Sbjct: 35  DQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKN--YGCNGGLINNAFEDM 92

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           ++ G    D   PY+         +              P+++    L       +SVA+
Sbjct: 93  IELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRFLGPISISVAV 152

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----------ELDGKPYWQVKNS 320
                 F+FY  G++  E  +     L+HAV+ VG+G          + +   Y+ +KNS
Sbjct: 153 S---DDFAFYKEGIFDGECGDQ----LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNS 205

Query: 321 WSTYWGNQGYVLMS----IKDNNCGVMTAPTYVTM 351
           W   WG +G++ +          CG+ T      +
Sbjct: 206 WGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 240

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  124 bits (311), Expect = 1e-34
 Identities = 64/201 (31%), Positives = 92/201 (45%), Gaps = 10/201 (4%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           DQ  CGSCW+F   G VE  +++    L  LS+Q L+ C             +   +   
Sbjct: 18  DQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQ 77

Query: 211 MKHG-LPTQDDYGPYLGQDAYCHI--ANTTATATMTGFVNVTPNSEDALKLALAKHGPVS 267
             +G + T+D Y    G+        +  T  AT+TG V + P  E  +   LA +GPV+
Sbjct: 78  ENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVEL-PQDEAQIAAWLAVNGPVA 136

Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
           VA+DAS         G       +     LDH VL VGY +    PYW +KNSW+T WG 
Sbjct: 137 VAVDASSW---MTYTGGVMTSCVSEQ---LDHGVLLVGYNDSAAVPYWIIKNSWTTQWGE 190

Query: 328 QGYVLMSIKDNNCGVMTAPTY 348
           +GY+ ++   N C V    + 
Sbjct: 191 EGYIRIAKGSNQCLVKEEASS 211

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score =  121 bits (304), Expect = 1e-33
 Identities = 70/204 (34%), Positives = 101/204 (49%), Gaps = 12/204 (5%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F    AVE    ++  +L  LS+Q L+DC     ++GC+GG    ++Q+I
Sbjct: 18  NQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDT--ASHGCNGGWMNNAFQYI 75

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           + +G        PY                ++ GF  VT N+E AL+ A+A   PVSV +
Sbjct: 76  ITNGGIDTQQNYPYSAVQ-GSCKPYRLRVVSINGFQRVTRNNESALQSAVASQ-PVSVTV 133

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           +A+   F  Y +G++             H V+ VGYG   GK YW V+NSW   WGNQGY
Sbjct: 134 EAAGAPFQHYSSGIFTGPCGTAQN----HGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGY 189

Query: 331 VLMS----IKDNNCGVMTAPTYVT 350
           + M          CG+   P+Y T
Sbjct: 190 IWMERNVASSAGLCGIAQLPSYPT 213

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  119 bits (298), Expect = 8e-33
 Identities = 60/202 (29%), Positives = 83/202 (41%), Gaps = 15/202 (7%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
           +Q  CGSCW+F     +EG   ++   L   S+Q L+DC      +    G    S   +
Sbjct: 18  NQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDR---RSYGCNGGYPWSALQL 74

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
           +        +  PY G   YC        A  T  V       +   L    + PVSV +
Sbjct: 75  VAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVL 134

Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
           +A+ K F  Y  G++     N      DHAV AVGYG      Y  +KNSW T WG  GY
Sbjct: 135 EAAGKDFQLYRGGIFVGPCGNKV----DHAVAAVGYGP----NYILIKNSWGTGWGENGY 186

Query: 331 VLMSIKDNN----CGVMTAPTY 348
           + +     N    CG+ T+  Y
Sbjct: 187 IRIKRGTGNSYGVCGLYTSSFY 208

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score =  117 bits (294), Expect = 2e-31
 Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 8/227 (3%)

Query: 128 RYNKASKDAIPVRYEMKGYNSLLD---QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQ 184
               +     P   +++   ++     Q  CGS W+F    A E AY     +   L++Q
Sbjct: 78  TNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQ 137

Query: 185 ALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTG 244
            L+DC+     +GC G    R  ++I  +G+   + Y  Y+ ++  C   N         
Sbjct: 138 ELVDCAS---QHGCHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSCRRPNAQRFGISNY 193

Query: 245 FVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAV 304
                PN+    +     H  ++V I         + +G    ++ N       HAV  V
Sbjct: 194 CQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN-YHAVNIV 252

Query: 305 GYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 351
           GY    G  YW V+NSW T WG+ GY   +   +   +   P  V +
Sbjct: 253 GYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 299

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 3e-30
 Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 16/203 (7%)

Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
               CGSCW+  +T A+     +K K     +  ++ +         C+GG D   + + 
Sbjct: 57  IPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYA 116

Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNV------------TPNSEDALKL 258
            +HG+P +                             +            + +  + +  
Sbjct: 117 HQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMA 176

Query: 259 ALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVK 318
            +  +GP+S  I A++   + Y  G+Y + +     +   H V   G+G  DG  YW V+
Sbjct: 177 EIYANGPISCGIMATE-RLANYTGGIYAEYQDTTYIN---HVVSVAGWGISDGTEYWIVR 232

Query: 319 NSWSTYWGNQGYVLMSIKDNNCG 341
           NSW   WG +G++ +       G
Sbjct: 233 NSWGEPWGERGWLRIVTSTYKDG 255

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 23/116 (19%)

Query: 240 ATMTGFVNVTPNS-EDALKLALAKHGPVSVAIDASQKSFSFYVNGVY------YDEKCNN 292
                ++NV   +    +   L  +  V       +  F     GV       Y     N
Sbjct: 299 GDAVIYLNVDNETLSKLVVKRLQNNKAVFFGSHTPK--FMDKKTGVMDIELWNYPAIGYN 356

Query: 293 SPD-----------GLDHAVLAVGYG--ELDGKP-YWQVKNSWSTYWGNQGYVLMS 334
            P             + HA+L  G    E    P  ++V+NSW    G  G  +M+
Sbjct: 357 LPQQKASRIRYHESLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMT 412

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 298 DHAVLAVGYG---ELDGKP-YWQVKNSWSTYWGNQGYVLMS 334
            HA+         + DG    W+V+NSW    G++GY+ M+
Sbjct: 370 THAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMT 410

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	100.0
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	100.0
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	100.0
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	100.0
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	100.0
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	100.0
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	100.0
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	100.0
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	100.0
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	100.0
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	100.0
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	100.0
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	100.0
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	100.0
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	100.0
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	100.0
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	99.76
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	99.7
d1pxva_	183	Staphopain SspB {Staphylococcus aureus [TaxId: 128	96.16
d1cv8a_	173	Staphopain StpA {Staphylococcus aureus [TaxId: 128	95.6

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-56  Score=424.59  Aligned_cols=250  Identities=37%  Similarity=0.728  Sum_probs=209.1

Q ss_pred             ccceeecCeeccceeeccccCcccceeEEEEEccCCCCCCcCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHH
Q psy3960          97 IGEELVNGIILEKWRLVTSEGEKVSKYSLWVRYNKASKDAIPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYM  173 (351)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~  173 (351)
                      +|.+.|.|++.++|...............-. ........+|.+||||.  + .||+|||.||||||||+++++|+++++
T Consensus        58 ~g~N~fsDlt~eEf~~~~~~~~~~~~~~~~~-~~~~~~~~lP~s~Dwr~~g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i  136 (316)
T d1cs8a_          58 MAMNAFGDMTSEEFRQVMNGFQNRKPRKGKV-FQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFR  136 (316)
T ss_dssp             ECCCTTTTCCHHHHHHHHCCBCCCCCSCCEE-CCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHH
T ss_pred             EeceeccccCcHHHHhhhccccccccccCcc-ccCcccccCCCceECCcCCcccccccCCCCceeeehhhhHHHHHHHHh
Confidence            7889999999998876663221111000001 11223445777777775  3 489999999999999999999999999


Q ss_pred             hcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcC-CCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCC
Q psy3960         174 KHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNS  252 (351)
Q Consensus       174 ~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~G-i~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~  252 (351)
                      +++..+.||+|+|+||+...++.+|+||....|++|+.++| +++|+.+ ||.+....|.........++..+... ..+
T Consensus       137 ~~~~~~~lS~Q~lvdC~~~~~~~~c~gg~~~~a~~y~~~~g~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  214 (316)
T d1cs8a_         137 KTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQ  214 (316)
T ss_dssp             HHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTS-CCCSSCCCCCCCGGGEEECCCCEEEC-CSC
T ss_pred             hcCCcccchhhhhhhccccccCCCCCCCchHHHHHHHHhcCcccccccc-cccccccccccccccccccccccccc-cCc
Confidence            99999999999999999777788999999999999999996 6778778 99999888887777677777777766 458


