Psyllid ID: psy397

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MKTVLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITSCQEAEHKIDHSELVFDHICFSYASLYPLEDKIEIPPIILNRNVCWSLSMSKVLALSSYIKWCTSYHCKGSDWYLHIVSSLLDVESD
Secondary Structure (PSIPRED)
ccccccccEEEEEEcEEEcccccccEEEEEEEEccccccccHHHHHHHHHHHHcccccEEEEEccEEcccccEEEEEEEEEccHHHHHHcccccEEEccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccEEEccccEEEEEEHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEHHHcccHHHHHHcEEEEHcccccccccHHHHHHHHHHHHcccccEEEEEEEEEcccccccccEEEEEccHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccHHHEHHHEEEHccccccccccccccEEEccccEEcccHHHHHHHHHHHHHHHccccccccHEHHEHHcHcccccc
Coil and Loop (DISEMBL)
MKTVLSASTVTIKTRKYMTNRLLGRKQMVVDvlhpgkpsvkktDIREKLSKMFkskpenifafgfqtnfgggkstgFALIYDSIdlakkfepkyrlqrvsTKSLLVLIIATIGItscqeaehkidhselVFDHICFSyaslypledkieippiilnrnvCWSLSMSKVLALSSYIKWctsyhckgsdwYLHIVSSLLDVESD
Flexible Loop (DISEMBL)
mktvlsastvtiktrkymtnrllgrkqmvvdvlhpgkpsvkktdirEKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITSCQEAEHKIDHSELVFDHICFSYASLYPLEDKIEIPPIILNRNVCWSLSMSKVLALSSYIKWCTSYHCKGSDWYLHIVSSLLDVESD
Low Complexity Region (SEG)
MKTVLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITSCQEAEHKIDHSELVFDHICFSYASLYPLEDKIEIPPIILNRNVCWSLSMSKVLALSSYIKWCTSYHCKGSDWYLHIVSSLLDVESD
Disordered region (IsUnstruct)
*********VTIKTRKYMTNRLLGRKQMVVDVLH***********************ENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITSCQEAEHKIDHSELVFDHICFSYASLYPLEDKIEIPPIILNRNVCWSLSMSKVLALSSYIKWCTSYHCKGSDWYLHIVSSLL*****
Disordered Region (DISOPRED)
************KTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTK*****************************DHICFSYASLYPLEDKIEIPPIILNRNVCWSLSMSKVLALSSYIKWCTSYHCKGSDWYLHIVSSLLDV***
Disordered Region (DISEMBL)
MKTVLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITSCQEAEHKIDHSELVFDHICFSYASLYPLEDKIEIPPIILNRNVCWSLSMSKVLALSSYIKWCTSYHCKGSDWYLHIVSSLLDVESD
Disordered Region (DISPRO)
*******STVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITSCQEAEHKIDHSELVFDHICFSYASLYPLEDKIEIPPIILNRNVCWSLSMSKVLALSSYIKWCTSYHCKGSDWYLHIVSSLLD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKTVLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITSCQEAEHKIDHSELVFDHICFSYASLYPLEDKIEIPPIILNRNVCWSLSMSKVLALSSYIKWCTSYHCKGSDWYLHIVSSLLDVESD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q962Q6	132	40S ribosomal protein S24	N/A	N/A	0.465	0.712	0.734	5e-37
O42387	132	40S ribosomal protein S24	N/A	N/A	0.445	0.681	0.711	6e-34
Q9W6X9	132	40S ribosomal protein S24	N/A	N/A	0.435	0.666	0.727	7e-34
Q90YQ0	131	40S ribosomal protein S24	N/A	N/A	0.445	0.687	0.7	1e-33
O59865	134	40S ribosomal protein S24	yes	N/A	0.465	0.701	0.648	1e-30
O13784	134	40S ribosomal protein S24	no	N/A	0.465	0.701	0.606	5e-30
P14249	148	40S ribosomal protein S24	N/A	N/A	0.495	0.675	0.57	1e-28
Q8LC83	133	40S ribosomal protein S24	yes	N/A	0.465	0.706	0.589	3e-28
Q75K27	126	40S ribosomal protein S24	yes	N/A	0.475	0.761	0.567	1e-27
Q5RAQ8	131	40S ribosomal protein S24	no	N/A	0.445	0.687	0.722	2e-26

>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1

 Score =  154 bits (388), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 69/94 (73%), Positives = 83/94 (88%)

Query: 5  LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64
          ++  T TI+TRK+MTNRLL RKQMV DVLHPGKP+V KT+IREKL+KM+K  P+ +F FG
Sbjct: 1  MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 60

Query: 65 FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          F+TNFGGGKSTGFALIYD++DLAKKFEPK+RL R
Sbjct: 61 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLAR 94

Spodoptera frugiperda (taxid: 7108)

>sp|O42387|RS24_TAKRU 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1

 Score =  144 bits (362), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 80/90 (88%)

Query: 9  TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
          TVT++TRK+MTNRLL RKQMVVDVLHPGK +V KT+IREKL+KM+K+ P+ +F FGF+T 
Sbjct: 4  TVTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQ 63

Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          FGGGK+TGFA++YDS+D AKK EPK+RL R
Sbjct: 64 FGGGKTTGFAMVYDSLDYAKKNEPKHRLAR 93

Takifugu rubripes (taxid: 31033)

>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 79/88 (89%)

Query: 9  TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
          TVTI+TRK+MTNRLL RKQMVVDVLHPGK +V KT+IREKL+KM+K+ P+ +F FGF+T 
Sbjct: 4  TVTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQ 63

Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRL 96
          FGGGK+TGFA++YDS+D AKK EPK+RL
Sbjct: 64 FGGGKTTGFAMVYDSLDYAKKNEPKHRL 91

Oryzias latipes (taxid: 8090)

>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 80/90 (88%)

Query: 9  TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
          +VT++TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ +F FGF+T 
Sbjct: 4  SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFKTQ 63

Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          FGGGK+TGFA++YDS+D AKK EPKYRL R
Sbjct: 64 FGGGKTTGFAMVYDSLDYAKKNEPKYRLAR 93

Ictalurus punctatus (taxid: 7998)

>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps24b PE=2 SV=3

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 77/94 (81%)

Query: 7   ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQ 66
           +  VTI+TRK+MTNRLL RKQMVVD+LHPGK ++ K +IREKL++M+K+  E + AFG +
Sbjct: 2   SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLR 61

Query: 67  TNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVS 100
           T+FGGG+STGFALIYDS +  KKFEP YRL RV 
Sbjct: 62  THFGGGRSTGFALIYDSTESMKKFEPHYRLVRVG 95

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps24a PE=3 SV=3

 Score =  130 bits (328), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 75/94 (79%)

Query: 7   ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQ 66
           +  VTI+TRK+MTNRLL RKQMVVD+LHPGK ++ K D+REKL +M+K+    + AFG +
Sbjct: 2   SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLR 61

Query: 67  TNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVS 100
           T++GGG++TGFALIYD ++  KKFEP YRL RV 
Sbjct: 62  THYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVG 95

