Psyllid ID: psy4038

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
MFCKKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELDKSSYEQNTTLKT
ccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccEEEEEcccccccccccccEEEEEEccccEEEEEEEccccccccccccccccccccEEcccccccccEEEEEcccccccccccccccccHHHHHHHHHcHHHHHHccccccccccccccccccccccHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccc
ccHHHHcccHHccHcHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHHHHHcccEEEEccccccccccccEEEEEEEcccccEEEEEEEEcccccccccccEEEEEEcccEcccccEccEEEEEEccccccccccccEccHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccHHHHHHHHHHHHcHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccHHHHccccccHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHcccccccHHHccccccc
mfckkknkkkgyiLWDIAYVSNKakrdklkltgidfapyfslgtCMEGLNNLFNKIYGITLQHVeanngelwssDVYKLAVTHEKEGLLGYiycdfferqkkpnqdchftirggrklsngsyqnPIVVLMLnlptprwsspclltpaMVDNLFHEMGHAMHSMLARtdyqhvtgtrcatdfaevPSVLMEFFASDPRVIKSFAKhyiggqpmpeEMLQSFCLSKKLFQASEMQAQVFYSALdleyhssevTNTFQQLKECqntyygipyiehtaWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSyfekdpfsrdsgdayrlnclshgggkpasKLVSDFLQKDITAESLTNSLMQELdkssyeqnttlkt
mfckkknkkkgyilwdIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTirggrklsngsYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNslmqeldkssyeqnttlkt
MFCKKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELDKSSYEQNTTLKT
*********KGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSRDSGDAYRLNCLSH********************************************
MFC****KKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQE**************
********KKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELDKS**********
MFCKKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELDKSS*********
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MFCKKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELDKSSYEQNTTLKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query371 2.2.26 [Sep-21-2011]
Q99797713 Mitochondrial intermediat yes N/A 0.929 0.483 0.570 1e-118
Q5RF14713 Mitochondrial intermediat yes N/A 0.929 0.483 0.573 1e-118
A6H611711 Mitochondrial intermediat yes N/A 0.929 0.485 0.570 1e-116
Q01992710 Mitochondrial intermediat yes N/A 0.929 0.485 0.567 1e-116
Q6FW88761 Mitochondrial intermediat yes N/A 0.886 0.432 0.397 2e-68
Q753X4776 Mitochondrial intermediat yes N/A 0.822 0.393 0.413 4e-68
A8QB25806 Mitochondrial intermediat N/A N/A 0.962 0.442 0.349 2e-67
A7TSL2787 Mitochondrial intermediat N/A N/A 0.822 0.387 0.416 5e-67
A6ZZI7772 Mitochondrial intermediat N/A N/A 0.819 0.393 0.399 8e-67
P35999772 Mitochondrial intermediat yes N/A 0.819 0.393 0.399 1e-66
>sp|Q99797|MIPEP_HUMAN Mitochondrial intermediate peptidase OS=Homo sapiens GN=MIPEP PE=1 SV=2 Back     alignment and function desciption
 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/347 (57%), Positives = 250/347 (72%), Gaps = 2/347 (0%)

Query: 15  WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
           WD  Y S   + ++  +    + P+FSLG CMEGLN L N++ GI+L   +   GE+WS 
Sbjct: 356 WDPPYYSGVIRAERYNIEPSLYCPFFSLGACMEGLNILLNRLLGISLYAEQPAKGEVWSE 415

Query: 75  DVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLP 134
           DV KLAV HE EGLLGYIYCDFF+R  KP+QDCHFTIRGGR   +G YQ P+VVLMLNLP
Sbjct: 416 DVRKLAVVHESEGLLGYIYCDFFQRADKPHQDCHFTIRGGRLKEDGDYQLPVVVLMLNLP 475

Query: 135 TPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFAS 194
               SSP LLTP+M++NLFHEMGHAMHSML RT YQHVTGTRC TDFAEVPS+LME+FA+
Sbjct: 476 RSSRSSPTLLTPSMMENLFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFAN 535

Query: 195 DPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEV--TN 252
           D RV+  FA+HY  GQP+P+ M+   C SKK+  A++MQ QVFY+ LD  YH       +
Sbjct: 536 DYRVVNQFARHYQTGQPLPKNMVSRLCESKKVCAAADMQLQVFYATLDQIYHGKHPLRNS 595

Query: 253 TFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPF 312
           T   LKE Q  +YG+PY+ +TAWQ RFSHLVGYGA+YYSYL+SRAVAS +W+  F +DPF
Sbjct: 596 TTDILKETQEKFYGLPYVPNTAWQLRFSHLVGYGARYYSYLMSRAVASMVWKECFLQDPF 655

Query: 313 SRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELD 359
           +R +G+ YR   L+HGGG+    +V   LQK  + +   ++L+ +LD
Sbjct: 656 NRAAGERYRREMLAHGGGREPMLMVEGMLQKCPSVDDFVSALVSDLD 702
Cleaves proteins, imported into the mitochondrion, to their mature size.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 5EC: 9
>sp|Q5RF14|MIPEP_PONAB Mitochondrial intermediate peptidase OS=Pongo abelii GN=MIPEP PE=2 SV=1 Back     alignment and function description
>sp|A6H611|MIPEP_MOUSE Mitochondrial intermediate peptidase OS=Mus musculus GN=Mipep PE=2 SV=1 Back     alignment and function description
>sp|Q01992|MIPEP_RAT Mitochondrial intermediate peptidase OS=Rattus norvegicus GN=Mipep PE=1 SV=1 Back     alignment and function description
>sp|Q6FW88|PMIP_CANGA Mitochondrial intermediate peptidase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=OCT1 PE=3 SV=1 Back     alignment and function description
>sp|Q753X4|PMIP_ASHGO Mitochondrial intermediate peptidase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=OCT1 PE=3 SV=1 Back     alignment and function description
>sp|A8QB25|PMIP_MALGO Mitochondrial intermediate peptidase OS=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) GN=OCT1 PE=3 SV=2 Back     alignment and function description
>sp|A7TSL2|PMIP_VANPO Mitochondrial intermediate peptidase OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=OCT1 PE=3 SV=1 Back     alignment and function description
>sp|A6ZZI7|PMIP_YEAS7 Mitochondrial intermediate peptidase OS=Saccharomyces cerevisiae (strain YJM789) GN=OCT1 PE=3 SV=1 Back     alignment and function description
>sp|P35999|PMIP_YEAST Mitochondrial intermediate peptidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OCT1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
158285109 696 AGAP007728-PA [Anopheles gambiae str. PE 0.929 0.495 0.658 1e-141
312373667 708 hypothetical protein AND_17148 [Anophele 0.938 0.491 0.658 1e-141
170048852 708 mitochondrial intermediate peptidase [Cu 0.959 0.502 0.631 1e-141
157136505 701 mitochondrial intermediate peptidase [Ae 0.938 0.496 0.655 1e-140
307199384 693 Mitochondrial intermediate peptidase [Ha 0.946 0.506 0.636 1e-139
198459326 701 GA20590 [Drosophila pseudoobscura pseudo 0.932 0.493 0.633 1e-137
195172640 698 GL20060 [Drosophila persimilis] gi|19411 0.932 0.495 0.633 1e-137
195028205 701 GH20228 [Drosophila grimshawi] gi|193902 0.932 0.493 0.627 1e-137
194758248 700 GF13838 [Drosophila ananassae] gi|190622 0.967 0.512 0.604 1e-137
322786063 694 hypothetical protein SINV_05781 [Solenop 0.946 0.505 0.636 1e-136
>gi|158285109|ref|XP_308148.3| AGAP007728-PA [Anopheles gambiae str. PEST] gi|157019834|gb|EAA04703.3| AGAP007728-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 229/348 (65%), Positives = 280/348 (80%), Gaps = 3/348 (0%)