Q ss_pred             HHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeee----CCeeEEEEEcCCCCCCCCC
Q psy3960         253 EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGEL----DGKPYWQVKNSWSTYWGNQ  328 (351)
Q Consensus       253 ~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~----~g~~ywivkNSWG~~WG~~  328 (351)
                      .++|+++|+.+|||++++.+....|.+|++|||+.+.|+..  .++|||+|||||.+    ++.+|||||||||++||++
T Consensus       215 ~~~l~~~l~~~gpv~v~i~~~~~~f~~y~~Gi~~~~~c~~~--~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~  292 (316)
T d1cs8a_         215 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE--DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMG  292 (316)
T ss_dssp             HHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCTTCCSS--CCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBT
T ss_pred             HHHHHHHHHHhCCeEEEEEeccchhccccCCcccCCCCCCC--cCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccC
Confidence            89999999999999999999878899999999999888654  68999999999975    6789999999999999999


Q ss_pred             cEEEEEecC-CeeeecCCcEEeeC
Q psy3960         329 GYVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       329 GY~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                      |||||+|+. |.|||++.|+||+|
T Consensus       293 GY~ri~r~~~n~CGI~~~~~yP~v  316 (316)
T d1cs8a_         293 GYVKMAKDRRNHCGIASAASYPTV  316 (316)
T ss_dssp             TEEEEECSSSSGGGTTTSCEEECC
T ss_pred             CEEEEeeCCCCcCccCCeeeeeeC
Confidence            999999974 89999999999986

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=100.00  E-value=5.3e-55  Score=414.95  Aligned_cols=247  Identities=23%  Similarity=0.456  Sum_probs=201.4

Q ss_pred             cceeecCeeccceeeccccCcccc-----eeEEEE-EccCCCCCCcCcceeecCC---CccccCCccCchhhhhhHHHHH
Q psy3960          98 GEELVNGIILEKWRLVTSEGEKVS-----KYSLWV-RYNKASKDAIPVRYEMKGY---NSLLDQSVCGSCWSFGTTGAVE  168 (351)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~plP~~~d~r~~---~~v~dQg~cGSCWAfA~~~alE  168 (351)
                      +.+.|.|++.++|...+.......     ...... .........+|.+||||..   .||+|||.||||||||++++||
T Consensus        42 ~~N~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DwR~~g~vtpVkdQG~CGsCwAfa~~~~lE  121 (302)
T d1xkga1          42 AINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATE  121 (302)
T ss_dssp             CCCTTTTSCHHHHHHHHSBCHHHHHHHHHHHC-----CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHH
T ss_pred             CCCcCCCCCHHHHHHHhcCCCcccccccccCCCCccccccccCCCCCcceeccccCccccceeccccceehhhhhHHhHH
Confidence            678888999888876553221100     000000 1111123457777777753   3889999999999999999999


Q ss_pred             HHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEe
Q psy3960         169 GAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNV  248 (351)
Q Consensus       169 ~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v  248 (351)
                      +++++++++.+.||+|+|+||+   .+.+|.||....|++|+.++|+++|++| ||.+.++.|+.... ..+++.+|..+
T Consensus       122 ~~~~i~~~~~~~lS~q~lvdC~---~~~~C~gG~~~~a~~~~~~~Gi~~e~~y-PY~~~~~~C~~~~~-~~~~~~~~~~~  196 (302)
T d1xkga1         122 SAYLAYRDQSLDLAEQELVDCA---SQHGCHGDTIPRGIEYIQHNGVVQESYY-RYVAREQSCRRPNA-QRFGISNYCQI  196 (302)
T ss_dssp             HHHHHHHCCCCCBCHHHHHHHT---CSSTTBCCCHHHHHHHHHHHCEEBGGGS-CCCSSCCCCCCCSS-CEECCSEEEEC
T ss_pred             HHHHHhcCCcccchhHHHHhcc---ccCccCCCccchhhhhhccCcccchhhc-cccccccccccccc-ccceeeeeeee
Confidence            9999999999999999999998   4689999999999999999999999999 99999999986544 45778899988


Q ss_pred             cCCCHHHHHHHHHcC-CCEEEEEEcC-ccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCC
Q psy3960         249 TPNSEDALKLALAKH-GPVSVAIDAS-QKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWG  326 (351)
Q Consensus       249 ~~~~~~~ik~aL~~~-GPV~v~i~~~-~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG  326 (351)
                      ...+.++|+++|+.. +|+++.+.+. ...|.+|++|++..+.|+..  .++|||+|||||+++|.+|||||||||++||
T Consensus       197 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~gi~~~~~~~~~--~~~HaV~iVGyg~~~g~~YWivkNSWG~~WG  274 (302)
T d1xkga1         197 YPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQ--PNYHAVNIVGYSNAQGVDYWIVRNSWDTNWG  274 (302)
T ss_dssp             CSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCSSC--CEEEEEEEEEEEEETTEEEEEEECSBCTTST
T ss_pred             cCchHHHHHHhhhhcccccceeecccccchhhccccceeecCCCCCC--cCCEEEEEEEEeccCCeEEEEEEcCCCCchh
Confidence            888999999999874 4555554443 24688899999988888654  5789999999999999999999999999999


Q ss_pred             CCcEEEEEecCCeeeecCCcEEeeC
Q psy3960         327 NQGYVLMSIKDNNCGVMTAPTYVTM  351 (351)
Q Consensus       327 ~~GY~~Is~~~n~cgi~~~~~~~~~  351 (351)
                      ++|||||+|+.|.|||+++|++|+|
T Consensus       275 e~GY~~i~~~~n~cgi~~~~~~~~~  299 (302)
T d1xkga1         275 DNGYGYFAANIDLMMIEEYPYVVIL  299 (302)
T ss_dssp             BTTEEEEECSSCGGGTTTCCEEEEC
T ss_pred             cCCEEEEECCCCeeccCCCcEEEEe
Confidence            9999999999999999999999986

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-53  Score=383.08  Aligned_cols=211  Identities=40%  Similarity=0.830  Sum_probs=189.9

Q ss_pred             cCcceeecCC---CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCC-CCCCCCCCCchHHHHHHHHH
Q psy3960         137 IPVRYEMKGY---NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWG-YGNNGCDGGEDFRSYQWIMK  212 (351)
Q Consensus       137 lP~~~d~r~~---~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~-~~~~gC~GG~~~~a~~~l~~  212 (351)
                      ||.+||||..   .||+|||.||||||||++++||++++++++....||+|++++|... ..+.+|+||....|+.++.+
T Consensus         1 LP~~~Dwr~~~~vtpV~dQG~cGsCwAfA~~~~~e~~~~i~~~~~~~~S~~~~~~~~~~~~~~~gc~gg~~~~a~~~~~~   80 (217)
T d2h7ja1           1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID   80 (217)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCTTBCCCHHHHHHHHHH
T ss_pred             CCCcccCCcCCCCCCCccCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHhhhhhcccccCCCCCCCcccceeeehhh
Confidence            5777887763   4789999999999999999999999999999999999999999854 35689999999999987776


Q ss_pred             c-CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCC
Q psy3960         213 H-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN  291 (351)
Q Consensus       213 ~-Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~  291 (351)
                      . |+++++.| ||...+..|.........++..+........+.||++|+.+|||++++....++|..+++|||..+.+.
T Consensus        81 ~~g~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~~~~~~  159 (217)
T d2h7ja1          81 NKGIDSDASY-PYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT  159 (217)
T ss_dssp             HTCEEBTTTS-CCCSSCCCCCCCGGGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSCBCCTTCC
T ss_pred             cccccccccC-CCcccccccccccccccceeeeeeccCccHHHHHHHHhhcCceEEEEEeeehhhhcccCCcceeCCCCC
Confidence            6 89999999 999988888777777888899999988888999999999999999999877688999999999877654


Q ss_pred             CCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC-CeeeecCCcEEeeC
Q psy3960         292 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       292 ~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                      .   .++|||+|||||++.+++|||||||||++||++|||||+|+. |.||||++|+||+|
T Consensus       160 ~---~~~Hav~iVGy~~~~~~~ywivrNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  217 (217)
T d2h7ja1         160 Q---NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  217 (217)
T ss_dssp             S---CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             C---CCCeEEEEEecccCCCceEEEEEcCCCCCcccCCEEEEecCCCCcCCccccccceeC
Confidence            3   689999999999999999999999999999999999999975 99999999999986

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-53  Score=379.77  Aligned_cols=209  Identities=45%  Similarity=0.873  Sum_probs=188.3

Q ss_pred             CcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcC
Q psy3960         138 PVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHG  214 (351)
Q Consensus       138 P~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~G  214 (351)
                      |.+||+|.  + .||+|||.||||||||+++++|++++++++..++||+|+|++|..  ...+|.||....|+++++..|
T Consensus         2 P~~~DwR~~~~vtpV~dQG~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~c~~--~~~~c~G~~~~~a~~~~~~~g   79 (215)
T d2r6na1           2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNR   79 (215)
T ss_dssp             CSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCGGGCCCHHHHHHHHHHHT
T ss_pred             CCCEeCccCCCCCCCccCccChhHHHHHHHHHHHHHHHHHhCCCccchhhhhhhccc--ccCccCCcchhhHHHHHHhcC
Confidence            66677665  4 477999999999999999999999999999999999999999985  457899999999999999997