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P14249|RS24_MUCCL 40S ribosomal protein S24 OS=Mucor circinelloides f. lusitanicus GN=RPS24 PE=3 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 79/100 (79%)

Query: 1   MKTVLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENI 60
           M+T  + + VTI+TRK++TNRLL RKQMVVDV+HPG  +V K ++R K+ KM+K+  E +
Sbjct: 15  MRTKRADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKADKEVV 74

Query: 61  FAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVS 100
             FGF+T+FGGGK+TGFALIYD+++  K FEPK+RL R+ 
Sbjct: 75  SVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIG 114

Mucor circinelloides f. lusitanicus (taxid: 29924)

>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 77/95 (81%), Gaps = 1/95 (1%)

Query: 5  LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSK-PENIFAF 63
          ++   VTI+TR +MTNRLL RKQ V+DVLHPG+ +V K +++EKL++M++ K P  IF F
Sbjct: 1  MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 64 GFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
           F+T+FGGGKS+G+ LIYD+++ AKKFEPKYRL R
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIR 95

Arabidopsis thaliana (taxid: 3702)

>sp|Q75K27|RS24_DICDI 40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 76/97 (78%), Gaps = 1/97 (1%)

Query: 5   LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFK-SKPENIFAF 63
           +  + V ++TRK +TNRLL RKQ VV+V+HPGK +V K D++  ++K+ K + PE IF F
Sbjct: 1   MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60

Query: 64  GFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVS 100
           GF+T+FGGGKSTGF LIYD++++AKK+EPKYRL R  
Sbjct: 61  GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAG 97

Dictyostelium discoideum (taxid: 44689)

>sp|Q5RAQ8|RS24_PONAB 40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query: 9  TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
          TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct: 4  TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

Required for processing of pre-rRNA and maturation of 40S ribosomal subunits.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
110671446	133	putative ribosomal protein S24e [Diaphor	0.465	0.706	0.978	1e-47
69608485	133	ribosomal protein S24e [Agriotes lineatu	0.460	0.699	0.763	4e-37
264667363	132	ribosomal protein S24 [Chrysomela tremul	0.465	0.712	0.755	1e-36
332374864	132	unknown [Dendroctonus ponderosae]	0.465	0.712	0.765	1e-36
69608490	132	ribosomal protein S24e [Biphyllus lunatu	0.465	0.712	0.765	1e-36
193652533	135	PREDICTED: 40S ribosomal protein S24-lik	0.470	0.703	0.789	1e-36
326534102	135	predicted protein [Hordeum vulgare subsp	0.470	0.703	0.789	1e-36
307184786	137	40S ribosomal protein S24 [Camponotus fl	0.465	0.686	0.744	2e-36
307196557	183	40S ribosomal protein S24 [Harpegnathos	0.465	0.513	0.744	4e-36
332022329	156	40S ribosomal protein S24 [Acromyrmex ec	0.460	0.596	0.752	4e-36

>gi|110671446|gb|ABG81974.1| putative ribosomal protein S24e [Diaphorina citri]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/94 (97%), Positives = 93/94 (98%)

Query: 5  LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64
          +SASTVTIKTRKYMTNRLLGRKQMVVDVLHPGK SVKKTDIREKLSKMFKSKPENIFAFG
Sbjct: 1  MSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKTSVKKTDIREKLSKMFKSKPENIFAFG 60

Query: 65 FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR
Sbjct: 61 FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 94

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|69608485|emb|CAJ01863.1| ribosomal protein S24e [Agriotes lineatus]

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 83/93 (89%)

Query: 6  SASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGF 65
            +T TI+TRK+MTNRLL RKQMVVDVLHPG+PSVKKT+IREKL+KM+K  P+ +F FGF
Sbjct: 3  EGTTATIRTRKFMTNRLLARKQMVVDVLHPGQPSVKKTEIREKLAKMYKVTPDVVFVFGF 62

Query: 66 QTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
           TNFGGGKSTGFALIYD++D AKKFEP+YRLQR
Sbjct: 63 HTNFGGGKSTGFALIYDTLDFAKKFEPRYRLQR 95

Source: Agriotes lineatus

Species: Agriotes lineatus

Genus: Agriotes

Family: Elateridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667363|gb|ACY71267.1| ribosomal protein S24 [Chrysomela tremula]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 84/94 (89%)

Query: 5  LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64
          ++  T TI+TRK+MTNRLL RKQMVVDVLHPG+PSVKK+DIREKLSKM+K  P+ +F FG
Sbjct: 1  MTEGTATIRTRKFMTNRLLARKQMVVDVLHPGQPSVKKSDIREKLSKMYKVTPDVVFVFG 60

Query: 65 FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          F+TNFGGGKSTGFALIYD++D AKKFEPK+RL R
Sbjct: 61 FRTNFGGGKSTGFALIYDTLDFAKKFEPKHRLAR 94

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374864|gb|AEE62573.1| unknown [Dendroctonus ponderosae]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/94 (76%), Positives = 84/94 (89%)

Query: 5  LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64
          ++  T TI+TRK+MTNRLL RKQMVVDVLHPG+PSVKKTDIREKL+KM+K  P+ IF FG
Sbjct: 1  MTEGTATIRTRKFMTNRLLCRKQMVVDVLHPGQPSVKKTDIREKLAKMYKVTPDVIFVFG 60

Query: 65 FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          F+TNFGGGKSTGF LIYD++D AKKFEPK+RLQR
Sbjct: 61 FRTNFGGGKSTGFGLIYDTLDFAKKFEPKHRLQR 94

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|69608490|emb|CAJ01864.1| ribosomal protein S24e [Biphyllus lunatus]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/94 (76%), Positives = 85/94 (90%)

Query: 5  LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64
          ++  T TI+TRK+MTNRLL RKQMVVDVLHPG+PSVKKTDIREKL+KM+K  P+ +FAFG
Sbjct: 1  MTEGTATIRTRKFMTNRLLCRKQMVVDVLHPGQPSVKKTDIREKLAKMYKVTPDVVFAFG 60

Query: 65 FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          F+TNFGGGKSTGFALIYD++D AKKFEPK+RL R
Sbjct: 61 FRTNFGGGKSTGFALIYDTLDFAKKFEPKHRLGR 94

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193652533|ref|XP_001943982.1| PREDICTED: 40S ribosomal protein S24-like [Acyrthosiphon pisum]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 84/95 (88%)

Query: 4  VLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAF 63
          V + ST TI+TRK+MTNRLL RKQMVVDV+HPGKPS KKTDIREKL+KMFK  P+ +F F
Sbjct: 2  VANTSTATIRTRKFMTNRLLCRKQMVVDVMHPGKPSPKKTDIREKLAKMFKVLPDVVFVF 61

Query: 64 GFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          GFQT FGGGKSTGFALIYD++D AKKFEPKYRLQR
Sbjct: 62 GFQTCFGGGKSTGFALIYDTLDHAKKFEPKYRLQR 96

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326534102|dbj|BAJ89401.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 84/95 (88%)