Query: 15  WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
           WD  Y ++  KR  L+ +  +F+PYFSLG CMEGLN L N ++GI+L++ E   GE W  
Sbjct: 335 WDTPYFTSSLKRKHLQASASEFSPYFSLGACMEGLNLLMNSLFGISLRNTEMEPGESWFH 394

Query: 75  DVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLP 134
           D+YKLAV HE EGLLG+IYCDFFERQ KPNQDCHFTI+GG+ + +GS+QNPIVV+MLNL 
Sbjct: 395 DIYKLAVEHETEGLLGHIYCDFFERQGKPNQDCHFTIQGGKVMPDGSFQNPIVVVMLNLS 454

Query: 135 TPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFAS 194
            PRWS P LLTP+MVDNLFHEMGHAMHSMLART++QHVTGTRC+TDFAEVPSVLME+FA+
Sbjct: 455 QPRWSGPTLLTPSMVDNLFHEMGHAMHSMLARTEFQHVTGTRCSTDFAEVPSVLMEYFAN 514

Query: 195 DPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSS---EVT 251
           DPRV++SFAKH+   +PMPE ML+  C SK LF +SEMQ QVFYSALD  YH +      
Sbjct: 515 DPRVLRSFAKHFQTQEPMPESMLERLCTSKHLFASSEMQLQVFYSALDQVYHGNHDMHAE 574

Query: 252 NTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDP 311
           NT Q L+  Q  YYG+PY+E+TAWQ RFSHLVGYGAKYYSYL+SRA+ASWIWQ+YFE+DP
Sbjct: 575 NTTQTLQRVQEKYYGLPYVENTAWQLRFSHLVGYGAKYYSYLISRAIASWIWQTYFERDP 634

Query: 312 FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELD 359
           FSR  G+ YR  CL++GGG P+  LVS+FL ++IT  +LT+SL+ E+D
Sbjct: 635 FSRTEGEKYRRGCLAYGGGIPSRLLVSNFLGREITPTNLTSSLISEID 682

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|312373667|gb|EFR21368.1| hypothetical protein AND_17148 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170048852|ref|XP_001870806.1| mitochondrial intermediate peptidase [Culex quinquefasciatus] gi|167870805|gb|EDS34188.1| mitochondrial intermediate peptidase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157136505|ref|XP_001656860.1| mitochondrial intermediate peptidase [Aedes aegypti] gi|108881029|gb|EAT45254.1| AAEL003461-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|307199384|gb|EFN80009.1| Mitochondrial intermediate peptidase [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|198459326|ref|XP_001361340.2| GA20590 [Drosophila pseudoobscura pseudoobscura] gi|198136654|gb|EAL25918.2| GA20590 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195172640|ref|XP_002027104.1| GL20060 [Drosophila persimilis] gi|194112917|gb|EDW34960.1| GL20060 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195028205|ref|XP_001986967.1| GH20228 [Drosophila grimshawi] gi|193902967|gb|EDW01834.1| GH20228 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|194758248|ref|XP_001961374.1| GF13838 [Drosophila ananassae] gi|190622672|gb|EDV38196.1| GF13838 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|322786063|gb|EFZ12674.1| hypothetical protein SINV_05781 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
FB|FBgn0033038699 CG7791 [Drosophila melanogaste 0.932 0.494 0.598 7.4e-121
ZFIN|ZDB-GENE-050506-64676 im:6903007 "im:6903007" [Danio 0.964 0.529 0.575 5.9e-112
ZFIN|ZDB-GENE-060503-662702 mipep "mitochondrial intermedi 0.956 0.505 0.568 3.3e-111
UNIPROTKB|F1P174711 MIPEP "Uncharacterized protein 0.959 0.500 0.557 9e-109
UNIPROTKB|Q99797713 MIPEP "Mitochondrial intermedi 0.956 0.497 0.558 1.5e-108
UNIPROTKB|F1PWG7616 MIPEP "Uncharacterized protein 0.956 0.576 0.558 2.4e-108
MGI|MGI:1917728711 Mipep "mitochondrial intermedi 0.956 0.499 0.558 2.7e-107
UNIPROTKB|F1MX73712 MIPEP "Uncharacterized protein 0.956 0.498 0.550 4.4e-107
RGD|621680710 Mipep "mitochondrial intermedi 0.956 0.5 0.555 1.2e-106
UNIPROTKB|Q01992710 Mipep "Mitochondrial intermedi 0.956 0.5 0.555 1.2e-106
FB|FBgn0033038 CG7791 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
 Identities = 209/349 (59%), Positives = 274/349 (78%)

Query:    14 LWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWS 73
             +WD  Y +N+ +R   +    +F PYFSLG CMEGL+NL + +YGI LQ+ +   GE W 
Sbjct:   337 VWDTPYYTNQLRRQLFEEHANEFLPYFSLGGCMEGLDNLLHALYGIRLQNTDLKPGEAWH 396

Query:    74 SDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNL 133
             +D+YKLAV HE+EGLLGYIYCDF+ER  KPNQDCHFTI+GG+++ +GSYQ P+VV+ML L
Sbjct:   397 NDIYKLAVVHEREGLLGYIYCDFYERVGKPNQDCHFTIQGGKRMPDGSYQLPVVVVMLGL 456

Query:   134 PTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFA 193
               PRWS P LL+PA +DNLFHEMGHAMHSMLART++QHVTGTRC+TDFAEVPSVLME+FA
Sbjct:   457 AQPRWSGPTLLSPARLDNLFHEMGHAMHSMLARTEHQHVTGTRCSTDFAEVPSVLMEYFA 516