Q ss_pred             -CCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCC
Q psy3960         215 -LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNS  293 (351)
Q Consensus       215 -i~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~  293 (351)
                       +++|..| ||......|..........+..+...+..+.++||++|+++|||++.+.+..+.|..|++|++....|...
T Consensus        80 ~~~~~~~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~~~~~~~~  158 (215)
T d2r6na1          80 GIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD  158 (215)
T ss_dssp             CEEBTTTS-CCCSSCCCCCCCGGGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCTT
T ss_pred             ccccccCC-CcccccccccccccccceeecceeeccccHHHHHHHhhcccccEEEEEEeeechhcccCCCcccCCCCCCC
Confidence             7889999 99888777777677777888889888888999999999999999999987768899999999988777543


Q ss_pred             CCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC-CeeeecCCcEEeeC
Q psy3960         294 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       294 ~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                        .++|||+|||||++.+++|||||||||++||++|||||+|+. |.|||++.++||.|
T Consensus       159 --~~~Hav~iVGy~~~~~~~ywivrNSWG~~WGe~Gy~~i~~~~~n~Cgi~~~~~~p~~  215 (215)
T d2r6na1         159 --NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             --CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEEEC
T ss_pred             --CCCeeEEEEEeeccCCCcEEEEEcCCCCCcccCCeEEEEeCCCCcCcccCccccccC
Confidence              789999999999999999999999999999999999999975 89999999999986

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-52  Score=378.83  Aligned_cols=212  Identities=43%  Similarity=0.885  Sum_probs=190.0

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      ||.+||+|.  + .||+|||.||||||||++++||+++.++++..+.||+|++++|....++.+|+||+...|++++.+.
T Consensus         1 LP~~~DwR~~~~vtpV~dQG~cGsCwAfA~~~~~e~~~~~~~~~~~~lS~~~~~~~~~~~~~~~~~gg~~~~a~~~~~~~   80 (221)
T d1fh0a_           1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKEN   80 (221)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCCCHHHHHHHHHHH
T ss_pred             CCCCeeCCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccccceeEEeccccCCcccCCCchhhhhhhhhhc
Confidence            577888876  4 4789999999999999999999999999999999999999999876678899999999999999999


Q ss_pred             C-CCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 G-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 G-i~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      | ++++++| ||...+..|.........++..+.........++|++|+++|||++++.+..+.|++|++|++..+.+..
T Consensus        81 g~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~~~~~~~  159 (221)
T d1fh0a_          81 GGLDSEESY-PYVAVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSS  159 (221)
T ss_dssp             TCEEBTTTS-CCCSSCCCCCCCGGGEEECCSCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCS
T ss_pred             CccccccCc-CccccccccccccccccccceeeeecCCcHHHHHHHHHHhcCCceEEEEeccccccccCCCccccccccc
Confidence            6 7899999 9999888777666667778888888777788999999999999999999987889999999998777654


Q ss_pred             CCCCCCeEEEEEEEeee----CCeeEEEEEcCCCCCCCCCcEEEEEecC-CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGEL----DGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~----~g~~ywivkNSWG~~WG~~GY~~Is~~~-n~cgi~~~~~~~~~  351 (351)
                      .  .++|+|+|||||.+    ++.+|||||||||++||++|||||+|+. |.|||+++|+||+|
T Consensus       160 ~--~~~ha~~ivG~g~~~~~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~n~CgI~~~~~yp~~  221 (221)
T d1fh0a_         160 K--NLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV  221 (221)
T ss_dssp             S--CCCEEEEEEEEEESSSCTTSSEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             c--CCcccEEEeeEeccCcCCCCceEEEEEeCCCCCcccCCEEEEEeCCCCccccCCCcccccC
Confidence            3  68999999999974    6788999999999999999999999974 88999999999986

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-52  Score=376.52  Aligned_cols=208  Identities=38%  Similarity=0.715  Sum_probs=176.9

Q ss_pred             CcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcC
Q psy3960         138 PVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHG  214 (351)
Q Consensus       138 P~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~G  214 (351)
                      |.+||+|.  + .+|+|||.||||||||++++||+++++++++.++||+|++++|..  .+.+|.||....+++++.+.|
T Consensus         2 P~~~D~R~~~~vtpV~dQg~cGsCwAfa~~~~le~~~~~~~~~~~~~S~q~~~~c~~--~~~gc~G~~~~~~~~~~~~~g   79 (214)
T d1m6da_           2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDK--MDKACMGGLPSNAYSAIKNLG   79 (214)
T ss_dssp             CSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCS--SSCTTBCCCHHHHHHHHHHHT
T ss_pred             CCceeCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHHcCCCcccCHHHhccccc--cCCccCCCcchhhHHHHHhCC
Confidence            66677765  3 488999999999999999999999999999999999999999985  578999999999999999986


Q ss_pred             -CCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCC
Q psy3960         215 -LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNS  293 (351)
Q Consensus       215 -i~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~  293 (351)
                       +++|.++ ||.+....|..........+..+... ..+.++||++|+++|||+++|.+.  .|.++..|++....+...
T Consensus        80 ~~~~e~~~-py~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ik~~i~~~gpv~~~~~~~--~~~~~~~g~~~~~~~~~~  155 (214)
T d1m6da_          80 GLETEDDY-SYQGHMQSCQFSAEKAKVYIQDSVEL-SQNEQKLAAWLAKRGPISVAINAF--GMQFYRHGISRPLRPLCS  155 (214)
T ss_dssp             CBCBTTTS-CCCSSCCCCCCCGGGCCBCCSEEEEC-CSCHHHHHHHHHHHCCEEEEECTH--HHHHCCSSEECCCGGGSC
T ss_pred             cccccccc-cccCccCcccccccccceeeeccccc-ccCHHHHHHHHHhcCCeEEEEEEE--ehhhccCCccccccCCCC
Confidence             7888899 99988877776655555566555544 558899999999999999999987  455555555543333323


Q ss_pred             CCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEeeC
Q psy3960         294 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM  351 (351)
Q Consensus       294 ~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~~~  351 (351)
                      ...++|||+|||||++++++|||||||||++||++|||||+|+.|.|||+++++||++
T Consensus       156 ~~~~~HaV~iVGyg~~~~~~ywivkNSWG~~WGd~Gy~~i~~g~n~cgI~~~~~~~~~  213 (214)
T d1m6da_         156 PWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV  213 (214)
T ss_dssp             TTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEEC
T ss_pred             CcccceeEEEEcccccCCceEEEEECCCCCccccCCEEEEEcCCCcccccceeeEEec
Confidence            4478999999999999999999999999999999999999999999999999999986

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=4.6e-52  Score=374.63  Aligned_cols=207  Identities=34%  Similarity=0.684  Sum_probs=180.0

Q ss_pred             cCcceeecCC---CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKGY---NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~~---~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      ||.+||+|..   .+|+|||.||||||||++++||++++++++..++||+|+|++|..  ...+|.||....+++++++.
T Consensus         1 LP~~~Dwr~~~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~~~~--~~~~~~G~~~~~~~~~~~~~   78 (216)
T d1ppoa_           1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER--RSHGCKGGYPPYALEYVAKN   78 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCS--SSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcccCCcCCCCCCcccCCcCchHHHHHHHHHHHHHHHHHhCCCCCccHHHHhhhhh--ccCccccccccccccccccc
Confidence            5777777763   478999999999999999999999999999999999999999985  56789999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccccCCC-CceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 GLPTQDDYGPYLGQDAYCHIANT-TATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 Gi~~e~~y~PY~~~~~~C~~~~~-~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      |+++|++| ||......|..... .....+..+..+....++.||++|.+ |||++++.+..+.|..|++|+|..+.+. 
T Consensus        79 G~~~e~~y-Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-gpv~~~~~~~~~~~~~y~~g~~~~~~~~-  155 (216)
T d1ppoa_          79 GIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGPCGT-  155 (216)
T ss_dssp             CBCBTTTS-CCCSSCCCCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECCSCCS-
T ss_pred             CccccccC-CccccccccccccccccceeeccceeecccHHHHHHHHHhh-CCCceeeeeccccceecCCccccccccc-
Confidence            99999999 99998888876543 34455566666767678888888865 8999999998678889999999765432 


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||++++++|||||||||++||++|||||+|+.    |.|||+++|+||+.
T Consensus       156 ---~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (216)
T d1ppoa_         156 ---KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  215 (216)
T ss_dssp             ---CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred             ---cCCcEEEEEeccccCCCceEEEECCCCCCcccCCEEEEEcCCCCCCCcCccccEeeeeec
Confidence               579999999999999999999999999999999999999975    45999999999984

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=1.6e-51  Score=371.90  Aligned_cols=206  Identities=34%  Similarity=0.645  Sum_probs=178.5