Query: 4  VLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAF 63
          V + ST TI+TRK+MTNRLL RKQMVVDV+HPGKPS KKTDIREKL+KMFK  P+ +F F
Sbjct: 2  VANTSTATIRTRKFMTNRLLCRKQMVVDVMHPGKPSPKKTDIREKLAKMFKVLPDVVFVF 61

Query: 64 GFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          GFQT FGGGKSTGFALIYD++D AKKFEPKYRLQR
Sbjct: 62 GFQTCFGGGKSTGFALIYDTLDHAKKFEPKYRLQR 96

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307184786|gb|EFN71100.1| 40S ribosomal protein S24 [Camponotus floridanus]

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 84/94 (89%)

Query: 5  LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64
          ++  T TI+TRK+MTNRLL RKQMVVDV+HPG+PSV+KT+IREKL+KM+K  P+ +F FG
Sbjct: 1  MTEGTATIRTRKFMTNRLLCRKQMVVDVIHPGQPSVRKTEIREKLAKMYKVTPDVVFVFG 60

Query: 65 FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          FQTNFGGGKSTGFALIYD++D AKKFEPKYRL R
Sbjct: 61 FQTNFGGGKSTGFALIYDTLDFAKKFEPKYRLAR 94

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196557|gb|EFN78087.1| 40S ribosomal protein S24 [Harpegnathos saltator]

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 84/94 (89%)

Query: 5  LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64
          ++  T TI+TRK+MTNRLL RKQMVVDV+HPG+PSV+KT+IREKL+KM+K  P+ +F FG
Sbjct: 1  MTEGTATIRTRKFMTNRLLCRKQMVVDVIHPGQPSVRKTEIREKLAKMYKVTPDVVFVFG 60

Query: 65 FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          FQTNFGGGKSTGFALIYD++D AKKFEPKYRL R
Sbjct: 61 FQTNFGGGKSTGFALIYDTLDYAKKFEPKYRLAR 94

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022329|gb|EGI62641.1| 40S ribosomal protein S24 [Acromyrmex echinatior]

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 83/93 (89%)

Query: 6  SASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGF 65
          +  T TI+TRK+MTNRLL RKQMVVDV+HPG+PSV+KT+IREKL+KM+K  P+ +F FGF
Sbjct: 1  TEGTATIRTRKFMTNRLLCRKQMVVDVIHPGQPSVRKTEIREKLAKMYKVTPDVVFVFGF 60

Query: 66 QTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          QTNFGGGKSTGFALIYD++D AKKFEPKYRL R
Sbjct: 61 QTNFGGGKSTGFALIYDTLDFAKKFEPKYRLAR 93

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
FB|FBgn0261596	131	RpS24 "Ribosomal protein S24"	0.465	0.717	0.723	1.5e-33
ZFIN|ZDB-GENE-040109-5	132	rps24 "ribosomal protein S24"	0.445	0.681	0.722	8.5e-33
UNIPROTKB|F1NF89	130	RPS24 "40S ribosomal protein S	0.445	0.692	0.722	6e-32
UNIPROTKB|Q56JU9	131	RPS24 "40S ribosomal protein S	0.445	0.687	0.722	6e-32
UNIPROTKB|E2QWF8	132	RPS24 "40S ribosomal protein S	0.445	0.681	0.722	6e-32
UNIPROTKB|F1PH35	132	RPS24 "40S ribosomal protein S	0.445	0.681	0.722	6e-32
UNIPROTKB|H9GWG6	132	RPS24 "40S ribosomal protein S	0.445	0.681	0.722	6e-32
UNIPROTKB|J9NRJ3	130	RPS24 "40S ribosomal protein S	0.445	0.692	0.722	6e-32
UNIPROTKB|J9P0U8	132	RPS24 "40S ribosomal protein S	0.445	0.681	0.722	6e-32
UNIPROTKB|L7N0B1	132	RPS24 "Uncharacterized protein	0.445	0.681	0.722	6e-32

FB|FBgn0261596 RpS24 "Ribosomal protein S24" [Drosophila melanogaster (taxid:7227)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 68/94 (72%), Positives = 81/94 (86%)

Query:     5 LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64
             +S +T TI+TRK+MTNRLL RKQMV DVLHPG  SV KT+IREKL+ M+K  P+ +FAFG
Sbjct:     1 MSGTTATIRTRKFMTNRLLARKQMVCDVLHPGLSSVNKTEIREKLAAMYKVTPDVVFAFG 60

Query:    65 FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
             F+TNFGGG+STGFALIYD++D AKKFEPKYRL R
Sbjct:    61 FRTNFGGGRSTGFALIYDTLDFAKKFEPKYRLAR 94

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0006412 "translation" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005840 "ribosome" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

ZFIN|ZDB-GENE-040109-5 rps24 "ribosomal protein S24" [Danio rerio (taxid:7955)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query:     9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
             TVT++TRK+MTNRLL RKQM+VDVLHPGK +V KT+IREKL+KM+K+ P+ +F FGF+T 
Sbjct:     4 TVTVRTRKFMTNRLLQRKQMIVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFKTQ 63

Query:    69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
             FGGGK+TGF +IYDS+D AKK EPKYRLQR
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKYRLQR 93

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

GO:0005730 "nucleolus" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1NF89 RPS24 "40S ribosomal protein S24" [Gallus gallus (taxid:9031)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query:     9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
             TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct:     4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query:    69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
             FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q56JU9 RPS24 "40S ribosomal protein S24" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query:     9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
             TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct:     4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query:    69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
             FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QWF8 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query:     9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
             TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct:     4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query:    69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
             FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PH35 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query:     9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
             TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct:     4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query:    69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
             FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|H9GWG6 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query:     9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
             TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct:     4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query:    69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
             FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9NRJ3 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query:     9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
             TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct:     4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query:    69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
             FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P0U8 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query:     9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
             TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct:     4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query:    69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
             FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|L7N0B1 RPS24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query:     9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
             TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct:     4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query:    69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
             FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56JU9	RS24_BOVIN	No assigned EC number	0.7222	0.4455	0.6870	yes	N/A
O59865	RS24B_SCHPO	No assigned EC number	0.6489	0.4653	0.7014	yes	N/A
Q8LC83	RS242_ARATH	No assigned EC number	0.5894	0.4653	0.7067	yes	N/A
Q9SS17	RS241_ARATH	No assigned EC number	0.6105	0.4653	0.7067	yes	N/A
Q75K27	RS24_DICDI	No assigned EC number	0.5670	0.4752	0.7619	yes	N/A
P62849	RS24_MOUSE	No assigned EC number	0.7222	0.4455	0.6766	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
PTZ00071	132	PTZ00071, PTZ00071, 40S ribosomal protein S24; Pro	2e-46
COG2004	107	COG2004, RPS24A, Ribosomal protein S24E [Translati	2e-35
pfam01282	83	pfam01282, Ribosomal_S24e, Ribosomal protein S24e	4e-35
PRK01178	99	PRK01178, rps24e, 30S ribosomal protein S24e; Revi	3e-18

>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional

 Score =  148 bits (376), Expect = 2e-46
 Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 1/94 (1%)