Query:   194 SDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTN- 252
              DPRV+++FA+H+   +P+ E+ML+  C SK LF ASE Q QVFYSALD EYH +   + 
Sbjct:   517 GDPRVLRTFARHFQTHEPISEDMLRRLCASKNLFAASETQLQVFYSALDQEYHGASARHG 576

Query:   253 --TFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKD 310
               +   L+  Q+ YYG+PY+++TAWQ RFSHLVGYGAKYY+YL+S+ +ASWIWQ+YFE +
Sbjct:   577 QSSTDTLRSVQDHYYGLPYVDNTAWQLRFSHLVGYGAKYYAYLVSKTIASWIWQTYFEAN 636

Query:   311 PFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELD 359
             PF+R +G+ YR   L+HGG  P+ KLV++FLQ+++T   L +SL+ E+D
Sbjct:   637 PFNRQAGEKYRAEILAHGGAVPSRKLVANFLQREMTPSVLADSLITEID 685
GO:0004222 "metalloendopeptidase activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISS
GO:0016485 "protein processing" evidence=ISS
GO:0006508 "proteolysis" evidence=IEA
ZFIN|ZDB-GENE-050506-64 im:6903007 "im:6903007" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-662 mipep "mitochondrial intermediate peptidase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P174 MIPEP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q99797 MIPEP "Mitochondrial intermediate peptidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PWG7 MIPEP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1917728 Mipep "mitochondrial intermediate peptidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MX73 MIPEP "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621680 Mipep "mitochondrial intermediate peptidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q01992 Mipep "Mitochondrial intermediate peptidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A6H611MIPEP_MOUSE3, ., 4, ., 2, 4, ., 5, 90.57060.92990.4852yesN/A
Q5RF14MIPEP_PONAB3, ., 4, ., 2, 4, ., 5, 90.57340.92990.4838yesN/A
Q01992MIPEP_RAT3, ., 4, ., 2, 4, ., 5, 90.56770.92990.4859yesN/A
Q99797MIPEP_HUMAN3, ., 4, ., 2, 4, ., 5, 90.57060.92990.4838yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.59LOW CONFIDENCE prediction!
3rd Layer3.4.24LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
cd06457606 cd06457, M3A_MIP, Peptidase M3 mitochondrial inter 0.0
cd09605590 cd09605, M3A, Peptidase M3A family includes Thimet 1e-148
pfam01432450 pfam01432, Peptidase_M3, Peptidase family M3 2e-99
COG0339683 COG0339, Dcp, Zn-dependent oligopeptidases [Amino 7e-85
cd06455637 cd06455, M3A_TOP, Peptidase M3 Thimet oligopeptida 9e-82
cd06456654 cd06456, M3A_DCP, Peptidase family M3 dipeptidyl c 3e-67
PRK10911680 PRK10911, PRK10911, oligopeptidase A; Provisional 2e-43
PRK10280681 PRK10280, PRK10280, dipeptidyl carboxypeptidase II 2e-33
cd06258400 cd06258, M3_like, Peptidase M3-like family, a zinc 2e-18
cd09606546 cd09606, M3B_PepF_1, Peptidase family M3B Oligopep 6e-07
COG1164598 COG1164, COG1164, Oligoendopeptidase F [Amino acid 2e-05
cd06459450 cd06459, M3B_PepF, Peptidase family M3B Oligopepti 3e-04
cd09609586 cd09609, M3B_PepF_4, Peptidase family M3B Oligopep 0.003
>gnl|CDD|188996 cd06457, M3A_MIP, Peptidase M3 mitochondrial intermediate peptidase (MIP) Back     alignment and domain information 
 Score =  574 bits (1482), Expect = 0.0
 Identities = 183/344 (53%), Positives = 227/344 (65%), Gaps = 4/344 (1%)

Query: 15  WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
           WD  Y ++KA++        + +PYFSLGT MEGL+ LF+++YGI L  V    GE W  
Sbjct: 263 WDRDYYTSKARQAACPSDSQELSPYFSLGTVMEGLSRLFSRLYGIRLVPVPTAPGETWHP 322

Query: 75  DVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLP 134
           DV KLAV HE EGLLGYIYCD FER  KP Q  HFTIR  R+L +GSYQ P+V L+ N P
Sbjct: 323 DVRKLAVVHETEGLLGYIYCDLFERPGKPPQAAHFTIRCSRRLDDGSYQLPVVALVCNFP 382

Query: 135 TPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFAS 194
            P  SSP LL+   V+ LFHEMGHAMHSML RT YQHV+GTRCATDF E+PS+LME+FA 
Sbjct: 383 PPSGSSPTLLSHGEVETLFHEMGHAMHSMLGRTKYQHVSGTRCATDFVELPSILMEYFAW 442

Query: 195 DPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVT--- 251
           DPRV+  FA+HY  G+P+PE+++   C SK LF A E Q Q+ Y+ LD EYHS       
Sbjct: 443 DPRVLSLFARHYSTGEPLPEKLVARLCASKFLFAALETQQQILYALLDQEYHSEHPLPPS 502

Query: 252 -NTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKD 310
            ++     + Q  Y G+PY+  TAWQ RF HLVGYGA YYSYL  RA+AS IWQ  F  D
Sbjct: 503 FSSTDIYHDLQRKYSGLPYVPGTAWQLRFGHLVGYGATYYSYLFDRAIASKIWQKLFAAD 562

Query: 311 PFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSL 354
           P SR++G+  R   L HGGGK   +L++D L +    E    ++
Sbjct: 563 PLSREAGERLREEVLKHGGGKDPWELLADVLGEPPLPEGGAGAM 606

Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbol MIPEP) may be one of the loci predicted to influence the clinical manifestations of Friedreich's ataxia (FRDA), an autosomal recessive neurodegenerative disease caused by lack of human frataxin. These proteins are enriched in cysteine residues, two of which are highly conserved, suggesting their importance to stability as well as in formation of metal binding sites, thus playing a role in MIP activity. Length = 606
>gnl|CDD|189012 cd09605, M3A, Peptidase M3A family includes Thimet oligopeptidase, dipeptidyl carboxypeptidase and mitochondrial intermediate peptidase Back     alignment and domain information
>gnl|CDD|216500 pfam01432, Peptidase_M3, Peptidase family M3 Back     alignment and domain information
>gnl|CDD|223416 COG0339, Dcp, Zn-dependent oligopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|188994 cd06455, M3A_TOP, Peptidase M3 Thimet oligopeptidase (TOP) also includes neurolysin Back     alignment and domain information
>gnl|CDD|188995 cd06456, M3A_DCP, Peptidase family M3 dipeptidyl carboxypeptidase (DCP) Back     alignment and domain information
>gnl|CDD|182832 PRK10911, PRK10911, oligopeptidase A; Provisional Back     alignment and domain information
>gnl|CDD|182353 PRK10280, PRK10280, dipeptidyl carboxypeptidase II; Provisional Back     alignment and domain information
>gnl|CDD|188993 cd06258, M3_like, Peptidase M3-like family, a zincin metallopeptidase, includes M3 and M32 families Back     alignment and domain information
>gnl|CDD|189013 cd09606, M3B_PepF_1, Peptidase family M3B Oligopeptidase F (PepF) Back     alignment and domain information
>gnl|CDD|224086 COG1164, COG1164, Oligoendopeptidase F [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|188997 cd06459, M3B_PepF, Peptidase family M3B Oligopeptidase F (PepF) Back     alignment and domain information
>gnl|CDD|189016 cd09609, M3B_PepF_4, Peptidase family M3B Oligopeptidase F (PepF) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 371
COG0339683 Dcp Zn-dependent oligopeptidases [Amino acid trans 100.0
PRK10280681 dipeptidyl carboxypeptidase II; Provisional 100.0
cd06457458 M3A_MIP Peptidase M3 mitochondrial intermediate pe 100.0
PRK10911680 oligopeptidase A; Provisional 100.0
KOG2090|consensus704 100.0
cd06456422 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipep 100.0
KOG2089|consensus718 100.0
cd06455472 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; P 100.0
PF01432458 Peptidase_M3: Peptidase family M3 This Prosite mot 100.0
cd06258365 Peptidase_M3_like The peptidase M3-like family, al 100.0
cd06459427 M3B_Oligoendopeptidase_F Peptidase family M3B Olig 100.0
TIGR02289549 M3_not_pepF oligoendopeptidase, M3 family. This fa 100.0
TIGR02290587 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M 100.0
TIGR00181591 pepF oligoendopeptidase F. This family represents 100.0
COG1164598 Oligoendopeptidase F [Amino acid transport and met 100.0
cd06460396 M32_Taq Peptidase family M32 is a subclass of meta 99.89
cd06461477 M2_ACE Peptidase family M2 Angiotensin converting 99.74
PF02074494 Peptidase_M32: Carboxypeptidase Taq (M32) metallop 99.38
COG2317497 Zn-dependent carboxypeptidase [Amino acid transpor 99.09
PF01401595 Peptidase_M2: Angiotensin-converting enzyme This P 98.69
KOG3690|consensus646 98.11
cd04277186 ZnMc_serralysin_like Zinc-dependent metalloproteas 94.99
COG2856213 Predicted Zn peptidase [Amino acid transport and m 92.89
cd04278157 ZnMc_MMP Zinc-dependent metalloprotease, matrix me 92.72
cd00203167 ZnMc Zinc-dependent metalloprotease. This super-fa 90.47
smart00235140 ZnMc Zinc-dependent metalloprotease. Neutral zinc 90.05
PF06114122 DUF955: Domain of unknown function (DUF955); Inter 88.91
PF00413154 Peptidase_M10: Matrixin This Prosite motif covers 86.66
PF14247220 DUF4344: Domain of unknown function (DUF4344) 86.38
PF13583206 Reprolysin_4: Metallo-peptidase family M12B Reprol 84.34
PRK13267179 archaemetzincin-like protein; Reviewed 83.98
cd04268165 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_ 82.44
cd04279156 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM 82.19
cd04270244 ZnMc_TACE_like Zinc-dependent metalloprotease; TAC 82.12
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-102  Score=783.26  Aligned_cols=350  Identities=29%  Similarity=0.555  Sum_probs=333.9

Q ss_pred             ccccc-CCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEE
Q psy4038           2 FCKKK-NKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLA   80 (371)
Q Consensus         2 ~~~~~-~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~   80 (371)
                      ||+++ ++...++|||++||.+|+|+.+|++|+++|++|||+++||+|+|.++++||||+|++.  .+++||||||++|+
T Consensus       322 ~~~~~~~~~~~l~~WD~~yyaeK~r~~~y~~de~elrpYF~l~~Vl~GlF~~~~rLfGI~~~e~--~~~~vwHpDVr~~~  399 (683)
T COG0339         322 FAAEEEGGLPELQPWDWAYYAEKQRQEKYAFDEEELRPYFPLNKVLEGLFEVAKRLFGITFVER--KDIPVWHPDVRVFE  399 (683)
T ss_pred             HHHhhccCCcccchhhHHHHHHHHHhhhcCCCHHHhhhcCChhHHHHHHHHHHHHHcCeEEEEC--CCCCccCCCceEEE
Confidence            56774 8899999999999999999999999999999999999999999999999999999987  45789999999999


Q ss_pred             EEeCCCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHH
Q psy4038          81 VTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAM  160 (371)
Q Consensus        81 v~~~~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHal  160 (371)
                      |+|++|..+|.||+|+|+|+||++|||++++++++...+|+.|.||++++|||++|.+++|+||+|+||+||||||||+|
T Consensus       400 v~d~~g~~~g~fY~DlyaR~~KrgGAWM~~~~~~~~~~~~~~q~PV~ylvCNF~~p~~gkPaLls~dEV~TLFHEfGHgL  479 (683)
T COG0339         400 VFDENGELIGLFYLDLYARDGKRGGAWMDDFVSQRRLDDGGGQKPVIYLVCNFTKPVGGKPALLSHDEVTTLFHEFGHGL  479 (683)
T ss_pred             EEcCCCCEEEEEEeecccCCCCccchHHHHhhhcccccCCCcccceEEEeccCCCCCCCCCceeeHHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHH
Q psy4038         161 HSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSA  240 (371)
Q Consensus       161 H~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~  240 (371)
                      |++|++++|+.+|||+|+|||||+||||||||||+|.+|..+++||+||+|||+++++++++++++++++.++||+.+|+
T Consensus       480 H~mlt~v~~~~vsGt~v~wDfVElPSQ~mE~w~~~p~vL~~~a~Hy~TGe~lP~~ll~k~laaknf~~g~~t~rql~fal  559 (683)
T COG0339         480 HHLLTRVKYPGVSGTNVPWDFVELPSQFMENWCWEPEVLAKYARHYQTGEPLPKELLDKMLAAKNFQAGLFTLRQLEFAL  559 (683)
T ss_pred             HHHhhcCCccccCCCCCCcchhhccHHHHHHhhcCHHHHHHHHHhhccCCcCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCC-C---CCHHHHHHHHHHHhcCCCCCCCCcccccccccc--ccCccchhHHHHHHHHHHHHHHHHhhCCCCh
Q psy4038         241 LDLEYHSSE-V---TNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLV--GYGAKYYSYLLSRAVASWIWQSYFEKDPFSR  314 (371)
Q Consensus       241 ~D~~lH~~~-~---~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~--~Y~a~YYsYl~s~v~A~~i~~~~~~~~~~~~  314 (371)
                      |||.+|... |   .++.++++++.++..-.+.++..+|.++|+|||  ||+|+||||+|++|+++|.|+.|++.|++|+
T Consensus       560 ~Dm~~H~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~~F~HIFagGYsAGYYSY~WaeVLsaDafa~Fee~g~~~~  639 (683)
T COG0339         560 FDMRLHTEFDPDANADILEFEAEVLKKVAVLPSIPPRRRPHSFGHIFAGGYSAGYYSYLWAEVLSADAFAAFEEEGPFNR  639 (683)
T ss_pred             HHHHhhccCCcccccCHHHHHHHHHHHhCCCCCcchhhccccccceecCcccchhHHHHHHHHHhhHHHHHHHhcCCCCH
Confidence            999999975 2   689999999999984444555678889999999  5999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHH
Q psy4038         315 DSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNS  353 (371)
Q Consensus       315 ~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~  353 (371)
                      ++|++||+.||+.|||++|++++++|+||+|+++++++.
T Consensus       640 e~G~rfrd~ILs~GGS~dp~e~f~~frGrep~~dalLr~  678 (683)
T COG0339         640 ETGQRFRDAILSRGGSRDPMELFKAFRGREPSIDALLRH  678 (683)
T ss_pred             HHHHHHHHHHHhccCCcCHHHHHHHHhcCCCChhHHHHh
Confidence            999999999999999999999999999999999777654