Q ss_pred             CcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcC
Q psy3960         138 PVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHG  214 (351)
Q Consensus       138 P~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~G  214 (351)
                      |.+||+|.  + .||+|||.||||||||++++||++++++++..+.||+|+|++|..  .+.+|.|+....++.++++.|
T Consensus         2 P~~~DwR~~~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~c~~--~~~g~~g~~~~~~~~~~~~~g   79 (218)
T d1yala_           2 PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDK--HSYGCKGGYQTTSLQYVANNG   79 (218)
T ss_dssp             CSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHHC
T ss_pred             CCCEeCCCCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccchhhhhcccc--ccCCCcccccchhhhhhhhhc
Confidence            56666665  4 478999999999999999999999999999999999999999985  577899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCc-cccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCC
Q psy3960         215 LPTQDDYGPYLGQDAY-CHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNS  293 (351)
Q Consensus       215 i~~e~~y~PY~~~~~~-C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~  293 (351)
                      +++|+++ ||...+.. |.........++..+..++..+. +++++|+.+|||++++.+..+.|+.|++|||..+.+.  
T Consensus        80 ~~~e~~~-py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~~~~~~--  155 (218)
T d1yala_          80 VHTSKVY-PYQAKQYKCRATDKPGPKVKITGYKRVPSNCE-TSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGT--  155 (218)
T ss_dssp             BCBTTTS-CCCSSCCCCCGGGCCSCCBCCSEEEECCSSBH-HHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSCCS--
T ss_pred             ccccccC-CcccccCccccccccccceeeccceEeCCccH-HHHHHHHHhCCceEEEEecccchhhcccceeeecccc--
Confidence            9999999 99987654 33444566678888888876554 5566677889999999998778899999999765432  


Q ss_pred             CCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEeeC
Q psy3960         294 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM  351 (351)
Q Consensus       294 ~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~~  351 (351)
                        .++|||+|||||++++++|||||||||++||++|||||+|++    |.|||++.|+||+.
T Consensus       156 --~~~Hav~IVGyg~~~g~~ywivkNSWG~~WGd~Gy~~I~~~~~~~~~~CGI~~~~~~p~~  215 (218)
T d1yala_         156 --KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK  215 (218)
T ss_dssp             --CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEEC
T ss_pred             --cCCcEEEEEEeeccCCceEEEEECCCCCCcccCCEEEEEccCCCCCCcCCccceeeeccC
Confidence              579999999999999999999999999999999999999975    67999999999973

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=100.00  E-value=1.1e-50  Score=364.96  Aligned_cols=206  Identities=32%  Similarity=0.678  Sum_probs=180.8

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      ||.+||+|.  + .||+|||.||||||||++++||++++++++..+.||+|+|++|+.  ...||.||+...|++|+.++
T Consensus         1 LP~~~DwR~~~~itpV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~~c~~--~~~gc~Gg~~~~a~~y~~~~   78 (216)
T d1cqda_           1 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT--ANHGCRGGWMNPAFQFIVNN   78 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcccCCcCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCccccHHHhhhccc--ccCCCCCcchHHHHHHHHhc
Confidence            578888876  3 478999999999999999999999999999999999999999985  46799999999999999999


Q ss_pred             C-CCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 G-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 G-i~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      | +..|++| ||.+....|........+++..+..+...+ +++++.|...+||++++.+....|..|++|+|....   
T Consensus        79 g~~~~e~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~~~~---  153 (216)
T d1cqda_          79 GGINSEETY-PYRGQDGICNSTVNAPVVSIDSYENVPSHN-EQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSC---  153 (216)
T ss_dssp             TSBCBTTTS-CCCSSCCCCCSSSCCCSBCCSEEEECCSSC-HHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCCC---
T ss_pred             CCccccccC-CccccccccccccCCceeEeeeEEecCCcc-hhhHHHHhhcCCcceeeeeecccccccccCcccccc---
Confidence            7 5567888 999988888777777778888888886644 566777778899999999987889999999996532   


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEee
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVT  350 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~  350 (351)
                       ...++|||+|||||++++++|||||||||++||++|||||+|+.    |.|||+++|+||+
T Consensus       154 -~~~~~Hav~iVGyg~~~~~~~wiv~NSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~  214 (216)
T d1cqda_         154 -NISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV  214 (216)
T ss_dssp             -CCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             -cccCCcceeeeccccccCCceEEEECCCCCccccCCEEEEEcCCCCCCCCCCccceeeeee
Confidence             22689999999999999999999999999999999999999964    6799999999996

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=100.00  E-value=3.1e-51  Score=369.35  Aligned_cols=210  Identities=33%  Similarity=0.657  Sum_probs=178.4

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      ||.+||||.  + .+|+|||.||||||||++++||++++++++..++||+|++++|.....+.+|+|+....++.++.+.
T Consensus         1 LP~~~Dwr~~~~itpV~dQg~cGsCwAfA~~~~~e~~~~~~~~~~~~lS~q~~~~c~~~~~~~~~~G~~~~~~~~~~~~~   80 (218)
T d1aeca_           1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINN   80 (218)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCBTTBCTTBCCCHHHHHHHHHHH
T ss_pred             CCCceeCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccccCCcccCCCcccccceeehhC
Confidence            566777774  3 5789999999999999999999999999999999999999999976667789999999999999999


Q ss_pred             C-CCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 G-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 G-i~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      | ++.|.+| ||......|........+...........+.+.||++|..+|||+++|.+..+.|.++.+|++..+. ..
T Consensus        81 g~v~~e~~y-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~~~~-~~  158 (218)
T d1aeca_          81 GGINTEENY-PYTAQDGECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPC-GT  158 (218)
T ss_dssp             TCBCBTTTS-CCCSSCCCCCHHHHHCCCBCCCEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCSC-CS
T ss_pred             ceecCcccc-CcccccCccceeccccccceecccccccccHHHHHHHHhhcCCceeEEEecchhhhcCCCCcccccc-cc
Confidence            6 8999999 9998777665444333344444444555678899999999999999999986667777888876543 22


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEe---cCCeeeecCCcEEeeC
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI---KDNNCGVMTAPTYVTM  351 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~---~~n~cgi~~~~~~~~~  351 (351)
                         .++|||+|||||++++++|||||||||++||++|||||+|   +.|.|||+++|+||+.
T Consensus       159 ---~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~Cgi~~~~~~~~~  217 (218)
T d1aeca_         159 ---AIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPVK  217 (218)
T ss_dssp             ---SCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSTTCGGGTTSSCEEEEC
T ss_pred             ---cCCceeEEEEEeccCCeEEEEEEcCCCCCcccCCEEEEEeCCCCCcccccCCcceeccc
Confidence               5799999999999999999999999999999999999999   4689999999999983

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.7e-50  Score=364.00  Aligned_cols=204  Identities=36%  Similarity=0.714  Sum_probs=175.8

Q ss_pred             CcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc-
Q psy3960         138 PVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH-  213 (351)
Q Consensus       138 P~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~-  213 (351)
                      |.+||+|.  + .||+|||.||||||||++++||++++++++...+||+|+|++|..  .+.+|.|+....++.++... 
T Consensus         2 P~~~DwR~~~~vtpV~dQg~cGsCwAfa~~~~le~~~~i~~~~~~~ls~q~l~~c~~--~~~~~~g~~~~~~~~~~~~~~   79 (215)
T d1me4a_           2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDK--TDSGCSGGLMNNAFEWIVQEN   79 (215)
T ss_dssp             CSEEEGGGTTCCCCCCBCTTSSCHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCT--TSCGGGCCCHHHHHHHHHHHS
T ss_pred             CCCeeCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhhc--CCCCCCCCcccccceeeeecc
Confidence            66677765  4 478999999999999999999999999999999999999999985  57788888888888777654 


Q ss_pred             --CCCCCCCCCCCCCCCCccccCC---CCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecC
Q psy3960         214 --GLPTQDDYGPYLGQDAYCHIAN---TTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDE  288 (351)
Q Consensus       214 --Gi~~e~~y~PY~~~~~~C~~~~---~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~  288 (351)
                        |++++++| ||...+..|....   ....+++..+..+. .+.+.||++|+++|||++++.+.  .|..|.++++...
T Consensus        80 ~~~~~~~~~y-py~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~i~~~gpv~~~~~~~--~~~~~~~~~~~~~  155 (215)
T d1me4a_          80 NGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVELP-QDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSC  155 (215)
T ss_dssp             TTEEEBTTTS-CCCCTTSCCCCCCCSSCCEEEECCEEEECC-SCHHHHHHHHHHHCCEEEEECCT--TGGGCCSSEECSC
T ss_pred             CCccccCccc-CccccccccccccccccccceEeeeeeecc-ccHHHHHHHHHhcCceeEEEEee--eecccccccccCC
Confidence              58999999 9998877666433   24456777787774 58999999999999999999886  5888889988654


Q ss_pred             CCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeeeecCCcEEeeC
Q psy3960         289 KCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM  351 (351)
Q Consensus       289 ~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi~~~~~~~~~  351 (351)
                      ..  .  ..+|||+|||||++++++|||||||||++||++|||||+|++|+|||+++++||+|
T Consensus       156 ~~--~--~~~Hav~IVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~g~n~cgI~~~~~~~~~  214 (215)
T d1me4a_         156 VS--E--QLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             CC--S--CCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSEEEEEC
T ss_pred             cc--c--cceeEEEEEEccccCCceEEEEEcCCCCCcccCCEEEEECCCCccccCCceeeEec
Confidence            32  2  57999999999999999999999999999999999999999999999999999986