Query: 7  ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSK-PENIFAFGF 65
           +  T++TRK++ N LL RKQ VV+VLHPGK +V K DI+EKL+K +K      I  FGF
Sbjct: 3  KAEFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGF 62

Query: 66 QTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRV 99
          +T FGGGK+TGF LIYD++   KKFEPKYRL R+
Sbjct: 63 KTKFGGGKTTGFGLIYDNLAALKKFEPKYRLIRL 96

Length = 132

>gnl|CDD|224915 COG2004, RPS24A, Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

 Score =  120 bits (302), Expect = 2e-35
 Identities = 37/90 (41%), Positives = 55/90 (61%)

Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
          + IK  +   N LL RK++V  V H G P+  + ++REKL+ M  +  E +     +T F
Sbjct: 2  MEIKILEKRDNPLLKRKEIVFVVYHEGSPTPSRKEVREKLAAMLGADKELVVVDYIKTEF 61

Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQRV 99
          G G+S G+A IYDS++ AKK EP+Y L+R 
Sbjct: 62 GKGRSKGYAKIYDSVERAKKIEPEYILERN 91

Length = 107

>gnl|CDD|216409 pfam01282, Ribosomal_S24e, Ribosomal protein S24e

 Score =  118 bits (298), Expect = 4e-35
 Identities = 44/71 (61%), Positives = 57/71 (80%)

Query: 28 MVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLA 87
          MV +VLHPG+ +  + ++REKL+KM K   + +  FGF+T FGGGKSTGFALIYDS++ A
Sbjct: 1  MVFEVLHPGRATPSRKEVREKLAKMLKVDKDLVVVFGFKTEFGGGKSTGFALIYDSLEAA 60

Query: 88 KKFEPKYRLQR 98
          KKFEPKYRL+R
Sbjct: 61 KKFEPKYRLER 71

Length = 83

>gnl|CDD|179239 PRK01178, rps24e, 30S ribosomal protein S24e; Reviewed

 Score = 75.7 bits (187), Expect = 3e-18
 Identities = 31/79 (39%), Positives = 49/79 (62%)

Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
          N LLGR+++  +V H G  +  + D+R+KL+ M  +  E +     +T +G GKS G+A 
Sbjct: 11 NPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAK 70

Query: 80 IYDSIDLAKKFEPKYRLQR 98
          +YD  + A+K EPKY L+R
Sbjct: 71 VYDDKERARKIEPKYILER 89

Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PTZ00071	132	40S ribosomal protein S24; Provisional	100.0
KOG3424|consensus	132		100.0
PRK01178	99	rps24e 30S ribosomal protein S24e; Reviewed	100.0
COG2004	107	RPS24A Ribosomal protein S24E [Translation, riboso	100.0
PF01282	84	Ribosomal_S24e: Ribosomal protein S24e; InterPro:	99.98

>PTZ00071 40S ribosomal protein S24; Provisional

Probab=100.00  E-value=1e-41  Score=274.72  Aligned_cols=98  Identities=55%  Similarity=0.939  Sum_probs=95.0

Q ss_pred             CCeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhC-CCCCeEEEeceeecCCCCEEEEEEEEeCCHH
Q psy397            7 ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFK-SKPENIFAFGFQTNFGGGKSTGFALIYDSID   85 (202)
Q Consensus         7 ~~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamln-vd~dlVVVfg~kT~FGgGkStGfA~IYDS~E   85 (202)
                      .++|||+|++|++||||+|||++|+|.|||+|||||+||+++||+||+ +|+++|||++|+|+||+|+|+|||+||||.|
T Consensus         3 ~~~~~ir~rk~~~NpLL~RkE~~~~v~Hpg~~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~IYds~e   82 (132)
T PTZ00071          3 KAEFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIYDNLA   82 (132)
T ss_pred             CccEEEEEeeeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEEECCHH
Confidence            346999999999999999999999999999999999999999999999 7999999999999999999999999999999


Q ss_pred             HHHhcCcceeeeeCCccce
Q psy397           86 LAKKFEPKYRLQRVSTKSL  104 (202)
Q Consensus        86 ~aKK~EPKyrL~Rngl~ek  104 (202)
                      +|++|||+|+|+|||+.++
T Consensus        83 ~~kk~Epk~~l~Rngl~~~  101 (132)
T PTZ00071         83 ALKKFEPKYRLIRLGLIKK  101 (132)
T ss_pred             HHHhhCchheeeecCcccc
Confidence            9999999999999999865

>KOG3424|consensus

Probab=100.00  E-value=2.9e-42  Score=276.91  Aligned_cols=101  Identities=67%  Similarity=1.107  Sum_probs=98.7

Q ss_pred             cCCeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHH
Q psy397            6 SASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSID   85 (202)
Q Consensus         6 ~~~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E   85 (202)
                      ++++|||||||||+|+||+|+|++++|+|||+||||++|||||||+||+++||+|+||+|+|+||+|+|+|||+||||.|
T Consensus         1 ~~~~vtirtrk~~tNrLL~RKqmvvdvlHPG~a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalIYdsve   80 (132)
T KOG3424|consen    1 MSDAVTIRTRKFMTNRLLSRKQMVVDVLHPGKANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALIYDSVE   80 (132)
T ss_pred             CCccEEEehhhhhhhhhhhhhheeEEEecCCCCCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeeeeehHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcceeeeeCCccceee
Q psy397           86 LAKKFEPKYRLQRVSTKSLLV  106 (202)
Q Consensus        86 ~aKK~EPKyrL~Rngl~ek~~  106 (202)
                      .+++|||+|||+|+|+.|+..
T Consensus        81 ~akkfEpkyrl~r~gl~e~~k  101 (132)
T KOG3424|consen   81 YAKKFEPKYRLVRLGLAEKIK  101 (132)
T ss_pred             HHHhcCcceeeeecccccccc
Confidence            999999999999999999873

>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed

Probab=100.00  E-value=8.1e-40  Score=252.04  Aligned_cols=93  Identities=35%  Similarity=0.596  Sum_probs=90.1

Q ss_pred             EEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhcC
Q psy397           12 IKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFE   91 (202)
Q Consensus        12 IrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~E   91 (202)
                      +.+-++++||||+|||++|+|.|||+|||||+||++|||+|||+++++|||++|+|+||+|+|+|||+||||.|+|++||
T Consensus         3 i~I~~~~~N~LL~Rke~~~~v~h~g~~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~IYds~e~~kk~E   82 (99)
T PRK01178          3 IKIISDKENPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKVYDDKERARKIE   82 (99)
T ss_pred             EEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEEECCHHHHHhhC
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeeCCccce
Q psy397           92 PKYRLQRVSTKSL  104 (202)
Q Consensus        92 PKyrL~Rngl~ek  104 (202)
                      |+|+|+|||+.++
T Consensus        83 pk~~l~Rn~~~~~   95 (99)
T PRK01178         83 PKYILERNKIEEE   95 (99)
T ss_pred             chheeeecCcccc
Confidence            9999999999764

>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.4e-38  Score=244.87  Aligned_cols=92  Identities=40%  Similarity=0.633  Sum_probs=90.8