>PRK10280 dipeptidyl carboxypeptidase II; Provisional Back     alignment and domain information
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3 Back     alignment and domain information
>PRK10911 oligopeptidase A; Provisional Back     alignment and domain information
>KOG2090|consensus Back     alignment and domain information
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3 Back     alignment and domain information
>KOG2089|consensus Back     alignment and domain information
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24 Back     alignment and domain information
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site Back     alignment and domain information
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases Back     alignment and domain information
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3 Back     alignment and domain information
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family Back     alignment and domain information
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family Back     alignment and domain information
>TIGR00181 pepF oligoendopeptidase F Back     alignment and domain information
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism] Back     alignment and domain information
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases Back     alignment and domain information
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3 Back     alignment and domain information
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01401 Peptidase_M2: Angiotensin-converting enzyme This Prosite motif covers only the active site Back     alignment and domain information
>KOG3690|consensus Back     alignment and domain information
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily Back     alignment and domain information
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism] Back     alignment and domain information
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family Back     alignment and domain information
>cd00203 ZnMc Zinc-dependent metalloprotease Back     alignment and domain information
>smart00235 ZnMc Zinc-dependent metalloprotease Back     alignment and domain information
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function Back     alignment and domain information
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site Back     alignment and domain information
>PF14247 DUF4344: Domain of unknown function (DUF4344) Back     alignment and domain information
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like Back     alignment and domain information
>PRK13267 archaemetzincin-like protein; Reviewed Back     alignment and domain information
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily Back     alignment and domain information
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1 Back     alignment and domain information
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
1i1i_P681 Neurolysin (Endopeptidase 24.16) Crystal Structure 1e-30
2o36_A674 Crystal Structure Of Engineered Thimet Oligopeptida 2e-30
2o3e_A678 Crystal Structure Of Engineered Neurolysin With Thi 3e-30
1s4b_P674 Crystal Structure Of Human Thimet Oligopeptidase Le 4e-30
1y79_1680 Crystal Structure Of The E.Coli Dipeptidyl Carboxyp 6e-27
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure Length = 681 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 5/333 (1%)
Query: 15  WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
           WD+ Y   + +  K  +       YF +    EGL +++ ++ G++ + V   +  +W+ 
Sbjct: 336 WDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSFEQVP--DAHVWNK 393
Query: 75  DVYKLAVTHEKEG-LLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNL 133
            V    V  +  G +LG  Y D + R+ K N    F ++ G  L +GS    +  L++N 
Sbjct: 394 SVSLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSRMMSVAALVVNF 453
Query: 134 PTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFA 193
             P    P LL    V   FHE GH MH + A+TD+   +GT   TDF EVPS ++E + 
Sbjct: 454 SQPVAGRPSLLRHDEVRTYFHEFGHVMHQICAQTDFARFSGTNVETDFVEVPSQMLENWV 513
Query: 194 SDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNT 253
            D   ++  +KHY  G P+ +E+L+    S+ +        Q+  S +D   H++   + 
Sbjct: 514 WDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNATLDA 573
Query: 254 FQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASW-IWQSYFEKDPF 312
             +  +      G+     T     F HL G     Y   L   V S  ++ S F+K+  
Sbjct: 574 ASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFHSCFKKEGI 633
Query: 313 -SRDSGDAYRLNCLSHGGGKPASKLVSDFLQKD 344
            + + G  YR   L  GG      ++ +FLQ++
Sbjct: 634 MNPEVGMKYRNLILKPGGSLDGMDMLQNFLQRE 666
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With Neurolysin Specificity In Neurotensin Cleavage Site Length = 674 Back     alignment and structure
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet Oligopeptidase Specificity For Neurotensin Cleavage Site Length = 678 Back     alignment and structure
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase Length = 674 Back     alignment and structure
>pdb|1Y79|1 Chain 1, Crystal Structure Of The E.Coli Dipeptidyl Carboxypeptidase Dcp In Complex With A Peptidic Inhibitor Length = 680 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
2o36_A674 ThiMet oligopeptidase; thermolysin-like domain, su 2e-82
2o3e_A678 Neurolysin; thermolysin-like domain, substrate-bin 4e-82
1y79_1680 Peptidyl-dipeptidase DCP; hinge bending, carboxype 2e-63
3ahn_A564 Oligopeptidase, PZ peptidase A; hydrolase, hydrola 9e-10
3sks_A567 Putative oligoendopeptidase F; structural genomics 2e-09
2qr4_A587 Peptidase M3B, oligoendopeptidase F; structural ge 5e-05
3ce2_A618 Putative peptidase; structural genomics, unknown f 6e-05
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P Length = 674 Back     alignment and structure
 Score =  263 bits (674), Expect = 2e-82
 Identities = 82/339 (24%), Positives = 144/339 (42%), Gaps = 5/339 (1%)

Query: 15  WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
           WD+ Y  N+ +  +  +       YF +     GL  ++ ++ G+            W  
Sbjct: 320 WDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAF--HHEEGASAWHE 377