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-51  Score=375.16  Aligned_cols=209  Identities=26%  Similarity=0.545  Sum_probs=169.3

Q ss_pred             cCcceeecC----C---CccccCCccCchhhhhhHHHHHHHHHHhcC--CceecCHHHHhhhcCCCCCCCCCCCchHHHH
Q psy3960         137 IPVRYEMKG----Y---NSLLDQSVCGSCWSFGTTGAVEGAYYMKHK--KLAVLSQQALIDCSWGYGNNGCDGGEDFRSY  207 (351)
Q Consensus       137 lP~~~d~r~----~---~~v~dQg~cGSCWAfA~~~alE~~~~~~~g--~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~  207 (351)
                      ||..||+|.    .   .||+|||.||||||||++++||++++++++  ....||+|+|++|.....+.||+||++..|+
T Consensus         2 lP~~~D~R~~w~~~~~vtpV~dQg~cGsCwAfA~~~~lEs~~~i~~~~~~~~~lS~~~l~~~~~~~~~~gc~gg~~~~a~   81 (254)
T d1gmya_           2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAW   81 (254)
T ss_dssp             CCSSEEHHHHSTTCGGGGCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTSSCCCBCHHHHHHHSGGGGBCGGGCBCHHHHH
T ss_pred             CCcCCcchhhcCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHCCCCccccchHHHHhhccccCCCCCCCCcHHHHH
Confidence            688888664    2   388999999999999999999999999986  4568999999999877778899999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCCC----------------CccccCCC------------Cc---eeeEeeEEE-ecCCCHHH
Q psy3960         208 QWIMKHGLPTQDDYGPYLGQD----------------AYCHIANT------------TA---TATMTGFVN-VTPNSEDA  255 (351)
Q Consensus       208 ~~l~~~Gi~~e~~y~PY~~~~----------------~~C~~~~~------------~~---~~~i~~y~~-v~~~~~~~  255 (351)
                      +++.+.|+++|+.| ++....                ..|.....            ..   ..+...+.. -...+++.
T Consensus        82 ~~~~~~G~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (254)
T d1gmya_          82 NFWTRKGLVSGGLY-ESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKD  160 (254)
T ss_dssp             HHHHHTCBCBCCST-TCCCSSSCCCSCCCBSSSCCSSCBCCSCCCCCCCCCSCCTTCCSCHHHHCBCBSCCEECCSCHHH
T ss_pred             HHHHHcCccccccc-cccccccccccccccccccCccCccccccCCccccccccCCcccceeeeeeeeeeeeccccHHHH
Confidence            99999999999999 654311                11111110            00   001111111 12346899


Q ss_pred             HHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEe
Q psy3960         256 LKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI  335 (351)
Q Consensus       256 ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~  335 (351)
                      ||++|+.+|||++++.+. ++|..|.+|++..+..   ...++|||+|||||++++.+|||||||||++||++|||||+|
T Consensus       161 ik~~l~~~gpv~~~~~~~-~~f~~y~~gi~~~~~~---~~~~~Hav~IVGyg~~~g~~ywIvkNSWG~~WGd~GYf~i~~  236 (254)
T d1gmya_         161 IMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQHVTG---EMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR  236 (254)
T ss_dssp             HHHHHHHHCCEEEEEEEE-GGGTTCCSSEECCCSC---CEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEEC
T ss_pred             HHHHHHHcCCEEEEEEee-chhhhccCCccccccc---cccccEEEEEEEEeccCCceEEEEEcCCCCCcCCCceEEEEc
Confidence            999999999999999998 7899999999966543   226799999999999999999999999999999999999999


Q ss_pred             cCCeeeecCCcEEee
Q psy3960         336 KDNNCGVMTAPTYVT  350 (351)
Q Consensus       336 ~~n~cgi~~~~~~~~  350 (351)
                      +.|+|||++++++++
T Consensus       237 ~~n~cgi~~~~~~~~  251 (254)
T d1gmya_         237 GQDHCGIESEVVAGI  251 (254)
T ss_dssp             SSCGGGTTTSCEECC
T ss_pred             CCCccCcCCceEecc
Confidence            999999999999975

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-50  Score=375.79  Aligned_cols=208  Identities=25%  Similarity=0.577  Sum_probs=177.6

Q ss_pred             CCCcCcceeecCC------CccccCC---ccCchhhhhhHHHHHHHHHHhcC---CceecCHHHHhhhcCCCCCCCCCCC
Q psy3960         134 KDAIPVRYEMKGY------NSLLDQS---VCGSCWSFGTTGAVEGAYYMKHK---KLAVLSQQALIDCSWGYGNNGCDGG  201 (351)
Q Consensus       134 ~~plP~~~d~r~~------~~v~dQg---~cGSCWAfA~~~alE~~~~~~~g---~~~~LS~q~l~dc~~~~~~~gC~GG  201 (351)
                      ...||.+||||..      .+|+|||   .||||||||++++||++++++++   ....||+|+|++|.   ...+|+||
T Consensus        31 ~~~LP~~~DwR~~~~~~~~tpvkdQG~~~~CGsCWAfAa~~~lE~~~~i~~~~~~~~~~lS~q~l~~~~---~~~~c~GG  107 (275)
T d1deua_          31 PADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCG---NAGSCEGG  107 (275)
T ss_dssp             GGGSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHS---SSEETBEE
T ss_pred             cccCCCccccCcCCCcCCCCCcccCCCCCCCcCHHHHHHHHHHHHHHHHHcCCcccccccchhheeccc---cccccCCc
Confidence            3468999999953      3788998   69999999999999999999875   34679999999997   45799999


Q ss_pred             chHHHHHHHHHcCCCCCCCCCCCCCCCCccc---------------cCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCE
Q psy3960         202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAYCH---------------IANTTATATMTGFVNVTPNSEDALKLALAKHGPV  266 (351)
Q Consensus       202 ~~~~a~~~l~~~Gi~~e~~y~PY~~~~~~C~---------------~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV  266 (351)
                      +...+++++.++|+++|++| ||...+..|.               .......+++.+|..+.  +.+.||++|+++|||
T Consensus       108 ~~~~a~~~~~~~G~~~e~~~-PY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~e~ik~~l~~~GPv  184 (275)
T d1deua_         108 NDLSVWDYAHQHGIPDETCN-NYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS--GREKMMAEIYANGPI  184 (275)
T ss_dssp             CHHHHHHHHHHTCBCBGGGS-CCCSSCCCCCHHHHSEEEEETTEEEECSSCCCBCEEEEEEEC--SHHHHHHHHHHHCCE
T ss_pred             ccccccchhhcccccccccc-cccccCCCcccccccCcccccceeeeccceeEEEeCceeecC--cHHHHHHHHHhCCCc
Confidence            99999999999999999999 9987765432               12223456777777664  578999999999999


Q ss_pred             EEEEEcCccccccccCcEEecCCCCCCCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeee-----
Q psy3960         267 SVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCG-----  341 (351)
Q Consensus       267 ~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cg-----  341 (351)
                      +++|.+. ++|++|++|||..+.+.   ..++|||+|||||++++++|||||||||++||++|||||+|+.|.||     
T Consensus       185 ~v~~~~~-~~f~~y~~Gi~~~~~~~---~~~~HAV~IVGyg~~~g~~ywivrNSWG~~WGd~Gyf~I~~~~~~~~~~~~~  260 (275)
T d1deua_         185 SCGIMAT-ERLANYTGGIYAEYQDT---TYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARY  260 (275)
T ss_dssp             EEEECCC-HHHHTCCSSEECBCCSC---CCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGT
T ss_pred             EEEEEec-cchhccCCCcccCcccc---ccCCeEEEEEEEeccCCcEEEEEECCCCCCcccCCEEEEECCCCCCCccccc
Confidence            9999998 88999999999765433   26899999999999999999999999999999999999999987776     


Q ss_pred             ---ecCCcEE--eeC
Q psy3960         342 ---VMTAPTY--VTM  351 (351)
Q Consensus       342 ---i~~~~~~--~~~  351 (351)
                         ||+.++|  |+|
T Consensus       261 ~~~ie~~~~~~~p~~  275 (275)
T d1deua_         261 NLAIEEHCTFGDPIV  275 (275)
T ss_dssp             BTTTTSCEEEEEECC
T ss_pred             cccccCccEecCCcC
Confidence               8999999  654

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=3.1e-49  Score=353.86  Aligned_cols=202  Identities=34%  Similarity=0.675  Sum_probs=171.9