Q ss_pred             EEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q psy397           10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKK   89 (202)
Q Consensus        10 vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK   89 (202)
                      ++|+|+++++||||+|||+.|+|.|||++||||+|||+|||++||+|+++|+|++++|+||+|+|+|||+||||.+.|++
T Consensus         2 ~ei~I~~~r~NpLL~RkEi~~~v~h~g~~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akIY~s~e~~~~   81 (107)
T COG2004           2 MEIKILEKRDNPLLKRKEIVFVVYHEGSPTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKIYDSVERAKK   81 (107)
T ss_pred             ceEEeehcccCccccceEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEEECCHHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceeeeeCCc
Q psy397           90 FEPKYRLQRVST  101 (202)
Q Consensus        90 ~EPKyrL~Rngl  101 (202)
                      |||+|+|.||+.
T Consensus        82 iEp~yiL~Rn~~   93 (107)
T COG2004          82 IEPEYILERNGG   93 (107)
T ss_pred             cCcceEEEeccc
Confidence            999999999987

>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.98  E-value=1.1e-32  Score=205.66  Aligned_cols=78  Identities=56%  Similarity=0.954  Sum_probs=72.3

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhcCcceeeeeCCcccee
Q psy397           28 MVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLL  105 (202)
Q Consensus        28 v~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~EPKyrL~Rngl~ek~  105 (202)
                      |+|+|.|||+|||||+||+++||+|||+|+++|||++|+|+||+|+|+|||+||||.|+|+++||+|+|+||++.++.
T Consensus         1 ~~~~v~h~g~~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~IYd~~e~~kk~Ep~~~l~R~~~~e~~   78 (84)
T PF01282_consen    1 MVFEVLHPGKPTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKIYDSAEALKKFEPKYRLKRNGLEEKK   78 (84)
T ss_dssp             EEEEEE-SSSSS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEEESSHHHHHHHSTHHHHHHTTSSSS-
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEEeCCHHHHHHhCcHHHhHhcCccccc
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999988763

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
3iz6_U	138	Localization Of The Small Subunit Ribosomal Protein		3e-30
3izb_U	135	Localization Of The Small Subunit Ribosomal Protein		5e-26
2xzm_P	149	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-22
3j20_V	99	Promiscuous Behavior Of Proteins In Archaeal Riboso		7e-09
2v94_A	107	Crystal Structure Of P. Abyssi Rps24 Length = 107		1e-07
3zey_T	137	High-resolution Cryo-electron Microscopy Structure		3e-06
1xn9_A	101	Solution Structure Of Methanosarcina Mazei Protein		2e-04

>pdb|3IZ6|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 138

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 1  MKTVLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPEN- 59
          M    +A  VT++TRK+MTNRLL RKQ V++VLHPG+ +V K D++EKL+K+++ K  N 
Sbjct: 1  MADTKTAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNC 60
Query: 60 IFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          IF F F+T+FGGGKSTGF LIYD++D AKK+EPKYRL R
Sbjct: 61 IFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99

>pdb|3IZB|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 135

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 82/125 (65%), Gaps = 7/125 (5%)
Query: 7   ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQ 66
           +  VTI+TRK ++N LL RKQ VVDVLHP + +V K ++REKL++++K++ + +  FGF+
Sbjct: 2   SDAVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFR 61
Query: 67  TNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITSCQEAEHKIDH 126
           T FGGGKS GF L+Y+S+  AKKFEP YRL R         +   +   S Q+ + K + 
Sbjct: 62  TQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYG-------LAEKVEKASRQQRKQKKNR 114
Query: 127 SELVF 131
            + +F
Sbjct: 115 DKKIF 119

>pdb|2XZM|P Chain P, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 149

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 63/91 (69%)
Query: 9  TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
          T+ I+T+K + N LL R+Q+ +DVLHP  P+  K  IRE+L+K  K    N+  +GF T 
Sbjct: 2  TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQ 61
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQRV 99
          +GGGKSTGFAL+YD+     K+EP YRL++V
Sbjct: 62 YGGGKSTGFALVYDNQQYLLKYEPNYRLRKV 92

>pdb|3J20|V Chain V, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 99

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
          + I+ ++   N+L+GRK++  ++ HPG+P+  + D++ KL  M    PE       ++ F
Sbjct: 1  MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYF 60
Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          G   S G+A  YDS +     EP+Y L R
Sbjct: 61 GSYISKGYAKAYDSKERMLYIEPEYILIR 89

>pdb|2V94|A Chain A, Crystal Structure Of P. Abyssi Rps24 Length = 107

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 12 IKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGG 71
          IK  +   N+L+GRK++  ++ HPG+P+  + D++ KL       PE       ++ FG 
Sbjct: 11 IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAXLDLNPETTVIQYIRSYFGS 70
Query: 72 GKSTGFALIYDSIDLAKKFEPKYRLQR 98
           KS G+A  Y   D     EP+Y L R
Sbjct: 71 YKSKGYAKYYYDKDRXLYIEPEYILIR 97

>pdb|3ZEY|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 137

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 2/95 (2%)
Query: 8   STVTIKTRKYMTNRLLGRKQMVVDVLHPG-KPSVKKTDIREKLSKMFKSKPEN-IFAFGF 65
           + VT++T ++  N+LL RKQ VV+V HPG   +V    IR +L+ ++K   EN I  FGF
Sbjct: 8   AEVTVRTSQFKVNKLLNRKQFVVEVNHPGWCGTVPAKLIRNRLASLYKVADENQISVFGF 67
Query: 66  QTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVS 100
           +T FGGGK+TGF LIYD +   K+ EP YR  R+ 
Sbjct: 68  KTKFGGGKTTGFGLIYDDLAAMKRIEPNYRKARLG 102

>pdb|1XN9|A Chain A, Solution Structure Of Methanosarcina Mazei Protein Rps24e: The Northeast Structural Genomics Consortium Target Mar11 Length = 101

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGK-PSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
          + IK  K   N LL R+++   V + G  PS  + D+R KL+ M  +  E +     +T 
Sbjct: 1  MDIKIIKDKKNPLLNRRELDFIVKYEGSTPS--RNDVRNKLAAMLNAPLELLVIQRIKTE 58
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          +G  +S G+A +Y+  D  K+ E +Y L+R
Sbjct: 59 YGMQESKGYAKLYEDADRMKQVEQEYVLKR 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	4e-45
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	8e-44
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	1e-42
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	1e-41
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	5e-41
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	4e-40
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	2e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y Length = 135

 Score =  145 bits (367), Expect = 4e-45
 Identities = 51/92 (55%), Positives = 71/92 (77%)

Query: 7  ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQ 66
          +  VTI+TRK ++N LL RKQ VVDVLHP + +V K ++REKL++++K++ + +  FGF+
Sbjct: 2  SDAVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFR 61

Query: 67 TNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          T FGGGKS GF L+Y+S+  AKKFEP YRL R
Sbjct: 62 TQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVR 93

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3 Length = 107

 Score =  141 bits (356), Expect = 8e-44
 Identities = 30/91 (32%), Positives = 47/91 (51%)