Query: 75  DVYKLAVTHEKEG-LLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNL 133
           DV          G ++G  Y D + R+ K      F ++ G    +GS Q  I  ++ N 
Sbjct: 378 DVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFGLQPGCLRQDGSRQIAIAAMVANF 437

Query: 134 PTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFA 193
             P   +P LL    V   FHE GH MH + ++ ++   +GT   TDF E PS ++E + 
Sbjct: 438 TKPTADAPSLLQHDEVRTYFHEFGHVMHQLCSQAEFAMFSGTHVETDFVEAPSQMLENWV 497

Query: 194 SDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNT 253
            +   +   ++HY  G  +P E+L+    S++         Q+  + +D   H+    + 
Sbjct: 498 WEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDADP 557

Query: 254 FQQLKECQNTYYGIPYIEHTAWQHRFSHLV-GYGAKYYSYLLSRAVASWIWQSYFEKDP- 311
            ++         G+P    T     F HL  GY A+YY YL S   +  ++ + F+++  
Sbjct: 558 AEEYARLCQEILGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGV 617

Query: 312 FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESL 350
            +   G  YR   L  GG + AS ++  FL +D   ++ 
Sbjct: 618 LNSKVGMDYRSCILRPGGSEDASAMLRRFLGRDPKQDAF 656
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P Length = 678 Back     alignment and structure
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli} Length = 680 Back     alignment and structure
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A Length = 564 Back     alignment and structure
>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis} Length = 567 Back     alignment and structure
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein ST initiative; 2.50A {Enterococcus faecium} Length = 587 Back     alignment and structure
>3ce2_A Putative peptidase; structural genomics, unknown function, P protein structure initiative; 2.60A {Chlamydophila abortus} Length = 618 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
2o3e_A678 Neurolysin; thermolysin-like domain, substrate-bin 100.0
1y79_1680 Peptidyl-dipeptidase DCP; hinge bending, carboxype 100.0
2o36_A674 ThiMet oligopeptidase; thermolysin-like domain, su 100.0
3ahn_A564 Oligopeptidase, PZ peptidase A; hydrolase, hydrola 100.0
3ce2_A618 Putative peptidase; structural genomics, unknown f 100.0
3sks_A567 Putative oligoendopeptidase F; structural genomics 100.0
2qr4_A587 Peptidase M3B, oligoendopeptidase F; structural ge 100.0
1r42_A615 Angiotensin I converting enzyme 2; zinc metallopep 99.95
1uze_A589 Angiotensin converting enzyme; metalloprotease, in 99.95
1ka2_A499 M32 carboxypeptidase; hexxh motif, M32 family, met 99.71
3nxq_A629 Angiotensin-converting enzyme; dicarboxy zinc meta 99.68
3hq2_A501 Bacillus subtilis M32 carboxypeptidase; hydrolase, 99.57
2x96_A598 Angiotensin converting enzyme; hydrolase, ACE inhi 99.49
3hoa_A509 Thermostable carboxypeptidase 1; proline-rich loop 99.44
3dwc_A505 TCMCP-1, metallocarboxypeptidase; cowrin family of 99.43
1hv5_A165 Stromelysin 3; inhibition, phosphinic inhibitor, h 92.12
830c_A168 MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 90.25
4axq_A163 Archaemetzincin; metalloprotease, protease, hydrol 88.22
2x7m_A195 Archaemetzincin; metalloprotease, protease, hydrol 86.87
1kap_P479 Alkaline protease; calcium binding protein, zinc m 85.26
3ma2_D181 Matrix metalloproteinase-14; protein - protein com 84.52
1g9k_A463 Serralysin; beta jelly roll, hydrolase; 1.96A {Pse 81.35
2jsd_A160 Matrix metalloproteinase-20; MMP-NNGH, structural 81.34
2xs4_A167 Karilysin protease; hydrolase, bacterial MMP, viru 80.04
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P Back     alignment and structure
Probab=100.00  E-value=1e-84  Score=686.30  Aligned_cols=341  Identities=26%  Similarity=0.495  Sum_probs=323.0

Q ss_pred             CcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEEEe-CCCCcc
Q psy4038          11 GYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTH-EKEGLL   89 (371)
Q Consensus        11 ~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v~~-~~~~~l   89 (371)
                      +|.|||+.||.++.++.++++|+++|++|||+++|++|++.+++++||++|+++.  ++++|||||++|+|+| ++|+++
T Consensus       332 ~l~~wD~~yy~~~~~~~~~~~de~~l~~YF~l~~v~~gv~~~~~~lfG~~~~~~~--~~~~wh~dV~~f~v~d~~~g~~~  409 (678)
T 2o3e_A          332 KINAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSFEQVP--DAHVWNKSVSLYTVKDKATGEVL  409 (678)
T ss_dssp             SCCHHHHHHHHHHHHHHHTCCCHHHHGGGCBHHHHHHHHHHHHHHHHTEEEEECT--TCCCSSTTCEEEEEEETTTCCEE
T ss_pred             CCCHhhHHHHHHHHHHhhcCCChHHhcccCcHHHHHHHHHHHHHHHcCCeEEECC--CCCCCCCcceEEEEEEcCCCCeE
Confidence            7999999999999999999999999999999999999999999999999999985  5789999999999999 688999


Q ss_pred             cceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhhhccCC
Q psy4038          90 GYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDY  169 (371)
Q Consensus        90 G~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~~~~  169 (371)
                      |.+|+|+++|+||++||||+++++++...+|.++.|+++|+|||++|++++|+||+++||.|||||||||||+++++++|
T Consensus       410 g~~y~D~~~R~gKr~Ga~~~~~~~~~~~~~~~~~~Pv~~i~~Nf~~p~~~~p~Llt~~dV~TLfHE~GHalH~~ls~~~~  489 (678)
T 2o3e_A          410 GQFYLDLYPREGKYNHAACFGLQPGCLLPDGSRMMSVAALVVNFSQPVAGRPSLLRHDEVETYFHEFGHVMHQICAQTDF  489 (678)
T ss_dssp             EEEEEECSCCTTSCCSCEEEEEECCBBCTTSCBCCEEEEEECCCCCCBTTBCCBCCHHHHHHHHHHHHHHHHHHHCCBSS
T ss_pred             EEEEeeccCCCCCCCCceecccccccccCCCCccCCeEEEEcccCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999988888888899999999999999999999999999999999999999999999999