Q ss_pred             cCcceeecCC---CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKGY---NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~~---~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      ||.+||+|..   .||+|||.||||||||++++||++++++++....||+|++++|..  ...+|+|+....|++++.++
T Consensus         1 LP~~~D~R~~~~v~pV~dQg~cGsCwAfa~~~~~e~~~~i~~~~~~~~S~q~~~~c~~--~~~g~~g~~~~~a~~~~~~~   78 (212)
T d1khqa_           1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDR--RSYGCNGGYPWSALQLVAQY   78 (212)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCBCHHHHHHHHHHT
T ss_pred             CCCCeeCCCCCCCCCcccCCcCchHHHHHHHHHHHHHHHHHcCCCcccCHHHhhcccc--ccCccccccccccccccccc
Confidence            5777787764   478999999999999999999999999999999999999999985  46788999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccccC-CCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 GLPTQDDYGPYLGQDAYCHIA-NTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 Gi~~e~~y~PY~~~~~~C~~~-~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      |+++|+.+ ||.+....|... .......+..+......+.+. ++++..+|||++++.+..+.|..+++|+|..+.+. 
T Consensus        79 g~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pv~~~~~~~~~~f~~~~~g~~~~~~~~-  155 (212)
T d1khqa_          79 GIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGA-LLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGN-  155 (212)
T ss_dssp             CBCBTTTS-CCCSSCCCCCTTTTCSCSBCCCEEEECCTTCHHH-HHHHHHHSCEEEEECCCSHHHHTCCSSEECCSCCS-
T ss_pred             cccccccC-CcccccCcccccccccceeeeeeeeeeccccHHH-HHHHHhcCCcEEEEEeecchhcccccCcccccccc-
Confidence            99999999 999887655443 345556667777666655555 45555669999999888789999999999765442 


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEee
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVT  350 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~  350 (351)
                         .++|||+|||||+    +|||||||||++||++|||||+|+.    |.|||+++++||+
T Consensus       156 ---~~~Hav~iVGyg~----~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~  210 (212)
T d1khqa_         156 ---KVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV  210 (212)
T ss_dssp             ---CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCTTCGGGTTSCCEEEE
T ss_pred             ---ccCeEEEecccCC----cEEEEEcCCCCCcccCCEEEEEcCCCCCCCcCCcccEeeeec
Confidence               5799999999985    5999999999999999999999976    5699999999997

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=3.4e-49  Score=357.10  Aligned_cols=208  Identities=41%  Similarity=0.790  Sum_probs=177.4

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      ||.+||||.  + .+|+|||.||||||||+++++|++++++++..++||+|+|++|+.. ...+|.||....|+.+++++
T Consensus         2 lP~~~Dwr~~~~itpV~dQG~cGsCwAfA~~~~~e~~~~~~~~~~~~~S~q~l~~c~~~-~~~~~~G~~~~~a~~~~~~~   80 (224)
T d1s4va_           2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD-QNQGCNGGLMDYAFEFIKQR   80 (224)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCS-SCCTTBCBCHHHHHHHHHHH
T ss_pred             CCCceeCCCCCCCCCCccCCcCchHHHHHHHHHHHHHHHHhcCCCCccchhhhhhcccc-ccccCCCCchhhHhhhHhhc
Confidence            688888876  3 4789999999999999999999999999999999999999999853 45678899999999999988


Q ss_pred             -CCCCCCCCCCCCCCCCccc-cCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCC
Q psy3960         214 -GLPTQDDYGPYLGQDAYCH-IANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN  291 (351)
Q Consensus       214 -Gi~~e~~y~PY~~~~~~C~-~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~  291 (351)
                       |++.|.++ ||...++.|. ........++..+......+.+.||++|.+ +||++++.+..++|..|..|+|... +.
T Consensus        81 g~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~-~pv~~~~~~~~~~~~~y~~g~~~~~-~~  157 (224)
T d1s4va_          81 GGITTEANY-PYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS-CG  157 (224)
T ss_dssp             TCBCBTTTS-CCCSSCCCCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-CC
T ss_pred             Cceeecccc-cccCcCCccccccccccceeecccccccCccHHHHHHHHhc-CCceEEEEecchhhhhccCCCccCc-cc
Confidence             57777777 8887766543 333455677888888888899999999988 7888888887788999999999643 22


Q ss_pred             CCCCCCCeEEEEEEEeee-CCeeEEEEEcCCCCCCCCCcEEEEEec----CCeeeecCCcEEeeC
Q psy3960         292 NSPDGLDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIK----DNNCGVMTAPTYVTM  351 (351)
Q Consensus       292 ~~~~~~~HaV~iVGyg~~-~g~~ywivkNSWG~~WG~~GY~~Is~~----~n~cgi~~~~~~~~~  351 (351)
                         ..++|||+|||||++ ++++|||||||||++||++|||||+|+    .|.|||+++++||+.
T Consensus       158 ---~~~~Hav~iVGy~~~~~g~~ywiikNSWG~~WG~~Gy~~i~~g~~~~~n~CgI~~~~~yp~~  219 (224)
T d1s4va_         158 ---TELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK  219 (224)
T ss_dssp             ---CCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             ---ccCCcceEEEecccccCCceEEEEEcCCCCccccCceEEEECCCCCCCCcCCccceeeeeec
Confidence               257999999999987 789999999999999999999999996    478999999999973

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=1.4e-48  Score=351.41  Aligned_cols=206  Identities=34%  Similarity=0.682  Sum_probs=172.6

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      ||.+||+|.  + .+|+|||.||||||||++++||++++++++..+.||+|+|++|..  ...+|.||....|++++.++
T Consensus         1 LP~s~Dwr~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~--~~~~~~G~~~~~a~~~~~~~   78 (215)
T d1iwda_           1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDT--ASHGCNGGWMNNAFQYIITN   78 (215)
T ss_dssp             CCSCEEGGGGTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCceeCCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccChhhheeccc--CCCCCCCcchhhHHHHHHhc
Confidence            577777774  3 588999999999999999999999999999999999999999985  56789999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCC
Q psy3960         214 GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNS  293 (351)
Q Consensus       214 Gi~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~  293 (351)
                      |.+.++.+.||......|... .....++.+|..+.....+. +++|...+||.+++.+..+.|..++.|+|..+.+ . 
T Consensus        79 g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pv~~~~~~~~~~~~~~~~g~~~~~~~-~-  154 (215)
T d1iwda_          79 GGIDTQQNYPYSAVQGSCKPY-RLRVVSINGFQRVTRNNESA-LQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCG-T-  154 (215)
T ss_dssp             TCBCBTTTSCCCSSCCCCCTT-CCCCBCCCEEEECCTTCHHH-HHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCC-C-
T ss_pred             CeeccccCCCccccccccccc-ccceeEeccccccCccHHHH-HHHHHhcCCccceeeecchhhhccccCccccccc-c-
Confidence            755544443888776666543 34557888998886655544 4555566999999999877788889999976543 2 


Q ss_pred             CCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEecC----CeeeecCCcEEee
Q psy3960         294 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVT  350 (351)
Q Consensus       294 ~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~~~----n~cgi~~~~~~~~  350 (351)
                        .++|||+|||||++++++|||||||||++||++|||||+|+.    |.|||++.|+||+
T Consensus       155 --~~~Hav~iVGyg~~~~~~ywiirNSWG~~WGd~Gy~~I~~~~~~~~~~CGi~~~~~~p~  213 (215)
T d1iwda_         155 --AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT  213 (215)
T ss_dssp             --CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             --cccceEEEEEeecCCCceEEEEECCCCcccccCCEEEEECCCCCCCCcCCccccceeec
Confidence              579999999999999999999999999999999999999975    5799999999997

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=1.8e-48  Score=348.83  Aligned_cols=200  Identities=38%  Similarity=0.726  Sum_probs=170.7

Q ss_pred             cCcceeecC--C-CccccCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHc
Q psy3960         137 IPVRYEMKG--Y-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKH  213 (351)
Q Consensus       137 lP~~~d~r~--~-~~v~dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~  213 (351)
                      ||.+||+|.  + .+|+|||.||||||||++++||++++++++..++||+|+|++|..  .+.+|.||....++.++...
T Consensus         1 LP~~~D~R~~~~vtpV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~--~~~~~~g~~~~~~~~~~~~~   78 (208)
T d1o0ea_           1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK--KNHGCLGGAFVFAYQYIINN   78 (208)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcccCccCCCCCCcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcCHHHhhhhcc--CCCCCCCccchhhhhhhhhc
Confidence            577888875  3 478999999999999999999999999999999999999999985  57799999999999999988


Q ss_pred             C-CCCCCCCCCCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCC
Q psy3960         214 G-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNN  292 (351)
Q Consensus       214 G-i~~e~~y~PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  292 (351)
                      | +++++++ ||...+..|....  ...++.+|..+...+...++.++. .|||++++......|..++.|+|..+... 
T Consensus        79 g~~~~~~~~-p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~~~~~~~~~~f~~~~~gi~~~~~~~-  153 (208)
T d1o0ea_          79 GGIDTQANY-PYKAVQGPCQAAS--KVVSIDGYNGVPFCNEXALKQAVA-VQPSTVAIDASSAQFQQYSSGIFSGPCGT-  153 (208)
T ss_dssp             TCBCBTTTS-CCCSSCCCCCCCC--CCBCCCEEEECCTTCHHHHHHHHH-HSCEEEEECCCSHHHHTCCSSEECCCCCS-
T ss_pred             CccccccCC-CCcccCCCccCcc--cccccccccccccchhhHHHHHhh-cCCceEEEEecchhhcccccCcccccccc-
Confidence            5 6777788 9999888887544  456778888887767666665555 47888888776689999999999754332 