Query: 8  STVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQT 67
            + IK  +   N+L+GRK++  ++ HPG+P+  + D++ KL  M    PE       ++
Sbjct: 7  LEMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRS 66

Query: 68 NFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
           FG  KS G+A  Y   D     EP+Y L R
Sbjct: 67 YFGSYKSKGYAKYYYDKDRMLYIEPEYILIR 97

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P Length = 149

 Score =  139 bits (351), Expect = 1e-42
 Identities = 44/90 (48%), Positives = 62/90 (68%)

Query: 9  TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
          T+ I+T+K + N LL R+Q+ +DVLHP  P+  K  IRE+L+K  K    N+  +GF T 
Sbjct: 2  TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQ 61

Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          +GGGKSTGFAL+YD+     K+EP YRL++
Sbjct: 62 YGGGKSTGFALVYDNQQYLLKYEPNYRLRK 91

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3 Length = 101

 Score =  135 bits (341), Expect = 1e-41
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 12 IKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGG 71
          IK  K   N LL R+++   V + G  +  + D+R KL+ M  +  E +     +T +G 
Sbjct: 3  IKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGM 61

Query: 72 GKSTGFALIYDSIDLAKKFEPKYRLQR 98
           +S G+A +Y+  D  K+ E +Y L+R
Sbjct: 62 QESKGYAKLYEDADRMKQVEQEYVLKR 88

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 138

 Score =  135 bits (340), Expect = 5e-41
 Identities = 60/99 (60%), Positives = 79/99 (79%), Gaps = 1/99 (1%)

Query: 1  MKTVLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPEN- 59
          M    +A  VT++TRK+MTNRLL RKQ V++VLHPG+ +V K D++EKL+K+++ K  N 
Sbjct: 1  MADTKTAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNC 60

Query: 60 IFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          IF F F+T+FGGGKSTGF LIYD++D AKK+EPKYRL R
Sbjct: 61 IFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3 Length = 98

 Score =  131 bits (331), Expect = 4e-40
 Identities = 18/87 (20%), Positives = 36/87 (41%)

Query: 12 IKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGG 71
          +  ++   N +L RK++   +      +  + +I+E ++K      E +     +   G 
Sbjct: 3  LIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGK 62

Query: 72 GKSTGFALIYDSIDLAKKFEPKYRLQR 98
           +  G+  IY     A  +EP Y L R
Sbjct: 63 HEIEGYTKIYADKPSAMLYEPDYELIR 89

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3 Length = 102

 Score =  124 bits (313), Expect = 2e-37
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 12 IKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGG 71
          I       N LL R+++   V      +    D++ KL  +  +  + +        FG 
Sbjct: 3  ISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGK 61

Query: 72 GKSTGFALIYDSIDLAKKFEPKYRLQR 98
           ++ G+A IY+        E K  L++
Sbjct: 62 LEAEGYAKIYNDEKAMATIETKSVLEK 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 39/289 (13%), Positives = 74/289 (25%), Gaps = 99/289 (34%)

Query: 2   KTVLSASTV-TIKTRKYMTNRL----LGRKQMVVDVL-------------------HPGK 37
           KT ++     + K +  M  ++    L        VL                   H   
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 38  PSVKKTDIREKLSKMFKSK--------------PENIFAFGFQ------------TNFGG 71
             ++   I+ +L ++ KSK               +   AF               T+F  
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 72  GKSTGFALIYDSIDLAKKFEPKYRLQ------RVSTKSL-------LVLIIATIGITSCQ 118
             +T           +    P               + L           ++ I   S +
Sbjct: 283 AATTT---HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESIR 338

Query: 119 EAEHKIDHSELVFDH-----ICFSYASLYPLEDK------------IEIPPIILNRNVCW 161
           +     D+ + V        I  S   L P E +              IP I+L  ++ W
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--SLIW 396

Query: 162 S--------LSMSKVLALSSYIKWCTSYHCKGSDWYLHIVSSLLDVESD 202
                    + ++K+   S   K             +  +   L V+ +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTI-----SIPSIYLELKVKLE 440

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 48/192 (25%)

Query: 11  TIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKK---------TDIREKLSKMFKSKPE-NI 60
           ++ TR Y+  R         D L+       K           +R+ L ++   +P  N+
Sbjct: 106 SMMTRMYIEQR---------DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL---RPAKNV 153

Query: 61  FAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPK-Y--RLQRVSTKSLLVLIIATIGITSC 117
              G     G GK+     +  S  +  K + K +   L+  ++   ++ ++  +     
Sbjct: 154 LIDGV---LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 118 QEAEHKIDHSELVFDHICFSYASLYPLEDKIEIPP-----IILNRNVCWSLSMSKVLALS 172
                + DHS  +   I    A L  L   ++  P     ++L  NV  +        L 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKPYENCLLVL-LNV-QNAKAWNAFNL- 264

Query: 173 SYIKWCTSYHCK 184
                     CK
Sbjct: 265 ---------SCK 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	100.0
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	100.0
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	100.0
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	100.0
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	100.0
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	100.0
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	100.0

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y

Probab=100.00  E-value=1.7e-44  Score=290.44  Aligned_cols=98  Identities=52%  Similarity=0.905  Sum_probs=96.3

Q ss_pred             CCeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHH
Q psy397            7 ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDL   86 (202)
Q Consensus         7 ~~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~   86 (202)
                      +|+||||||||++||||+||||+|+|+|||+|||||+||+++||+|||+++|+||||+|+|+||+|+|+|||+||||+|+
T Consensus         2 ~~~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~IYds~d~   81 (135)
T 3u5c_Y            2 SDAVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLVYNSVAE   81 (135)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEEESSHHH
T ss_pred             CCcEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEEeCCHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcceeeeeCCccce
Q psy397           87 AKKFEPKYRLQRVSTKSL  104 (202)
Q Consensus        87 aKK~EPKyrL~Rngl~ek  104 (202)
                      |+++||+|+|+|||+.|+
T Consensus        82 akk~EPkyrL~R~gl~ek   99 (135)
T 3u5c_Y           82 AKKFEPTYRLVRYGLAEK   99 (135)
T ss_dssp             HHHHSCHHHHHHHTSSCC
T ss_pred             HHhcCchheEeecccccc
Confidence            999999999999999886

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P

Probab=100.00  E-value=7.3e-43  Score=284.98  Aligned_cols=97  Identities=46%  Similarity=0.842  Sum_probs=94.8

Q ss_pred             CeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q psy397            8 STVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLA   87 (202)
Q Consensus         8 ~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~a   87 (202)
                      ++||||||||++||||+|+||+|+|+|||+|||||+||+++||+|||+++|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus         1 ~~vtirtrk~~~N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~IYDs~e~a   80 (149)
T 2xzm_P            1 MTIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALVYDNQQYL   80 (149)
T ss_dssp             -CCEEEEEEEEEETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEEESCHHHH
T ss_pred             CcEEEEecccccccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcceeeeeCCccce
Q psy397           88 KKFEPKYRLQRVSTKSL  104 (202)
Q Consensus        88 KK~EPKyrL~Rngl~ek  104 (202)
                      ++|||+|||+|||+.++
T Consensus        81 Kk~EPkyrL~Rngl~ek   97 (149)
T 2xzm_P           81 LKYEPNYRLRKVKILGE   97 (149)
T ss_dssp             HHHSCHHHHHHTTSSCC
T ss_pred             HhhCchheeeecccccc
Confidence            99999999999999876