Q ss_pred             CcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhccCC
Q psy4038         170 QHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSE  249 (371)
Q Consensus       170 ~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~~D~~lH~~~  249 (371)
                      ++++|+++++|+||+|||+||+|+|+|++|+.+++|++||+++|+++++++++++++++++.+++|+.++.||+.+|...
T Consensus       490 ~~~~gt~~~~d~vE~pS~~~E~~~~~~~~L~~~~~h~~t~e~~p~~ll~~~~~~~~~~~~~~~~~q~~~a~fD~~~h~~~  569 (678)
T 2o3e_A          490 ARFSGTNVERDFVEVPSQMLENWVWDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNA  569 (678)
T ss_dssp             GGGSTTCSCTTTTTHHHHHHHGGGGCHHHHHHHCCCSSSCCCCCHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             hhcCCCCCcchHHhhhHHHHHHHHcCHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999899999999999999999999999865


Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCcccccccccc-ccCccchhHHHHHHHHHHHH-HHHHhhCCCChHHHHHHHHHHhcC
Q psy4038         250 VTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLV-GYGAKYYSYLLSRAVASWIW-QSYFEKDPFSRDSGDAYRLNCLSH  327 (371)
Q Consensus       250 ~~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~-~Y~a~YYsYl~s~v~A~~i~-~~~~~~~~~~~~~g~~yr~~iL~~  327 (371)
                      +.++.++|.++.+++++.+..++..|.++|+||| ||+++||+|+||+++|+++| +.|.+++.+|+++|++||++||++
T Consensus       570 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~Hif~gY~a~YYsY~~a~vlaa~~~~~~f~~~g~~~~~~g~~y~~~iL~~  649 (678)
T 2o3e_A          570 TLDAASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFHSCFKKEGIMNPEVGMKYRNLILKP  649 (678)
T ss_dssp             TSCHHHHHHHHHHHHTSSCCCTTCCGGGGCTTSSSSCTTCTTHHHHHHHHHHHHHHHTHHHHCTTCHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCCccchhhhhcCCcCCcHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhc
Confidence            5789999999999998877666555556999998 79999999999999999999 777667779999999999889999


Q ss_pred             CCCccHHHHHHHHhCCCCChHHHHHH
Q psy4038         328 GGGKPASKLVSDFLQKDITAESLTNS  353 (371)
Q Consensus       328 Ggs~~~~ell~~~lGr~p~~~a~~~~  353 (371)
                      |||++|.+++++|+|+||++++|++.
T Consensus       650 GGs~~~~el~~~f~G~d~~~~a~l~~  675 (678)
T 2o3e_A          650 GGSLDGMDMLQNFLQREPNQKAFLMS  675 (678)
T ss_dssp             GGGSCHHHHHHHHHTSCCCSHHHHHH
T ss_pred             CCCcCHHHHHHHHhCCCCChHHHHHH
Confidence            99999999999999999999998865
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli} Back     alignment and structure
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P Back     alignment and structure
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A Back     alignment and structure
>3ce2_A Putative peptidase; structural genomics, unknown function, P protein structure initiative; 2.60A {Chlamydophila abortus} Back     alignment and structure
>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis} Back     alignment and structure
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein ST initiative; 2.50A {Enterococcus faecium} Back     alignment and structure
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A Back     alignment and structure
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor, enalaprilat, zinc dependant peptidase, anti-hypertensive drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB: 1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A* 2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A* Back     alignment and structure
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A Back     alignment and structure
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase, hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4 NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A* 2c6n_A* 2c6f_A* Back     alignment and structure
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} SCOP: d.92.1.0 Back     alignment and structure
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A {Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A* 2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A* 2x95_A* 1j36_A* 1j37_A* 1j38_A Back     alignment and structure
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase; 2.10A {Thermus thermophilus HB27} SCOP: d.92.1.0 PDB: 1wgz_A Back     alignment and structure
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypept carboxypeptidase, hydrolase; 2.10A {Trypanosoma cruzi} Back     alignment and structure
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11 Back     alignment and structure
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ... Back     alignment and structure
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A* Back     alignment and structure
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri} Back     alignment and structure
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A Back     alignment and structure
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M Back     alignment and structure
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P Back     alignment and structure
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens} Back     alignment and structure
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 371
d1s4bp_654 d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thi 2e-84
d1i1ip_665 d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thi 1e-82
d2ajfa1597 d.92.1.5 (A:19-615) Angiotensin converting enzyme 6e-14
d1uzea_579 d.92.1.5 (A:) Angiotensin converting enzyme, ACE { 3e-10
d1j36a_598 d.92.1.5 (A:) Angiotensin converting enzyme, ACE { 2e-06
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]} Length = 654 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Neurolysin (endopeptidase 24.16, thimet oligopeptidase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  267 bits (683), Expect = 2e-84
 Identities = 81/339 (23%), Positives = 144/339 (42%), Gaps = 5/339 (1%)

Query: 15  WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
           WD+ Y  N+ +  +  +       YF +     GL  ++ ++ G+            W  
Sbjct: 312 WDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFH--HEEGASAWHE 369

Query: 75  DVYKLAVTHEKEG-LLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNL 133
           DV          G ++G  Y D + R+ K      F ++ G    +GS Q  I  ++ N 
Sbjct: 370 DVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFGLQPGCLRQDGSRQIAIAAMVANF 429

Query: 134 PTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFA 193
             P   +P LL    V+  FHE GH MH + ++ ++   +GT    DF E PS ++E + 
Sbjct: 430 TKPTADAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAMFSGTHVERDFVEAPSQMLENWV 489

Query: 194 SDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNT 253
            +   +   ++HY  G  +P E+L+    S++         Q+  + +D   H+    + 
Sbjct: 490 WEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDADP 549

Query: 254 FQQLKECQNTYYGIPYIEHTAWQHRFSHLV-GYGAKYYSYLLSRAVASWIWQSYFEKD-P 311
            ++         G+P    T     F HL  GY A+YY YL S   +  ++ + F+++  
Sbjct: 550 AEEYARLCQEILGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGV 609