Q ss_pred             CCCCCCeEEEEEEEeeeCCeeEEEEEcCCCCCCCCCcEEEEEe--cCCeeeecCCcEEee
Q psy3960         293 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI--KDNNCGVMTAPTYVT  350 (351)
Q Consensus       293 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~Is~--~~n~cgi~~~~~~~~  350 (351)
                         ..+|||+|||||+    +|||||||||++||++|||||+|  +.|.|||++.|+||+
T Consensus       154 ---~~~Hav~iVGy~~----~ywiirNSWG~~WGd~Gy~~I~~~~~~~~Cgi~~~~~~p~  206 (208)
T d1o0ea_         154 ---KLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT  206 (208)
T ss_dssp             ---CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEE
T ss_pred             ---cCCcEEEEEeeec----ceEEEECCCCCCcccCCeEEEEccCCCCccCccccceecc
Confidence               4699999999985    59999999999999999999999  457899999999997

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=99.76  E-value=2.8e-18  Score=168.28  Aligned_cols=186  Identities=22%  Similarity=0.224  Sum_probs=128.6

Q ss_pred             CccccCCccCchhhhhhHHHHHHHHHHhcC-CceecCHHHHhhh----------------cC-C---------CCCCCCC
Q psy3960         147 NSLLDQSVCGSCWSFGTTGAVEGAYYMKHK-KLAVLSQQALIDC----------------SW-G---------YGNNGCD  199 (351)
Q Consensus       147 ~~v~dQg~cGSCWAfA~~~alE~~~~~~~g-~~~~LS~q~l~dc----------------~~-~---------~~~~gC~  199 (351)
                      .+|.||++-|.||.||++..||..+.++.+ +.++||+.+|+--                .. +         .....++
T Consensus        67 ~~vtnQ~~SGrCW~FA~ln~lr~~~~~~~~~~~felSq~Yl~f~dklEKan~fL~~ii~~~~~~~~~R~v~~ll~~~~~D  146 (458)
T d3gcba_          67 TPVTNQKSSGRAWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTED  146 (458)
T ss_dssp             CSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHCTTCS
T ss_pred             CCcccCCCCcccHHHhChHHHHHHHHHHcCCCCeeecHHHHHHhhHHHHHHHHHHHHHHhcCCCcchHHHHHHhhcccCC
Confidence            478899999999999999999999988755 7799999876532                10 0         1134689


Q ss_pred             CCchHHHHHHHHHcCCCCCCCCCCCCC---CCC-----------------------------------------------
Q psy3960         200 GGEDFRSYQWIMKHGLPTQDDYGPYLG---QDA-----------------------------------------------  229 (351)
Q Consensus       200 GG~~~~a~~~l~~~Gi~~e~~y~PY~~---~~~-----------------------------------------------  229 (351)
                      ||....+...+.++|+++++.| |-+.   ...                                               
T Consensus       147 GG~w~m~~nli~KYG~VPk~~y-pet~~~s~~s~~mN~~L~~kLre~a~~Lr~~~~~~~~~~~~~~~~~~~~~~~vy~il  225 (458)
T d3gcba_         147 GGQYSMFLNLVKKYGLIPKDLY-GDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQREIFRLM  225 (458)
T ss_dssp             CBCHHHHHHHHHHHCCCBGGGS-CSCSHHHHBCHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHcCCCcHhhc-CCcccCccchHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999 8742   000                                               


Q ss_pred             -ccc--cC----CC---------------------------------------------CceeeE-----------eeEE
Q psy3960         230 -YCH--IA----NT---------------------------------------------TATATM-----------TGFV  246 (351)
Q Consensus       230 -~C~--~~----~~---------------------------------------------~~~~~i-----------~~y~  246 (351)
                       .|-  ++    ..                                             ...+.+           ..|.
T Consensus       226 ~~~LG~PP~~~~e~F~~~y~dkd~k~~~~~~TP~~F~~~~v~~~~~dyV~L~n~P~~py~k~y~v~~~~Nv~~G~~~~y~  305 (458)
T d3gcba_         226 SLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIKIDRLGNVLGGDAVIYL  305 (458)
T ss_dssp             HHHSCCCSSCTTSCEEEEEECTTSCEEEEEECHHHHHHHTSCCCTTSEEEEECCTTSCTTCEEEESSCCSSTTCCCEEEE
T ss_pred             HHHcCCCCCCCCcceeEEecccccceeecCCCCHHHHHHHhCccccceeeecccccCccceEEEecccccccCCcceEEe
Confidence             000  00    00                                             000111           1233


Q ss_pred             EecCCC-HHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCC-----------------CCCCCCCeEEEEEEEee
Q psy3960         247 NVTPNS-EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN-----------------NSPDGLDHAVLAVGYGE  308 (351)
Q Consensus       247 ~v~~~~-~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~-----------------~~~~~~~HaV~iVGyg~  308 (351)
                      +++-.. .+.++.+|.++.||.++.+|. + +...+.|+.....-.                 ......+|||+|+|++.
T Consensus       306 Nvp~d~lk~~~~~sL~~g~pVwfgcDV~-k-~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~~  383 (458)
T d3gcba_         306 NVDNETLSKLVVKRLQNNKAVFFGSHTP-K-FMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHV  383 (458)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCEEEEECTT-T-TEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEE
T ss_pred             ecCHHHHHHHHHHHHhcCCcEEEEeccc-c-cccccccccccccccccccCCCcccCHHHHHHhCCCCCCeeEEEEEEEE
Confidence            332111 244566677899999999998 5 455667777542110                 01125789999999985


Q ss_pred             e-CCe--eEEEEEcCCCCCCCCCcEEEEEe
Q psy3960         309 L-DGK--PYWQVKNSWSTYWGNQGYVLMSI  335 (351)
Q Consensus       309 ~-~g~--~ywivkNSWG~~WG~~GY~~Is~  335 (351)
                      + +|.  .+|+|+||||+.+|++||+.||-
T Consensus       384 D~~g~~~~~w~VeNSWG~~~g~~Gy~~msd  413 (458)
T d3gcba_         384 DETSKLPLRYRVENSWGKDSGKDGLYVMTQ  413 (458)
T ss_dssp             CTTTCSEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             cCCCCccceEEEEeccCCCCCCCceEEecH
Confidence            4 443  59999999999999999999986

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.2e-16  Score=156.04  Aligned_cols=186  Identities=20%  Similarity=0.249  Sum_probs=127.9

Q ss_pred             CccccCCccCchhhhhhHHHHHHHHHHhcC-CceecCHHHHhh----------------hc-C--C---------CCCCC
Q psy3960         147 NSLLDQSVCGSCWSFGTTGAVEGAYYMKHK-KLAVLSQQALID----------------CS-W--G---------YGNNG  197 (351)
Q Consensus       147 ~~v~dQg~cGSCWAfA~~~alE~~~~~~~g-~~~~LS~q~l~d----------------c~-~--~---------~~~~g  197 (351)
                      .++.||++.|.||.||+...|+..+.++.+ +.++||+.+++-                .. +  +         ..+..
T Consensus        61 ~~vtnQk~SGrCW~Fa~LN~lR~~~~k~~~~~~felSq~Yl~f~dklEKaN~fL~~ii~~~~~~~~~d~R~v~~ll~~p~  140 (453)
T d2cb5a_          61 KPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPA  140 (453)
T ss_dssp             SSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCTT
T ss_pred             CccccCCCCcccHHHhChHHHHHHHHHHcCCCCeehhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhhCCC
Confidence            467899999999999999999999988765 789999987752                11 1  1         01336


Q ss_pred             CCCCchHHHHHHHHHcCCCCCCCCCCCCCCCC------------------------------------------------
Q psy3960         198 CDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDA------------------------------------------------  229 (351)
Q Consensus       198 C~GG~~~~a~~~l~~~Gi~~e~~y~PY~~~~~------------------------------------------------  229 (351)
                      ++||....+...+.++|+++++.| |-+....                                                
T Consensus       141 ~DGGqw~m~~nli~KYGvVPk~~~-pet~~s~~s~~~n~~L~~kLr~~a~~Lr~~~~~~~~~~~l~~~~~~~~~~iy~iL  219 (453)
T d2cb5a_         141 NDGGQWDMLVNIVEKYGVIPKKCF-PESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVV  219 (453)
T ss_dssp             CSCBCHHHHHHHHHHHCCCBGGGS-CCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHcCcccHhhC-CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999 8542110                                                


Q ss_pred             -----c-------------------------------cc-----------cC------CCCceeeEe-----------eE
Q psy3960         230 -----Y-------------------------------CH-----------IA------NTTATATMT-----------GF  245 (351)
Q Consensus       230 -----~-------------------------------C~-----------~~------~~~~~~~i~-----------~y  245 (351)
                           .                               +.           ..      +-...+.+.           .|
T Consensus       220 ~~~LG~PP~~F~~~y~dk~k~~~~~~~~TP~~F~~~~v~~~~nlddyV~L~~dPr~~~py~k~y~ve~~~Nv~~G~~~~y  299 (453)
T d2cb5a_         220 CICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTVEYLSNMVGGRKTLY  299 (453)
T ss_dssp             HHHHCCCCSSEEEEEECTTSCEEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEEETTCCSSTTCCCCCE
T ss_pred             HHHcCCCCCeEEEEeecCCCceeecCCCCHHHHHHHhcccccCccceEEEEecCCCCCCCCceEEecccccccCCcceEE
Confidence                 0                               00           00      000111110           13


Q ss_pred             EEecCCC-HHHHHHHHHcCCCEEEEEEcCccccccccCcEEecC----------CCCC---------CCCCCCeEEEEEE
Q psy3960         246 VNVTPNS-EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDE----------KCNN---------SPDGLDHAVLAVG  305 (351)
Q Consensus       246 ~~v~~~~-~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~----------~~~~---------~~~~~~HaV~iVG  305 (351)
                      .+++-.. .+.++.+|.++-||.++.+|. ..| ..+.|+....          +...         .....+|||+|+|
T Consensus       300 ~Nvp~d~l~~~~~~sL~~g~~VwfgcDV~-k~~-~~k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltG  377 (453)
T d2cb5a_         300 NNQPIDFLKKMVAASIKDGEAVWFGCDVG-KHF-NSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTA  377 (453)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCEEEEECTT-TTE-ETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEE
T ss_pred             EecCHHHHHHHHHHHHhcCCcEEEEcccc-hhc-chhccccccccccccccccCCcccCCHHHHHHhcCcCCCceEEEEE
Confidence            3332111 244667777888999999998 554 4456665431          1100         1125689999999


Q ss_pred             Eee---eCCe-eEEEEEcCCCCCCCCCcEEEEEe
Q psy3960         306 YGE---LDGK-PYWQVKNSWSTYWGNQGYVLMSI  335 (351)
Q Consensus       306 yg~---~~g~-~ywivkNSWG~~WG~~GY~~Is~  335 (351)
                      ++.   .+|+ .+|+|+||||+.-|++||+.||.
T Consensus       378 v~l~dd~~G~~~~w~VENSWG~~~g~kGy~~Msd  411 (453)
T d2cb5a_         378 VSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTD  411 (453)
T ss_dssp             EEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             EecccccCCCEeEEEEEccccCcCCCCceEEecH
Confidence            984   4566 68999999999999999999986

>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain SspB
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.16  E-value=0.054  Score=43.85  Aligned_cols=139  Identities=10%  Similarity=0.061  Sum_probs=85.4

Q ss_pred             cCCccCchhhhhhHHHHHHHHHHhcCCceecCHHHHhhhcCC---CCCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCC
Q psy3960         151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWG---YGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQ  227 (351)
Q Consensus       151 dQg~cGSCWAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~---~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~PY~~~  227 (351)
                      .||.-|-|-+|+.++.|..+...     -..-.++++..-.+   ..+..-.|-++..-++|-...|-.           
T Consensus        26 tQg~nsWCAgytmaalLnat~nt-----~~Y~A~~iMR~lyPn~s~~~l~~~~~tp~qmI~Yg~SqGr~-----------   89 (183)
T d1pxva_          26 QQFDNSWAAGFSMAALLNATKNT-----DTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRD-----------   89 (183)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTC-----SCCCHHHHHHHHSTTSCTTTGGGCCBCHHHHHHHHHHTTCC-----------
T ss_pred             hcCcccHHHHHHHHHHHHhhccC-----CcCCHHHHHHHhCCCcccchhhhcCCCHHHHHHHHhccCCC-----------
Confidence            79999999999999988665521     12333444433211   000111234556666666655511           


Q ss_pred             CCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEE-EcCccccccccCcEEecCCCCCCCCCCCeEEEEEEE
Q psy3960         228 DAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI-DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGY  306 (351)
Q Consensus       228 ~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i-~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~iVGy  306 (351)
                                    +.-....+  ..+.+++.+..+-++++.- .+.                .......++|||.|||+
T Consensus        90 --------------~~~~~gm~--sy~~Vd~lt~~Nkgi~il~~~v~----------------~~~n~~hagHAmaV~Gn  137 (183)
T d1pxva_          90 --------------IHYQEGVP--SYNQVDQLTKDNVGIMILAQSVS----------------QNPNDPHLGHALAVVGN  137 (183)
T ss_dssp             --------------CEEEESCC--CHHHHHHHHHTTCCEEEEEECCC----------------SSTTSCCCEEEEEEEEE
T ss_pred             --------------chhhcCCC--cHHHHHHHhhcCCcEEEEeeeec----------------cCCCCcccceeEEEeee
Confidence                          11111222  4778999999988887632 221                00112268999999999


Q ss_pred             eeeCCeeEEEEEcCCCCCCCCCcEEEEEecCCeeee
Q psy3960         307 GELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV  342 (351)
Q Consensus       307 g~~~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi  342 (351)
                      ...++.+--|+-|-|     ++||.-++.+.|..-+
T Consensus       138 A~~nn~~~ii~WNPW-----D~g~~~qda~Sn~I~v  168 (183)
T d1pxva_         138 AKINDQEKLIYWNPW-----DTELSIQDADSSLLHL  168 (183)
T ss_dssp             EEETTEEEEEEECTT-----CSSCEEEETTCCEEEE
T ss_pred             eeEcCceEEEEeCCC-----cCCccccCCccCeEee
Confidence            999888888887777     5699988887775444

>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain StpA
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.60  E-value=0.33  Score=38.79  Aligned_cols=134  Identities=17%  Similarity=0.210  Sum_probs=87.8

Q ss_pred             cCCccCchhhhhhHHHHHHHHHHhc--------CCceecCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCC
Q psy3960         151 DQSVCGSCWSFGTTGAVEGAYYMKH--------KKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYG  222 (351)
Q Consensus       151 dQg~cGSCWAfA~~~alE~~~~~~~--------g~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~l~~~Gi~~e~~y~  222 (351)
                      .||.-|-|-+|+.++.|........        --...||.|.|-+|+          -.+..-++|-...|--+.  | 
T Consensus        16 tQg~nsWCAgytmaalLnat~nt~~y~A~~iMr~lyPn~s~~~l~~~~----------~tp~qmi~Yg~sqGr~~~--~-   82 (173)
T d1cv8a_          16 TQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTG----------LTPREMIYFGQTQGRSPQ--L-   82 (173)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHHCC----------CCHHHHHHHHHHTTCCCE--E-
T ss_pred             hcCcccHHHHHHHHHHHHHhhcCCCccHHHHHHHhCCCcchhhhhhcC----------CCHHHHHHHHHccCCChh--h-
Confidence            7999999999999998877652211        013578888888875          346777788776663211  0 


Q ss_pred             CCCCCCCccccCCCCceeeEeeEEEecCCCHHHHHHHHHcCCCEEEEEEcCccccccccCcEEecCCCCCCCCCCCeEEE
Q psy3960         223 PYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVL  302 (351)
Q Consensus       223 PY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~ik~aL~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~~~~~HaV~  302 (351)
                                            ....+  ..+++.+.+..+--+++-...-              ..|...  ..+|||.
T Consensus        83 ----------------------~n~m~--sy~~vd~lt~~Nkgi~il~~~v--------------es~~g~--h~~hAma  122 (173)
T d1cv8a_          83 ----------------------LNRMT--TYNEVDNLTKNNKGIAILGSRV--------------ESRNGM--HAGHAMA  122 (173)
T ss_dssp             ----------------------ESSCC--CHHHHHHHHHTTCCEEEEEEES--------------SCBTTB--CCEEEEE
T ss_pred             ----------------------hcCCC--chhhHHHHhhccCCcEeeeecc--------------cCCCCC--ccceeEE
Confidence                                  00122  3667777777754444322111              122221  6899999


Q ss_pred             EEEEeee-CCeeEEEEEcCCCCCCCCCcEEEEEecCCeeee
Q psy3960         303 AVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV  342 (351)
Q Consensus       303 iVGyg~~-~g~~ywivkNSWG~~WG~~GY~~Is~~~n~cgi  342 (351)
                      |||+... ++.+--+|-|-|     ++||.-++.+.|..-+
T Consensus       123 V~GnA~~nn~q~vi~~WNPW-----d~~~~~qda~Sn~I~v  158 (173)
T d1cv8a_         123 VVGNAKLNNGQEVIIIWNPW-----DNGFMTQDAKNNVIPV  158 (173)
T ss_dssp             EEEEEEETTSCEEEEEECTT-----CSSCEEEETTCCEEEC
T ss_pred             EeecceecCCceEEEEeCCC-----cCCccccCCccCeeee
Confidence            9999987 557888898998     4599988887775443