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3

Probab=100.00  E-value=1.1e-42  Score=269.91  Aligned_cols=96  Identities=31%  Similarity=0.516  Sum_probs=91.7

Q ss_pred             eEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q psy397            9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAK   88 (202)
Q Consensus         9 ~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aK   88 (202)
                      ...|+|+++++||||+|||++|+|.|||+|||||+||+++||+|||+++++|||++|+|+||+|+|+|||+||||+|+||
T Consensus         8 ~mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~ak   87 (107)
T 2v94_A            8 EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKYYYDKDRML   87 (107)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEEESSHHHHH
T ss_pred             eeEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEECCHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcceeeeeCCccce
Q psy397           89 KFEPKYRLQRVSTKSL  104 (202)
Q Consensus        89 K~EPKyrL~Rngl~ek  104 (202)
                      ++||+|||+|||+.++
T Consensus        88 k~Epky~L~R~g~~e~  103 (107)
T 2v94_A           88 YIEPEYILIRDGIIEK  103 (107)
T ss_dssp             HHSCHHHHHHTTC---
T ss_pred             hhCchheeeecCcccc
Confidence            9999999999999765

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3

Probab=100.00  E-value=2.4e-42  Score=264.34  Aligned_cols=94  Identities=20%  Similarity=0.251  Sum_probs=92.1

Q ss_pred             EEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhc
Q psy397           11 TIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKF   90 (202)
Q Consensus        11 TIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~   90 (202)
                      .|++.++++||||+|||++|+|.|||+|||||+||+++||+|||+++++|||++|+|+||+|+|+|||+||||+|+||++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~kk~   81 (98)
T 2g1d_A            2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKIYADKPSAMLY   81 (98)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEECCHHHHHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeeeCCccce
Q psy397           91 EPKYRLQRVSTKSL  104 (202)
Q Consensus        91 EPKyrL~Rngl~ek  104 (202)
                      ||+|||+|||+.++
T Consensus        82 Epky~l~R~~~~~~   95 (98)
T 2g1d_A           82 EPDYELIRNGLKQK   95 (98)
T ss_dssp             CTTSCSCSSCCCSS
T ss_pred             CcceeeeecCcccc
Confidence            99999999999775

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.6e-44  Score=287.02  Aligned_cols=99  Identities=58%  Similarity=0.999  Sum_probs=94.2

Q ss_pred             cCCeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCC-CCCeEEEeceeecCCCCEEEEEEEEeCCH
Q psy397            6 SASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKS-KPENIFAFGFQTNFGGGKSTGFALIYDSI   84 (202)
Q Consensus         6 ~~~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnv-d~dlVVVfg~kT~FGgGkStGfA~IYDS~   84 (202)
                      +.++||||||||++||||+||||+|+|+|||+|||||+||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||+
T Consensus         6 ~~~~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~IYds~   85 (138)
T 3iz6_U            6 TAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNL   85 (138)
T ss_dssp             CCSSCCCCCCCCCCBTTTTCCCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCCSSCH
T ss_pred             ccccEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEEeCCH
Confidence            35689999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHhcCcceeeeeCCccce
Q psy397           85 DLAKKFEPKYRLQRVSTKSL  104 (202)
Q Consensus        85 E~aKK~EPKyrL~Rngl~ek  104 (202)
                      |+|+++||+|||+|||+.|+
T Consensus        86 d~aKk~EPkyrL~R~gl~ek  105 (138)
T 3iz6_U           86 DAAKKYEPKYRLIRNGLATK  105 (138)
T ss_dssp             HHHHSSCCCBTTTTTCC---
T ss_pred             HHHHhcCchheEeecccccc
Confidence            99999999999999999886

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3

Probab=100.00  E-value=2.4e-41  Score=260.01  Aligned_cols=93  Identities=28%  Similarity=0.401  Sum_probs=91.1

Q ss_pred             EEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhc
Q psy397           11 TIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKF   90 (202)
Q Consensus        11 TIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~   90 (202)
                      .|++.++++||||+|||++|+|.| |+|||||+|||++||+|||+++++|||++|+|+||+|+|+|||+||||.|+||++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~IYds~e~akk~   80 (101)
T 1xn9_A            2 DIKIIKDKKNPLLNRRELDFIVKY-EGSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQV   80 (101)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEC-SSSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEECCHHHHHhh
Confidence            589999999999999999999999 8899999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeeeCCccce
Q psy397           91 EPKYRLQRVSTKSL  104 (202)
Q Consensus        91 EPKyrL~Rngl~ek  104 (202)
                      ||+|||+|||+.++
T Consensus        81 Epky~L~R~g~~e~   94 (101)
T 1xn9_A           81 EQEYVLKRNAVPGS   94 (101)
T ss_dssp             HTGGGCCCCSCCCC
T ss_pred             CchheeeecCcccc
Confidence            99999999999876

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3

Probab=100.00  E-value=1.2e-40  Score=256.93  Aligned_cols=93  Identities=19%  Similarity=0.266  Sum_probs=90.3

Q ss_pred             EEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhc
Q psy397           11 TIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKF   90 (202)
Q Consensus        11 TIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~   90 (202)
                      .|.+-++++||||+|||++|+|.| |+|||||+|||++||+|||+++++|||++|+|+||+|+|+|||+||||.|+||++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~akk~   80 (102)
T 1ywx_A            2 DISIISDRNNPLLQRREIKFTVSF-DAATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMATI   80 (102)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEC-SSCCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHHS
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEEECCHHHHHhh
Confidence            478899999999999999999999 6799999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeeeCCccce
Q psy397           91 EPKYRLQRVSTKSL  104 (202)
Q Consensus        91 EPKyrL~Rngl~ek  104 (202)
                      ||+|||+|||+.++
T Consensus        81 Epky~L~R~gl~e~   94 (102)
T 1ywx_A           81 ETKSVLEKNKIEEE   94 (102)
T ss_dssp             SCHHHHHHSCSCCC
T ss_pred             CchhheeecCccch
Confidence            99999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d2v94a1	93	d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococc	4e-44
d2g1da1	98	d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermopl	1e-42
d1ywxa1	102	d.12.1.3 (A:1-102) Ribosomal protein S24e {Methano	1e-40
d1xn9a_	101	d.12.1.3 (A:) Ribosomal protein S24e {Methanosarci	1e-36

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  140 bits (354), Expect = 4e-44
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query: 12 IKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGG 71
          IK  +   N+L+GRK++  ++ HPG+P+  + D++ KL  M    PE       ++ FG 
Sbjct: 3  IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGS 62

Query: 72 GKSTGFALIYDSIDLAKKFEPKYRLQR 98
           KS G+A  Y   D     EP+Y L R
Sbjct: 63 YKSKGYAKYYYDKDRMLYIEPEYILIR 89

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

 Score =  136 bits (345), Expect = 1e-42
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
          + IK ++   N +L RK++   +      +  + +I+E ++K      E +     +   
Sbjct: 3  LIIKEKR--DNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLT 60

Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          G  +  G+  IY     A  +EP Y L R
Sbjct: 61 GKHEIEGYTKIYADKPSAMLYEPDYELIR 89

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

 Score =  131 bits (332), Expect = 1e-40
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
          ++I + +   N LL R+++   V      +    D++ KL  +  +  + +        F
Sbjct: 3  ISIISDRN--NPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIF 59

Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          G  ++ G+A IY+        E K  L++
Sbjct: 60 GKLEAEGYAKIYNDEKAMATIETKSVLEK 88

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

 Score =  121 bits (305), Expect = 1e-36
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
          + I   K   N LL R+++   V + G  +  + D+R KL+ M  +  E +     +T +
Sbjct: 3  IKIIKDKK--NPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNAPLELLVIQRIKTEY 59

Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          G  +S G+A +Y+  D  K+ E +Y L+R
Sbjct: 60 GMQESKGYAKLYEDADRMKQVEQEYVLKR 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d2v94a1	93	Ribosomal protein S24e {Pyrococcus abyssi [TaxId:	100.0
d2g1da1	98	Ribosomal protein S24e {Thermoplasma acidophilum [	100.0
d1ywxa1	102	Ribosomal protein S24e {Methanococcus maripaludis	100.0
d1xn9a_	101	Ribosomal protein S24e {Methanosarcina mazei [TaxI	100.0

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

Probab=100.00  E-value=9.1e-40  Score=246.11  Aligned_cols=91  Identities=33%  Similarity=0.554  Sum_probs=89.6

Q ss_pred             EEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhc
Q psy397           11 TIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKF   90 (202)
Q Consensus        11 TIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~   90 (202)
                      .++|+++++||||+|||+.|++.|||+|||||+||+++||++||+++++|||++++|+||+|+|+|||+||||.|+|+++
T Consensus         2 ei~i~~~~~N~LL~R~Ei~~~v~h~g~~Tpsr~ei~~kla~~~~~~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk~   81 (93)
T d2v94a1           2 EIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKYYYDKDRMLYI   81 (93)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEEESSHHHHHHH
T ss_pred             cEEEEEeccCCCcccEEEEEEEEcCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeCccCCCCceEEEEEEEECCHHHHHhh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeeeCCc
Q psy397           91 EPKYRLQRVST  101 (202)
Q Consensus        91 EPKyrL~Rngl  101 (202)
                      ||+|++.|||+
T Consensus        82 Ep~y~l~R~~l   92 (93)
T d2v94a1          82 EPEYILIRDGI   92 (93)
T ss_dssp             SCHHHHHHTTC
T ss_pred             ChHHhhhhccc
Confidence            99999999997

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.5e-39  Score=247.07  Aligned_cols=93  Identities=20%  Similarity=0.253  Sum_probs=89.2

Q ss_pred             EEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhcC
Q psy397           12 IKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFE   91 (202)
Q Consensus        12 IrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~E   91 (202)
                      +.+++.++||||+|||+.|+|.|||+|||||+||+++||++||+++++|||++|+|+||+|+|+|||+||||.|+|+++|
T Consensus         3 i~I~~~k~NpLL~RrEi~~~v~h~g~~Tpsr~ei~~kla~~~~~~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk~E   82 (98)
T d2g1da1           3 LIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKIYADKPSAMLYE   82 (98)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHHHC
T ss_pred             EEEEeeccCCCcccEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCcCEEEEEcCEecCCCceEEEEEEEECCHHHHHhhC
Confidence            55666679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeeCCccce
Q psy397           92 PKYRLQRVSTKSL  104 (202)
Q Consensus        92 PKyrL~Rngl~ek  104 (202)
                      |+|+|.|||+.++
T Consensus        83 p~y~l~R~~~~~~   95 (98)
T d2g1da1          83 PDYELIRNGLKQK   95 (98)
T ss_dssp             TTSCSCSSCCCSS
T ss_pred             chhhhhhcCcchh
Confidence            9999999999875

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

Probab=100.00  E-value=1.9e-38  Score=242.57  Aligned_cols=94  Identities=19%  Similarity=0.259  Sum_probs=90.7

Q ss_pred             EEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhc
Q psy397           11 TIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKF   90 (202)
Q Consensus        11 TIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~   90 (202)
                      .+++..+++||||+|||++|+|.||| |||||+||+++||++||+++++|||++|+|+||+|+|+|||+||||.|+|+++
T Consensus         2 eieI~~~k~N~LL~RkEi~~~v~h~g-~Tpsr~ei~~kla~~~~~~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk~   80 (102)
T d1ywxa1           2 DISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMATI   80 (102)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECSS-CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHHS
T ss_pred             ceEEEeeccCCCcccEEEEEEEECCC-CCCCHHHHHHHHHHHHCcCcCEEEEEcCEecCCCCeEEEEEEEECCHHHHHhh
Confidence            47888999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeeeCCcccee
Q psy397           91 EPKYRLQRVSTKSLL  105 (202)
Q Consensus        91 EPKyrL~Rngl~ek~  105 (202)
                      ||+|++.|||+.++.
T Consensus        81 Ep~y~l~R~~~~~~~   95 (102)
T d1ywxa1          81 ETKSVLEKNKIEEEA   95 (102)
T ss_dssp             SCHHHHHHSCSCCCC
T ss_pred             CchheeeecCccccc
Confidence            999999999987753

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

Probab=100.00  E-value=1.4e-37  Score=237.25  Aligned_cols=92  Identities=29%  Similarity=0.442  Sum_probs=88.7

Q ss_pred             EEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhc
Q psy397           11 TIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKF   90 (202)
Q Consensus        11 TIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~   90 (202)
                      .+.+.+.++||||+|||+.|+|.||| +||||+||+++||++||+++++|||++|+|+||+|+|+|||+||||.|+|+++
T Consensus         2 eieI~~~k~N~LL~R~Ei~~~v~h~g-~Tpsr~ei~~kla~~~~~~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~k~~   80 (101)
T d1xn9a_           2 DIKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQV   80 (101)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECSS-SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHHH
T ss_pred             ceEEEeeccCCCcccEEEEEEEECCC-CCCCHHHHHHHHHHhHCcCcCEEEEEcCcccCCCceEEEEEEEECCHHHHHhh
Confidence            46788889999999999999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeeeCCccc
Q psy397           91 EPKYRLQRVSTKS  103 (202)
Q Consensus        91 EPKyrL~Rngl~e  103 (202)
                      ||+|++.||++.+
T Consensus        81 Ep~y~l~R~~~~~   93 (101)
T d1xn9a_          81 EQEYVLKRNAVPG   93 (101)
T ss_dssp             HTGGGCCCCSCCC
T ss_pred             CchheeeecCccc
Confidence            9999999999754