Query: 312 FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESL 350
            +   G  YR   L  GG + AS ++  FL +D   ++ 
Sbjct: 610 LNSKVGMDYRSCILRPGGSEDASAMLRRFLGRDPKQDAF 648
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 665 Back     information, alignment and structure
>d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2 {Human (Homo sapiens) [TaxId: 9606]} Length = 597 Back     information, alignment and structure
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human (Homo sapiens) [TaxId: 9606]} Length = 579 Back     information, alignment and structure
>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 598 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
d1s4bp_654 Neurolysin (endopeptidase 24.16, thimet oligopepti 100.0
d1i1ip_665 Neurolysin (endopeptidase 24.16, thimet oligopepti 100.0
d2ajfa1597 Angiotensin converting enzyme 2, ACE2 {Human (Homo 100.0
d1uzea_579 Angiotensin converting enzyme, ACE {Human (Homo sa 99.97
d1j36a_598 Angiotensin converting enzyme, ACE {Fruit fly (Dro 99.96
d1k9xa_497 Thermostable carboxypeptidase 1 {Archaeon Pyrococc 99.46
d1kapp2246 Metalloprotease {Pseudomonas aeruginosa [TaxId: 28 94.78
d1k7ia2241 Metalloprotease {Erwinia chrysanthemi [TaxId: 556] 93.36
d1hy7a_168 Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro 92.45
d1hfca_157 Fibroblast collagenase (MMP-1) {Human (Homo sapien 92.4
d1g9ka2242 Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId 92.3
d1y93a1158 Macrophage elastase (MMP-12) {Human (Homo sapiens) 92.18
d1mmqa_166 Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9 92.12
d1sata2243 Metalloprotease {Serratia marcescens [TaxId: 615]} 92.01
d1rm8a_169 Matrix metalloproteinase-16 (MMP-16) {Human (Homo 91.78
d1hv5a_162 Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI 91.58
d1qiba_161 Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} 91.07
d1i76a_163 Neutrophil collagenase (MMP-8) {Human (Homo sapien 90.97
d1j7na2223 Anthrax toxin lethal factor, N- and C-terminal dom 90.44
d1xuca1169 Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxI 89.75
d1bqqm_174 Membrane-type matrix metalloproteinase (CDMT1-MMP) 89.3
d2ovxa1159 Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 84.13
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Neurolysin (endopeptidase 24.16, thimet oligopeptidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-96  Score=766.78  Aligned_cols=343  Identities=24%  Similarity=0.463  Sum_probs=329.7

Q ss_pred             CCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEEEeC-CCC
Q psy4038           9 KKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHE-KEG   87 (371)
Q Consensus         9 ~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v~~~-~~~   87 (371)
                      .++|+|||++||++++|++++++|++++++|||+++|++||+.++++||||+|+++++  .++|||||++|+|+|+ +|+
T Consensus       306 ~~~l~pWD~~yy~~k~r~~~~~~d~~~l~~YF~l~~vl~Glf~l~~~Lfgi~f~~~~~--~~~wh~dV~~~eV~d~~~~~  383 (654)
T d1s4bp_         306 DGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEG--ASAWHEDVRLYTARDAASGE  383 (654)
T ss_dssp             CSSCCTTTHHHHHHHHHHHHTCCCHHHHHTTCBHHHHHHHHHHHHHHHHTEEEEECTT--CCCSSTTCEEEEEEETTTCC
T ss_pred             cCCCChhhHHHHHhhhhhcccccchHhhhhcchHHHHHHHHHHHHHHHhceeeeeccc--CccCCCceeEEEEEECCCCc
Confidence            4679999999999999999999999999999999999999999999999999999854  5799999999999995 457


Q ss_pred             cccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhhhcc
Q psy4038          88 LLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLART  167 (371)
Q Consensus        88 ~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~~  167 (371)
                      +||+||+|+|+|+||++|+||+++++++...+|.+|.|+++++|||++|++++|++|+|++|.||||||||+||++|+++
T Consensus       384 ~lG~~YlDl~~R~~K~~~a~~~~~~~~~~~~~~~~q~Pv~~lvcNf~~p~~~~p~lLs~~ev~TlFHEfGHalH~ll~~~  463 (654)
T d1s4bp_         384 VVGKFYLDLYPREGKYGHAACFGLQPGCLRQDGSRQIAIAAMVANFTKPTADAPSLLQHDEVETYFHEFGHVMHQLCSQA  463 (654)
T ss_dssp             EEEEEEEECSCCTTSCSSCEEEEEECCEECTTSCEECEEEEEECCCCCCBTTBCCBCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             EEEEEeeccccCccccCCCeecccccceecccccccCCeEEEEeecCCCCCCCCceecHHHhhhHHHHHHHHHHHHhccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhcc
Q psy4038         168 DYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHS  247 (371)
Q Consensus       168 ~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~~D~~lH~  247 (371)
                      +|+++|||++++||||+||||||+|+|+|++|+.+++|++||++||+++++++++++++++++.+.+|+.+|++|+.+|+
T Consensus       464 ~y~~~sGt~~~~DfvE~pSql~E~~~~~~~vL~~~a~h~~tge~lp~~l~~~~~~~~~~~~~~~~~~ql~~a~~D~~lH~  543 (654)
T d1s4bp_         464 EFAMFSGTHVERDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHT  543 (654)
T ss_dssp             SSGGGSTTCSCTTTTTHHHHHHHGGGGSHHHHHHTCCCTTTCCCCCHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccHHHHHHHHHHHHHhccCChHHHhcccccCCCCCCCcHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhcCCCCCCCCcccccccccc-ccCccchhHHHHHHHHHHHHHHHH-hhCCCChHHHHHHHHHHh
Q psy4038         248 SEVTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLV-GYGAKYYSYLLSRAVASWIWQSYF-EKDPFSRDSGDAYRLNCL  325 (371)
Q Consensus       248 ~~~~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~-~Y~a~YYsYl~s~v~A~~i~~~~~-~~~~~~~~~g~~yr~~iL  325 (371)
                      ..+.++.++++++.+++.++|.++++.|+++|+||+ ||+|+||||+||+|+|+|+|+.+| ++|++|+++|++||++||
T Consensus       544 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~Hl~~gY~a~YYsYlws~vlaad~~~~~F~~~g~~~~~~G~~~r~~iL  623 (654)
T d1s4bp_         544 QTDADPAEEYARLCQEILGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNSKVGMDYRSCIL  623 (654)
T ss_dssp             CSSCCHHHHHHHHHHHTTSSCCCTTCCGGGGCGGGGTTCTTTTTHHHHHHHHHHHHHHHTHHHHCTTCHHHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHHHhcCCCCCCCCCCCCcCccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence            877889999999999999999989999999999999 699999999999999999998755 567999999999999999


Q ss_pred             cCCCCccHHHHHHHHhCCCCChHHHHHH
Q psy4038         326 SHGGGKPASKLVSDFLQKDITAESLTNS  353 (371)
Q Consensus       326 ~~Ggs~~~~ell~~~lGr~p~~~a~~~~  353 (371)
                      ++|||+||++++++|+||+|+++||++.
T Consensus       624 ~~Ggs~~~~e~~~~f~Gr~p~~~a~l~~  651 (654)
T d1s4bp_         624 RPGGSEDASAMLRRFLGRDPKQDAFLLS  651 (654)
T ss_dssp             TTGGGSCHHHHHHHHHSSCCCSHHHHHH
T ss_pred             ccCCCcCHHHHHHHhcCCCCChhHHHHh
Confidence            9999999999999999999999998874
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]} Back     information, alignment and structure
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]} Back     information, alignment and structure
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j7na2 d.92.1.14 (A:551-773) Anthrax toxin lethal factor, N- and C-terminal domains {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure