Psyllid ID: psy4065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAGMGGELQMPLFAASLMPEISMSSGGSGNSSPRVKKEGDDGSEDPMEVELPPPEASSSPLNRPAAPAALTALGGIPLAVREKLMRPVIPRERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDPPPSSRNKQVPTYYLLKLLSKTPMLGVTVKPYQS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEccccHHHHHHHHHcccccccccccccccccccccEEccccHHHHHHHHcccccccccccccccHHEEcccccccccccccccEEEcccccEEcccccccccccccccEccccHHHHHHHHHccccccccccccccccccccccEccccHHHHHHHHcccccccccccccccEccccccEEEEEEEEcccccccccccccccccccHHHHHHHHcccccccccccccccEcccEccccccccccccccccEccccHHHHHHHHccccccccccccccccccEccccHHHHHHHHHccccccccccccccccEccccHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
idvvrpfqcdvcnqgfvrkehLVRHrkrahdldppegaeakpfscsvcgktftrreHLRRHQQIHARELLQSSMDMSaltglaeevfptplrldeNVRRWVACQriegidvvrpfqcdvcnqgfvrkehLVRHrkrahdldppegaeakpfscsvcgktftrreHLRRHQQIHARELLQSSMDMSALTglagmggelqmPLFAaslmpeismssggsgnssprvkkegddgsedpmevelpppeasssplnrpaaPAALTAlggiplavreklmrpviprerppkpipkcdvckkvFSRRSHLLRHLKrlhnidpppssrnkqvpTYYLLKLLsktpmlgvtvkpyqs
Flexible Loop (DISEMBL)
idvvrpfqcdvcnqgfvrkehlvrhrkrahdldppegaeakpfscsvCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRiegidvvrpfqcDVCNQgfvrkehlvrhrkrahdldppegaeakpfscsvCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAGMGGELQMPLFAASLMPEISMssggsgnssprvKKEGDDGSEDPMEVELPPPEASSSPLNRPAAPAALTALGGIPLAVREKLMrpviprerppkpipkcdvcKKVFSRRSHLLRHlkrlhnidpppssrnkqVPTYYLLKllsktpmlgvtvkpyqs
Low Complexity Region (SEG)
IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAGMGGELQMPLFAASLMPEIsmssggsgnssPRVKKEGDDGSEDPMEVelpppeasssplnrpaapaaltalggiplaVREKLMrpviprerppkpipkCDVCKKVFsrrshllrhlkrlhNIDPPPSSRNKQVPTYYLLKLLSKTPMLGVTVKPYQS
Disordered region (IsUnstruct)
***VRPFQCDVCNQGFVRKEHLVR******************FSCSVCGKTFTRREHL*****I************SALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVR******************FSCSVCGKTFTRR***********************************************************************************************LTALGGIPLAVREKLMR***********IPKCDVCKKVFSRRSHLLRHLKRL*************VPTYYLLKLLSKTPMLGVT******
Disordered Region (DISOPRED)
IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAGMGGELQMPLFAASLMPEISMSSGGSGNSSPRVKKEGDDGSEDPMEVELPPPEASSSPLNRPAAPAALTALGGIPLAVREKLMRPVIPRERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDPPPSSRNKQVPTYYLLKLLSKTPMLGVTVKPY**
Disordered Region (DISEMBL)
IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAGMGGELQMPLFAASLMPEIS****************************************RPAAPAALTALGGIPLAVREKLMRPVIPRERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDPPPSSRNKQVPTYYLLKLLSKTPMLGVTVKPYQS
Disordered Region (DISPRO)
**VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAGMGGELQMPLFAASLMPEISMSSGGSGNSSPRVKKEGDDGSEDPMEVELPPPEASSSPLNRPAAPAALTALGGIPLAVREKLMRPVIPRERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDPPPSSRNKQVPTYYLLKLLSKTPMLGV*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAGMGGELQMPLFAASLMPEISMSSGGSGNSSPRVKKEGDDGSEDPMEVELPPPEASSSPLNRPAAPAALTALGGIPLAVREKLMRPVIPRERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDPPPSSRNKQVPTYYLLKLLSKTPMLGVTVKPYQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q9Y2Q1	563	Zinc finger protein 257 O	yes	N/A	0.778	0.481	0.264	3e-18
Q5RJR4	594	Zinc finger protein 467 O	no	N/A	0.474	0.277	0.330	6e-17
O95125	648	Zinc finger protein 202 O	no	N/A	0.448	0.240	0.336	6e-17
Q9Y2H8	683	Zinc finger protein 510 O	no	N/A	0.396	0.202	0.308	1e-16
P18733	606	Gastrula zinc finger prot	N/A	N/A	0.422	0.242	0.322	1e-16
Q9C0F3	470	Zinc finger protein 436 O	no	N/A	0.433	0.321	0.306	2e-16
Q5R5Y7	470	Zinc finger protein 436 O	no	N/A	0.433	0.321	0.306	2e-16
Q9P2F9	582	Zinc finger protein 319 O	no	N/A	0.468	0.280	0.322	3e-16
Q8NHY6	868	Zinc finger protein 28 ho	no	N/A	0.393	0.157	0.315	4e-16
Q8BPP0	452	Zinc finger protein 436 O	no	N/A	0.433	0.334	0.306	5e-16

>sp|Q9Y2Q1|ZN257_HUMAN Zinc finger protein 257 OS=Homo sapiens GN=ZNF257 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 135/329 (41%), Gaps = 58/329 (17%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P++C+ C + F R  HL +H K  H  +       KP+ C  CGK F R  H+ +H++I
Sbjct: 227 KPYKCEECGKAFNRSSHLTQH-KVIHTRE-------KPYKCEECGKAFNRSSHITQHKRI 278

Query: 65  HAR-------ELLQSSMDMSALTGLAE----EVFPTPLRLDENVRRWVACQRIEGIDVV- 112
           H R       E  ++    SALT L +         P + +E  + +     +    ++ 
Sbjct: 279 HNREKPFKYDECCKAFKWSSALTTLTQHKRIHTGEKPYKCEECGKAFNQSSALTRHKMIH 338

Query: 113 ---RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
              +PFQC+ C + F R  HL +H K  H        + KP+ C  CGK F R  HL +H
Sbjct: 339 TGEKPFQCEECGKAFNRSSHLTQH-KIIH-------TKEKPYKCEECGKAFNRSSHLTKH 390

Query: 170 QQIHARE-LLQSSMDMSALTGLAGMGGELQMPLFAASLMPEISMSSGGSGN-SSPRVKKE 227
           ++IH RE   +      A    + +    Q  +      P      G + N SS  ++ +
Sbjct: 391 KRIHTREKAYKCDEYCKAFNWSSALTTLTQHKIIHTGEKPYKCEECGKAFNRSSYLIRHK 450

Query: 228 GDDGSEDPMEVELPPPEASSSPLNRPAAPAALTALGGIPLAVREKLMRPVIPRERPPKPI 287
                E P + E      + S        + LT    I               E+P    
Sbjct: 451 IIHTGEKPYKCEECGKAFNQS--------SHLTQHKIIHTG------------EKP---- 486

Query: 288 PKCDVCKKVFSRRSHLLRHLKRLHNIDPP 316
            KC+ C K F+R SHL +H K +H  + P
Sbjct: 487 YKCEECGKAFNRSSHLSQH-KIIHTGEKP 514

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|Q5RJR4|ZN467_RAT Zinc finger protein 467 OS=Rattus norvegicus GN=Znf467 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 95/215 (44%), Gaps = 50/215 (23%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDL--------------DPPEGAEA------KPFS 44
           RP+QC  C + F  K+HLVRH +R HD                PP  + A      KPF+
Sbjct: 298 RPYQCTQCTRSFTHKQHLVRH-QRVHDAASRTRSSPDIPATPHPPTASLAPSPTGPKPFA 356

Query: 45  CSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTG----LAEEVFPTPLRLDENVRRW 100
           CS CG++F  +++L  HQ +H  E      D  AL       AE    TP   D      
Sbjct: 357 CSHCGQSFGWKKNLATHQSLHLTEGRPFGCDECALGTNVDPAAEPSACTPHAPDCGPGSG 416

Query: 101 -VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG-------------- 145
            VA QR    +  R F C  C +GF   +HL RHR R H  + P                
Sbjct: 417 PVAPQRTTSSE--RSFFCPDCGRGFAHGQHLARHR-RVHTGERPFACAQCGRRFGSRPNL 473

Query: 146 -------AEAKPFSCSVCGKTFTRREHLRRHQQIH 173
                  + A+PF+C+ CG+ F+R+ HL RHQ +H
Sbjct: 474 VAHSRAHSGARPFACAQCGRRFSRKSHLGRHQAVH 508

Transcription factor that promotes adipocyte differentiation and suppresses osteoblast differentiation in the bone marrow. Enhances the osteoclast-supporting ability of stromal cells. Binds with STAT3 the consensus sequence 5'-CTTCTGGGAAGA-3' of the acute phase response element (APRE). Transactivates several promoters including FOS, OSM and PPARG. Recruits a histone deacetylase complex.

Rattus norvegicus (taxid: 10116)

>sp|O95125|ZN202_HUMAN Zinc finger protein 202 OS=Homo sapiens GN=ZNF202 PE=1 SV=4

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 93/184 (50%), Gaps = 28/184 (15%)

Query: 3   VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
           V +P++CD C + F     LVRH +R H  +       KPF C++CGK+F+++  L  HQ
Sbjct: 477 VEKPYRCDDCGKHFRWTSDLVRH-QRTHTGE-------KPFFCTICGKSFSQKSVLTTHQ 528

Query: 63  QIH--ARELL--QSSMDMSA--------LTGLAEEVFPTPLRLDENVRRWVACQRIEGID 110
           +IH   +  L  +   D S          T  AEE++                + + G  
Sbjct: 529 RIHLGGKPYLCGECGEDFSEHRRYLAHRKTHAAEELYLCSECGRCFTHSAAFAKHLRGHA 588

Query: 111 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
            VRP +C+ C + F R++HLVRH +R H  +       KPF+C  CGK+F+R  HL RHQ
Sbjct: 589 SVRPCRCNECGKSFSRRDHLVRH-QRTHTGE-------KPFTCPTCGKSFSRGYHLIRHQ 640

Query: 171 QIHA 174
           + H+
Sbjct: 641 RTHS 644

Transcriptional repressor that binds to elements found predominantly in genes that participate in lipid metabolism. Among its targets are structural components of lipoprotein particles (apolipoproteins AIV, CIII, and E), enzymes involved in lipid processing (lipoprotein lipase, lecithin cholesteryl ester transferase), transporters involved in lipid homeostasis (ABCA1, ABCG1), and several genes involved in processes related to energy metabolism and vascular disease.

Homo sapiens (taxid: 9606)

>sp|Q9Y2H8|ZN510_HUMAN Zinc finger protein 510 OS=Homo sapiens GN=ZNF510 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 40/178 (22%)

Query: 3   VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
           +++P++C+ C + F +K HL++H+ R H  +       KPF CS CGKTF+++ HL  HQ
Sbjct: 400 MMKPYKCNECGKSFCQKGHLIQHQ-RTHTGE-------KPFECSECGKTFSQKSHLSTHQ 451

Query: 63  QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVV----RPFQCD 118
           +IH  E                     P + +E  + +V    + G   +    +P++C 
Sbjct: 452 RIHTAE--------------------KPYKCNECGKTFVQKSTLRGHQRIHTGEKPYECS 491

Query: 119 VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
            C + FV+K  L  H    H +   E    K F C+ CGKTF ++ +LR HQ+ H  E
Sbjct: 492 ECGKTFVQKSTLRDH----HRIHTGE----KSFQCNQCGKTFGQKSNLRIHQRTHTGE 541

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P18733|ZG66_XENLA Gastrula zinc finger protein XlCGF66.1 (Fragment) OS=Xenopus laevis PE=2 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 45/192 (23%)

Query: 4   VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ 63
           V+P+ C  C + F    HL+ HR++ H        E K F CS CGK F  +  L RHQ+
Sbjct: 438 VKPYSCSECGKCFASSSHLIGHRQQVH-------MEGKTFFCSECGKYFLYQSQLVRHQR 490

Query: 64  IHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQG 123
            H  E   S  +         + F T  +L       +A Q+   I+V +PF C  C + 
Sbjct: 491 THTGEKPYSCSECG-------KCFATSSQL-------MAHQQQVHIEV-KPFSCSECGKY 535

Query: 124 FVRKEHLVRHRKRAHDLDPPEGA----------------------EAKPFSCSVCGKTFT 161
           F+ + HLVRH+ R H  + P+                        E K FSCS CGK+F 
Sbjct: 536 FLYRAHLVRHQ-RTHTGEKPDFCFECGKCFATSLQLIAHQQQVHMEVKQFSCSECGKSFL 594

Query: 162 RREHLRRHQQIH 173
            R HL RH + H
Sbjct: 595 YRSHLARHHRTH 606

May be involved in transcriptional regulation.

Xenopus laevis (taxid: 8355)

>sp|Q9C0F3|ZN436_HUMAN Zinc finger protein 436 OS=Homo sapiens GN=ZNF436 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 38/189 (20%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P +C+ C + F R  HL++H +R H  +       KP+ C  CGK+F+R  HL +HQ+ 
Sbjct: 220 KPHKCNECGKSFCRLSHLIQH-QRTHSGE-------KPYECEECGKSFSRSSHLAQHQRT 271

Query: 65  HA----RELLQSSMDMSALTGLAEE----VFPTPLRLDENVRRWVACQRIEGIDVVR--- 113
           H      E  +     S  + L +         P + DE  + +      +  D+VR   
Sbjct: 272 HTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFS-----QNSDLVRHRR 326

Query: 114 ------PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLR 167
                 P+ C+ C + F R  HLV+H +R H  +       KP+ C+ CGK+F+R  HL 
Sbjct: 327 AHTGEKPYHCNECGENFSRISHLVQH-QRTHTGE-------KPYECNACGKSFSRSSHLI 378

Query: 168 RHQQIHARE 176
            HQ+IH  E
Sbjct: 379 THQKIHTGE 387

May be a transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|Q5R5Y7|ZN436_PONAB Zinc finger protein 436 OS=Pongo abelii GN=ZNF436 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 38/189 (20%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P +C+ C + F R  HL++H +R H  +       KP+ C  CGK+F+R  HL +HQ+ 
Sbjct: 220 KPHKCNECGKSFCRLSHLIQH-QRTHSGE-------KPYECEECGKSFSRSSHLAQHQRT 271

Query: 65  HA----RELLQSSMDMSALTGLAEE----VFPTPLRLDENVRRWVACQRIEGIDVVR--- 113
           H      E  +     S  + L +         P + DE  + +      +  D+VR   
Sbjct: 272 HTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFS-----QNSDLVRHRR 326

Query: 114 ------PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLR 167
                 P+ C+ C + F R  HLV+H +R H  +       KP+ C+ CGK+F+R  HL 
Sbjct: 327 AHTGEKPYHCNECGENFSRISHLVQH-QRTHTGE-------KPYECNACGKSFSRSSHLI 378

Query: 168 RHQQIHARE 176
            HQ+IH  E
Sbjct: 379 THQKIHTGE 387

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q9P2F9|ZN319_HUMAN Zinc finger protein 319 OS=Homo sapiens GN=ZNF319 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 92/208 (44%), Gaps = 45/208 (21%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           RPF+CD+C  GF ++  L+RHR R H  +       +PF C +C K F +  HL  HQ +
Sbjct: 341 RPFKCDLCPMGFKQQYALMRHR-RTHKTE-------EPFKCGLCEKGFGQPSHLLYHQHV 392

Query: 65  HARELL------QSSMDMSA-------LTGLAEEVFPTPLRLDENVRRWVACQRIEGIDV 111
           H  E L      Q   D SA       L G AE  F  P+  ++  +R  A Q+ +    
Sbjct: 393 HTLETLFKCPVCQKGFDQSAELLRHKCLPGAAERPFKCPV-CNKAYKRASALQKHQLAHC 451

Query: 112 V---RPFQCDVCNQGFVRKEHLVRHR------------------KRAHDLDPPEGAEA-- 148
               +P +C +C + F      V+HR                  K A DL          
Sbjct: 452 AAAEKPLRCTLCERRFFSSSEFVQHRCDPAREKPLKCPDCEKRFKYASDLQRHRRVHTGE 511

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C  C K F +REHL +HQ +HARE
Sbjct: 512 KPYKCPNCDKAFKQREHLNKHQGVHARE 539

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8NHY6|ZFP28_HUMAN Zinc finger protein 28 homolog OS=Homo sapiens GN=ZFP28 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 34/171 (19%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P++C VC++ F +K HL +H+K  H  +       KP+ C  CGK F++  HL +HQ++
Sbjct: 643 KPYECKVCSKAFTQKAHLAQHQK-THTGE-------KPYECKECGKAFSQTTHLIQHQRV 694

Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDV-VRPFQCDVCNQG 123
           H  E     M+     G            D +     +C + + +    RP++C  C + 
Sbjct: 695 HTGEKPYKCMECGKAFG------------DNS-----SCTQHQRLHTGQRPYECIECGKA 737

Query: 124 FVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 174
           F  K  L+ HR R+H  +       KP+ CSVCGK F+ R+ L  HQ+IH+
Sbjct: 738 FKTKSSLICHR-RSHTGE-------KPYECSVCGKAFSHRQSLSVHQRIHS 780

May be involved in transcriptional regulation. May have a role in embryonic development.

Homo sapiens (taxid: 9606)

>sp|Q8BPP0|ZN436_MOUSE Zinc finger protein 436 OS=Mus musculus GN=Znf436 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 38/189 (20%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P +C  C + F R  HL++H +R H  +       KP+ C  CGK+F+R  HL +HQ+ 
Sbjct: 202 KPHKCTECGKSFCRLSHLIQH-QRTHSGE-------KPYECEECGKSFSRSSHLAQHQRT 253

Query: 65  HA----RELLQSSMDMSALTGLAEE----VFPTPLRLDENVRRWVACQRIEGIDVVR--- 113
           H      E  +     S  + L +         P + DE  + +      +  D+VR   
Sbjct: 254 HTGEKPYECHECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFS-----QNSDLVRHRR 308

Query: 114 ------PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLR 167
                 P+ C+ C + F R  HLV+H +R H  +       KP+ C+ CGK+F+R  HL 
Sbjct: 309 AHTGEKPYHCNECGENFSRISHLVQH-QRTHTGE-------KPYECTACGKSFSRSSHLI 360

Query: 168 RHQQIHARE 176
            HQ+IH  E
Sbjct: 361 THQKIHTGE 369

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
328701133	620	PREDICTED: zinc finger protein Xfin-like	0.640	0.359	0.354	7e-34
242016732	862	zinc finger protein, putative [Pediculus	0.445	0.179	0.359	2e-25
395528410	488	PREDICTED: zinc finger protein 84-like [	0.442	0.315	0.306	1e-17
334329042	1158	PREDICTED: zinc finger protein 850-like	0.775	0.233	0.262	2e-17
391343532	2083	PREDICTED: uncharacterized protein LOC10	0.393	0.065	0.343	3e-17
345316963	959	PREDICTED: hypothetical protein LOC10008	0.399	0.144	0.344	4e-17
327281852	742	PREDICTED: zinc finger protein 420-like	0.491	0.230	0.359	4e-17
395529171	1270	PREDICTED: zinc finger protein 484-like,	0.439	0.120	0.358	6e-17
4454678	535	zinc finger protein 4 [Homo sapiens]	0.836	0.543	0.258	6e-17
334328922	822	PREDICTED: zinc finger protein 569-like	0.462	0.195	0.302	8e-17

>gi|328701133|ref|XP_003241502.1| PREDICTED: zinc finger protein Xfin-like [Acyrthosiphon pisum]

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 142/319 (44%), Gaps = 96/319 (30%)

Query: 4   VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ 63
           V+P+ C +C  GF RKEHL+RH   +H       +  +PF C  CGK F R+EHL RH  
Sbjct: 312 VKPYVCRICTSGFNRKEHLMRH-MLSH-------STVRPFPCERCGKRFIRKEHLARHL- 362

Query: 64  IHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQG 123
                L   S   S+                               D+ RPF CD+C Q 
Sbjct: 363 -----LCIPSCSNSS-------------------------------DMPRPFCCDICKQR 386

Query: 124 FVRKEHLVRHRKRAHD--LDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
           FVRKEHL RHRKRAH+  L      E KPF C  CGK FTR EHLR+H  IH        
Sbjct: 387 FVRKEHLFRHRKRAHEHALILDNQLEEKPFVCWQCGKCFTRYEHLRKHLDIH-------- 438

Query: 182 MDMSALTGLAGMGGELQMPLFAASLMPEISMSSGGSGNSSPRVKKEGDDGSEDPMEVELP 241
                  G+        +P  +  ++PE+++S      +S  +K E    SE   EV LP
Sbjct: 439 ------NGI--------IPSSSTEILPEVTLSEIKPEETSVDIKTENLSDSEGESEV-LP 483

Query: 242 PPEASSSPLNRPAAPAALTALGGIPLAVREKLMRPVIPRERPPKPIPKCDVCKKVFSRRS 301
           P   S   LN                           P +  PKP   C +CKK FSRRS
Sbjct: 484 P--VSVLELNEQQ------------------------PEQGRPKPSTLCTICKKTFSRRS 517

Query: 302 HLLRHLKRLHNIDPPPSSR 320
           HLLRHLKR+H ++P  + R
Sbjct: 518 HLLRHLKRIHKVEPVLTRR 536

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016732|ref|XP_002428896.1| zinc finger protein, putative [Pediculus humanus corporis] gi|212513668|gb|EEB16158.1| zinc finger protein, putative [Pediculus humanus corporis]

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 26/181 (14%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           + F C VC + F R EHL RH   +H          +PF C +C K FTR+EHL RH+Q 
Sbjct: 271 KKFVCKVCGKAFNRNEHLTRHM-LSH-------TGGRPFQCDLCSKVFTRKEHLVRHRQC 322

Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
           H         D+S +  + EE        D++V  +      +  +  +PF CD+C+  +
Sbjct: 323 H---------DVSGVV-IKEEP-------DDSVNSYGFSDFADATET-KPFVCDICHSAY 364

Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDM 184
            R+EH+ +H+K AH +D    +E KP+ C+ C KTFTR+EHL RH++IH RE    + ++
Sbjct: 365 ARREHMTKHKKVAHGIDADPESEPKPYCCNHCFKTFTRKEHLTRHKKIHIREAFSGNYEI 424

Query: 185 S 185
           +
Sbjct: 425 A 425

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395528410|ref|XP_003766323.1| PREDICTED: zinc finger protein 84-like [Sarcophilus harrisii]

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 58/212 (27%)

Query: 4   VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA--------------------KPF 43
           V+PF+CD+C  GF+RKE+L+ H++    + P +  E                     KPF
Sbjct: 259 VKPFECDICGIGFMRKEYLISHQRIHTGVKPFQCKECGKAFFQKGNLNSHQRIHTGVKPF 318

Query: 44  SCSVCGKTFTRREHLRRHQQIH-ARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVA 102
            CS CGK F ++ +L RHQ+ H   ++L+ +    ALT                 R  ++
Sbjct: 319 ECSECGKAFFQKGNLNRHQRTHTGAKILECNECGKALT---------------TRRTLIS 363

Query: 103 CQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA-------------- 148
            QRI     ++PF C +C + F R+ +L RH+     + P +  E               
Sbjct: 364 HQRIH--PGLKPFDCKICGKAFFRRGNLYRHQTTHTGVKPFKCNECGKAFRQKGQLHSHQ 421

Query: 149 ------KPFSCSVCGKTFTRREHLRRHQQIHA 174
                 KPF CS CGK F R+ HL RHQ+IH 
Sbjct: 422 GTHTGVKPFECSECGKAFFRKAHLNRHQRIHT 453

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334329042|ref|XP_003341172.1| PREDICTED: zinc finger protein 850-like [Monodelphis domestica]

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 134/324 (41%), Gaps = 54/324 (16%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P++C  C + F  +  L +H +R H  +       KP+ C  CGK FT+R HL RHQ+I
Sbjct: 562 KPYECTQCGKAFTGRSDLAKH-QRIHTGE-------KPYECKQCGKAFTQRGHLVRHQRI 613

Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVV----RPFQCDVC 120
           H RE                     P + +EN R ++         ++    RP+QC  C
Sbjct: 614 HTRE--------------------KPYKREENGRPFIQNYEFGSYQIIHSGERPYQCKEC 653

Query: 121 NQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAREL-LQ 179
            + F ++ HLVRH +R H  +       KP+ C+ CGK FT    L RHQ+IH  E   +
Sbjct: 654 GKAFTQRGHLVRH-QRIHSGE-------KPYKCTQCGKAFTESSSLARHQRIHTGEKPYE 705

Query: 180 SSMDMSALTGLAGMGGELQMPLFAASLMPEISMSSGGSGNSSPRVKKEGDDGSEDPME-V 238
            +    A      +    ++ +       E +        +    K +     E P E  
Sbjct: 706 CTQCGKAFIHRESLAAHQRIHIGEKPY--ECTQCGKPFTRTCDLAKHQRIHSGEKPYECT 763

Query: 239 ELPPPEASSSPLNR------PAAPAALTALGGIPLAVREKLMRPVIPRERPPKPIPKCDV 292
           +       S+ L R         P   T  G I    R  L+R    R    + + +C  
Sbjct: 764 QCGKAFTESNSLARHQRIHTGEKPYECTQCGKI-FTQRGDLVRH--QRIHTGEKLYECTQ 820

Query: 293 CKKVFSRRSHLLRHLKRLHNIDPP 316
           C K F++R +L +H +R+H+ + P
Sbjct: 821 CGKAFTQRGNLAKH-QRIHSGEKP 843

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|391343532|ref|XP_003746063.1| PREDICTED: uncharacterized protein LOC100904961 [Metaseiulus occidentalis]

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 82/169 (48%), Gaps = 32/169 (18%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           RPF C  CN+ F RK HL  H  R H  +       +P+ C++CGK F R+EH+ RH +I
Sbjct: 509 RPFSCFTCNKRFSRKVHLESH-IRIHTGE-------RPYVCTLCGKAFGRKEHIERHVRI 560

Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
           H  E        S + G     F   + L+ + R              RPFQC  C + F
Sbjct: 561 HTGE-------RSFMCGSCGRAFSQKVHLENHARVHTG---------ERPFQCVACGKSF 604

Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
            R+E++ RH  R H  +       +PF CS CGK+F ++ H+ RH + H
Sbjct: 605 RRREYMKRHM-RTHTGE-------RPFQCSTCGKSFRQKSHVDRHTRTH 645

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345316963|ref|XP_001517003.2| PREDICTED: hypothetical protein LOC100086965 [Ornithorhynchus anatinus]

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 35/174 (20%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P+ C  C +GF++  H  RH  R+H  +       KP+ C+ CGK+F R EHL RHQ+ 
Sbjct: 293 KPYACPECGKGFLKPAHFSRH-LRSHTGE-------KPYRCAECGKSFGRNEHLIRHQRT 344

Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
           H                L E  F  P      +  W A   +      +P++C  C + F
Sbjct: 345 H----------------LGERPFKFPKCRKSFL--WAA-HPLRHQTREKPYECCQCGKSF 385

Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELL 178
             +EHL+RH+K  H  +       +P+ C  CGK+F RREHL RHQ+ HA E L
Sbjct: 386 YWREHLIRHQK-THTGE-------RPYGCRECGKSFGRREHLIRHQRTHAGEKL 431

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327281852|ref|XP_003225659.1| PREDICTED: zinc finger protein 420-like [Anolis carolinensis]

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 94/203 (46%), Gaps = 32/203 (15%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +PF+C  C +GF++K  L  H            AE KPF C  CGK FTR+  L RHQ+I
Sbjct: 484 KPFKCLECGKGFIQKTGLTNHEATH--------AEEKPFKCLDCGKGFTRKAILTRHQRI 535

Query: 65  HARE----LLQSSMDMSALTGL-------AEEVFPTPLRLDENVRRWVACQRIEGIDV-V 112
           H  E     L+     +  TGL       AEE     L   +   R     R + I    
Sbjct: 536 HTGEKPFKCLECGKGFTQKTGLTNHEATHAEEKPFKCLDCGKGFTRKEILTRHQRIHTGE 595

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +PF+C  C +GF +K  L  H + AH       AE KPF C  CGK FTR+E L RHQ+I
Sbjct: 596 KPFKCLECGKGFTQKMGLTSH-EAAH-------AEEKPFKCLDCGKGFTRKEILTRHQRI 647

Query: 173 HARE----LLQSSMDMSALTGLA 191
           H  E     ++     +  TGL 
Sbjct: 648 HTGEKPFKCVECGKSFTQKTGLT 670

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395529171|ref|XP_003766692.1| PREDICTED: zinc finger protein 484-like, partial [Sarcophilus harrisii]

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 94/187 (50%), Gaps = 34/187 (18%)

Query: 5    RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
            +PF+C+ C + F R  HL  H +R H  +       KPF+C+ CGKTFT+  HL  HQ+I
Sbjct: 1073 KPFECNQCGKTFTRSTHLSTH-QRIHTGE-------KPFNCNQCGKTFTQSSHLAEHQRI 1124

Query: 65   HAREL------------LQSSMDMSALTGLAEEVFPTPLRLDENVRR---WVACQRIEGI 109
            H  E              +S++       + E+VF    +  +  RR    V  QRI   
Sbjct: 1125 HTGEKPFECNQCEKTFRKRSNLVKHQRIHIGEKVFDCN-QCGKAFRRSSHLVKHQRIHSE 1183

Query: 110  DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
            +  +PF C+ C + F RK HL  H +R H  +       KPF C+ CGKTFT+  HL +H
Sbjct: 1184 E--KPFDCNQCGKTFGRKCHLATH-QRIHTGE-------KPFECNECGKTFTQSSHLAQH 1233

Query: 170  QQIHARE 176
            Q+IH  E
Sbjct: 1234 QKIHTGE 1240

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|4454678|gb|AAD20957.1| zinc finger protein 4 [Homo sapiens]

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 138/337 (40%), Gaps = 46/337 (13%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P++C+ C + F R  HL +H K  H  +       KP+ C  CGK F R  H+ +H++I
Sbjct: 199 KPYKCEECGKAFNRSSHLTQH-KVIHTRE-------KPYKCEECGKAFNRSSHITQHKRI 250

Query: 65  HAR-------ELLQSSMDMSALTGLAE----EVFPTPLRLDENVRRWVACQRIEGIDVV- 112
           H R       E  ++    SALT L +         P + +E  + +     +    ++ 
Sbjct: 251 HNREKPFKYDECCKAFKWSSALTTLTQHKRIHTGEKPYKCEECGKAFNQSSALTRHKMIH 310

Query: 113 ---RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
              +PFQC+ C + F R  HL +H K  H        + KP+ C  CGK F R  HL +H
Sbjct: 311 TGEKPFQCEECGKAFNRSSHLTQH-KIIH-------TKEKPYKCEECGKAFNRSSHLTKH 362

Query: 170 QQIHARE-LLQSSMDMSALTGLAGMGGELQMPLFAASLMPEISMSSGGSGN-SSPRVKKE 227
           ++IH RE   +      A    + +    Q  +      P      G + N SS  ++ E
Sbjct: 363 KRIHTREKAYKCDEYCKAFNWSSALTTLTQHKIIHTGEKPYKCEECGKAFNRSSYLIRHE 422

Query: 228 GDDGSEDPMEVELPPPEASSSP-------LNRPAAPAALTALG-GIPLAVREKLMRPVIP 279
                E P + E      + S        ++    P      G     + +    R +  
Sbjct: 423 IIHTGEKPYKCEECGKAFNQSSHLTQHKIIHTGEKPYKCEECGKAFNRSSQPSQHRIIHT 482

Query: 280 RERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDPP 316
            E+P     KC+ C K F+  S+L  H KR+H  + P
Sbjct: 483 GEKP----YKCEECGKAFNTFSYLTVH-KRIHAGENP 514

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334328922|ref|XP_001376354.2| PREDICTED: zinc finger protein 569-like [Monodelphis domestica]

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 44/205 (21%)

Query: 4   VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAE--------------------AKPF 43
           ++PFQCD+C + F+RKE+LV H++    + P E  E                     KPF
Sbjct: 384 MKPFQCDICEKAFIRKEYLVSHQRTHSGVKPFECNECGKAYSQKGNLISHQRVHTGVKPF 443

Query: 44  SCSVCGKTFTRREHLRRHQQIHAR----ELLQSSMDMSALTGLAEE----VFPTPLRLDE 95
            C+ CGK F ++ +L  H++ H+     E  +     +A   L           P   DE
Sbjct: 444 ECNECGKAFNQKGYLISHERTHSGLKPFECEECGKAFTAKRTLINHRRIHTGVKPFGCDE 503

Query: 96  NVRRW------VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAK 149
             + +      ++ QR      V+PF+C  C + F+RK HL  H +R H          K
Sbjct: 504 CGKAFSERGTLISHQRTH--TGVKPFECKECGKAFLRKGHLNSH-QRTH-------TGVK 553

Query: 150 PFSCSVCGKTFTRREHLRRHQQIHA 174
           PF+C+ CGK F+++ HL  HQ+IH 
Sbjct: 554 PFACNECGKAFSQKGHLISHQRIHT 578

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
UNIPROTKB|Q9Y2Q1	563	ZNF257 "Zinc finger protein 25	0.448	0.277	0.326	5.3e-19
UNIPROTKB|J9NYQ6	717	ZNF677 "Uncharacterized protei	0.448	0.217	0.288	1.1e-18
UNIPROTKB|F6XD56	648	ZNF202 "Uncharacterized protei	0.451	0.242	0.336	3.2e-18
ZFIN|ZDB-GENE-070705-205	473	si:ch73-138e16.6 "si:ch73-138e	0.448	0.329	0.320	5.3e-18
UNIPROTKB|O95125	648	ZNF202 "Zinc finger protein 20	0.451	0.242	0.336	6.6e-18
RGD|1310584	393	Zfp46 "zinc finger protein 46"	0.448	0.396	0.298	7.8e-18
UNIPROTKB|E1BMZ4	470	ZNF436 "Uncharacterized protei	0.448	0.331	0.298	8.6e-18
UNIPROTKB|J9NZD8	470	ZNF436 "Uncharacterized protei	0.448	0.331	0.298	8.6e-18
UNIPROTKB|Q9C0F3	470	ZNF436 "Zinc finger protein 43	0.448	0.331	0.298	8.6e-18
UNIPROTKB|I3LJU8	470	ZNF436 "Uncharacterized protei	0.448	0.331	0.298	8.6e-18

UNIPROTKB|Q9Y2Q1 ZNF257 "Zinc finger protein 257" [Homo sapiens (taxid:9606)]

 Score = 236 (88.1 bits), Expect = 5.3e-19, P = 5.3e-19
 Identities = 61/187 (32%), Positives = 90/187 (48%)

Query:     5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
             +P++C+ C + F R  HL +H K  H  +       KP+ C  CGK F R  H+ +H++I
Sbjct:   227 KPYKCEECGKAFNRSSHLTQH-KVIHTRE-------KPYKCEECGKAFNRSSHITQHKRI 278

Query:    65 HARE-------LLQSSMDMSALTGLAEE----VFPTPLRLDENVRRW---VACQRIEGID 110
             H RE         ++    SALT L +         P + +E  + +    A  R + I 
Sbjct:   279 HNREKPFKYDECCKAFKWSSALTTLTQHKRIHTGEKPYKCEECGKAFNQSSALTRHKMIH 338

Query:   111 V-VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
                +PFQC+ C + F R  HL +H K  H        + KP+ C  CGK F R  HL +H
Sbjct:   339 TGEKPFQCEECGKAFNRSSHLTQH-KIIH-------TKEKPYKCEECGKAFNRSSHLTKH 390

Query:   170 QQIHARE 176
             ++IH RE
Sbjct:   391 KRIHTRE 397

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008270 "zinc ion binding" evidence=NAS

GO:0003677 "DNA binding" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

UNIPROTKB|J9NYQ6 ZNF677 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 235 (87.8 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 53/184 (28%), Positives = 93/184 (50%)

Query:     5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
             +P++C+ C++ F+R+ HL  H +R H  +       KP+ C+ CGK F  R +L +H++I
Sbjct:   491 KPYKCNKCDKAFIRRSHLWGH-ERTHTGE-------KPYKCTECGKAFAERSNLTQHRKI 542

Query:    65 HARELLQSSMDMS-ALTGLAEEVFPTPLRLDENVRRWVACQR--IEGIDVV--------- 112
             H  E      +   A T  A       +   E   +   C +  I+   ++         
Sbjct:   543 HTGEKPYKCNECGKAFTQFANLTRHQKIHTGEKPHKCDVCDKAFIQSSSLMEHQRIHTGE 602

Query:   113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
             +P++C++C++ F+++ HL  H +R H  +       KP+ C+ CGK FT R HL +H++I
Sbjct:   603 KPYKCNICDKAFIKRSHLWGH-ERTHTGE-------KPYKCNECGKAFTERSHLTQHKKI 654

Query:   173 HARE 176
             H  E
Sbjct:   655 HTGE 658

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F6XD56 ZNF202 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 230 (86.0 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 63/187 (33%), Positives = 95/187 (50%)

Query:     3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
             V +P++CD C + F     LVRH+ R H  +       KPF C++CGK+F+++  L  HQ
Sbjct:   477 VEKPYRCDDCGKNFRWTSDLVRHQ-RTHTGE-------KPFFCTICGKSFSQKSVLTTHQ 528

Query:    63 QIH--ARELL--QSSMDMS--------ALTGLAEEVFPTPLRLDENVRRWVA-CQRIEGI 109
             +IH   +  L  +   D S          T  AEE++              A  + + G 
Sbjct:   529 RIHLGGKPYLCGECGEDFSDHRRYLAHRKTHAAEELYLCS-ECGRCFNHSAAFAKHLRGH 587

Query:   110 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
               VRP +C+ C + F R++HLVRH+ R H  +       KPF+C  CGK+F+R  HL RH
Sbjct:   588 ASVRPCRCNECGKSFSRRDHLVRHQ-RTHTGE-------KPFTCPTCGKSFSRGYHLIRH 639

Query:   170 QQIHARE 176
             Q+ H+ +
Sbjct:   640 QRTHSEK 646

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016032 "viral reproduction" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-070705-205 si:ch73-138e16.6 "si:ch73-138e16.6" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 59/184 (32%), Positives = 91/184 (49%)

Query:     5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
             +P +CD C++ F++   L  HR R H          KP+SCSVCGK FT  + L+RH+ I
Sbjct:    97 KPHKCDQCSKMFIKASELKDHR-RVH-------TNEKPYSCSVCGKCFTHLQILKRHEVI 148

Query:    65 HA--RELLQSSMDMSALTG--LAEEVF----PTPLRLDENVRRWVACQRIEGIDVV---- 112
             H   +E +  + D + LT   L   +       P +      R+   + ++  + +    
Sbjct:   149 HTGVKEFMCFACDKAFLTAGHLKRHLMIHTGEKPYKCSHCEMRFTRTESMKAHERIHTGE 208

Query:   113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
             +P++C  C+ GF R E L  H +R H  +       KPF CS C  TF+R E L+ H++I
Sbjct:   209 KPYKCSHCDMGFSRSESLKMH-ERIHTGE-------KPFKCSFCIMTFSRSESLKTHERI 260

Query:   173 HARE 176
             H  E
Sbjct:   261 HTGE 264

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|O95125 ZNF202 "Zinc finger protein 202" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 6.6e-18, P = 6.6e-18
 Identities = 63/187 (33%), Positives = 95/187 (50%)

Query:     3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
             V +P++CD C + F     LVRH+ R H  +       KPF C++CGK+F+++  L  HQ
Sbjct:   477 VEKPYRCDDCGKHFRWTSDLVRHQ-RTHTGE-------KPFFCTICGKSFSQKSVLTTHQ 528

Query:    63 QIH--ARELL--QSSMDMSA--------LTGLAEEVFPTPLRLDENVRRWVA-CQRIEGI 109
             +IH   +  L  +   D S          T  AEE++              A  + + G 
Sbjct:   529 RIHLGGKPYLCGECGEDFSEHRRYLAHRKTHAAEELYLCS-ECGRCFTHSAAFAKHLRGH 587

Query:   110 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
               VRP +C+ C + F R++HLVRH+ R H  +       KPF+C  CGK+F+R  HL RH
Sbjct:   588 ASVRPCRCNECGKSFSRRDHLVRHQ-RTHTGE-------KPFTCPTCGKSFSRGYHLIRH 639

Query:   170 QQIHARE 176
             Q+ H+ +
Sbjct:   640 QRTHSEK 646

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016032 "viral reproduction" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

RGD|1310584 Zfp46 "zinc finger protein 46" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 7.8e-18, P = 7.8e-18
 Identities = 55/184 (29%), Positives = 88/184 (47%)

Query:     5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
             +P +C  C + F R  HL++H+ R H  +       KP+ C  CGK+F+R  HL +HQ+ 
Sbjct:   143 KPHKCTECGKSFCRLSHLIQHQ-RTHSGE-------KPYECEECGKSFSRSSHLAQHQRT 194

Query:    65 HARELLQSSMDMS-ALTGLAEEVFPTPLRLDENVRRWVACQR--IEGIDVVR-------- 113
             H  E      +     +  ++ +    +   E   +   C +   +  D+VR        
Sbjct:   195 HTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGE 254

Query:   114 -PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
              P+ C+ C + F R  HLV+H+ R H  +       KP+ C+ CGK+F+R  HL  HQ+I
Sbjct:   255 KPYHCNECGENFSRISHLVQHQ-RTHTGE-------KPYECTACGKSFSRSSHLITHQKI 306

Query:   173 HARE 176
             H  E
Sbjct:   307 HTGE 310

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E1BMZ4 ZNF436 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 223 (83.6 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 55/184 (29%), Positives = 89/184 (48%)

Query:     5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
             +P +C+ C + F R  HL++H+ R H  +       KP+ C  CGK+F+R  HL +HQ+ 
Sbjct:   220 KPHKCNECGKSFCRLSHLIQHQ-RTHSGE-------KPYECEECGKSFSRSSHLAQHQRT 271

Query:    65 HARELLQSSMDMS-ALTGLAEEVFPTPLRLDENVRRWVACQR--IEGIDVVR-------- 113
             H  E      +     +  ++ +    +   E   +   C +   +  D+VR        
Sbjct:   272 HTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGE 331

Query:   114 -PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
              P+ C+ C + F R  HLV+H+ R H  +       KP+ C+ CGK+F+R  HL  HQ+I
Sbjct:   332 KPYHCNECGENFSRISHLVQHQ-RTHTGE-------KPYECNACGKSFSRSSHLITHQKI 383

Query:   173 HARE 176
             H  E
Sbjct:   384 HTGE 387

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9NZD8 ZNF436 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 55/184 (29%), Positives = 89/184 (48%)

Query:     5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
             +P +C+ C + F R  HL++H+ R H  +       KP+ C  CGK+F+R  HL +HQ+ 
Sbjct:   220 KPHKCNECGKSFCRLSHLIQHQ-RTHSGE-------KPYECEECGKSFSRSSHLAQHQRT 271

Query:    65 HARELLQSSMDMS-ALTGLAEEVFPTPLRLDENVRRWVACQR--IEGIDVVR-------- 113
             H  E      +     +  ++ +    +   E   +   C +   +  D+VR        
Sbjct:   272 HTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGE 331

Query:   114 -PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
              P+ C+ C + F R  HLV+H+ R H  +       KP+ C+ CGK+F+R  HL  HQ+I
Sbjct:   332 KPYHCNECGENFSRISHLVQHQ-RTHTGE-------KPYECNACGKSFSRSSHLITHQKI 383

Query:   173 HARE 176
             H  E
Sbjct:   384 HTGE 387

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9C0F3 ZNF436 "Zinc finger protein 436" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 55/184 (29%), Positives = 89/184 (48%)

Query:     5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
             +P +C+ C + F R  HL++H+ R H  +       KP+ C  CGK+F+R  HL +HQ+ 
Sbjct:   220 KPHKCNECGKSFCRLSHLIQHQ-RTHSGE-------KPYECEECGKSFSRSSHLAQHQRT 271

Query:    65 HARELLQSSMDMS-ALTGLAEEVFPTPLRLDENVRRWVACQR--IEGIDVVR-------- 113
             H  E      +     +  ++ +    +   E   +   C +   +  D+VR        
Sbjct:   272 HTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGE 331

Query:   114 -PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
              P+ C+ C + F R  HLV+H+ R H  +       KP+ C+ CGK+F+R  HL  HQ+I
Sbjct:   332 KPYHCNECGENFSRISHLVQHQ-RTHTGE-------KPYECNACGKSFSRSSHLITHQKI 383

Query:   173 HARE 176
             H  E
Sbjct:   384 HTGE 387

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|I3LJU8 ZNF436 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 223 (83.6 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 55/184 (29%), Positives = 89/184 (48%)

Query:     5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
             +P +C+ C + F R  HL++H+ R H  +       KP+ C  CGK+F+R  HL +HQ+ 
Sbjct:   220 KPHKCNECGKSFCRLSHLIQHQ-RTHSGE-------KPYECEECGKSFSRSSHLAQHQRT 271

Query:    65 HARELLQSSMDMS-ALTGLAEEVFPTPLRLDENVRRWVACQR--IEGIDVVR-------- 113
             H  E      +     +  ++ +    +   E   +   C +   +  D+VR        
Sbjct:   272 HTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGE 331

Query:   114 -PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
              P+ C+ C + F R  HLV+H+ R H  +       KP+ C+ CGK+F+R  HL  HQ+I
Sbjct:   332 KPYHCNECGENFSRISHLVQHQ-RTHTGE-------KPYECNACGKSFSRSSHLITHQKI 383

Query:   173 HARE 176
             H  E
Sbjct:   384 HTGE 387

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	348
pfam00096	22	pfam00096, zf-C2H2, Zinc finger, C2H2 type	2e-04
pfam00096	22	pfam00096, zf-C2H2, Zinc finger, C2H2 type	2e-04
COG5048	467	COG5048, COG5048, FOG: Zn-finger [General function	2e-04
smart00355	23	smart00355, ZnF_C2H2, zinc finger	3e-04
smart00355	23	smart00355, ZnF_C2H2, zinc finger	3e-04
pfam00096	22	pfam00096, zf-C2H2, Zinc finger, C2H2 type	0.003

>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 44 SCSVCGKTFTRREHLRRHQQIH 65
           C  CGK+F+R+ +L+RH + H
Sbjct: 1  KCPDCGKSFSRKSNLKRHLRTH 22

The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Length = 22

>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 152 SCSVCGKTFTRREHLRRHQQIH 173
            C  CGK+F+R+ +L+RH + H
Sbjct: 1   KCPDCGKSFSRKSNLKRHLRTH 22

The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Length = 22

>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction only]

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 37/179 (20%)

Query: 6   PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC--SVCGKTFTRREHLRRHQQ 63
           P +   CN  F R   L RH +  +      G   KPFSC  S+CGK F+R + L+RH  
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNH----SGESLKPFSCPYSLCGKLFSRNDALKRHIL 344

Query: 64  IH-----ARELLQSSM--DMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQ 116
           +H     A+E L +S       L     +                  Q+ + +   +  +
Sbjct: 345 LHTSISPAKEKLLNSSSKFSPLLNNEPPQSL----------------QQYKDLKNDKKSE 388

Query: 117 CDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
                C + F R  +L  H    H    P            C K+F R  +L  H++IH
Sbjct: 389 TLSNSCIRNFKRDSNLSLHIIT-HLSFRP-----YNCKNPPCSKSFNRHYNLIPHKKIH 441

Length = 467

>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 43 FSCSVCGKTFTRREHLRRHQQIH 65
          + C  CGK F  +  LR H + H
Sbjct: 1  YRCPECGKVFKSKSALREHMRTH 23

Length = 23

>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 151 FSCSVCGKTFTRREHLRRHQQIH 173
           + C  CGK F  +  LR H + H
Sbjct: 1   YRCPECGKVFKSKSALREHMRTH 23

Length = 23

>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 289 KCDVCKKVFSRRSHLLRHLKR 309
           KC  C K FSR+S+L RHL+ 
Sbjct: 1   KCPDCGKSFSRKSNLKRHLRT 21

The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Length = 22

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
KOG2462|consensus	279		99.92
KOG1074|consensus	958		99.9
KOG2462|consensus	279		99.87
KOG3608|consensus	467		99.87
KOG3608|consensus	467		99.82
KOG3623|consensus	1007		99.72
KOG3576|consensus	267		99.72
KOG1074|consensus	958		99.68
KOG3576|consensus	267		99.68
KOG3623|consensus	1007		99.53
PLN03086	567	PRLI-interacting factor K; Provisional	99.09
PLN03086	567	PRLI-interacting factor K; Provisional	99.08
KOG3993|consensus	500		99.08
PHA00733	128	hypothetical protein	99.02
KOG3993|consensus	500		98.9
PHA00733	128	hypothetical protein	98.85
PHA02768	55	hypothetical protein; Provisional	98.68
PHA02768	55	hypothetical protein; Provisional	98.62
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.47
PHA00616	44	hypothetical protein	98.43
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.41
PHA00616	44	hypothetical protein	98.38
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.29
PHA00732	79	hypothetical protein	98.29
PHA00732	79	hypothetical protein	98.29
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.07
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.03
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.97
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.86
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.85
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.84
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.83
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.82
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.81
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.73
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.69
KOG1146|consensus	1406		97.56
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.54
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.45
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.45
KOG2231|consensus	669		97.45
KOG1146|consensus	1406		97.3
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.21
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.13
smart00355	26	ZnF_C2H2 zinc finger.	97.1
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.07
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.02
smart00355	26	ZnF_C2H2 zinc finger.	96.8
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.8
KOG2785|consensus	390		96.77
KOG2482|consensus	423		96.58
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.51
KOG2785|consensus	390		96.44
KOG2231|consensus	669		96.29
KOG4173|consensus	253		96.25
KOG4173|consensus	253		96.02
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	95.92
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.76
COG4049	65	Uncharacterized protein containing archaeal-type C	95.11
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.95
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.91
KOG2482|consensus	423		94.84
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.33
KOG2893|consensus	341		93.99
PRK04860	160	hypothetical protein; Provisional	93.99
PRK04860	160	hypothetical protein; Provisional	93.91
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.89
COG4049	65	Uncharacterized protein containing archaeal-type C	93.54
KOG2893|consensus	341		93.49
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	93.38
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	91.27
COG5048	467	FOG: Zn-finger [General function prediction only]	90.57
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	89.56
COG5048	467	FOG: Zn-finger [General function prediction only]	88.75
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	87.72
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	87.5
KOG2186|consensus	276		87.16
PF12907	40	zf-met2: Zinc-binding	86.8
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	86.14
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	85.78
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	85.7
KOG0717|consensus	508		85.09
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	85.08
KOG4124|consensus	442		83.95
smart00531	147	TFIIE Transcription initiation factor IIE.	83.25
PHA00626	59	hypothetical protein	83.09
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	82.84
KOG2071|consensus	579		82.78
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	82.52
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	82.41
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	82.29
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	81.97
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	81.71
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	81.56
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	81.5
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	80.84
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	80.81
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	80.46
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	80.26

>KOG2462|consensus

Probab=99.92  E-value=1.2e-25  Score=181.92  Aligned_cols=113  Identities=35%  Similarity=0.746  Sum_probs=94.8

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccc
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLA   83 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c   83 (348)
                      .-.|+|+.|++.+.+..+|.+|.++|..++     ..+.+.|.+|++.|.+...|..|+++|.-                
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~-----s~ka~~C~~C~K~YvSmpALkMHirTH~l----------------  186 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLD-----SKKAFSCKYCGKVYVSMPALKMHIRTHTL----------------  186 (279)
T ss_pred             CCceeccccccccccccccchhhccccccc-----ccccccCCCCCceeeehHHHhhHhhccCC----------------
Confidence            346899999999999999999988887766     36789999999999999999999999963                


Q ss_pred             cccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCH
Q psy4065          84 EEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRR  163 (348)
Q Consensus        84 ~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~  163 (348)
                                                    +++|.+||+.|...+-|+-|+++|.+        ++||.|+.|++.|..+
T Consensus       187 ------------------------------~c~C~iCGKaFSRPWLLQGHiRTHTG--------EKPF~C~hC~kAFADR  228 (279)
T KOG2462|consen  187 ------------------------------PCECGICGKAFSRPWLLQGHIRTHTG--------EKPFSCPHCGKAFADR  228 (279)
T ss_pred             ------------------------------CcccccccccccchHHhhcccccccC--------CCCccCCcccchhcch
Confidence                                          46788888888888888888877776        7888888888888888


Q ss_pred             HHHHHHHHHhhh
Q psy4065         164 EHLRRHQQIHAR  175 (348)
Q Consensus       164 ~~L~~H~~~h~~  175 (348)
                      .+|+.||++|.+
T Consensus       229 SNLRAHmQTHS~  240 (279)
T KOG2462|consen  229 SNLRAHMQTHSD  240 (279)
T ss_pred             HHHHHHHHhhcC
Confidence            888888888744

>KOG1074|consensus

Probab=99.90  E-value=6.7e-25  Score=200.65  Aligned_cols=56  Identities=29%  Similarity=0.650  Sum_probs=52.9

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhh
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAREL   69 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   69 (348)
                      +++|.+|.++|.....|..|++.|.+        +++|+|.+||..|.++.+|+.|...|+...
T Consensus       353 khkCr~CakvfgS~SaLqiHlRSHTG--------ERPfqCnvCG~~FSTkGNLKvH~~rH~e~~  408 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQIHLRSHTG--------ERPFQCNVCGNRFSTKGNLKVHFQRHREKY  408 (958)
T ss_pred             cchhhhhHhhcCchhhhhhhhhccCC--------CCCeeecccccccccccceeeeeeeccccC
Confidence            57899999999999999999999998        999999999999999999999999998664

>KOG2462|consensus

Probab=99.87  E-value=5.4e-23  Score=166.59  Aligned_cols=109  Identities=30%  Similarity=0.679  Sum_probs=102.7

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhccc
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGL   82 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~   82 (348)
                      ..+-+.|+.|+++|.+...|+.|+++|.          -+++|.+||+.|.+.+.|+-|+|+|.||              
T Consensus       158 s~ka~~C~~C~K~YvSmpALkMHirTH~----------l~c~C~iCGKaFSRPWLLQGHiRTHTGE--------------  213 (279)
T KOG2462|consen  158 SKKAFSCKYCGKVYVSMPALKMHIRTHT----------LPCECGICGKAFSRPWLLQGHIRTHTGE--------------  213 (279)
T ss_pred             ccccccCCCCCceeeehHHHhhHhhccC----------CCcccccccccccchHHhhcccccccCC--------------
Confidence            3678999999999999999999999884          5899999999999999999999999999              


Q ss_pred             ccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCC
Q psy4065          83 AEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTR  162 (348)
Q Consensus        83 c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~  162 (348)
                                                    |||.|+.|++.|.++++|+.||++|-+        .+.|.|..|+++|..
T Consensus       214 ------------------------------KPF~C~hC~kAFADRSNLRAHmQTHS~--------~K~~qC~~C~KsFsl  255 (279)
T KOG2462|consen  214 ------------------------------KPFSCPHCGKAFADRSNLRAHMQTHSD--------VKKHQCPRCGKSFAL  255 (279)
T ss_pred             ------------------------------CCccCCcccchhcchHHHHHHHHhhcC--------CccccCcchhhHHHH
Confidence                                          999999999999999999999999987        789999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4065         163 REHLRRHQQIH  173 (348)
Q Consensus       163 ~~~L~~H~~~h  173 (348)
                      ..-|.+|....
T Consensus       256 ~SyLnKH~ES~  266 (279)
T KOG2462|consen  256 KSYLNKHSESA  266 (279)
T ss_pred             HHHHHHhhhhc
Confidence            99999998664

>KOG3608|consensus

Probab=99.87  E-value=3.2e-22  Score=166.20  Aligned_cols=134  Identities=25%  Similarity=0.456  Sum_probs=78.8

Q ss_pred             cccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCC
Q psy4065          10 DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPT   89 (348)
Q Consensus        10 ~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~   89 (348)
                      ..|.+.|.+++.|++|++.|.+        ++...|+.||..|.++..|-.|++.-..     .+...+.|..|.+.|.+
T Consensus       183 ~~Ct~~~~~k~~LreH~r~Hs~--------eKvvACp~Cg~~F~~~tkl~DH~rRqt~-----l~~n~fqC~~C~KrFaT  249 (467)
T KOG3608|consen  183 AMCTKHMGNKYRLREHIRTHSN--------EKVVACPHCGELFRTKTKLFDHLRRQTE-----LNTNSFQCAQCFKRFAT  249 (467)
T ss_pred             hhhhhhhccHHHHHHHHHhcCC--------CeEEecchHHHHhccccHHHHHHHhhhh-----hcCCchHHHHHHHHHhH
Confidence            3466666666666666555543        5566666666666666666666653322     22234555566666666


Q ss_pred             cchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHH
Q psy4065          90 PLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH  169 (348)
Q Consensus        90 ~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H  169 (348)
                      ...|..|+..+..           -|+|+.|+.+....++|..||+..|.       ..+||+|..|++.|.+...|.+|
T Consensus       250 eklL~~Hv~rHvn-----------~ykCplCdmtc~~~ssL~~H~r~rHs-------~dkpfKCd~Cd~~c~~esdL~kH  311 (467)
T KOG3608|consen  250 EKLLKSHVVRHVN-----------CYKCPLCDMTCSSASSLTTHIRYRHS-------KDKPFKCDECDTRCVRESDLAKH  311 (467)
T ss_pred             HHHHHHHHHHhhh-----------cccccccccCCCChHHHHHHHHhhhc-------cCCCccccchhhhhccHHHHHHH
Confidence            6666666555444           25666666666666666666666555       35666666666666666666666


Q ss_pred             HHHhh
Q psy4065         170 QQIHA  174 (348)
Q Consensus       170 ~~~h~  174 (348)
                      +..|.
T Consensus       312 ~~~HS  316 (467)
T KOG3608|consen  312 VQVHS  316 (467)
T ss_pred             HHhcc
Confidence            66554

>KOG3608|consensus

Probab=99.82  E-value=3.7e-20  Score=154.06  Aligned_cols=143  Identities=23%  Similarity=0.446  Sum_probs=130.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT   80 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~   80 (348)
                      |.++|...|+.|+.-|+++..|..|++.-...+      ..+|+|..|.+.|.+...|..|+..|-..         ++|
T Consensus       202 Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~------~n~fqC~~C~KrFaTeklL~~Hv~rHvn~---------ykC  266 (467)
T KOG3608|consen  202 HSNEKVVACPHCGELFRTKTKLFDHLRRQTELN------TNSFQCAQCFKRFATEKLLKSHVVRHVNC---------YKC  266 (467)
T ss_pred             cCCCeEEecchHHHHhccccHHHHHHHhhhhhc------CCchHHHHHHHHHhHHHHHHHHHHHhhhc---------ccc
Confidence            788999999999999999999999999887633      56899999999999999999999998764         778


Q ss_pred             ccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc--ccc
Q psy4065          81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGK  158 (348)
Q Consensus        81 ~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~--C~~  158 (348)
                      +.|+..-+...+|.+|++-.|...        +||+|..|++.|.+.+.|.+|.+.|.         +..|.|..  |-+
T Consensus       267 plCdmtc~~~ssL~~H~r~rHs~d--------kpfKCd~Cd~~c~~esdL~kH~~~HS---------~~~y~C~h~~C~~  329 (467)
T KOG3608|consen  267 PLCDMTCSSASSLTTHIRYRHSKD--------KPFKCDECDTRCVRESDLAKHVQVHS---------KTVYQCEHPDCHY  329 (467)
T ss_pred             cccccCCCChHHHHHHHHhhhccC--------CCccccchhhhhccHHHHHHHHHhcc---------ccceecCCCCCcH
Confidence            999999999999999999888764        89999999999999999999998664         47899999  999


Q ss_pred             ccCCHHHHHHHHHHhhh
Q psy4065         159 TFTRREHLRRHQQIHAR  175 (348)
Q Consensus       159 ~f~~~~~L~~H~~~h~~  175 (348)
                      +|.+...|++|++.++.
T Consensus       330 s~r~~~q~~~H~~evhE  346 (467)
T KOG3608|consen  330 SVRTYTQMRRHFLEVHE  346 (467)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999987653

>KOG3623|consensus

Probab=99.72  E-value=3e-18  Score=154.99  Aligned_cols=91  Identities=23%  Similarity=0.401  Sum_probs=74.3

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcCCCC-----CCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchh
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDP-----PEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSA   78 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~-----~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~   78 (348)
                      +-.|-|..|.++|..+..|.+|+..|-.-..     ..+...+.|+|+.||++|+.+.+|..|+|.|.|++++.|.    
T Consensus       238 e~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCp----  313 (1007)
T KOG3623|consen  238 EPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECP----  313 (1007)
T ss_pred             CCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCc----
Confidence            4568899999999999999999777754222     2345567899999999999999999999999999887765    


Q ss_pred             hcccccccCCCcchhhhhhhhhh
Q psy4065          79 LTGLAEEVFPTPLRLDENVRRWV  101 (348)
Q Consensus        79 ~~~~c~~~~~~~~~l~~h~~~~~  101 (348)
                         .|.+.|+....+..||.++.
T Consensus       314 ---nCkKRFSHSGSySSHmSSKK  333 (1007)
T KOG3623|consen  314 ---NCKKRFSHSGSYSSHMSSKK  333 (1007)
T ss_pred             ---ccccccccCCcccccccccc
Confidence               88888888888888877543

>KOG3576|consensus

Probab=99.72  E-value=7.6e-19  Score=135.27  Aligned_cols=122  Identities=32%  Similarity=0.611  Sum_probs=107.4

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccc
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLA   83 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c   83 (348)
                      +-.|.|.+|++.|.....|.+|++-|..        .+.|.|..||+.|....+|.+|+++|.+.               
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~--------vkr~lct~cgkgfndtfdlkrh~rthtgv---------------  171 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSD--------VKRHLCTFCGKGFNDTFDLKRHTRTHTGV---------------  171 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccH--------HHHHHHhhccCcccchhhhhhhhccccCc---------------
Confidence            3468999999999999999999877765        88999999999999999999999999997               


Q ss_pred             cccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCC---CCCCCCCcccccccccc
Q psy4065          84 EEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPP---EGAEAKPFSCSVCGKTF  160 (348)
Q Consensus        84 ~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~---~~~~~~~~~C~~C~~~f  160 (348)
                                                   +||+|..|++.|..+-.|+.|++..|+++..   .....+.|.|..||+.-
T Consensus       172 -----------------------------rpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~  222 (267)
T KOG3576|consen  172 -----------------------------RPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTS  222 (267)
T ss_pred             -----------------------------cccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCC
Confidence                                         8999999999999999999999999986432   11245789999999999


Q ss_pred             CCHHHHHHHHHHhhhhc
Q psy4065         161 TRREHLRRHQQIHAREL  177 (348)
Q Consensus       161 ~~~~~L~~H~~~h~~~~  177 (348)
                      .....+..|+..|+.-.
T Consensus       223 ~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  223 ERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             CChhHHHHHHHhcCCCC
Confidence            99999999999987753

>KOG1074|consensus

Probab=99.68  E-value=8.6e-18  Score=154.55  Aligned_cols=56  Identities=30%  Similarity=0.584  Sum_probs=52.3

Q ss_pred             cccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhcc
Q psy4065         115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       115 ~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      ..|..|++.|.+...|+.||++|.+        .+||.|.+|++.|..+..|+.||.+|+....
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg--------~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~  935 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTG--------PKPFFCHFCEEAFTTRGNLKVHMGTHMWVQP  935 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCC--------CCCccchhhhhhhhhhhhhhhhhccccccCC
Confidence            6799999999999999999988887        8999999999999999999999999987643

>KOG3576|consensus

Probab=99.68  E-value=1.3e-17  Score=128.51  Aligned_cols=88  Identities=32%  Similarity=0.682  Sum_probs=80.6

Q ss_pred             CCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcc
Q psy4065          37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQ  116 (348)
Q Consensus        37 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~  116 (348)
                      +.....|.|.+|++.|.-...|.+|++-|...                                            +++-
T Consensus       112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~v--------------------------------------------kr~l  147 (267)
T KOG3576|consen  112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDV--------------------------------------------KRHL  147 (267)
T ss_pred             CCCCCeeeeehhhhhhhHHHHHHHHhhhccHH--------------------------------------------HHHH
Confidence            34456799999999999999999999999887                                            7899


Q ss_pred             cCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         117 CDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       117 C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      |..||+.|.+.-.|.+|+++|.+        .+||+|.+|++.|...-+|..|++.-|+.
T Consensus       148 ct~cgkgfndtfdlkrh~rthtg--------vrpykc~~c~kaftqrcsleshl~kvhgv  199 (267)
T KOG3576|consen  148 CTFCGKGFNDTFDLKRHTRTHTG--------VRPYKCSLCEKAFTQRCSLESHLKKVHGV  199 (267)
T ss_pred             HhhccCcccchhhhhhhhccccC--------ccccchhhhhHHHHhhccHHHHHHHHcCc
Confidence            99999999999999999999987        89999999999999999999999776664

>KOG3623|consensus

Probab=99.53  E-value=2.2e-15  Score=136.69  Aligned_cols=122  Identities=31%  Similarity=0.603  Sum_probs=102.6

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccc
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEE   85 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~   85 (348)
                      ...|+.|.+.+.+...|+.|++.-|..      .+..|.|.+|.++|.+...|.+||.+|.......             
T Consensus       210 lltcpycdrgykrltslkeHikyrhek------ne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa-------------  270 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHEK------NEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQA-------------  270 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhh------CCCCCcchhhhhhhhhHHHHHHHHHhhcCCCccc-------------
Confidence            568999999999999999999999872      2456899999999999999999999997643221             


Q ss_pred             cCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHH
Q psy4065          86 VFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREH  165 (348)
Q Consensus        86 ~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~  165 (348)
                                        +........+.|+|.+|+++|+.+..|..|++.|.+        ++||.|+-|.++|+...+
T Consensus       271 ------------------~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSG--------EKPfeCpnCkKRFSHSGS  324 (1007)
T KOG3623|consen  271 ------------------ISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSG--------EKPFECPNCKKRFSHSGS  324 (1007)
T ss_pred             ------------------ccccchhhhccccccccchhhhhHHHHHhhheeecC--------CCCcCCcccccccccCCc
Confidence                              111112222679999999999999999999988887        999999999999999999


Q ss_pred             HHHHHHH
Q psy4065         166 LRRHQQI  172 (348)
Q Consensus       166 L~~H~~~  172 (348)
                      +-.||..
T Consensus       325 ySSHmSS  331 (1007)
T KOG3623|consen  325 YSSHMSS  331 (1007)
T ss_pred             ccccccc
Confidence            9999854

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.09  E-value=9e-11  Score=107.69  Aligned_cols=106  Identities=20%  Similarity=0.509  Sum_probs=62.7

Q ss_pred             ccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc--cccccCCHHHHHHHHHHhhhhhhhccccchhhccccc
Q psy4065           7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAE   84 (348)
Q Consensus         7 y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~   84 (348)
                      -+|+.|.... ....|..|.... .        -..-.|+.  |+..| ....+..|+                .|..|+
T Consensus       408 V~C~NC~~~i-~l~~l~lHe~~C-~--------r~~V~Cp~~~Cg~v~-~r~el~~H~----------------~C~~Cg  460 (567)
T PLN03086        408 VECRNCKHYI-PSRSIALHEAYC-S--------RHNVVCPHDGCGIVL-RVEEAKNHV----------------HCEKCG  460 (567)
T ss_pred             EECCCCCCcc-chhHHHHHHhhC-C--------CcceeCCccccccee-eccccccCc----------------cCCCCC
Confidence            3699998854 466777885443 2        23345664  66666 233344443                244555


Q ss_pred             ccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccC
Q psy4065          85 EVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT  161 (348)
Q Consensus        85 ~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~  161 (348)
                      ..|. ...|..|+..+|           +++.|+ |++.+ .+..|..|+..|++        .+++.|..|++.|.
T Consensus       461 k~f~-~s~LekH~~~~H-----------kpv~Cp-Cg~~~-~R~~L~~H~~thCp--------~Kpi~C~fC~~~v~  515 (567)
T PLN03086        461 QAFQ-QGEMEKHMKVFH-----------EPLQCP-CGVVL-EKEQMVQHQASTCP--------LRLITCRFCGDMVQ  515 (567)
T ss_pred             Cccc-hHHHHHHHHhcC-----------CCccCC-CCCCc-chhHHHhhhhccCC--------CCceeCCCCCCccc
Confidence            5553 344555543322           357777 77644 45777777766666        67777887877774

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.08  E-value=2e-10  Score=105.41  Aligned_cols=53  Identities=19%  Similarity=0.431  Sum_probs=41.6

Q ss_pred             cCcccCcchhhcC----------CHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065         113 RPFQCDVCNQGFV----------RKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       113 ~~~~C~~C~~~f~----------~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      +++.|.+|++.|.          ....|..|... ++        .+++.|..|++.+.. ..|..|+-..|.
T Consensus       503 Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-CG--------~rt~~C~~Cgk~Vrl-rdm~~H~~~~h~  565 (567)
T PLN03086        503 RLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-CG--------SRTAPCDSCGRSVML-KEMDIHQIAVHQ  565 (567)
T ss_pred             CceeCCCCCCccccCccccchhhhhhhHHHHHHh-cC--------CcceEccccCCeeee-hhHHHHHHHhhc
Confidence            8899999999985          24589999855 56        789999999988854 567788755443

>KOG3993|consensus

Probab=99.08  E-value=2.2e-10  Score=98.64  Aligned_cols=92  Identities=28%  Similarity=0.556  Sum_probs=69.6

Q ss_pred             hhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCC------------
Q psy4065          77 SALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPE------------  144 (348)
Q Consensus        77 ~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~------------  144 (348)
                      .+.|.+|...|.+.+.|..|.     ..++..    -.|+|++|++.|+-..+|..|.++|-......            
T Consensus       267 dyiCqLCK~kYeD~F~LAQHr-----C~RIV~----vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~  337 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHR-----CPRIVH----VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVE  337 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhcc-----CCeeEE----eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhh
Confidence            566888888888888888872     122222    34899999999999999999998887542211            


Q ss_pred             -------------CCCCCCccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         145 -------------GAEAKPFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       145 -------------~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                                   +....-|.|..|++.|.+..-|+.|+.+|+...
T Consensus       338 ~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~  383 (500)
T KOG3993|consen  338 TRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP  383 (500)
T ss_pred             hhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence                         123457999999999999999999998887653

>PHA00733 hypothetical protein

Probab=99.02  E-value=4.3e-10  Score=84.25  Aligned_cols=86  Identities=21%  Similarity=0.347  Sum_probs=63.4

Q ss_pred             CCCCccccccccccCCHHHHHHHH--HHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcc
Q psy4065          39 EAKPFSCSVCGKTFTRREHLRRHQ--QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQ  116 (348)
Q Consensus        39 ~~~~~~C~~C~~~f~~~~~l~~H~--~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~  116 (348)
                      +.+++.|.+|...|.....|..|.  ..+...                                         ...++|.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-----------------------------------------~~~kPy~   75 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTS-----------------------------------------KAVSPYV   75 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhccc-----------------------------------------CCCCCcc
Confidence            367888999988888877777663  222110                                         0116888


Q ss_pred             cCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065         117 CDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       117 C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      |..|++.|.+...|..|++.+ .         .+|.|..|++.|.....|..|+...|+
T Consensus        76 C~~Cgk~Fss~s~L~~H~r~h-~---------~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         76 CPLCLMPFSSSVSLKQHIRYT-E---------HSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCCCcCCCHHHHHHHHhcC-C---------cCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            999999999999999888654 3         248899999999999999988876554

>KOG3993|consensus

Probab=98.90  E-value=2.7e-10  Score=98.06  Aligned_cols=155  Identities=20%  Similarity=0.264  Sum_probs=93.9

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCCC-------------------------CCCCCCccccccccccCCHHHHHH
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPE-------------------------GAEAKPFSCSVCGKTFTRREHLRR   60 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~-------------------------~~~~~~~~C~~C~~~f~~~~~l~~   60 (348)
                      .|+|++|+++|....+|..|.++|-+.....                         .....-|.|..|++.|++...|+.
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrK  374 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRK  374 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHH
Confidence            5999999999999999999966665433110                         022346999999999999999999


Q ss_pred             HHHHhhhhhhhccccchhh----------cccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHH
Q psy4065          61 HQQIHARELLQSSMDMSAL----------TGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHL  130 (348)
Q Consensus        61 H~~~h~~~~~~~~~~~~~~----------~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L  130 (348)
                      |+.+|+.....+.....+.          +..+...+.....--.+.        +..........|+.|+--+.++..-
T Consensus       375 Hqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~v--------l~~a~sael~~pp~~~~ppsss~~s  446 (500)
T KOG3993|consen  375 HQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEV--------LYVAGSAELELPPYDGSPPSSSGSS  446 (500)
T ss_pred             hHHhhhccccchhcccCcchhhcccccccccccccccccccccccce--------eeeeccccccCCCCCCCCcccCCCC
Confidence            9999987543332111111          122222222111111110        0000001223567777666655443


Q ss_pred             HHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         131 VRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       131 ~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ..|.+.-+.        ...|.|.+|-..|.+..+|.+|+..+|..
T Consensus       447 gg~~rlg~~--------~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  447 GGYGRLGIA--------EQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             Cccccccch--------hhccccccchHhhhcCcchHhHhhhcChH
Confidence            333222221        45799999999999999999999775543

>PHA00733 hypothetical protein

Probab=98.85  E-value=2.3e-09  Score=80.35  Aligned_cols=85  Identities=18%  Similarity=0.346  Sum_probs=72.2

Q ss_pred             CCcccccccccccCChHHHHHH--HHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcc
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRH--RKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTG   81 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H--~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~   81 (348)
                      .+++.|.+|...|.....|..|  +..+...     ....+|.|+.|++.|.+...|..|++.|  .             
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~-------------   97 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTS-----KAVSPYVCPLCLMPFSSSVSLKQHIRYT--E-------------   97 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhccc-----CCCCCccCCCCCCcCCCHHHHHHHHhcC--C-------------
Confidence            6789999999999999999888  4433211     1368999999999999999999999865  2             


Q ss_pred             cccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          82 LAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        82 ~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                     .+|.|..|++.|.....|.+|+...|+
T Consensus        98 -------------------------------~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         98 -------------------------------HSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             -------------------------------cCccCCCCCCccCCHHHHHHHHHHhcC
Confidence                                           458999999999999999999999887

>PHA02768 hypothetical protein; Provisional

Probab=98.68  E-value=8.5e-09  Score=63.29  Aligned_cols=43  Identities=14%  Similarity=0.546  Sum_probs=38.6

Q ss_pred             CcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHH
Q psy4065         114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHL  166 (348)
Q Consensus       114 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L  166 (348)
                      .|.|+.||+.|.....|..||+.|.          ++|+|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~----------k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN----------TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC----------CcccCCcccceeccccee
Confidence            4899999999999999999998875          489999999999877765

>PHA02768 hypothetical protein; Provisional

Probab=98.62  E-value=1.7e-08  Score=61.92  Aligned_cols=43  Identities=14%  Similarity=0.546  Sum_probs=33.5

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHH
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHL   58 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l   58 (348)
                      -|+|+.||+.|.+...|..|++.|+          ++|+|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~----------k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN----------TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC----------CcccCCcccceeccccee
Confidence            3788888888888888888888774          467888888888766554

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.47  E-value=3e-07  Score=57.88  Aligned_cols=53  Identities=30%  Similarity=0.628  Sum_probs=44.0

Q ss_pred             CcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065         114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       114 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      .|.|++|++ ..+...|..|....|.      ...+.+.|++|...+.  ..|..||..+|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~------~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHR------SESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCc------CCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            489999999 6778999999999887      2356799999998765  499999988663

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=98.43  E-value=2.1e-07  Score=54.28  Aligned_cols=29  Identities=21%  Similarity=0.604  Sum_probs=26.8

Q ss_pred             CCcchhhHHhhhhhHHHHHHHHHhcCCCC
Q psy4065         287 IPKCDVCKKVFSRRSHLLRHLKRLHNIDP  315 (348)
Q Consensus       287 ~y~C~~C~~~f~~~~~L~~H~~~~H~~~~  315 (348)
                      +|+|..||+.|..++.|..|++.||+.++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~   29 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK   29 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence            59999999999999999999999998754

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.41  E-value=4.7e-07  Score=56.97  Aligned_cols=53  Identities=30%  Similarity=0.608  Sum_probs=43.3

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   67 (348)
                      -|.|++|++ ..+...|..|+...|..      +.+.+.||+|...+.  .+|..|+..+|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~------~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRS------ESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcC------CCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            489999999 56688999999999982      235699999998654  489999988763

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=98.38  E-value=1.8e-07  Score=54.58  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=28.6

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      ||+|+.||+.|..+..|..|++.+|+        ..++.|.+-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg--------~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHK--------QNKLTLEYF   35 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcC--------CCccceeEE
Confidence            68888888888888888888888887        677777653

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.29  E-value=5.8e-07  Score=47.02  Aligned_cols=26  Identities=38%  Similarity=0.924  Sum_probs=23.1

Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCccccccccccCC
Q psy4065         129 HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTR  162 (348)
Q Consensus       129 ~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~  162 (348)
                      .|.+||+.|.+        ++||.|++|++.|.+
T Consensus         1 ~l~~H~~~H~~--------~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTG--------EKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSS--------SSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCC--------CCCCCCCCCcCeeCc
Confidence            48999999887        899999999999964

...

>PHA00732 hypothetical protein

Probab=98.29  E-value=3.5e-07  Score=61.94  Aligned_cols=49  Identities=29%  Similarity=0.559  Sum_probs=41.1

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   67 (348)
                      ||+|..|++.|.+...|..|++.+|.          ++.|+.|++.|.   .|..|++++..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----------~~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT----------LTKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC----------CCccCCCCCEeC---ChhhhhcccCC
Confidence            69999999999999999999876553          258999999998   58888866554

>PHA00732 hypothetical protein

Probab=98.29  E-value=4.5e-07  Score=61.42  Aligned_cols=49  Identities=29%  Similarity=0.559  Sum_probs=40.6

Q ss_pred             CcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065         114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       114 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      ||.|..|++.|.+...|..|++.+|.          ++.|+.|++.|.   .|..|+++...
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----------~~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT----------LTKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC----------CCccCCCCCEeC---ChhhhhcccCC
Confidence            58899999999999999999975554          358999999997   58888865443

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.07  E-value=3.3e-06  Score=44.13  Aligned_cols=26  Identities=38%  Similarity=0.924  Sum_probs=22.4

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCccccccccccCC
Q psy4065          21 HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTR   54 (348)
Q Consensus        21 ~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~   54 (348)
                      +|..|++.|.+        +++|+|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~--------~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTG--------EKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSS--------SSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCC--------CCCCCCCCCcCeeCc
Confidence            58899998876        899999999999864

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.03  E-value=1.4e-06  Score=44.78  Aligned_cols=24  Identities=33%  Similarity=0.761  Sum_probs=20.9

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhc
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLH  311 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H  311 (348)
                      |.|++|++.|.+...|+.|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999999987

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.97  E-value=1.9e-06  Score=43.79  Aligned_cols=22  Identities=50%  Similarity=0.976  Sum_probs=21.2

Q ss_pred             CcchhhHHhhhhhHHHHHHHHH
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKR  309 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~  309 (348)
                      |+|++|++.|.++..|..||+.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6899999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.86  E-value=3.3e-06  Score=44.76  Aligned_cols=26  Identities=35%  Similarity=0.478  Sum_probs=24.2

Q ss_pred             CCcchhhHHhhhhhHHHHHHHHHhcC
Q psy4065         287 IPKCDVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       287 ~y~C~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      +|.|..|++.|.+...|..|++.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58999999999999999999998875

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.85  E-value=1.2e-05  Score=40.79  Aligned_cols=22  Identities=36%  Similarity=1.073  Sum_probs=11.9

Q ss_pred             ccccccccccCCHHHHHHHHHH
Q psy4065         151 FSCSVCGKTFTRREHLRRHQQI  172 (348)
Q Consensus       151 ~~C~~C~~~f~~~~~L~~H~~~  172 (348)
                      |+|+.|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4455555555555555555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.84  E-value=9.9e-06  Score=58.47  Aligned_cols=25  Identities=36%  Similarity=0.798  Sum_probs=20.2

Q ss_pred             CcccCcchhhcCCHHHHHHHHHHhC
Q psy4065         114 PFQCDVCNQGFVRKEHLVRHRKRAH  138 (348)
Q Consensus       114 ~~~C~~C~~~f~~~~~L~~H~~~~h  138 (348)
                      .+.|..|++.|.+...|..||+.++
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCcc
Confidence            5889999999999999999998654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.83  E-value=1.1e-05  Score=58.29  Aligned_cols=59  Identities=34%  Similarity=0.744  Sum_probs=21.9

Q ss_pred             cccccccccCChHHHHHHHHHhcCCCCCC--------------CCC-CCCccccccccccCCHHHHHHHHHHhh
Q psy4065           8 QCDVCNQGFVRKEHLVRHRKRAHDLDPPE--------------GAE-AKPFSCSVCGKTFTRREHLRRHQQIHA   66 (348)
Q Consensus         8 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~--------------~~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~   66 (348)
                      +|.+|+..|.+...|..|+...|+.....              ... ...+.|.+|+..|.+...|..||+.++
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            69999999999999999999999865331              011 125899999999999999999998763

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.82  E-value=4.8e-06  Score=69.64  Aligned_cols=59  Identities=31%  Similarity=0.734  Sum_probs=47.9

Q ss_pred             cCcccCc--chhhcCCHHHHHHHHHHhCCCC------CC-----CCCCCCCccccccccccCCHHHHHHHHH
Q psy4065         113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLD------PP-----EGAEAKPFSCSVCGKTFTRREHLRRHQQ  171 (348)
Q Consensus       113 ~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~------~~-----~~~~~~~~~C~~C~~~f~~~~~L~~H~~  171 (348)
                      +||+|++  |.+.|++...|..|+.--|.-+      .|     .....+||+|++|+++|.+..+|+.|..
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            8999987  9999999999999997655211      11     1224689999999999999999999964

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.81  E-value=1.6e-05  Score=40.67  Aligned_cols=24  Identities=38%  Similarity=0.854  Sum_probs=12.4

Q ss_pred             ccccccccccCChHHHHHHHHHhc
Q psy4065           7 FQCDVCNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         7 y~C~~C~~~f~~~~~l~~H~~~~h   30 (348)
                      |+|++|++.|.+...|+.|+..+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            455555555555555555555543

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.73  E-value=9.9e-06  Score=67.80  Aligned_cols=61  Identities=31%  Similarity=0.709  Sum_probs=48.6

Q ss_pred             CCCcccccc--cccccCChHHHHHHHHHhcC------CCCCC-----CCCCCCccccccccccCCHHHHHHHHH
Q psy4065           3 VVRPFQCDV--CNQGFVRKEHLVRHRKRAHD------LDPPE-----GAEAKPFSCSVCGKTFTRREHLRRHQQ   63 (348)
Q Consensus         3 ~~~~y~C~~--C~~~f~~~~~l~~H~~~~h~------~~~~~-----~~~~~~~~C~~C~~~f~~~~~l~~H~~   63 (348)
                      ++|||+|++  |.+.+.+...|++|+.--|.      .+.++     .++.+||.|.+|++.|+....|..|..
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            359999987  99999999999999654442      11221     356789999999999999999998864

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.69  E-value=0.00012  Score=62.29  Aligned_cols=132  Identities=25%  Similarity=0.395  Sum_probs=80.8

Q ss_pred             ccccc--cccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccccc---ccC------CHHHHHHHHHHhhhhhhhcccc
Q psy4065           7 FQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGK---TFT------RREHLRRHQQIHARELLQSSMD   75 (348)
Q Consensus         7 y~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~---~f~------~~~~l~~H~~~h~~~~~~~~~~   75 (348)
                      |.|+.  |..+......|..|.+..|.          .+.|.+|-.   .|.      +...|+.|...-..+.   ...
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~----------~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~---GFK  218 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHG----------FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEE---GFK  218 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcC----------cEEhHhhhcCcccCccceeeeecccccccccCCcccc---CcC
Confidence            67765  77777778899999998886          445555532   122      2334444443221111   112


Q ss_pred             chhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcch-------hhcCCHHHHHHHHHHhCCCCCCCCCCC
Q psy4065          76 MSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCN-------QGFVRKEHLVRHRKRAHDLDPPEGAEA  148 (348)
Q Consensus        76 ~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~-------~~f~~~~~L~~H~~~~h~~~~~~~~~~  148 (348)
                      .-..|.+|...|.+-..|..|++..|-             .|-+|+       ..|++...|.+|++..           
T Consensus       219 GHP~C~FC~~~FYdDDEL~~HcR~~HE-------------~ChICD~v~p~~~QYFK~Y~~Le~HF~~~-----------  274 (493)
T COG5236         219 GHPLCIFCKIYFYDDDELRRHCRLRHE-------------ACHICDMVGPIRYQYFKSYEDLEAHFRNA-----------  274 (493)
T ss_pred             CCchhhhccceecChHHHHHHHHhhhh-------------hhhhhhccCccchhhhhCHHHHHHHhhcC-----------
Confidence            223366777777777777777655554             344444       3688889999998533           


Q ss_pred             CCccccc--cc----cccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSV--CG----KTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~--C~----~~f~~~~~L~~H~~~h~~~  176 (348)
                       -|.|.+  |.    ++|.....|..|+..-|+.
T Consensus       275 -hy~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~  307 (493)
T COG5236         275 -HYCCTFQTCRVGKCYVFPYHTELLEHLTRFHKV  307 (493)
T ss_pred             -ceEEEEEEEecCcEEEeccHHHHHHHHHHHhhc
Confidence             366655  43    4799999999998665554

>KOG1146|consensus

Probab=97.56  E-value=4.4e-05  Score=75.81  Aligned_cols=152  Identities=17%  Similarity=0.227  Sum_probs=87.6

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcCCCC-----------------CCCCCCCCccccccccccCCHHHHHHHHHHh
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDP-----------------PEGAEAKPFSCSVCGKTFTRREHLRRHQQIH   65 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~-----------------~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   65 (348)
                      ..|.|+|+.|+..|.....|-.|++..|....                 ......++|.|..|.+.+..+..|..|++..
T Consensus       462 ~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~  541 (1406)
T KOG1146|consen  462 FFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSD  541 (1406)
T ss_pred             ccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHH
Confidence            45889999999999999999999998664221                 1123356899999999999999999999754


Q ss_pred             hhhhhhccccchh----------hcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHH
Q psy4065          66 ARELLQSSMDMSA----------LTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRK  135 (348)
Q Consensus        66 ~~~~~~~~~~~~~----------~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~  135 (348)
                      --...........          .+..+...-...           ..........+-.|.|..|++...-...|+.||.
T Consensus       542 ~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~-----------~~ags~~pktkP~~~C~vc~yetniarnlrihmt  610 (1406)
T KOG1146|consen  542 LHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLG-----------PSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMT  610 (1406)
T ss_pred             hhHHHHHHHHhccccchhhhhhhhcccCcccccCC-----------CCCCCCCCCCCCCcchhhhcchhhhhhccccccc
Confidence            3221100000000          011111100000           0000010122345889999998888888999986


Q ss_pred             HhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHH
Q psy4065         136 RAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI  172 (348)
Q Consensus       136 ~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~  172 (348)
                      ..+.       -..|-.|--|+-.+.....+..+-+.
T Consensus       611 ss~~-------s~~p~~~Lq~~it~~l~~~~~~~~~l  640 (1406)
T KOG1146|consen  611 ASPS-------SSPPSLVLQQNITSSLASLLGGQGRL  640 (1406)
T ss_pred             cCCC-------CCChHHHhhhcchhhccccccCcCCC
Confidence            5444       12224444455455444444444333

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.54  E-value=4.1e-05  Score=40.45  Aligned_cols=25  Identities=32%  Similarity=0.767  Sum_probs=17.4

Q ss_pred             cccccccccccCChHHHHHHHHHhc
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h   30 (348)
                      ||+|..|++.|.+...|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5677777777777777777765554

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.45  E-value=3.8e-05  Score=39.29  Aligned_cols=24  Identities=50%  Similarity=0.711  Sum_probs=20.4

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhcC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      |+|..|++... ...|..|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999999998 9999999999985

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.45  E-value=0.00018  Score=61.14  Aligned_cols=114  Identities=19%  Similarity=0.262  Sum_probs=68.1

Q ss_pred             Cccccc--cccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc
Q psy4065          42 PFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV  119 (348)
Q Consensus        42 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~  119 (348)
                      .|.|+.  |......-..|..|.+..|+...-...-.....-+|....=+...|..|...-....    +- ..-=.|.+
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~----GF-KGHP~C~F  225 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEE----GF-KGHPLCIF  225 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCcccc----Cc-CCCchhhh
Confidence            488987  777777778899999988775321111001111122222223344444422111110    00 11126999


Q ss_pred             chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccc-------cCCHHHHHHHHHH
Q psy4065         120 CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKT-------FTRREHLRRHQQI  172 (348)
Q Consensus       120 C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~-------f~~~~~L~~H~~~  172 (348)
                      |...|-+...|..|++..|.            +|.+|+++       |.+...|..|.+.
T Consensus       226 C~~~FYdDDEL~~HcR~~HE------------~ChICD~v~p~~~QYFK~Y~~Le~HF~~  273 (493)
T COG5236         226 CKIYFYDDDELRRHCRLRHE------------ACHICDMVGPIRYQYFKSYEDLEAHFRN  273 (493)
T ss_pred             ccceecChHHHHHHHHhhhh------------hhhhhhccCccchhhhhCHHHHHHHhhc
Confidence            99999999999999987764            57777764       7888888888754

>KOG2231|consensus

Probab=97.45  E-value=0.00013  Score=68.60  Aligned_cols=96  Identities=22%  Similarity=0.288  Sum_probs=54.3

Q ss_pred             CChHHHHHHHHHhcCCCCCCCCCCCCcccccccc---------ccCCHHHHHHHHHHhhh-hhhhccccchhhccccccc
Q psy4065          17 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGK---------TFTRREHLRRHQQIHAR-ELLQSSMDMSALTGLAEEV   86 (348)
Q Consensus        17 ~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~---------~f~~~~~l~~H~~~h~~-~~~~~~~~~~~~~~~c~~~   86 (348)
                      .+...|+.|+...|.          .+.|.+|-.         ...+...|.+|++.-.. +...   ..-..|..|...
T Consensus       125 ~s~~~Lk~H~~~~H~----------~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~---rGhp~C~~C~~~  191 (669)
T KOG2231|consen  125 KSVENLKNHMRDQHK----------LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESC---RGHPLCKFCHER  191 (669)
T ss_pred             hHHHHHHHHHHHhhh----------hhccccccccceeeeeeeehehHHHHHHHHhcCCCccccc---cCCccchhhhhh
Confidence            377788888766664          455555431         12234556666654333 2111   113446677777


Q ss_pred             CCCcchhhhhhhhhhhhhhccCCCcccCcccCcc------hhhcCCHHHHHHHHHHhC
Q psy4065          87 FPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVC------NQGFVRKEHLVRHRKRAH  138 (348)
Q Consensus        87 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C------~~~f~~~~~L~~H~~~~h  138 (348)
                      |-....|..|++..|             |.|.+|      +-.|.+...|..|.+.+|
T Consensus       192 fld~~el~rH~~~~h-------------~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  192 FLDDDELYRHLRFDH-------------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             hccHHHHHHhhccce-------------eheeecCcccccchhcccchHHHHHhhhcC
Confidence            777777777754333             345455      345666677777776665

>KOG1146|consensus

Probab=97.30  E-value=0.00015  Score=72.23  Aligned_cols=61  Identities=23%  Similarity=0.431  Sum_probs=49.7

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCC-----------------CCCCCCCCccccccccccCCHHHHHHHHHHh
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDP-----------------PEGAEAKPFSCSVCGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~-----------------~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h  173 (348)
                      +-|+|+.|+..|+....|..||+..|....                 .-....++|.|..|.+.+..+..|..|++..
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~  541 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSD  541 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHH
Confidence            678999999999999999999999653211                 0112357899999999999999999999774

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.21  E-value=0.00028  Score=36.03  Aligned_cols=23  Identities=26%  Similarity=0.723  Sum_probs=10.5

Q ss_pred             ccccccccccCCHHHHHHHHHHhh
Q psy4065          43 FSCSVCGKTFTRREHLRRHQQIHA   66 (348)
Q Consensus        43 ~~C~~C~~~f~~~~~l~~H~~~h~   66 (348)
                      |+|+.|++... ...|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            34555555554 445555555443

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.13  E-value=0.00049  Score=41.14  Aligned_cols=31  Identities=29%  Similarity=0.689  Sum_probs=18.5

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         147 EAKPFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      ...|-+|++|+..++...+|++|+.+.|+.+
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            4567777777777777777777777766643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.10  E-value=0.00029  Score=36.52  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=21.0

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHh
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      |.|..|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            67999999999999999999843

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.07  E-value=0.00014  Score=37.57  Aligned_cols=23  Identities=39%  Similarity=0.749  Sum_probs=21.3

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHh
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999999865

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.02  E-value=0.00055  Score=40.94  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=24.5

Q ss_pred             CCCCCCCcchhhHHhhhhhHHHHHHHHHhcCCCC
Q psy4065         282 RPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDP  315 (348)
Q Consensus       282 ~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~~~~  315 (348)
                      .....|-.|++|+..+....+|++|+.+.|...+
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3455677899999999999999999999997765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.80  E-value=0.0011  Score=34.20  Aligned_cols=23  Identities=35%  Similarity=0.930  Sum_probs=16.5

Q ss_pred             ccccccccccCCHHHHHHHHHHh
Q psy4065         151 FSCSVCGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       151 ~~C~~C~~~f~~~~~L~~H~~~h  173 (348)
                      |.|..|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46777777777777777777654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.80  E-value=0.0007  Score=34.86  Aligned_cols=22  Identities=36%  Similarity=0.916  Sum_probs=13.9

Q ss_pred             ccccccccccCCHHHHHHHHHH
Q psy4065         151 FSCSVCGKTFTRREHLRRHQQI  172 (348)
Q Consensus       151 ~~C~~C~~~f~~~~~L~~H~~~  172 (348)
                      |.|.+|+..|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4566666666666666666654

>KOG2785|consensus

Probab=96.77  E-value=0.0049  Score=53.71  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=31.1

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhcCCCCCCCcccCCC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLHNIDPPPSSRNKQV  324 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~  324 (348)
                      --|.+|++.|.+...-..||..+|+.--|-..+....
T Consensus       167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~  203 (390)
T KOG2785|consen  167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDE  203 (390)
T ss_pred             cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhch
Confidence            3599999999999999999999999987765554444

>KOG2482|consensus

Probab=96.58  E-value=0.0017  Score=55.42  Aligned_cols=169  Identities=16%  Similarity=0.222  Sum_probs=97.1

Q ss_pred             CCccccccccccc-CChHHHHHHHHHhcCCCCCC--------------CCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065           4 VRPFQCDVCNQGF-VRKEHLVRHRKRAHDLDPPE--------------GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         4 ~~~y~C~~C~~~f-~~~~~l~~H~~~~h~~~~~~--------------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      .+--+|-+|+..+ .+++....|+-..|+.....              ..+-..+.|-+|.+.|+.+..|+.||+...-.
T Consensus       142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hr  221 (423)
T KOG2482|consen  142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHR  221 (423)
T ss_pred             eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCc
Confidence            3456899999976 48889999998888755331              11224589999999999999999999754321


Q ss_pred             --hhhccccc-hhhccc--ccccC-CCcchhhhhhhhhhhh-----hhcc-CCCcccCcccCcchhhcCCHHHHHHHHHH
Q psy4065          69 --LLQSSMDM-SALTGL--AEEVF-PTPLRLDENVRRWVAC-----QRIE-GIDVVRPFQCDVCNQGFVRKEHLVRHRKR  136 (348)
Q Consensus        69 --~~~~~~~~-~~~~~~--c~~~~-~~~~~l~~h~~~~~~~-----~~~~-~~~~~~~~~C~~C~~~f~~~~~L~~H~~~  136 (348)
                        .|....-- -|..+.  -+.+. ........-+..-+..     +--. .+...-...|..|...+.+...|..||..
T Consensus       222 rinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~  301 (423)
T KOG2482|consen  222 RINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKI  301 (423)
T ss_pred             ccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHH
Confidence              11000000 000000  00000 0000000000000000     0000 00001126899999999999999999999


Q ss_pred             hCCCCCCCCC-------------------CCCCccccccccccCCHHHHHHHHHH
Q psy4065         137 AHDLDPPEGA-------------------EAKPFSCSVCGKTFTRREHLRRHQQI  172 (348)
Q Consensus       137 ~h~~~~~~~~-------------------~~~~~~C~~C~~~f~~~~~L~~H~~~  172 (348)
                      .|..+---..                   ....-.|-.|.-.|-....|..||.-
T Consensus       302 vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e  356 (423)
T KOG2482|consen  302 VHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE  356 (423)
T ss_pred             HHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence            9965311000                   12345788899999999999999854

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.51  E-value=0.00036  Score=36.74  Aligned_cols=23  Identities=39%  Similarity=0.712  Sum_probs=21.4

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHh
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      |.|..|++.|.+...|..|++..
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            78999999999999999999864

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2785|consensus

Probab=96.44  E-value=0.011  Score=51.60  Aligned_cols=174  Identities=20%  Similarity=0.258  Sum_probs=102.5

Q ss_pred             cccccccccccCChHHHHHHHHHhc-C---------CCCC-------------------CCCCCCCccccccccccCCHH
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAH-D---------LDPP-------------------EGAEAKPFSCSVCGKTFTRRE   56 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h-~---------~~~~-------------------~~~~~~~~~C~~C~~~f~~~~   56 (348)
                      -|.|.-|...|.+...-+.|++.-+ -         .++.                   ......++.|.+|.+.|.+..
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~   82 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK   82 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence            4899999999999999999987653 1         1111                   134456899999999999999


Q ss_pred             HHHHHHHHhhhhhhhcc------ccchhh-----------------cccccccCCCcchhhhhhhh---hhhhhhccCCC
Q psy4065          57 HLRRHQQIHARELLQSS------MDMSAL-----------------TGLAEEVFPTPLRLDENVRR---WVACQRIEGID  110 (348)
Q Consensus        57 ~l~~H~~~h~~~~~~~~------~~~~~~-----------------~~~c~~~~~~~~~l~~h~~~---~~~~~~~~~~~  110 (348)
                      ....|+..-.......-      .+....                 ...+.+..........+...   ..-........
T Consensus        83 a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~~~e~  162 (390)
T KOG2785|consen   83 AHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDGDDED  162 (390)
T ss_pred             hHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhccchhc
Confidence            99999865432211000      000000                 00111111110000000000   00000000000


Q ss_pred             cccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCC---------------CCCCccccccc---cccCCHHHHHHHHHH
Q psy4065         111 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGA---------------EAKPFSCSVCG---KTFTRREHLRRHQQI  172 (348)
Q Consensus       111 ~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~---------------~~~~~~C~~C~---~~f~~~~~L~~H~~~  172 (348)
                      ..-|--|.+|+..+.+-..-..||..+|+..=|.-.               ....|.|-.|+   +.|.+....+.||..
T Consensus       163 e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  163 ELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             ccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            013467999999999999999999999986543211               13468899999   999999999999954


Q ss_pred             -hhhhccc
Q psy4065         173 -HARELLQ  179 (348)
Q Consensus       173 -h~~~~~~  179 (348)
                       -|-..++
T Consensus       243 K~HCkl~y  250 (390)
T KOG2785|consen  243 KGHCKLPY  250 (390)
T ss_pred             ccCcccCC
Confidence             3333444

>KOG2231|consensus

Probab=96.29  E-value=0.057  Score=51.46  Aligned_cols=115  Identities=19%  Similarity=0.245  Sum_probs=76.8

Q ss_pred             cccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhh
Q psy4065          44 SCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQG  123 (348)
Q Consensus        44 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~  123 (348)
                      .|..| -.|.+...|+.|+..-|+...-...-......++.....+...|..|+..-.......-+    --.|..|...
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rG----hp~C~~C~~~  191 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRG----HPLCKFCHER  191 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccC----Cccchhhhhh
Confidence            69999 889999999999977666544222222333345556666677777776654442222211    2479999999


Q ss_pred             cCCHHHHHHHHHHhCCCCCCCCCCCCCccccccc------cccCCHHHHHHHHHHhhh
Q psy4065         124 FVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG------KTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       124 f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~------~~f~~~~~L~~H~~~h~~  175 (348)
                      |.+...|.+||+.+|            |-|.+|.      ..|.....|..|.+.+|-
T Consensus       192 fld~~el~rH~~~~h------------~~chfC~~~~~~neyy~~~~dLe~HfR~~Hf  237 (669)
T KOG2231|consen  192 FLDDDELYRHLRFDH------------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHF  237 (669)
T ss_pred             hccHHHHHHhhccce------------eheeecCcccccchhcccchHHHHHhhhcCc
Confidence            999999999997665            4565653      346677777777766544

>KOG4173|consensus

Probab=96.25  E-value=0.0032  Score=49.72  Aligned_cols=109  Identities=24%  Similarity=0.424  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHhcC----CCCCCCCCCCCccccc--cccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcch
Q psy4065          19 KEHLVRHRKRAHD----LDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLR   92 (348)
Q Consensus        19 ~~~l~~H~~~~h~----~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~   92 (348)
                      ...+.+|+...--    .+..+......|.|++  |...|....+...|+.+-|+.          .|..|.+.|++..-
T Consensus        52 ~G~v~r~l~~~~V~~d~~d~~~~~~~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~----------sCs~C~r~~Pt~hL  121 (253)
T KOG4173|consen   52 DGDVQRHLYLQDVIMDVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN----------SCSFCKRAFPTGHL  121 (253)
T ss_pred             cccHHHHHhHhhheeeccccccccccccccccccchHHHHhhhhhHHHhhhhcccc----------hhHHHHHhCCchhh
Confidence            4455556543321    2223345567899998  888898888888998766654          37788888888888


Q ss_pred             hhhhhhhhhhh---hhccCCCcccCcccCc--chhhcCCHHHHHHHHHHhCC
Q psy4065          93 LDENVRRWVAC---QRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        93 l~~h~~~~~~~---~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~  139 (348)
                      |..|+...|..   -.++.+.  ..|.|-.  |+..|++...-.+||...|.
T Consensus       122 Ld~HI~E~HDs~Fqa~veRG~--dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  122 LDAHILEWHDSLFQALVERGQ--DMYQCLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             hhHHHHHHHHHHHHHHHHcCc--cHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            88888887765   2222222  4678844  88888888888888887776

>KOG4173|consensus

Probab=96.02  E-value=0.0054  Score=48.46  Aligned_cols=53  Identities=28%  Similarity=0.479  Sum_probs=45.6

Q ss_pred             cCcccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       113 ~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ..|.|++  |...|.+...+..|...-|+           ..|.+|.+.|.+...|-.|+..-|..
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~-----------~sCs~C~r~~Pt~hLLd~HI~E~HDs  132 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHG-----------NSCSFCKRAFPTGHLLDAHILEWHDS  132 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhccc-----------chhHHHHHhCCchhhhhHHHHHHHHH
Confidence            6689987  99999999989999877776           68999999999999999998765554

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=95.92  E-value=0.013  Score=42.89  Aligned_cols=25  Identities=16%  Similarity=0.498  Sum_probs=24.1

Q ss_pred             Ccc----hhhHHhhhhhHHHHHHHHHhcC
Q psy4065         288 PKC----DVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       288 y~C----~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      |.|    ..|++.+.+...++.|++.+|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            899    9999999999999999999996

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.76  E-value=0.002  Score=33.84  Aligned_cols=21  Identities=38%  Similarity=0.844  Sum_probs=13.6

Q ss_pred             cccCcchhhcCCHHHHHHHHH
Q psy4065         115 FQCDVCNQGFVRKEHLVRHRK  135 (348)
Q Consensus       115 ~~C~~C~~~f~~~~~L~~H~~  135 (348)
                      |.|..|++.|.+...|..|+.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            556666666666666666653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=95.11  E-value=0.01  Score=36.08  Aligned_cols=29  Identities=28%  Similarity=0.565  Sum_probs=14.7

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      ++-.++|+-|+..|+....+.+|+...|+
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            34445555555555555555555554443

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.95  E-value=0.024  Score=29.08  Aligned_cols=20  Identities=35%  Similarity=1.104  Sum_probs=10.6

Q ss_pred             cccccccccCCHHHHHHHHHH
Q psy4065         152 SCSVCGKTFTRREHLRRHQQI  172 (348)
Q Consensus       152 ~C~~C~~~f~~~~~L~~H~~~  172 (348)
                      .|+.|++.| ....|..|+..
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHh
Confidence            455555555 44555555443

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.91  E-value=0.011  Score=33.13  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=21.9

Q ss_pred             CCcchhhHHhhhhhHHHHHHHHHh
Q psy4065         287 IPKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       287 ~y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      +|.|.+|+..|.+...+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            488999999999999999999765

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482|consensus

Probab=94.84  E-value=0.21  Score=43.13  Aligned_cols=26  Identities=23%  Similarity=0.589  Sum_probs=23.7

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhcCC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLHNI  313 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H~~  313 (348)
                      -+|-+|...+-+...|..||..+|..
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~  305 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEF  305 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHh
Confidence            36999999999999999999999944

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.33  E-value=0.043  Score=28.08  Aligned_cols=20  Identities=30%  Similarity=0.841  Sum_probs=13.9

Q ss_pred             ccccccccccCChHHHHHHHH
Q psy4065           7 FQCDVCNQGFVRKEHLVRHRK   27 (348)
Q Consensus         7 y~C~~C~~~f~~~~~l~~H~~   27 (348)
                      ..|+.|++.| ....|..|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            4677777777 5677777754

>KOG2893|consensus

Probab=93.99  E-value=0.07  Score=43.40  Aligned_cols=51  Identities=35%  Similarity=0.736  Sum_probs=43.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHH-HHHhhhh
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQIHARE  176 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~  176 (348)
                      ++| |=+|++-|.+..-|..|..            .+-|+|.+|-+...+-..|..| +++|...
T Consensus        10 kpw-cwycnrefddekiliqhqk------------akhfkchichkkl~sgpglsihcmqvhket   61 (341)
T KOG2893|consen   10 KPW-CWYCNREFDDEKILIQHQK------------AKHFKCHICHKKLFSGPGLSIHCMQVHKET   61 (341)
T ss_pred             Cce-eeecccccchhhhhhhhhh------------hccceeeeehhhhccCCCceeehhhhhhhh
Confidence            666 8899999999999999984            4569999999999999999999 5666553

>PRK04860 hypothetical protein; Provisional

Probab=93.99  E-value=0.024  Score=44.30  Aligned_cols=25  Identities=28%  Similarity=0.728  Sum_probs=21.5

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      ..+|.|. |+.   ....+++|.++|.++
T Consensus       117 ~~~Y~C~-C~~---~~~~~rrH~ri~~g~  141 (160)
T PRK04860        117 TFPYRCK-CQE---HQLTVRRHNRVVRGE  141 (160)
T ss_pred             EEEEEcC-CCC---eeCHHHHHHHHhcCC
Confidence            3579998 987   678899999999998

>PRK04860 hypothetical protein; Provisional

Probab=93.91  E-value=0.033  Score=43.51  Aligned_cols=39  Identities=23%  Similarity=0.714  Sum_probs=32.5

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCH
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRR  163 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~  163 (348)
                      -+|.|. |+.   ....+.+|.+.+.+        .++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g--------~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRG--------EAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcC--------CccEECCCCCceeEEe
Confidence            469998 987   66778999988877        7899999999988654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.89  E-value=0.042  Score=30.69  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=18.1

Q ss_pred             CccccccccccCCHHHHHHHHHH
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQI  172 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~  172 (348)
                      +|.|.+|+..|.+...+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            57788888888888888888754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.54  E-value=0.051  Score=33.14  Aligned_cols=34  Identities=29%  Similarity=0.621  Sum_probs=29.1

Q ss_pred             CCCCCCCCcchhhHHhhhhhHHHHHHHHHhcCCC
Q psy4065         281 ERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNID  314 (348)
Q Consensus       281 ~~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~~~  314 (348)
                      ...++--++|+-|+..|....++.+|++..|+-.
T Consensus        11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~~   44 (65)
T COG4049          11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGWL   44 (65)
T ss_pred             ccCCceeeeCCchhHHHHHhHHHHHHhhHHhhhh
Confidence            3456666899999999999999999999999654

>KOG2893|consensus

Probab=93.49  E-value=0.022  Score=46.21  Aligned_cols=56  Identities=29%  Similarity=0.597  Sum_probs=46.8

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhc
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQS   72 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   72 (348)
                      .||+ |=.|++.|....-|..|.+..|            |+|.+|-+...+--.|..|....|++...+
T Consensus         9 ~kpw-cwycnrefddekiliqhqkakh------------fkchichkkl~sgpglsihcmqvhketid~   64 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQKAKH------------FKCHICHKKLFSGPGLSIHCMQVHKETIDK   64 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhhhcc------------ceeeeehhhhccCCCceeehhhhhhhhhhc
Confidence            4564 7799999999999999987665            699999999888889999998888875433

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=93.38  E-value=0.17  Score=36.93  Aligned_cols=62  Identities=18%  Similarity=0.399  Sum_probs=45.4

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC-CCCC---------------------------------CCCCCCCccc----c
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD-LDPP---------------------------------EGAEAKPFSC----S   46 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~-~~~~---------------------------------~~~~~~~~~C----~   46 (348)
                      +...|..|+..+.. ..+..|++..|. ....                                 +-.-...|.|    .
T Consensus        10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~   88 (109)
T PF12013_consen   10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPP   88 (109)
T ss_pred             CEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCC
Confidence            34579999997765 999999995542 2100                                 0011145999    9


Q ss_pred             ccccccCCHHHHHHHHHHhhh
Q psy4065          47 VCGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus        47 ~C~~~f~~~~~l~~H~~~h~~   67 (348)
                      .|++.+.+...|+.|++.+|+
T Consensus        89 ~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   89 HCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCCcEeccHHHHHHHHHHhcC
Confidence            999999999999999998875

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=91.27  E-value=0.1  Score=28.82  Aligned_cols=25  Identities=36%  Similarity=0.965  Sum_probs=18.5

Q ss_pred             ccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccc
Q psy4065           7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKT   51 (348)
Q Consensus         7 y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~   51 (348)
                      |+|..||+.+....                    .++.|+.|+..
T Consensus         2 ~~C~~CGy~y~~~~--------------------~~~~CP~Cg~~   26 (33)
T cd00350           2 YVCPVCGYIYDGEE--------------------APWVCPVCGAP   26 (33)
T ss_pred             EECCCCCCEECCCc--------------------CCCcCcCCCCc
Confidence            78999998764322                    57899999863

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.57  E-value=0.023  Score=52.64  Aligned_cols=149  Identities=26%  Similarity=0.426  Sum_probs=92.9

Q ss_pred             CcccccccccccCChHHHHHHHH--HhcCCCCCCCCCC--CCcccc--ccccccCCHHHHHHHHHHhhhhhhhccccchh
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRK--RAHDLDPPEGAEA--KPFSCS--VCGKTFTRREHLRRHQQIHARELLQSSMDMSA   78 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~--~~h~~~~~~~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~   78 (348)
                      .++.|..|...|.+...|..|..  .|.+        +  .++.|+  +|++.|.+...+..|...|.+.....+...  
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~--------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  357 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSG--------ESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLL--  357 (467)
T ss_pred             cCCCCccccCCcccccccccccccccccc--------ccCCceeeeccCCCccccccccccCCcccccCCCccccccc--
Confidence            47899999999999999999988  4544        5  899999  799999999999999999988754443311  


Q ss_pred             hcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065          79 LTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus        79 ~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                         .+...+.....-..+...    ...........+.|..  |-..+.....+..|...+..      .....+.+..|
T Consensus       358 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  424 (467)
T COG5048         358 ---NSSSKFSPLLNNEPPQSL----QQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLS------FRPYNCKNPPC  424 (467)
T ss_pred             ---cCccccccccCCCCccch----hhccCccCCccccccccchhhhhccccccccccccccc------cCCcCCCCCcc
Confidence               111111111110000000    0000001113344422  66666776777777655544      22345677778


Q ss_pred             ccccCCHHHHHHHHHHhhhh
Q psy4065         157 GKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       157 ~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ...+.....+..|++.|...
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~  444 (467)
T COG5048         425 SKSFNRHYNLIPHKKIHTNH  444 (467)
T ss_pred             hhhccCcccccccccccccC
Confidence            88888888888777766554

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=89.56  E-value=0.8  Score=39.77  Aligned_cols=24  Identities=21%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHH
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKR  136 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~  136 (348)
                      ..+.|..|++.|...+-+..|+..
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~g  260 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEG  260 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhh
Confidence            567899999999999999999865

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=88.75  E-value=0.11  Score=48.09  Aligned_cols=60  Identities=37%  Similarity=0.737  Sum_probs=51.5

Q ss_pred             CcccCcchhhcCCHHHHHHHHH--HhCCCCCCCCCCC--CCcccc--ccccccCCHHHHHHHHHHhhhhccccc
Q psy4065         114 PFQCDVCNQGFVRKEHLVRHRK--RAHDLDPPEGAEA--KPFSCS--VCGKTFTRREHLRRHQQIHARELLQSS  181 (348)
Q Consensus       114 ~~~C~~C~~~f~~~~~L~~H~~--~~h~~~~~~~~~~--~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~~  181 (348)
                      ++.|..|...|.....|.+|+.  .|..        +  +++.|+  +|++.|.+...+..|...|.+......
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~--------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSG--------ESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE  354 (467)
T ss_pred             CCCCccccCCcccccccccccccccccc--------ccCCceeeeccCCCccccccccccCCcccccCCCcccc
Confidence            6889999999999999999998  4444        5  899999  799999999999999999888654433

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=87.72  E-value=0.19  Score=28.70  Aligned_cols=34  Identities=21%  Similarity=0.563  Sum_probs=23.7

Q ss_pred             ccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccC
Q psy4065           7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT   53 (348)
Q Consensus         7 y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~   53 (348)
                      +.|+.|+..|........-             ......|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~~~-------------~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLGA-------------NGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHcCC-------------CCCEEECCCCCCEEE
Confidence            6899999998755543221             234688999998764

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.50  E-value=0.29  Score=29.08  Aligned_cols=27  Identities=48%  Similarity=0.751  Sum_probs=18.8

Q ss_pred             CCCCcchhhHHhhhhh----HHHHHHHHHhc
Q psy4065         285 KPIPKCDVCKKVFSRR----SHLLRHLKRLH  311 (348)
Q Consensus       285 ~~~y~C~~C~~~f~~~----~~L~~H~~~~H  311 (348)
                      ....+|.+|++.+...    ..|.+|++..|
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            3457899999999885    89999997766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG2186|consensus

Probab=87.16  E-value=0.33  Score=40.15  Aligned_cols=53  Identities=30%  Similarity=0.651  Sum_probs=42.1

Q ss_pred             CcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       114 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      .|.|..||-.... -.|.+||..-++         ..|.|-.|+..|.. ..+..|...-....
T Consensus         3 ~FtCnvCgEsvKK-p~vekH~srCrn---------~~fSCIDC~k~F~~-~sYknH~kCITEaQ   55 (276)
T KOG2186|consen    3 FFTCNVCGESVKK-PQVEKHMSRCRN---------AYFSCIDCGKTFER-VSYKNHTKCITEAQ   55 (276)
T ss_pred             EEehhhhhhhccc-cchHHHHHhccC---------CeeEEeeccccccc-chhhhhhhhcchHH
Confidence            4899999998764 678889955543         78999999999988 88999987655443

>PF12907 zf-met2: Zinc-binding

Probab=86.80  E-value=0.51  Score=27.18  Aligned_cols=33  Identities=18%  Similarity=0.391  Sum_probs=25.5

Q ss_pred             CcchhhHHhhh---hhHHHHHHHHHhcCCCCCCCcc
Q psy4065         288 PKCDVCKKVFS---RRSHLLRHLKRLHNIDPPPSSR  320 (348)
Q Consensus       288 y~C~~C~~~f~---~~~~L~~H~~~~H~~~~p~~~~  320 (348)
                      +.|.+|..+|.   ....|..|....|...++..+.
T Consensus         2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~~~~~CF   37 (40)
T PF12907_consen    2 IICKICRQTFMQTTNEPQLKEHAENKHPKNTFEECF   37 (40)
T ss_pred             cCcHHhhHHHHhcCCHHHHHHHHHccCCCCCHHHcC
Confidence            68999996664   4577999999999886655443

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=86.14  E-value=0.62  Score=29.11  Aligned_cols=33  Identities=24%  Similarity=0.582  Sum_probs=19.3

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccc
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKT   51 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~   51 (348)
                      -|.|+.||..-..+-.-    -..+         ..+|.|+.||+.
T Consensus        27 ~F~CPnCGe~~I~Rc~~----CRk~---------g~~Y~Cp~CGF~   59 (61)
T COG2888          27 KFPCPNCGEVEIYRCAK----CRKL---------GNPYRCPKCGFE   59 (61)
T ss_pred             EeeCCCCCceeeehhhh----HHHc---------CCceECCCcCcc
Confidence            47788888643332221    1222         478899888864

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=85.78  E-value=0.39  Score=34.75  Aligned_cols=30  Identities=27%  Similarity=0.724  Sum_probs=19.6

Q ss_pred             cccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCH
Q psy4065         115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRR  163 (348)
Q Consensus       115 ~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~  163 (348)
                      ..|+.||.+|-....                   .|..|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYDLnk-------------------~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLNK-------------------DPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCCC-------------------CCccCCCCCCccCcc
Confidence            467777777766544                   256677777777655

The function of members of this family is unknown.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=85.70  E-value=0.25  Score=40.54  Aligned_cols=28  Identities=21%  Similarity=0.485  Sum_probs=22.8

Q ss_pred             CCCCCcchhhHHhhhhhHHHHHHHHHhc
Q psy4065         284 PKPIPKCDVCKKVFSRRSHLLRHLKRLH  311 (348)
Q Consensus       284 ~~~~y~C~~C~~~f~~~~~L~~H~~~~H  311 (348)
                      .+..|.|.+|+|.|.-...++.||.+.|
T Consensus        74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH  101 (214)
T PF04959_consen   74 DEDKWRCPLCGKLFKGPEFVRKHIFNKH  101 (214)
T ss_dssp             SSEEEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred             cCCEECCCCCCcccCChHHHHHHHhhcC
Confidence            4446999999999999999999999999

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>KOG0717|consensus

Probab=85.09  E-value=1.5  Score=39.79  Aligned_cols=30  Identities=33%  Similarity=0.707  Sum_probs=24.6

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHh-cCCCCCC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRL-HNIDPPP  317 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~-H~~~~p~  317 (348)
                      -.|.-|+.+|.++.-|..|+..- |+..++-
T Consensus       461 ~~C~tCr~~FdSRnkLF~Hlk~tgHa~~~~~  491 (508)
T KOG0717|consen  461 ISCTTCRESFDSRNKLFAHLKKTGHARLPSK  491 (508)
T ss_pred             HhhhhhhhhccchhHHHHHhhhcCCeecccc
Confidence            46999999999999999999876 5554443

>TIGR00622 ssl1 transcription factor ssl1

Probab=85.08  E-value=0.85  Score=33.03  Aligned_cols=23  Identities=35%  Similarity=0.730  Sum_probs=16.8

Q ss_pred             CCCccccccccccCCHHHHHHHH
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQ   62 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~   62 (348)
                      +.|..|++||...-...+|.+-.
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSy   35 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSY   35 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhh
Confidence            56788888888877776666653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4124|consensus

Probab=83.95  E-value=0.43  Score=41.34  Aligned_cols=63  Identities=11%  Similarity=0.014  Sum_probs=44.1

Q ss_pred             ccCcccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHH-HHHhhhhcc
Q psy4065         112 VRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQIHARELL  178 (348)
Q Consensus       112 ~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~~~  178 (348)
                      ++++.|..  |.+.+........|-...+..+.   +..++|+|. |++.+.++..|..| +..+.++..
T Consensus       176 E~~~S~~vp~~~~~~~~~Ns~~~~S~~~~~T~~---t~~~p~k~~-~~~~~~T~~~l~~HS~N~~~~~Sa  241 (442)
T KOG4124|consen  176 EYRVSVVVPAAAAAAAAANSSDMSSDEASSTAE---TTGTPKKMP-ESLVMDTSSPLSDHSMNIDVGESA  241 (442)
T ss_pred             cccccccCchhhhhhhccccccccccccccccc---cccCCccCc-ccccccccchhhhccccCCCCccH
Confidence            47788855  88877776666666554443221   236799998 99999999999999 466666543

>smart00531 TFIIE Transcription initiation factor IIE

Probab=83.25  E-value=0.68  Score=35.83  Aligned_cols=38  Identities=18%  Similarity=0.423  Sum_probs=23.7

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccccccc
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF   52 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f   52 (348)
                      .+.-|.|+.|+..|.....+..-    ..        ...|.|+.||...
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~~----d~--------~~~f~Cp~Cg~~l  133 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQLL----DM--------DGTFTCPRCGEEL  133 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHhc----CC--------CCcEECCCCCCEE
Confidence            34578888898888754433321    01        2348898888764

>PHA00626 hypothetical protein

Probab=83.09  E-value=0.32  Score=29.90  Aligned_cols=17  Identities=18%  Similarity=0.581  Sum_probs=13.3

Q ss_pred             CCCccccccccccCCHH
Q psy4065          40 AKPFSCSVCGKTFTRRE   56 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~   56 (348)
                      ...|.|+.||+.|...+
T Consensus        21 snrYkCkdCGY~ft~~~   37 (59)
T PHA00626         21 SDDYVCCDCGYNDSKDA   37 (59)
T ss_pred             CcceEcCCCCCeechhh
Confidence            36799999999987544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=82.84  E-value=0.18  Score=41.75  Aligned_cols=52  Identities=21%  Similarity=0.390  Sum_probs=31.7

Q ss_pred             CCcccccccccccCChHHHHHHHHHhc-CCCCCCC-CCCCC-----ccccccccccCCH
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAH-DLDPPEG-AEAKP-----FSCSVCGKTFTRR   55 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h-~~~~~~~-~~~~~-----~~C~~C~~~f~~~   55 (348)
                      .|.++||+|+..|.+..-.....+... ..|.-.. .+..|     +.||.||++|...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            467899999999987766555544321 1111000 11222     4699999998765

>KOG2071|consensus

Probab=82.78  E-value=1.3  Score=41.55  Aligned_cols=54  Identities=22%  Similarity=0.362  Sum_probs=35.4

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhhhhhccccc--hhhcccccccCCCcchh
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDM--SALTGLAEEVFPTPLRL   93 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~--~~~~~~c~~~~~~~~~l   93 (348)
                      ..+-+|..||.+|........||..|..+....-...  ...-..+...|+....+
T Consensus       416 ~~pnqC~~CG~R~~~~ee~sk~md~H~dwh~r~n~~~r~s~~~~~sR~Wf~s~s~W  471 (579)
T KOG2071|consen  416 DSPNQCKSCGLRFDDSEERSKHMDIHDDWHRRKNTTIRGSSKWQKSRSWFPSKSGW  471 (579)
T ss_pred             CCcchhcccccccccchhhhhHhhhhhhhhhhhhhhcccccccccccceeechhhh
Confidence            4568999999999999999999998887644332211  12233455555554433

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=82.52  E-value=0.82  Score=33.11  Aligned_cols=15  Identities=27%  Similarity=0.665  Sum_probs=10.7

Q ss_pred             CccccccccccCCHH
Q psy4065         150 PFSCSVCGKTFTRRE  164 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~  164 (348)
                      ...|+.||..|....
T Consensus         9 KR~Cp~CG~kFYDLn   23 (108)
T PF09538_consen    9 KRTCPSCGAKFYDLN   23 (108)
T ss_pred             cccCCCCcchhccCC
Confidence            457888888886644

The function of members of this family is unknown.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=82.41  E-value=0.84  Score=28.63  Aligned_cols=12  Identities=33%  Similarity=1.137  Sum_probs=8.1

Q ss_pred             CCCccccccccc
Q psy4065          40 AKPFSCSVCGKT   51 (348)
Q Consensus        40 ~~~~~C~~C~~~   51 (348)
                      ..+|.|+.||+.
T Consensus        46 ~~~Y~CP~CGF~   57 (59)
T PRK14890         46 SNPYTCPKCGFE   57 (59)
T ss_pred             CCceECCCCCCc
Confidence            356777777763

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=82.29  E-value=1.7  Score=36.22  Aligned_cols=94  Identities=19%  Similarity=0.340  Sum_probs=51.8

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccC
Q psy4065          39 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCD  118 (348)
Q Consensus        39 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~  118 (348)
                      +.+.|+|.+|... ....+--.|+.+-.     ......+.|..|.+.                          ..|.|.
T Consensus       139 GGrif~CsfC~~f-lCEDDQFEHQAsCQ-----vLe~E~~KC~SCNrl--------------------------Gq~sCL  186 (314)
T PF06524_consen  139 GGRIFKCSFCDNF-LCEDDQFEHQASCQ-----VLESETFKCQSCNRL--------------------------GQYSCL  186 (314)
T ss_pred             CCeEEEeecCCCe-eeccchhhhhhhhh-----hhhcccccccccccc--------------------------cchhhh
Confidence            3678999999754 33333335553221     112223444455432                          456777


Q ss_pred             cchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHh
Q psy4065         119 VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       119 ~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h  173 (348)
                      .|..-|-.     .|.++.-- .   -...+++.|+.|++....-..|.--.|+|
T Consensus       187 RCK~cfCd-----dHvrrKg~-k---y~k~k~~PCPKCg~et~eTkdLSmStR~h  232 (314)
T PF06524_consen  187 RCKICFCD-----DHVRRKGF-K---YEKGKPIPCPKCGYETQETKDLSMSTRSH  232 (314)
T ss_pred             heeeeehh-----hhhhhccc-c---cccCCCCCCCCCCCcccccccceeeeecc
Confidence            77666654     34333211 0   01357999999999887777665444444

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=81.97  E-value=0.55  Score=28.09  Aligned_cols=31  Identities=19%  Similarity=0.537  Sum_probs=21.7

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT   53 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~   53 (348)
                      ..|+|+.||..|....                  ....+.|++||..+.
T Consensus         2 ~~y~C~~CG~~~~~~~------------------~~~~~~Cp~CG~~~~   32 (46)
T PRK00398          2 AEYKCARCGREVELDE------------------YGTGVRCPYCGYRIL   32 (46)
T ss_pred             CEEECCCCCCEEEECC------------------CCCceECCCCCCeEE
Confidence            4799999999874311                  122689999997654

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=81.71  E-value=0.53  Score=26.50  Aligned_cols=34  Identities=21%  Similarity=0.623  Sum_probs=23.8

Q ss_pred             ccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccC
Q psy4065           7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT   53 (348)
Q Consensus         7 y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~   53 (348)
                      ..|+.|+..|........      +       .....+|+.|+..|.
T Consensus         3 i~Cp~C~~~y~i~d~~ip------~-------~g~~v~C~~C~~~f~   36 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEKIP------P-------KGRKVRCSKCGHVFF   36 (36)
T ss_pred             EECCCCCCEEeCCHHHCC------C-------CCcEEECCCCCCEeC
Confidence            579999999875554321      1       346789999998773

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=81.56  E-value=0.88  Score=35.65  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=25.7

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccC
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT   53 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~   53 (348)
                      ++.-|.|+.|+..|....++.                 ..|.|+.||....
T Consensus       106 ~~~~Y~Cp~c~~r~tf~eA~~-----------------~~F~Cp~Cg~~L~  139 (158)
T TIGR00373       106 NNMFFICPNMCVRFTFNEAME-----------------LNFTCPRCGAMLD  139 (158)
T ss_pred             CCCeEECCCCCcEeeHHHHHH-----------------cCCcCCCCCCEee
Confidence            456789999998887777774                 1389999997643

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=81.50  E-value=0.77  Score=25.45  Aligned_cols=26  Identities=27%  Similarity=0.700  Sum_probs=18.3

Q ss_pred             CcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccc
Q psy4065         114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKT  159 (348)
Q Consensus       114 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~  159 (348)
                      .|.|..||..+...                    ..|..|++|+..
T Consensus         2 ~~~C~~CG~i~~g~--------------------~~p~~CP~Cg~~   27 (34)
T cd00729           2 VWVCPVCGYIHEGE--------------------EAPEKCPICGAP   27 (34)
T ss_pred             eEECCCCCCEeECC--------------------cCCCcCcCCCCc
Confidence            47899999775431                    246799999863

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=80.84  E-value=1.8  Score=37.68  Aligned_cols=28  Identities=29%  Similarity=0.662  Sum_probs=21.5

Q ss_pred             CCccccccccccCCHHHHHHHH--HHhhhh
Q psy4065          41 KPFSCSVCGKTFTRREHLRRHQ--QIHARE   68 (348)
Q Consensus        41 ~~~~C~~C~~~f~~~~~l~~H~--~~h~~~   68 (348)
                      ..+.|..|++.|....-+..|.  +.|..+
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~  266 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKE  266 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhhhhhhhh
Confidence            4578999999999888888888  445544

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=80.81  E-value=0.71  Score=26.15  Aligned_cols=33  Identities=24%  Similarity=0.660  Sum_probs=23.8

Q ss_pred             ccccccccccCChHH-HHHHHHHhcCCCCCCCCCCCCccccccccccC
Q psy4065           7 FQCDVCNQGFVRKEH-LVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT   53 (348)
Q Consensus         7 y~C~~C~~~f~~~~~-l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~   53 (348)
                      .+|+.|+..|..... |..              .....+|+.|+-.|.
T Consensus         3 i~CP~C~~~f~v~~~~l~~--------------~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDKLPA--------------GGRKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHHccc--------------CCcEEECCCCCcEee
Confidence            579999999875543 222              256789999998774

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=80.46  E-value=0.55  Score=35.30  Aligned_cols=25  Identities=36%  Similarity=0.634  Sum_probs=17.2

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhcCCCC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLHNIDP  315 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H~~~~  315 (348)
                      -.|-+||+.|...   ++|++.||+..+
T Consensus        73 i~clecGk~~k~L---krHL~~~~gltp   97 (132)
T PF05443_consen   73 IICLECGKKFKTL---KRHLRTHHGLTP   97 (132)
T ss_dssp             EE-TBT--EESBH---HHHHHHTT-S-H
T ss_pred             eEEccCCcccchH---HHHHHHccCCCH
Confidence            5799999999875   999999997653

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=80.26  E-value=0.73  Score=27.82  Aligned_cols=31  Identities=19%  Similarity=0.627  Sum_probs=22.2

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccc
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKT   51 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~   51 (348)
                      ...-|+|..|++.|..         ..         ......|++||..
T Consensus         3 ~~~~Y~C~~Cg~~~~~---------~~---------~~~~irCp~Cg~r   33 (49)
T COG1996           3 AMMEYKCARCGREVEL---------DQ---------ETRGIRCPYCGSR   33 (49)
T ss_pred             ceEEEEhhhcCCeeeh---------hh---------ccCceeCCCCCcE
Confidence            3467999999998810         00         2467899999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-13
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-07
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		6e-04
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		8e-07
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		8e-07
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		9e-07
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		9e-07
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-06
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-06
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-06
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-06
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-06
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-06
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-06
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		3e-06
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		3e-06
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		5e-06
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		5e-06
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		8e-06
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		2e-05
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		2e-04
1x6h_A	86	Solution Structures Of The C2h2 Type Zinc Finger Do		6e-05
1x6h_A	86	Solution Structures Of The C2h2 Type Zinc Finger Do		6e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		1e-04
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		1e-04
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		2e-04
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		2e-04
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		2e-04
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		2e-04
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		3e-04
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		3e-04
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		4e-04
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		4e-04
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		5e-04
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		5e-04
2emc_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-04
2emc_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-04
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		7e-04
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		7e-04
2ep2_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04
2ep2_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 32/170 (18%)
Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P++C  C + F  K+ L RH +R H  +       KP+ C  CGK+F++R +LR HQ+ 
Sbjct: 48  KPYKCPECGKSFSDKKDLTRH-QRTHTGE-------KPYKCPECGKSFSQRANLRAHQRT 99
Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
           H              TG      P   +    +    A QR    +  +P++C  C + F
Sbjct: 100 H--------------TGEKPYACPECGKSFSQLAHLRAHQRTHTGE--KPYKCPECGKSF 143
Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 174
            R+++L  H +R H  +       KP+ C  CGK+F+RR+ L  HQ+ H 
Sbjct: 144 SREDNLHTH-QRTHTGE-------KPYKCPECGKSFSRRDALNVHQRTHT 185

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 52/133 (39%)
Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
           KP+ C  CGK+F++  +L++HQ+ H  E                                
Sbjct: 3   KPYKCPECGKSFSQSSNLQKHQRTHTGE-------------------------------- 30
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
                       +P++C  C + F +   L +H+ R H  +       KP+ C  CGK+F
Sbjct: 31  ------------KPYKCPECGKSFSQSSDLQKHQ-RTHTGE-------KPYKCPECGKSF 70
Query: 161 TRREHLRRHQQIH 173
           +R +HL RHQ+ H
Sbjct: 71  SRSDHLSRHQRTH 83

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 111 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
           + +P++C  C + F +  +L +H+ R H  +       KP+ C  CGK+F++   L++HQ
Sbjct: 1   MEKPYKCPECGKSFSQSSNLQKHQ-RTHTGE-------KPYKCPECGKSFSQSSDLQKHQ 52
Query: 171 QIHARE 176
           + H  E
Sbjct: 53  RTHTGE 58

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +PFQC +C + F R +HL  H  R H          KPF+C +CG+ F R +  +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
          H R+
Sbjct: 85 HLRQ 88

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +PFQC +C + F R +HL  H  R H          KPF+C +CG+ F R +  +RH +I
Sbjct: 33  KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 173 HARE 176
           H R+
Sbjct: 85  HLRQ 88

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +PFQC +C + F R +HL  H  R H  +       KPF+C +CG+ F R +  +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
          H R+
Sbjct: 85 HLRQ 88

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +PFQC +C + F R +HL  H  R H  +       KPF+C +CG+ F R +  +RH +I
Sbjct: 33  KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 173 HARE 176
           H R+
Sbjct: 85  HLRQ 88

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +PFQC +C + F R +HL  H  R H  +       KPF+C +CG+ F R +  +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
          H R+
Sbjct: 85 HLRQ 88

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +PFQC +C + F R +HL  H  R H  +       KPF+C +CG+ F R +  +RH +I
Sbjct: 33  KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 173 HARE 176
           H R+
Sbjct: 85  HLRQ 88

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +PFQC +C + F R +HL  H  R H          KPF+C +CG+ F R +  +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
          H R+
Sbjct: 85 HLRQ 88

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +PFQC +C + F R +HL  H  R H          KPF+C +CG+ F R +  +RH +I
Sbjct: 33  KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 173 HARE 176
           H R+
Sbjct: 85  HLRQ 88

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +PFQC +C + F R +HL  H  R H          KPF+C +CG+ F R +  +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
          H R+
Sbjct: 85 HLRQ 88

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +PFQC +C + F R +HL  H  R H          KPF+C +CG+ F R +  +RH +I
Sbjct: 33  KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 173 HARE 176
           H R+
Sbjct: 85  HLRQ 88

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +PFQC +C + F R +HL  H  R H          KPF+C +CG+ F R +  +RH +I
Sbjct: 32 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 83
Query: 65 HARE 68
          H R+
Sbjct: 84 HLRQ 87

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +PFQC +C + F R +HL  H  R H          KPF+C +CG+ F R +  +RH +I
Sbjct: 32  KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 83
Query: 173 HARE 176
           H R+
Sbjct: 84  HLRQ 87

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +PFQC +C + F R +HL  H  R H  +       KPF+C +CG+ F R +  +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 65 HAR 67
          H R
Sbjct: 85 HLR 87

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +PFQC +C + F R +HL  H  R H  +       KPF+C +CG+ F R +  +RH +I
Sbjct: 33  KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 173 HAR 175
           H R
Sbjct: 85  HLR 87

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 7  FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQIH 65
          F C+VC + F R+EHL RH  R+H          KP+ C +C + FTRR+ L RH Q+IH
Sbjct: 3  FVCEVCTRAFARQEHLKRH-YRSH-------TNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Query: 66 AREL 69
          +  L
Sbjct: 55 SGNL 58

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQIH 173
           F C+VC + F R+EHL RH  R+H          KP+ C +C + FTRR+ L RH Q+IH
Sbjct: 3   FVCEVCTRAFARQEHLKRH-YRSH-------TNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Query: 174 AREL 177
           +  L
Sbjct: 55  SGNL 58

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 4  VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ 63
          ++PFQC +C + F R +HL  H  R H          KPF+C +CG+ F R +  +RH+ 
Sbjct: 1  MKPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHRD 52
Query: 64 I 64
          I
Sbjct: 53 I 53

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ 171
           ++PFQC +C + F R +HL  H  R H          KPF+C +CG+ F R +  +RH+ 
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHRD 52
Query: 172 I 172
           I
Sbjct: 53  I 53

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 51/138 (36%)
Query: 38  AEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENV 97
           + +   +C +CGK F    HL RH+  H+ E                             
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLSHSGE----------------------------- 33
Query: 98  RRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG 157
                          +P+ C VC   F RK+ +  H  R+HD     G+  KP+ C  CG
Sbjct: 34  ---------------KPYSCPVCGLRFKRKDRMSYH-VRSHD-----GSVGKPYICQSCG 72
Query: 158 KTFTRREHLRRH-QQIHA 174
           K F+R +HL  H +Q+H+
Sbjct: 73  KGFSRPDHLNGHIKQVHS 90

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 57/141 (40%), Gaps = 26/141 (18%)
Query: 37  GAEAKPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLD 94
            +E +PF C+   C K + +  HL+ H + H  E               E  F    +L 
Sbjct: 1   ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE-----KPYQCDFKDCERRFSRSDQLK 55
Query: 95  ENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
            + RR            V+PFQC  C + F R +HL  H  R H  +       KPFSC 
Sbjct: 56  RHQRRHTG---------VKPFQCKTCQRKFSRSDHLKTH-TRTHTGE-------KPFSCR 98
Query: 155 V--CGKTFTRREHLRRHQQIH 173
              C K F R + L RH  +H
Sbjct: 99  WPSCQKKFARSDELVRHHNMH 119

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
           +P+QCD   C + F R + L RH++R            KPF C  C + F+R +HL+ H 
Sbjct: 35  KPYQCDFKDCERRFSRSDQLKRHQRRH--------TGVKPFQCKTCQRKFSRSDHLKTHT 86
Query: 171 QIHARE 176
           + H  E
Sbjct: 87  RTHTGE 92

>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Transcriptional Repressor Ctcf Length = 86

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 61
          +P+ C  C++ F +K+ L  H KR HD +    A    F CS CGKTFTRR  + RH
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA----FVCSKCGKTFTRRNTMARH 66

>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Transcriptional Repressor Ctcf Length = 86

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
           +P+ C  C++ F +K+ L  H KR HD +    A    F CS CGKTFTRR  + RH
Sbjct: 14  KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA----FVCSKCGKTFTRRNTMARH 66

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +PF+C  C + + RKE+L+ H  R + ++  E    + F+CSVC +TF RR  LR H   
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEAR-NCMNRSE----QVFTCSVCQETFRRRMELRLHMVS 88
Query: 65 HAREL 69
          H  E+
Sbjct: 89 HTGEM 93

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +PF+C  C + + RKE+L+ H  R + ++  E    + F+CSVC +TF RR  LR H   
Sbjct: 34  KPFECPKCGKCYFRKENLLEHEAR-NCMNRSE----QVFTCSVCQETFRRRMELRLHMVS 88
Query: 173 HAREL 177
           H  E+
Sbjct: 89  HTGEM 93

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           RP+ CD+C++ F R++HL  HR           ++ KPF C  CGK F +   L  H+ +
Sbjct: 44  RPYTCDICHKAFRRQDHLRDHRY--------IHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Query: 65  HARELLQSSMDMSA 78
           H    +Q+S   +A
Sbjct: 96  H----MQTSSPTAA 105

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           RP+ CD+C++ F R++HL  HR           ++ KPF C  CGK F +   L  H+ +
Sbjct: 44  RPYTCDICHKAFRRQDHLRDHRY--------IHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Query: 173 HARELLQSSMDMSA 186
           H    +Q+S   +A
Sbjct: 96  H----MQTSSPTAA 105

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +P++CD C   F  K +L  H K  H          KP+ C++CG  F R  +L+ H +I
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVH-------TGEKPYRCNICGAQFNRPANLKTHTRI 67
Query: 65 HARE 68
          H+ E
Sbjct: 68 HSGE 71

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +P++CD C   F  K +L  H K  H          KP+ C++CG  F R  +L+ H +I
Sbjct: 16  KPYKCDRCQASFRYKGNLASH-KTVH-------TGEKPYRCNICGAQFNRPANLKTHTRI 67
Query: 173 HARE 176
           H+ E
Sbjct: 68  HSGE 71

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 4  VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 61
          +RP+ C VC + F  K HLV H K    +        KP+ C++C K F  R+   RH
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMKIHTGI--------KPYECNICAKRFMWRDSFHRH 84

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
           +RP+ C VC + F  K HLV H K    +        KP+ C++C K F  R+   RH
Sbjct: 35  LRPYGCGVCGKKFKMKHHLVGHMKIHTGI--------KPYECNICAKRFMWRDSFHRH 84

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          R ++CD C + F     L +HR R H  +       KP+ C  CGK F +R HL  H ++
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHR-RTHTGE-------KPYKCDECGKAFIQRSHLIGHHRV 68
Query: 65 HA 66
          H 
Sbjct: 69 HT 70

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           R ++CD C + F     L +HR R H  +       KP+ C  CGK F +R HL  H ++
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHR-RTHTGE-------KPYKCDECGKAFIQRSHLIGHHRV 68
Query: 173 HA 174
           H 
Sbjct: 69  HT 70

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 5  RPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
          +P++C  + C+  F R + L RH ++           AKPF C VC ++F+R +HL  H 
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKH--------TGAKPFQCGVCNRSFSRSDHLALHM 95
Query: 63 QIH 65
          + H
Sbjct: 96 KRH 98

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 113 RPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
           +P++C  + C+  F R + L RH ++           AKPF C VC ++F+R +HL  H 
Sbjct: 44  KPYKCTWEGCDWRFARSDELTRHYRKH--------TGAKPFQCGVCNRSFSRSDHLALHM 95
Query: 171 QIH 173
           + H
Sbjct: 96  KRH 98

>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 641- 673) Of Human Zinc Finger Protein 473 Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
          G +  PF C+ CGKTF+   HL +HQ IHA E
Sbjct: 7  GTKEHPFKCNECGKTFSHSAHLSKHQLIHAGE 38

>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 641- 673) Of Human Zinc Finger Protein 473 Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
           G +  PF C+ CGKTF+   HL +HQ IHA E
Sbjct: 7   GTKEHPFKCNECGKTFSHSAHLSKHQLIHAGE 38

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +P+ C  C + F R   LV+H +R H          KP+ C  CGK F++   L  HQ+I
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVH-------TGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 65 H 65
          H
Sbjct: 65 H 65

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +P+ C  C + F R   LV+H +R H          KP+ C  CGK F++   L  HQ+I
Sbjct: 13  KPYGCVECGKAFSRSSILVQH-QRVH-------TGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 173 H 173
           H
Sbjct: 65  H 65

>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 603- 635) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ CS+CGK+FT++  L  HQQIH  E
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGE 38

>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 603- 635) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ CS+CGK+FT++  L  HQQIH  E
Sbjct: 11  KPYECSICGKSFTKKSQLHVHQQIHTGE 38

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-25
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-25
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	8e-25
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-21
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-13
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-23
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-11
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-22
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	9e-17
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	5e-14
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	5e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-21
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	9e-21
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	6e-14
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-20
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-20
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-13
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-11
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	8e-20
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-15
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-14
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-19
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-19
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-18
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-18
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	7e-16
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-08
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-19
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-11
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-18
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-13
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	8e-13
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-09
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-18
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-12
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-12
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-17
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-17
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-17
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	7e-16
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-17
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-17
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-12
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-16
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-16
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-14
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	9e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-16
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-16
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-16
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-16
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-15
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-15
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-12
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	8e-12
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-14
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-14
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-12
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-12
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-07
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-12
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-12
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-12
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-06
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-12
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-12
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-09
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	7e-08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	9e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-12
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-10
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-08
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	7e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-09
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	9e-11
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	9e-11
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	5e-09
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	7e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	4e-10
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	4e-10
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	4e-07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	4e-07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-06
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	4e-10
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	4e-10
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	2e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	8e-10
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	8e-10
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-09
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-09
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-04
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	2e-09
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	2e-09
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	6e-05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-09
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-09
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-04
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-09
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-09
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-08
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-08
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-08
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-08
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-08
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-08
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-08
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-08
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	1e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-08
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-08
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-08
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-08
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-08
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-08
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-08
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-08
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-08
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-08
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-08
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	6e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-08
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	7e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-08
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-08
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-08
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-08
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-08
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-08
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-08
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-08
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	5e-08
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	5e-08
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	2e-04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-08
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-08
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-08
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-08
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	5e-08
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	5e-08
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-08
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-08
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-08
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-08
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	6e-08
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	6e-08
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-08
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-08
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-08
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-08
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	7e-08
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	3e-06
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-08
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-08
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-08
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-08
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-08
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-08
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-08
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-08
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-08
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-08
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-04
1ard_A	29	Yeast transcription factor ADR1; transcription reg	8e-08
1ard_A	29	Yeast transcription factor ADR1; transcription reg	8e-08
1ard_A	29	Yeast transcription factor ADR1; transcription reg	2e-05
1ard_A	29	Yeast transcription factor ADR1; transcription reg	2e-05
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	8e-08
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	8e-08
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-08
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-08
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-04
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	8e-08
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	8e-08
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-08
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-08
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-07
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-07
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	1e-07
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	1e-07
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-07
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-07
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-07
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-07
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-07
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-07
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	2e-07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	2e-07
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-07
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-07
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-07
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-07
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	5e-05
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-07
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-07
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-07
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-07
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-07
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-07
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-07
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-07
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-07
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-07
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-07
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-07
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-07
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-07
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-07
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-07
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-07
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-07
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-07
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-07
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-07
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-07
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-07
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-07
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-07
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-07
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-07
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-07
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-07
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-07
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	9e-07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	9e-07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	4e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	4e-04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	9e-07
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	9e-07
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	1e-06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	1e-06
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-06
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-06
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-06
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-06
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-06
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	2e-06
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	2e-06
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-06
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-06
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-05
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	1e-05
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	1e-05
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	1e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	1e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	2e-05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	2e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-05
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	5e-05
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	5e-05
1paa_A	30	Yeast transcription factor ADR1; transcription reg	1e-04
1paa_A	30	Yeast transcription factor ADR1; transcription reg	1e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	2e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	2e-04
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	2e-04
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	2e-04
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	5e-04
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	5e-04
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-04
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  100 bits (252), Expect = 1e-25
 Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 60/169 (35%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P++C  C + F  K+ L RH +R H        E KP+ C  CGK+F++R +LR HQ+ 
Sbjct: 48  KPYKCPECGKSFSDKKDLTRH-QRTHT------GE-KPYKCPECGKSFSQRANLRAHQRT 99

Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
           H  E                                            +P+ C  C + F
Sbjct: 100 HTGE--------------------------------------------KPYACPECGKSF 115

Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
            +  HL  H +R H          KP+ C  CGK+F+R ++L  HQ+ H
Sbjct: 116 SQLAHLRAH-QRTH-------TGEKPYKCPECGKSFSREDNLHTHQRTH 156

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  100 bits (251), Expect = 2e-25
 Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 60/171 (35%)

Query: 6   PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 65
           P+ C  C + F R +HL  H +R H        E KP+ C  CGK+F+ ++ L RHQ+ H
Sbjct: 21  PYACPECGKSFSRSDHLAEH-QRTHT------GE-KPYKCPECGKSFSDKKDLTRHQRTH 72

Query: 66  ARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFV 125
                         TG                         E     +P++C  C + F 
Sbjct: 73  --------------TG-------------------------E-----KPYKCPECGKSFS 88

Query: 126 RKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
           ++ +L  H +R H        E KP++C  CGK+F++  HLR HQ+ H  E
Sbjct: 89  QRANLRAH-QRTHT------GE-KPYACPECGKSFSQLAHLRAHQRTHTGE 131

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 98.7 bits (247), Expect = 8e-25
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 60/169 (35%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           +P++C  C + F ++ +L  H +R H        E KP++C  CGK+F++  HLR HQ+ 
Sbjct: 76  KPYKCPECGKSFSQRANLRAH-QRTHT------GE-KPYACPECGKSFSQLAHLRAHQRT 127

Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
           H  E                                            +P++C  C + F
Sbjct: 128 HTGE--------------------------------------------KPYKCPECGKSF 143

Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
            R+++L  H +R H        E KP+ C  CGK+F+RR+ L  HQ+ H
Sbjct: 144 SREDNLHTH-QRTHT------GE-KPYKCPECGKSFSRRDALNVHQRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 89.8 bits (224), Expect = 1e-21
 Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 60/161 (37%)

Query: 16  FVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMD 75
                  V             G E KP++C  CGK+F+R +HL  HQ+ H          
Sbjct: 3   EFGSSSSVAQ-AALE-----PG-E-KPYACPECGKSFSRSDHLAEHQRTH---------- 44

Query: 76  MSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRK 135
               TG  E                            +P++C  C + F  K+ L RH +
Sbjct: 45  ----TG--E----------------------------KPYKCPECGKSFSDKKDLTRH-Q 69

Query: 136 RAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
           R H        E KP+ C  CGK+F++R +LR HQ+ H  E
Sbjct: 70  RTHT------GE-KPYKCPECGKSFSQRANLRAHQRTHTGE 103

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 66.3 bits (163), Expect = 4e-13
 Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 52/123 (42%)

Query: 51  TFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGID 110
           +            +                G                         E   
Sbjct: 2   SEFGSSSSVAQAALE--------------PG-------------------------E--- 19

Query: 111 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
             +P+ C  C + F R +HL  H +R H        E KP+ C  CGK+F+ ++ L RHQ
Sbjct: 20  --KPYACPECGKSFSRSDHLAEH-QRTHT------GE-KPYKCPECGKSFSDKKDLTRHQ 69

Query: 171 QIH 173
           + H
Sbjct: 70  RTH 72

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 93.0 bits (232), Expect = 2e-23
 Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 64/173 (36%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ-- 62
              +C  C++ F+ K +L  H  R H        E KPF C  CGK + R+E+L  H+  
Sbjct: 6   SGVECPTCHKKFLSKYYLKVH-NRKHT------GE-KPFECPKCGKCYFRKENLLEHEAR 57

Query: 63  -QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCN 121
             ++  E                                            + F C VC 
Sbjct: 58  NCMNRSE--------------------------------------------QVFTCSVCQ 73

Query: 122 QGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ-IH 173
           + F R+  L  H   +H        E  P+ CS C + F +++ L+ H   +H
Sbjct: 74  ETFRRRMELRLH-MVSHT------GE-MPYKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 59.1 bits (144), Expect = 3e-11
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ-- 170
              +C  C++ F+ K +L  H  R H        E KPF C  CGK + R+E+L  H+  
Sbjct: 6   SGVECPTCHKKFLSKYYLKVH-NRKHT------GE-KPFECPKCGKCYFRKENLLEHEAR 57

Query: 171 -QIHARE 176
             ++  E
Sbjct: 58  NCMNRSE 64

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 89.5 bits (223), Expect = 1e-22
 Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 51/137 (37%)

Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
              +C +CGK F    HL RH+  H              +G                   
Sbjct: 6   SGVACEICGKIFRDVYHLNRHKLSH--------------SG------------------- 32

Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
                 E     +P+ C VC   F RK+ +  H  R+HD     G+  KP+ C  CGK F
Sbjct: 33  ------E-----KPYSCPVCGLRFKRKDRMSYH-VRSHD-----GSVGKPYICQSCGKGF 75

Query: 161 TRREHLRRH-QQIHARE 176
           +R +HL  H +Q+H+  
Sbjct: 76  SRPDHLNGHIKQVHSGP 92

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 73.7 bits (182), Expect = 9e-17
 Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 50/133 (37%)

Query: 6   PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 65
              C++C + F    HL RH K +H        E KP+SC VCG  F R++ +  H + H
Sbjct: 7   GVACEICGKIFRDVYHLNRH-KLSHS------GE-KPYSCPVCGLRFKRKDRMSYHVRSH 58

Query: 66  ARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFV 125
                          G                             V +P+ C  C +GF 
Sbjct: 59  --------------DG----------------------------SVGKPYICQSCGKGFS 76

Query: 126 RKEHLVRHRKRAH 138
           R +HL  H K+ H
Sbjct: 77  RPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 66.0 bits (162), Expect = 5e-14
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQ 63
          +P+ C VC   F RK+ +  H  R+HD     G+  KP+ C  CGK F+R +HL  H +Q
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYH-VRSHD-----GSVGKPYICQSCGKGFSRPDHLNGHIKQ 87

Query: 64 IHARE 68
          +H+  
Sbjct: 88 VHSGP 92

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C  C K FSR  HL  H+K++H
Sbjct: 67  ICQSCGKGFSRPDHLNGHIKQVH 89

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 88.0 bits (219), Expect = 1e-21
 Identities = 53/175 (30%), Positives = 67/175 (38%), Gaps = 66/175 (37%)

Query: 5   RPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRR 60
           RPF C    CN+ + +  HL  H  R H      G E KP+ C    C + F+R + L+R
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMH-SRKH-----TG-E-KPYQCDFKDCERRFSRSDQLKR 56

Query: 61  HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVC 120
           HQ+ H              TG                              V+PFQC  C
Sbjct: 57  HQRRH--------------TG------------------------------VKPFQCKTC 72

Query: 121 NQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH 173
            + F R +HL  H  R H        E KPFSC    C K F R + L RH  +H
Sbjct: 73  QRKFSRSDHLKTH-TRTHT------GE-KPFSCRWPSCQKKFARSDELVRHHNMH 119

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 84.8 bits (211), Expect = 9e-21
 Identities = 35/156 (22%), Positives = 52/156 (33%), Gaps = 60/156 (38%)

Query: 21  HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT 80
                 +             K F C  CG+ FT+  +L  H++ H              T
Sbjct: 4   GSSGG-RLPS-------KTKKEFICKFCGRHFTKSYNLLIHERTH--------------T 41

Query: 81  GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDL 140
                                     E     RP+ CD+C++ F R++HL  H +  H  
Sbjct: 42  D-------------------------E-----RPYTCDICHKAFRRQDHLRDH-RYIHS- 69

Query: 141 DPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
                 E KPF C  CGK F +   L  H+ +H + 
Sbjct: 70  -----KE-KPFKCQECGKGFCQSRTLAVHKTLHMQT 99

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 66.3 bits (163), Expect = 6e-14
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 60/150 (40%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           + F C  C + F +  +L+ H +R H        E +P++C +C K F R++HLR H+ I
Sbjct: 16  KEFICKFCGRHFTKSYNLLIH-ERTHT------DE-RPYTCDICHKAFRRQDHLRDHRYI 67

Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
           H++E                                            +PF+C  C +GF
Sbjct: 68  HSKE--------------------------------------------KPFKCQECGKGF 83

Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
            +   L  H K  H        +    + +
Sbjct: 84  CQSRTLAVH-KTLH-------MQTSSPTAA 105

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 83.7 bits (208), Expect = 4e-20
 Identities = 39/178 (21%), Positives = 55/178 (30%), Gaps = 67/178 (37%)

Query: 5   RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
           R   C    C + F     + +H    H          +   C+ CGK F     L+RHQ
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKH-LHTH-------GP-RVHVCAECGKAFVESSKLKRHQ 54

Query: 63  QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV--C 120
            +H              TG  E                            +PFQC    C
Sbjct: 55  LVH--------------TG--E----------------------------KPFQCTFEGC 70

Query: 121 NQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARE 176
            + F    +L  H  R H  D       +P+ C    C K F +  +L+ H   HA+ 
Sbjct: 71  GKRFSLDFNLRTH-VRIHTGD-------RPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 82.9 bits (206), Expect = 4e-20
 Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 52/136 (38%)

Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
            P  C VCGK F+R++ L+ H + H              TG                   
Sbjct: 7   GPHKCEVCGKCFSRKDKLKTHMRCH--------------TG------------------- 33

Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
                      V+P++C  C+        L +H  R H       ++ +PF C +C    
Sbjct: 34  -----------VKPYKCKTCDYAAADSSSLNKH-LRIH-------SDERPFKCQICPYAS 74

Query: 161 TRREHLRRHQQIHARE 176
                L  H + H  +
Sbjct: 75  RNSSQLTVHLRSHTGD 90

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 64.4 bits (158), Expect = 2e-13
 Identities = 29/134 (21%), Positives = 40/134 (29%), Gaps = 53/134 (39%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
            P +C+VC + F RK+ L  H  R H          KP+ C  C         L +H +I
Sbjct: 7   GPHKCEVCGKCFSRKDKLKTH-MRCHT------GV-KPYKCKTCDYAAADSSSLNKHLRI 58

Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
           H              +   E                            RPF+C +C    
Sbjct: 59  H--------------SD--E----------------------------RPFKCQICPYAS 74

Query: 125 VRKEHLVRHRKRAH 138
                L  H  R+H
Sbjct: 75  RNSSQLTVH-LRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 59.4 bits (145), Expect = 1e-11
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +P++C  C+        L +H  R H       ++ +PF C +C         L  H + 
Sbjct: 35 KPYKCKTCDYAAADSSSLNKH-LRIH-------SDERPFKCQICPYASRNSSQLTVHLRS 86

Query: 65 HARE 68
          H  +
Sbjct: 87 HTGD 90

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 81.8 bits (203), Expect = 8e-20
 Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 54/135 (40%)

Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
           KPF C +C + F+R +HL  H + H              TG                   
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTH--------------TG------------------- 28

Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
                 E     +PF CD+C + F R +   RHR               P       +  
Sbjct: 29  ------E-----KPFACDICGRKFARSDERKRHR-DIQ-------HI-LPILEDKVEELL 68

Query: 161 TRREHLRRHQQIHAR 175
           ++  HL        +
Sbjct: 69  SKNYHLENEVA-RLK 82

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 55/137 (40%)

Query: 4   VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ 63
           ++PFQC +C + F R +HL  H  R H      G E KPF+C +CG+ F R +  +RH+ 
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTH-IRTH-----TG-E-KPFACDICGRKFARSDERKRHRD 52

Query: 64  IHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQG 123
           I                                                 P   D   + 
Sbjct: 53  IQ--------------HI-------------------------------LPILEDKVEEL 67

Query: 124 FVRKEHLVRHRK--RAH 138
             +  HL       +  
Sbjct: 68  LSKNYHLENEVARLKKL 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 67.1 bits (165), Expect = 2e-14
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 8/62 (12%)

Query: 112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ 171
           ++PFQC +C + F R +HL  H  R H      G E KPF+C +CG+ F R +  +RH+ 
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTH-IRTH-----TG-E-KPFACDICGRKFARSDERKRHRD 52

Query: 172 IH 173
           I 
Sbjct: 53  IQ 54

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 81.4 bits (202), Expect = 1e-19
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 54/138 (39%)

Query: 41  KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
           +P++C V  C + F++   L RH +IH              TG                 
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIH--------------TG----------------- 31

Query: 99  RWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGK 158
                   +     +PFQC +C + F R +HL  H  R H        E KPF+C +CG+
Sbjct: 32  --------Q-----KPFQCRICMRNFSRSDHLTTH-IRTHT------GE-KPFACDICGR 70

Query: 159 TFTRREHLRRHQQIHARE 176
            F R +  +RH +IH R+
Sbjct: 71  KFARSDERKRHTKIHLRQ 88

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 64.0 bits (157), Expect = 2e-13
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 8/64 (12%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +PFQC +C + F R +HL  H  R H        E KPF+C +CG+ F R +  +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHT------GE-KPFACDICGRKFARSDERKRHTKI 84

Query: 65 HARE 68
          H R+
Sbjct: 85 HLRQ 88

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 40/177 (22%), Positives = 53/177 (29%), Gaps = 66/177 (37%)

Query: 5   RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRR 60
           + + C    C   + +   L  H    H      G   KPF C    C K FT   HL R
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAH-LCKH-----TGE--KPFPCKEEGCEKGFTSLHHLTR 62

Query: 61  HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCD-- 118
           H   H              TG  E                            + F CD  
Sbjct: 63  HSLTH--------------TG--E----------------------------KNFTCDSD 78

Query: 119 VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH 173
            C+  F  K ++ +H  R H        +   + C    CGK F +   L+ HQ  H
Sbjct: 79  GCDLRFTTKANMKKHFNRFH------NIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 80.7 bits (200), Expect = 3e-18
 Identities = 34/177 (19%), Positives = 56/177 (31%), Gaps = 66/177 (37%)

Query: 5   RPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRR 60
           +PF C    C +GF    HL RH    H        E K F+C    C   FT + ++++
Sbjct: 41  KPFPCKEEGCEKGFTSLHHLTRH-SLTHT------GE-KNFTCDSDGCDLRFTTKANMKK 92

Query: 61  HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV- 119
           H                       +                          +  + C   
Sbjct: 93  HFNRF--------------HN--IK--------------------------ICVYVCHFE 110

Query: 120 -CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRRHQQIH 173
            C + F +   L  H + +H        +  P+ C    C K F+    L+RH+++H
Sbjct: 111 NCGKAFKKHNQLKVH-QFSH-------TQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 79.9 bits (198), Expect = 5e-18
 Identities = 38/174 (21%), Positives = 59/174 (33%), Gaps = 63/174 (36%)

Query: 6   PFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRH 61
            F CD   C+  F  K ++ +H  R H        +   + C    CGK F +   L+ H
Sbjct: 72  NFTCDSDGCDLRFTTKANMKKHFNRFH------NIKICVYVCHFENCGKAFKKHNQLKVH 125

Query: 62  QQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQC--DV 119
           Q  H              T                          +      P++C  + 
Sbjct: 126 QFSH--------------TQ-------------------------Q-----LPYECPHEG 141

Query: 120 CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
           C++ F     L RH ++ H   P +    K  SCS  GKT+T   +L+   + H
Sbjct: 142 CDKRFSLPSRLKRH-EKVHAGYPCK----KDDSCSFVGKTWT--LYLKHVAECH 188

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 73.8 bits (182), Expect = 7e-16
 Identities = 30/142 (21%), Positives = 42/142 (29%), Gaps = 58/142 (40%)

Query: 41  KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
           K + CS   CG  + +   L+ H   H              TG                 
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAHLCKH--------------TG----------------- 39

Query: 99  RWVACQRIEGIDVVRPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS-- 154
                   E     +PF C    C +GF    HL RH    H        E K F+C   
Sbjct: 40  --------E-----KPFPCKEEGCEKGFTSLHHLTRH-SLTHT------GE-KNFTCDSD 78

Query: 155 VCGKTFTRREHLRRHQQIHARE 176
            C   FT + ++++H       
Sbjct: 79  GCDLRFTTKANMKKHFNRFHNI 100

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 20/138 (14%), Positives = 36/138 (26%), Gaps = 56/138 (40%)

Query: 5   RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRR 60
             + C    C + F +   L  H + +H        +  P+ C    C K F+    L+R
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVH-QFSH-------TQQLPYECPHEGCDKRFSLPSRLKR 154

Query: 61  HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVC 120
           H+++H               G                                  + D C
Sbjct: 155 HEKVH--------------AG------------------------------YPCKKDDSC 170

Query: 121 NQGFVRKEHLVRHRKRAH 138
           +         ++H    H
Sbjct: 171 SFVGKTWTLYLKHVAECH 188

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 83.1 bits (206), Expect = 2e-19
 Identities = 37/175 (21%), Positives = 51/175 (29%), Gaps = 59/175 (33%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA--KPFSCSVCGKTFTRREHLRRHQ 62
                  C++ F     LV H      +  PE          C   GK+F  +  L  H 
Sbjct: 24  LSRPKKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82

Query: 63  QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV--C 120
           ++H              TG                               +PF C    C
Sbjct: 83  RVH--------------TG------------------------------EKPFPCPFPGC 98

Query: 121 NQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH 173
            + F R E+L  H KR H        E KPF C    C + F      ++H  +H
Sbjct: 99  GKIFARSENLKIH-KRTHT------GE-KPFKCEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA--KPFSCSVCGK 158
           ++C+ I+            C++ F     LV H      +  PE          C   GK
Sbjct: 14  LSCKWIDEAQ--LSRPKKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGK 70

Query: 159 TFTRREHLRRHQQIH 173
           +F  +  L  H ++H
Sbjct: 71  SFKAKYKLVNHIRVH 85

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 78.3 bits (194), Expect = 2e-18
 Identities = 32/135 (23%), Positives = 45/135 (33%), Gaps = 54/135 (40%)

Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
                + CGKT+T+  HL+ H + H  E                                
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAHLRTHTGE-------------------------------- 33

Query: 101 VACQRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGK 158
                       +P+ CD   C   F R + L RH  R H      G   +PF C  C +
Sbjct: 34  ------------KPYHCDWDGCGWKFARSDELTRH-YRKHT-----GH--RPFQCQKCDR 73

Query: 159 TFTRREHLRRHQQIH 173
            F+R +HL  H + H
Sbjct: 74  AFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 32/134 (23%), Positives = 42/134 (31%), Gaps = 54/134 (40%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQ 62
                  C + + +  HL  H  R H  +       KP+ C    CG  F R + L RH 
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAH-LRTHTGE-------KPYHCDWDGCGWKFARSDELTRHY 57

Query: 63  QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQ 122
           + H              TG                               RPFQC  C++
Sbjct: 58  RKH--------------TG------------------------------HRPFQCQKCDR 73

Query: 123 GFVRKEHLVRHRKR 136
            F R +HL  H KR
Sbjct: 74  AFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 62.5 bits (153), Expect = 8e-13
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 10/63 (15%)

Query: 5  RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
          +P+ CD   C   F R + L RH  R H      G   +PF C  C + F+R +HL  H 
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRH-YRKHT-----GH--RPFQCQKCDRAFSRSDHLALHM 85

Query: 63 QIH 65
          + H
Sbjct: 86 KRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQ 170
                  C + + +  HL  H  R H  +       KP+ C    CG  F R + L RH 
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAH-LRTHTGE-------KPYHCDWDGCGWKFARSDELTRHY 57

Query: 171 QIHARE 176
           + H   
Sbjct: 58  RKHTGH 63

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 76.7 bits (190), Expect = 5e-18
 Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 52/131 (39%)

Query: 43  FSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVA 102
           F C +CGK+F R   L  H  IH              +                      
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIH--------------SD--------------------- 26

Query: 103 CQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTR 162
                     RP+ C  C + F +K  + +H    H        E KP  C VCGK F++
Sbjct: 27  ----T-----RPYPCQYCGKRFHQKSDMKKH-TFIHT------GE-KPHKCQVCGKAFSQ 69

Query: 163 REHLRRHQQIH 173
             +L  H + H
Sbjct: 70  SSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 60.5 bits (148), Expect = 4e-12
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          RP+ C  C + F +K  + +H    H        E KP  C VCGK F++  +L  H + 
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKH-TFIHT------GE-KPHKCQVCGKAFSQSSNLITHSRK 79

Query: 65 H 65
          H
Sbjct: 80 H 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 60.1 bits (147), Expect = 4e-12
 Identities = 29/132 (21%), Positives = 44/132 (33%), Gaps = 53/132 (40%)

Query: 7   FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 66
           F C +C + F R   L  H    H          +P+ C  CGK F ++  +++H  IH 
Sbjct: 2   FDCKICGKSFKRSSTLSTH-LLIHS------DT-RPYPCQYCGKRFHQKSDMKKHTFIH- 52

Query: 67  RELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVR 126
                        TG  E                            +P +C VC + F +
Sbjct: 53  -------------TG--E----------------------------KPHKCQVCGKAFSQ 69

Query: 127 KEHLVRHRKRAH 138
             +L+ H  R H
Sbjct: 70  SSNLITH-SRKH 80

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 75.6 bits (187), Expect = 3e-17
 Identities = 32/136 (23%), Positives = 46/136 (33%), Gaps = 55/136 (40%)

Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
           K + C  CGK+FT +    RH  +H               GL                  
Sbjct: 9   KLYPCQ-CGKSFTHKSQRDRHMSMH--------------LGL------------------ 35

Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
                       RP+ C VC + F  K HLV H  + H          KP+ C++C K F
Sbjct: 36  ------------RPYGCGVCGKKFKMKHHLVGH-MKIHT------GI-KPYECNICAKRF 75

Query: 161 TRREHLRRHQQIHARE 176
             R+    H+ + +  
Sbjct: 76  MWRDSF--HRHVTSCT 89

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 75.2 bits (186), Expect = 4e-17
 Identities = 27/163 (16%), Positives = 46/163 (28%), Gaps = 63/163 (38%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           + + C  C + F  K    RH    H          +P+ C VCGK F  + HL  H +I
Sbjct: 9   KLYPCQ-CGKSFTHKSQRDRH-MSMHL------GL-RPYGCGVCGKKFKMKHHLVGHMKI 59

Query: 65  HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
           H                                               +P++C++C + F
Sbjct: 60  HTGI--------------------------------------------KPYECNICAKRF 75

Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLR 167
           + ++    HR              K +  +   +  T      
Sbjct: 76  MWRDSF--HR-HVTS------CT-KSYEAAKAEQNTTEASGPS 108

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 76.9 bits (190), Expect = 3e-17
 Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 70/180 (38%)

Query: 5   RPFQCDVCN-----QGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREH 57
           + F C         + F  +  LV H  R H        E KP  C+   C K+++R E+
Sbjct: 33  KEFVCHWGGCSRELRPFKAQYMLVVH-MRRHT------GE-KPHKCTFEGCRKSYSRLEN 84

Query: 58  LRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQC 117
           L+ H + H              TG                         E     +P+ C
Sbjct: 85  LKTHLRSH--------------TG-------------------------E-----KPYMC 100

Query: 118 --DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH 173
             + C++ F       +H+ R H  +       KP+ C +  C K +T    LR+H +  
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSNE-------KPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 73.0 bits (180), Expect = 7e-16
 Identities = 40/179 (22%), Positives = 55/179 (30%), Gaps = 67/179 (37%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG-----KTFTRREHLR 59
              + D C+Q F  +E LV H    H        E K F C   G     + F  +  L 
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEH-----IHGERKEFVCHWGGCSRELRPFKAQYMLV 56

Query: 60  RHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV 119
            H + H              TG  E                            +P +C  
Sbjct: 57  VHMRRH--------------TG--E----------------------------KPHKCTF 72

Query: 120 --CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC--SVCGKTFTRREHLRRHQQ-IH 173
             C + + R E+L  H  R+H        E KP+ C    C K F+      +HQ   H
Sbjct: 73  EGCRKSYSRLENLKTH-LRSHT------GE-KPYMCEHEGCSKAFSNASDRAKHQNRTH 123

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 73.7 bits (182), Expect = 5e-17
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
            ++C VC++ +    +  RH   +H          K + C  C K FTR++++  H +I
Sbjct: 9  HTYRCKVCSRVYTHISNFCRHYVTSH------KRNVKVYPCPFCFKEFTRKDNMTAHVKI 62

Query: 65 HAR 67
            +
Sbjct: 63 IHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 73.7 bits (182), Expect = 5e-17
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
             ++C VC++ +    +  RH   +H          K + C  C K FTR++++  H +I
Sbjct: 9   HTYRCKVCSRVYTHISNFCRHYVTSH------KRNVKVYPCPFCFKEFTRKDNMTAHVKI 62

Query: 173 HAR 175
             +
Sbjct: 63  IHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 59.9 bits (146), Expect = 4e-12
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 42/100 (42%)

Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
             + C VC + +T   +  RH     +                                 
Sbjct: 9   HTYRCKVCSRVYTHISNFCRHYVTSHK------------RN------------------- 37

Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDL 140
                      V+ + C  C + F RK+++  H K  H +
Sbjct: 38  -----------VKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNI 313
            C  C K F+R+ ++  H+K +H I
Sbjct: 42  PCPFCFKEFTRKDNMTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 4  VRPFQCDVCNQGFVRKEHLVRHRKRAHDL 32
          V+ + C  C + F RK+++  H K  H +
Sbjct: 38 VKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 72.5 bits (179), Expect = 1e-16
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ- 63
          R F C+VC + F R+EHL RH  R+H        E KP+ C +C + FTRR+ L RH Q 
Sbjct: 1  RSFVCEVCTRAFARQEHLKRH-YRSHT------NE-KPYPCGLCNRAFTRRDLLIRHAQK 52

Query: 64 IHARELLQ 71
          IH+  L +
Sbjct: 53 IHSGNLGE 60

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 72.5 bits (179), Expect = 1e-16
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ- 171
           R F C+VC + F R+EHL RH  R+H        E KP+ C +C + FTRR+ L RH Q 
Sbjct: 1   RSFVCEVCTRAFARQEHLKRH-YRSHT------NE-KPYPCGLCNRAFTRRDLLIRHAQK 52

Query: 172 IHARELLQ 179
           IH+  L +
Sbjct: 53  IHSGNLGE 60

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 66.4 bits (163), Expect = 2e-14
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 44/98 (44%)

Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
           + F C VC + F R+EHL+RH + H  E                                
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNE-------------------------------- 28

Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAH 138
                       +P+ C +CN+ F R++ L+RH ++ H
Sbjct: 29  ------------KPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C +C + F+RR  L+RH +++H
Sbjct: 32  PCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C+VC + F+R+ HL RH  R H
Sbjct: 4   VCEVCTRAFARQEHLKRH-YRSH 25

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
             QC++C     +K  L  H+ R H            F C  CGK F + + +  H+  
Sbjct: 6  SGLQCEICGFTCRQKASLNWHQ-RKHAETVAA----LRFPCEFCGKRFEKPDSVAAHRSK 60

Query: 65 HARELLQSSMDMSA 78
              LL +  + S 
Sbjct: 61 SHPALLLAPQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
              QC++C     +K  L  H+ R H            F C  CGK F + + +  H+  
Sbjct: 6   SGLQCEICGFTCRQKASLNWHQ-RKHAETVAA----LRFPCEFCGKRFEKPDSVAAHRSK 60

Query: 173 HARELLQSSMDMSA 186
               LL +  + S 
Sbjct: 61  SHPALLLAPQESSG 74

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 71.8 bits (177), Expect = 3e-16
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +P+ C  C++ F +K+ L  H KR HD           F CS CGKTFTRR  + RH   
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHD----PNFVPAAFVCSKCGKTFTRRNTMARHADN 69

Query: 65 HARE 68
           A  
Sbjct: 70 CAGP 73

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 71.8 bits (177), Expect = 3e-16
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +P+ C  C++ F +K+ L  H KR HD           F CS CGKTFTRR  + RH   
Sbjct: 14  KPYACSHCDKTFRQKQLLDMHFKRYHD----PNFVPAAFVCSKCGKTFTRRNTMARHADN 69

Query: 173 HARE 176
            A  
Sbjct: 70  CAGP 73

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 68.7 bits (169), Expect = 5e-15
 Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 48/120 (40%)

Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
           KP++CS C KTF +++ L  H + +                                   
Sbjct: 14  KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP---------------------------- 45

Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
                         F C  C + F R+  + RH            A          G + 
Sbjct: 46  ------------AAFVCSKCGKTFTRRNTMARH-ADNC-------AGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 8/48 (16%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 52
            F C  C + F R+  + RH            A          G + 
Sbjct: 46 AAFVCSKCGKTFTRRNTMARH-ADNC-------AGPDGVEGENSGPSS 85

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 56/137 (40%)

Query: 41  KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
           +   C    C K +T+  HL+ H + H  E                              
Sbjct: 14  RIHYCDYPGCTKVYTKSSHLKAHLRTHTGE------------------------------ 43

Query: 99  RWVACQRIEGIDVVRPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC 156
                         +P++C  + C+  F R + L RH  R H      GA  KPF C VC
Sbjct: 44  --------------KPYKCTWEGCDWRFARSDELTRHY-RKH-----TGA--KPFQCGVC 81

Query: 157 GKTFTRREHLRRHQQIH 173
            ++F+R +HL  H + H
Sbjct: 82  NRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 35/136 (25%), Positives = 46/136 (33%), Gaps = 56/136 (41%)

Query: 5   RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRR 60
           R   CD   C + + +  HL  H  R H  +       KP+ C+   C   F R + L R
Sbjct: 14  RIHYCDYPGCTKVYTKSSHLKAH-LRTHTGE-------KPYKCTWEGCDWRFARSDELTR 65

Query: 61  HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVC 120
           H + H              TG                               +PFQC VC
Sbjct: 66  HYRKH--------------TG------------------------------AKPFQCGVC 81

Query: 121 NQGFVRKEHLVRHRKR 136
           N+ F R +HL  H KR
Sbjct: 82  NRSFSRSDHLALHMKR 97

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 59.9 bits (146), Expect = 8e-12
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 10/63 (15%)

Query: 5  RPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
          +P++C  + C+  F R + L RH  R H      GA  KPF C VC ++F+R +HL  H 
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHY-RKH-----TGA--KPFQCGVCNRSFSRSDHLALHM 95

Query: 63 QIH 65
          + H
Sbjct: 96 KRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 4  VRPFQCDVCNQGFVRKEHLVRHRKR 28
           +PFQC VCN+ F R +HL  H KR
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKR 97

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ- 63
          +P++C +C+  F +   +  H                 F C  C     R+  L  H + 
Sbjct: 14 KPYECYICHARFTQSGTMKMH-ILQK-----HTENVAKFHCPHCDTVIARKSDLGVHLRK 67

Query: 64 IHARE 68
           H+  
Sbjct: 68 QHSYS 72

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ- 171
           +P++C +C+  F +   +  H                 F C  C     R+  L  H + 
Sbjct: 14  KPYECYICHARFTQSGTMKMH-ILQK-----HTENVAKFHCPHCDTVIARKSDLGVHLRK 67

Query: 172 IHARE 176
            H+  
Sbjct: 68  QHSYS 72

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 60.2 bits (147), Expect = 4e-12
 Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 42/98 (42%)

Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
           KP+ C +C   FT+   ++ H                                       
Sbjct: 14  KPYECYICHARFTQSGTMKMHILQK--------------HT------------------- 40

Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAH 138
                    + V  F C  C+    RK  L  H ++ H
Sbjct: 41  ---------ENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C  C  V +R+S L  HL++ H
Sbjct: 47  HCPHCDTVIARKSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 4  VRPFQCDVCNQGFVRKEHLVRHRKRAH 30
          V  F C  C+    RK  L  H ++ H
Sbjct: 43 VAKFHCPHCDTVIARKSDLGVHLRKQH 69

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 61.7 bits (151), Expect = 1e-12
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          +P+ C  C + F R   LV+H+ R H        E KP+ C  CGK F++   L  HQ+I
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQ-RVHT------GE-KPYKCLECGKAFSQNSGLINHQRI 64

Query: 65 HARE 68
          H   
Sbjct: 65 HTSG 68

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 61.7 bits (151), Expect = 1e-12
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           +P+ C  C + F R   LV+H+ R H        E KP+ C  CGK F++   L  HQ+I
Sbjct: 13  KPYGCVECGKAFSRSSILVQHQ-RVHT------GE-KPYKCLECGKAFSQNSGLINHQRI 64

Query: 173 HARE 176
           H   
Sbjct: 65  HTSG 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 60.9 bits (149), Expect = 2e-12
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 6  PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 65
          P++CD C   F  K +L  H K  H        E KP+ C++CG  F R  +L+ H +IH
Sbjct: 17 PYKCDRCQASFRYKGNLASH-KTVHT------GE-KPYRCNICGAQFNRPANLKTHTRIH 68

Query: 66 ARE 68
          + E
Sbjct: 69 SGE 71

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 60.9 bits (149), Expect = 2e-12
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
           P++CD C   F  K +L  H K  H        E KP+ C++CG  F R  +L+ H +IH
Sbjct: 17  PYKCDRCQASFRYKGNLASH-KTVHT------GE-KPYRCNICGAQFNRPANLKTHTRIH 68

Query: 174 ARE 176
           + E
Sbjct: 69  SGE 71

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 51.3 bits (124), Expect = 5e-09
 Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 53/118 (44%)

Query: 21  HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT 80
           H   H            ++ KP+ C  C  +F  + +L  H+ +H  E            
Sbjct: 4   HHHHH-SHMT------HSD-KPYKCDRCQASFRYKGNLASHKTVHTGE------------ 43

Query: 81  GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAH 138
                                           +P++C++C   F R  +L  H  R H
Sbjct: 44  --------------------------------KPYRCNICGAQFNRPANLKTH-TRIH 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 8/48 (16%)

Query: 129 HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
           H   H            ++ KP+ C  C  +F  + +L  H+ +H  E
Sbjct: 4   HHHHH-SHMT------HSD-KPYKCDRCQASFRYKGNLASHKTVHTGE 43

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 61.0 bits (149), Expect = 2e-12
 Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 57/125 (45%)

Query: 41  KPFSCSV--CGKTFTRREHLRRHQQI-HARELLQSSMDMSALTGLAEEVFPTPLRLDENV 97
               C    CG+ F+ R++L  H++  H  +                             
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ----------------------------- 36

Query: 98  RRWVACQRIEGIDVVRPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV 155
                          + F C    C + F  K+HL  H  + H          + + C  
Sbjct: 37  ---------------KSFSCPEPACGKSFNFKKHLKEH-MKLHSDT-------RDYICEF 73

Query: 156 CGKTF 160
            G + 
Sbjct: 74  SGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 5  RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRR 60
              CD   C + F  +++L  H+K  H        + K FSC    CGK+F  ++HL+ 
Sbjct: 6  SGMPCDFPGCGRIFSNRQYLNHHKKYQHI------HQ-KSFSCPEPACGKSFNFKKHLKE 58

Query: 61 HQQIH 65
          H ++H
Sbjct: 59 HMKLH 63

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRR 168
               CD   C + F  +++L  H+K  H        + K FSC    CGK+F  ++HL+ 
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHI------HQ-KSFSCPEPACGKSFNFKKHLKE 58

Query: 169 HQQIH 173
           H ++H
Sbjct: 59  HMKLH 63

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 10/50 (20%)

Query: 5  RPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 52
          + F C    C + F  K+HL  H  + H          + + C   G + 
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEH-MKLHSDT-------RDYICEFSGPSS 78

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 60.9 bits (149), Expect = 2e-12
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          R ++CD C + F     L +H +R H        E KP+ C  CGK F +R HL  H ++
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHT------GE-KPYKCDECGKAFIQRSHLIGHHRV 68

Query: 65 H 65
          H
Sbjct: 69 H 69

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 60.9 bits (149), Expect = 2e-12
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           R ++CD C + F     L +H +R H        E KP+ C  CGK F +R HL  H ++
Sbjct: 17  RRYKCDECGKSFSHSSDLSKH-RRTHT------GE-KPYKCDECGKAFIQRSHLIGHHRV 68

Query: 173 H 173
           H
Sbjct: 69  H 69

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 52.8 bits (128), Expect = 1e-09
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 53/118 (44%)

Query: 21  HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT 80
              R  +           E + + C  CGK+F+    L +H++ H              T
Sbjct: 5   SSGRS-EWQQ-------RERRRYKCDECGKSFSHSSDLSKHRRTH--------------T 42

Query: 81  GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAH 138
           G  E                            +P++CD C + F+++ HL+ H  R H
Sbjct: 43  G--E----------------------------KPYKCDECGKAFIQRSHLIGH-HRVH 69

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 8/45 (17%)

Query: 129 HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
              R  +           E + + C  CGK+F+    L +H++ H
Sbjct: 5   SSGRS-EWQQ-------RERRRYKCDECGKSFSHSSDLSKHRRTH 41

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 36.7 bits (86), Expect = 9e-04
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KCD C K F +RSHL+ H  R+H
Sbjct: 48  KCDECGKAFIQRSHLIGH-HRVH 69

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 28/128 (21%), Positives = 41/128 (32%), Gaps = 53/128 (41%)

Query: 48  CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIE 107
           CGK F +   L+ HQ  H              T                           
Sbjct: 9   CGKAFKKHNQLKVHQFSH--------------TQQ------------------------- 29

Query: 108 GIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREH 165
                 P++C    C++ F     L RH ++ H   P +    K  SCS  GKT+T   +
Sbjct: 30  -----LPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCK----KDDSCSFVGKTWT--LY 77

Query: 166 LRRHQQIH 173
           L+   + H
Sbjct: 78  LKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 54.5 bits (132), Expect = 5e-10
 Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 56/136 (41%)

Query: 7   FQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQ 62
           + C    C + F +   L  H + +H        +  P+ C    C K F+    L+RH+
Sbjct: 2   YVCHFENCGKAFKKHNQLKVH-QFSHT------QQ-LPYECPHEGCDKRFSLPSRLKRHE 53

Query: 63  QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQ 122
           ++H               G                                  + D C+ 
Sbjct: 54  KVH--------------AG------------------------------YPCKKDDSCSF 69

Query: 123 GFVRKEHLVRHRKRAH 138
                   ++H    H
Sbjct: 70  VGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 5  RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
           P++C    C++ F     L RH ++ H   P +    K  SCS  GKT+T   +L+   
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCK----KDDSCSFVGKTWT--LYLKHVA 82

Query: 63 QIH 65
          + H
Sbjct: 83 ECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 12/63 (19%)

Query: 115 FQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQ 170
           + C    C + F +   L  H + +H        +  P+ C    C K F+    L+RH+
Sbjct: 2   YVCHFENCGKAFKKHNQLKVH-QFSHT------QQ-LPYECPHEGCDKRFSLPSRLKRHE 53

Query: 171 QIH 173
           ++H
Sbjct: 54  KVH 56

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           K D C  V    +  L+H+   H
Sbjct: 63  KDDSCSFVGKTWTLYLKHVAECH 85

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
           P +C  C+     K  L  H +R H  D       +PF C+ C     +  +L +H + 
Sbjct: 8  HPEKCSECSYSCSSKAALRIH-ERIHCTD-------RPFKCNYCSFDTKQPSNLSKHMKK 59

Query: 65 H 65
           
Sbjct: 60 F 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
            P +C  C+     K  L  H +R H  D       +PF C+ C     +  +L +H + 
Sbjct: 8   HPEKCSECSYSCSSKAALRIH-ERIHCTD-------RPFKCNYCSFDTKQPSNLSKHMKK 59

Query: 173 H 173
            
Sbjct: 60  F 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 51.0 bits (123), Expect = 7e-09
 Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 45/98 (45%)

Query: 41  KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
            P  CS C  + + +  LR H++IH                                   
Sbjct: 8   HPEKCSECSYSCSSKAALRIHERIH--------------CT------------------- 34

Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAH 138
                       RPF+C+ C+    +  +L +H  +  
Sbjct: 35  -----------DRPFKCNYCSFDTKQPSNLSKH-MKKF 60

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 10/63 (15%)

Query: 5  RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
          RP+ C V  C++ F R + L RH  R H          KPF C +C + F+R +HL  H 
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHI-RIH-------TGQKPFQCRICMRNFSRSDHLTTHI 69

Query: 63 QIH 65
          + H
Sbjct: 70 RTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 10/63 (15%)

Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
           RP+ C V  C++ F R + L RH  R H          KPF C +C + F+R +HL  H 
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHI-RIH-------TGQKPFQCRICMRNFSRSDHLTTHI 69

Query: 171 QIH 173
           + H
Sbjct: 70  RTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 46/98 (46%)

Query: 41  KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
           +P++C V  C + F+R + L RH +IH              TG                 
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIH--------------TG----------------- 46

Query: 99  RWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKR 136
                         +PFQC +C + F R +HL  H + 
Sbjct: 47  -------------QKPFQCRICMRNFSRSDHLTTHIRT 71

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
           +P++C V  C + F+R + L RH +IH  +
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQ 47

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 4  VRPFQCDVCNQGFVRKEHLVRHRKR 28
           +PFQC +C + F R +HL  H + 
Sbjct: 47 QKPFQCRICMRNFSRSDHLTTHIRT 71

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 53.7 bits (130), Expect = 4e-10
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT 53
          +P+ C  C +GF R +HL  H K+ H       +E +P  C V     +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHT------SE-RPHKCQVWVSGPS 52

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 53.7 bits (130), Expect = 4e-10
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT 161
           +P+ C  C +GF R +HL  H K+ H       +E +P  C V     +
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHT------SE-RPHKCQVWVSGPS 52

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 41 KPFSCSVCGKTFTRREHLRRH-QQIH 65
          KP+ C  CGK F+R +HL  H +Q+H
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVH 36

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 149 KPFSCSVCGKTFTRREHLRRH-QQIH 173
           KP+ C  CGK F+R +HL  H +Q+H
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVH 36

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C  C K FSR  HL  H+K++H
Sbjct: 14  ICQSCGKGFSRPDHLNGHIKQVH 36

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 53.4 bits (129), Expect = 4e-10
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          K ++C+ CGK FTR  HL RHQ+IH R+
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRK 38

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 53.4 bits (129), Expect = 4e-10
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           K ++C+ CGK FTR  HL RHQ+IH R+
Sbjct: 11  KSYNCNECGKAFTRIFHLTRHQKIHTRK 38

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSS 319
            C+ C K F+R  HL RH +++H     PSS
Sbjct: 14  NCNECGKAFTRIFHLTRH-QKIHTRKSGPSS 43

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 54.2 bits (130), Expect = 8e-10
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA-KPFSCSVCGKTFTRREHLRRHQQ 63
                 C++ F     LV H    H   P +         C   GK+F  +  L  H +
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83

Query: 64 IHARE 68
          +H  E
Sbjct: 84 VHTGE 88

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 54.2 bits (130), Expect = 8e-10
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA-KPFSCSVCGKTFTRREHLRRHQQ 171
                  C++ F     LV H    H   P +         C   GK+F  +  L  H +
Sbjct: 24  LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83

Query: 172 IHARE 176
           +H  E
Sbjct: 84  VHTGE 88

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          +PF C+ CGK F RR HL  H ++H+RE
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSRE 38

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           +PF C+ CGK F RR HL  H ++H+RE
Sbjct: 11  RPFKCNECGKGFGRRSHLAGHLRLHSRE 38

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC+ C K F RRSHL  H  RLH
Sbjct: 14  KCNECGKGFGRRSHLAGH-LRLH 35

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
          KP+SC+ C +TF+    L +HQ++H  +   SS
Sbjct: 9  KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
           KP+SC+ C +TF+    L +HQ++H  +   SS
Sbjct: 9   KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSS 319
            C  CK+ FS  + L++H +++H +   PSS
Sbjct: 12  SCAECKETFSDNNRLVQH-QKMHTVKSGPSS 41

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          +P+ C+ CGK F R  HL  H + H RE
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFRE 38

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           +P+ C+ CGK F R  HL  H + H RE
Sbjct: 11  RPYGCNECGKNFGRHSHLIEHLKRHFRE 38

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C+ C K F R SHL+ H  + H
Sbjct: 14  GCNECGKNFGRHSHLIEH-LKRH 35

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
          RP+ C+ C + F R  HL+ H  + H          K    S
Sbjct: 11 RPYGCNECGKNFGRHSHLIEH-LKRH-------FREKSSGPS 44

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
           RP+ C+ C + F R  HL+ H  + H          K    S
Sbjct: 11  RPYGCNECGKNFGRHSHLIEH-LKRH-------FREKSSGPS 44

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 4e-09
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C  C KTF +  HL +H+++H  E
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 4e-09
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C  C KTF +  HL +H+++H  E
Sbjct: 11  KPYECKECRKTFIQIGHLNQHKRVHTGE 38

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           +C  C+K F +  HL +H KR+H
Sbjct: 14  ECKECRKTFIQIGHLNQH-KRVH 35

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
           P+ C  CGK+FT+R  L  HQ+  ++ 
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQS 37

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
            P+ C  CGK+FT+R  L  HQ+  ++ 
Sbjct: 10  TPYLCGQCGKSFTQRGSLAVHQRSCSQS 37

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          K   C  CG+ FT + HL +HQ+IH
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIH 35

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           K   C  CG+ FT + HL +HQ+IH
Sbjct: 11  KSHQCHECGRGFTLKSHLNQHQRIH 35

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
           P+ CS C K+F+ +  L  HQ++H RE
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTRE 38

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
            P+ CS C K+F+ +  L  HQ++H RE
Sbjct: 11  NPYKCSQCEKSFSGKLRLLVHQRMHTRE 38

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 2e-08
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KPF C +CGK+F  R  L RH  +H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 2e-08
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KPF C +CGK+F  R  L RH  +H
Sbjct: 11  KPFKCDICGKSFCGRSRLNRHSMVH 35

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KCD+C K F  RS L RH   +H
Sbjct: 14  KCDICGKSFCGRSRLNRH-SMVH 35

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 2e-08
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+SC+VCGK F    HL +H ++H +E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 2e-08
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+SC+VCGK F    HL +H ++H +E
Sbjct: 11  KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C+VC K F   +HL +H  R+H
Sbjct: 14  SCNVCGKAFVLSAHLNQH-LRVH 35

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 12/65 (18%)

Query: 5  RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRR 60
          R   C    C + + +  HL  H  R H  +       KPFSCS   C + F R + L R
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAH-TRTHTGE-------KPFSCSWKGCERRFARSDELSR 67

Query: 61 HQQIH 65
          H++ H
Sbjct: 68 HRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 12/65 (18%)

Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRR 168
           R   C    C + + +  HL  H  R H  +       KPFSCS   C + F R + L R
Sbjct: 16  RSHICSHPGCGKTYFKSSHLKAH-TRTHTGE-------KPFSCSWKGCERRFARSDELSR 67

Query: 169 HQQIH 173
           H++ H
Sbjct: 68  HRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 49/102 (48%)

Query: 41  KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
           +   CS   CGKT+ +  HL+ H + H  E                              
Sbjct: 16  RSHICSHPGCGKTYFKSSHLKAHTRTHTGE------------------------------ 45

Query: 99  RWVACQRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAH 138
                         +PF C    C + F R + L RHR R H
Sbjct: 46  --------------KPFSCSWKGCERRFARSDELSRHR-RTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
           +   CS   CGKT+ +  HL+ H + H  E
Sbjct: 16  RSHICSHPGCGKTYFKSSHLKAHTRTHTGE 45

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KPF CS C K F+ + +L  HQQ HA E
Sbjct: 9  KPFGCSCCEKAFSSKSYLLVHQQTHAEE 36

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KPF CS C K F+ + +L  HQQ HA E
Sbjct: 9   KPFGCSCCEKAFSSKSYLLVHQQTHAEE 36

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C VC K FT++ HL +HQ+ H  E
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C VC K FT++ HL +HQ+ H  E
Sbjct: 11  KPYECKVCSKAFTQKAHLAQHQKTHTGE 38

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.2 bits (116), Expect = 3e-08
 Identities = 15/25 (60%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C  CGK F R  HL RHQ IH
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIH 35

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.2 bits (116), Expect = 3e-08
 Identities = 15/25 (60%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C  CGK F R  HL RHQ IH
Sbjct: 11  KPYKCHECGKVFRRNSHLARHQLIH 35

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC  C KVF R SHL RH + +H
Sbjct: 14  KCHECGKVFRRNSHLARH-QLIH 35

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C  CG  F +  HLR H  IH
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C  CG  F +  HLR H  IH
Sbjct: 10  KPYKCETCGARFVQVAHLRAHVLIH 34

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KPF C  CGK FT+  HL  HQ++H  E
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KPF C  CGK FT+  HL  HQ++H  E
Sbjct: 11  KPFQCEECGKRFTQNSHLHSHQRVHTGE 38

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C+ CGK+F ++ HL RH++IH  E
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGE 38

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C+ CGK+F ++ HL RH++IH  E
Sbjct: 11  KPYICNECGKSFIQKSHLNRHRRIHTGE 38

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KPF C  CGK F +  HL  H +IH  E
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGE 38

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KPF C  CGK F +  HL  H +IH  E
Sbjct: 11  KPFKCKECGKAFRQNIHLASHLRIHTGE 38

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C  CGK + RR +L  HQ++H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVH 35

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C  CGK + RR +L  HQ++H
Sbjct: 11  KPYKCEDCGKGYNRRLNLDMHQRVH 35

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC+ C K ++RR +L  H +R+H
Sbjct: 14  KCEDCGKGYNRRLNLDMH-QRVH 35

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
           PF CS CGK FT + +L  HQ+IH  E
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGE 38

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
            PF CS CGK FT + +L  HQ+IH  E
Sbjct: 11  NPFICSECGKVFTHKTNLIIHQKIHTGE 38

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ CS CGK+F+    L +H   H RE
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTRE 38

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ CS CGK+F+    L +H   H RE
Sbjct: 11  KPYQCSECGKSFSGSYRLTQHWITHTRE 38

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           +C  C K FS    L +H    H
Sbjct: 14  QCSECGKSFSGSYRLTQH-WITH 35

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 15/25 (60%), Positives = 17/25 (68%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ CS CGK FTR+  L  HQQ H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSH 35

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 15/25 (60%), Positives = 17/25 (68%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ CS CGK FTR+  L  HQQ H
Sbjct: 11  KPYKCSDCGKAFTRKSGLHIHQQSH 35

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          K F C+ CGK FTR+  L  HQ+IH
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIH 35

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           K F C+ CGK FTR+  L  HQ+IH
Sbjct: 11  KHFECTECGKAFTRKSTLSMHQKIH 35

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          K + C  C   F++   LR HQ +H
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVH 35

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           K + C  C   F++   LR HQ +H
Sbjct: 11  KTWKCRECDMCFSQASSLRLHQNVH 35

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 5e-08
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KPF C  CGK++ +R HL +HQ++H
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVH 35

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 5e-08
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KPF C  CGK++ +R HL +HQ++H
Sbjct: 11  KPFKCGECGKSYNQRVHLTQHQRVH 35

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 5e-08
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KPF C  CGK FT+   L  HQ++H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 5e-08
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KPF C  CGK FT+   L  HQ++H
Sbjct: 11  KPFKCEECGKRFTQNSQLHSHQRVH 35

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 47.9 bits (114), Expect = 5e-08
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
           PF CS C + FT+R +L +H++ HAR+   SS
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 47.9 bits (114), Expect = 5e-08
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
            PF CS C + FT+R +L +H++ HAR+   SS
Sbjct: 11  NPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSS 319
           KC  C +VF++R++L++H +R H     PSS
Sbjct: 14  KCSKCDRVFTQRNYLVQH-ERTHARKSGPSS 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 5e-08
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C+ CGK FT+  HL RH+ IH  E
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 5e-08
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C+ CGK FT+  HL RH+ IH  E
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRGIHTGE 38

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC+ C KVF++ SHL RH + +H
Sbjct: 14  KCNECGKVFTQNSHLARH-RGIH 35

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C  CGK + RR  L  HQ++H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVH 35

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C  CGK + RR  L  HQ++H
Sbjct: 11  KPYKCVECGKGYKRRLDLDFHQRVH 35

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.6 bits (114), Expect = 5e-08
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP  C+ CGK F  +  L  HQ+ H  +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDD 38

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.6 bits (114), Expect = 5e-08
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP  C+ CGK F  +  L  HQ+ H  +
Sbjct: 11  KPCKCTECGKAFCWKSQLIMHQRTHVDD 38

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ CGK FT R +L  HQ+IH
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIH 35

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ CGK FT R +L  HQ+IH
Sbjct: 11  KPYRCAECGKAFTDRSNLFTHQKIH 35

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C VCGK F    HL +H  +H+ E
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C VCGK F    HL +H  +H+ E
Sbjct: 11  KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC VC K F   SHL++H   +H
Sbjct: 14  KCQVCGKAFRVSSHLVQH-HSVH 35

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KPF C  CGK F+RR  L  H ++H  E
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGE 38

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KPF C  CGK F+RR  L  H ++H  E
Sbjct: 11  KPFKCVECGKGFSRRSALNVHHKLHTGE 38

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C+ CGK FT+  HL RH+ IH  E
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGE 38

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C+ CGK FT+  HL RH+ IH  E
Sbjct: 11  KPYKCNECGKVFTQNSHLVRHRGIHTGE 38

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC+ C KVF++ SHL+RH + +H
Sbjct: 14  KCNECGKVFTQNSHLVRH-RGIH 35

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          +P+ C+VCGK FT R +L +HQ+IH
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIH 35

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           +P+ C+VCGK FT R +L +HQ+IH
Sbjct: 11  RPYICTVCGKAFTDRSNLIKHQKIH 35

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C+ CGK FT+  HL RH+ IH  E
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C+ CGK FT+  HL RH+ IH  E
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRGIHTGE 38

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC+ C KVF++ SHL RH + +H
Sbjct: 14  KCNECGKVFTQNSHLARH-RGIH 35

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ CS CGK+FT +  LR HQ+ H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCH 35

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ CS CGK+FT +  LR HQ+ H
Sbjct: 11  KPYKCSDCGKSFTWKSRLRIHQKCH 35

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 49.9 bits (118), Expect = 7e-08
 Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 22/122 (18%)

Query: 48  CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIE 107
                T  E  R HQ    ++ L  ++  + +          P  LDE+        R+ 
Sbjct: 20  IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLI--------HNPQLLDESSYL----YRLL 67

Query: 108 GIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLR 167
               +  F C +C   F     L +H +                 C VC K FT  +   
Sbjct: 68  ASKAISQFVCPLCLMPFSSSVSLKQHIRYTE----------HTKVCPVCKKEFTSTDSAL 117

Query: 168 RH 169
            H
Sbjct: 118 DH 119

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 10/59 (16%)

Query: 3   VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 61
            +  F C +C   F     L +H +                 C VC K FT  +    H
Sbjct: 71  AISQFVCPLCLMPFSSSVSLKQHIRYTE----------HTKVCPVCKKEFTSTDSALDH 119

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
           P+ C  CGK F+R++ L  HQ+ H+ +
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQ 38

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
            P+ C  CGK F+R++ L  HQ+ H+ +
Sbjct: 11  NPYECCECGKVFSRKDQLVSHQKTHSGQ 38

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSS 319
           +C  C KVFSR+  L+ H ++ H+    PSS
Sbjct: 14  ECCECGKVFSRKDQLVSH-QKTHSGQSGPSS 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ CGK FT+  HL  HQ+IH
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ CGK FT+  HL  HQ+IH
Sbjct: 11  KPYKCNECGKVFTQNSHLANHQRIH 35

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C+ CGK FT R +L +HQ+IH ++
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQ 38

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C+ CGK FT R +L +HQ+IH ++
Sbjct: 11  KPYICAECGKAFTIRSNLIKHQKIHTKQ 38

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 15/25 (60%), Positives = 20/25 (80%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ CS+CGK+FT++  L  HQQIH
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIH 35

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 15/25 (60%), Positives = 20/25 (80%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ CS+CGK+FT++  L  HQQIH
Sbjct: 11  KPYECSICGKSFTKKSQLHVHQQIH 35

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 8e-08
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ CS CGK F R  HL  H++IH   
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGY 38

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 8e-08
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ CS CGK F R  HL  H++IH   
Sbjct: 11  KPYKCSECGKAFHRHTHLNEHRRIHTGY 38

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC  C K F R +HL  H +R+H
Sbjct: 14  KCSECGKAFHRHTHLNEH-RRIH 35

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Length = 29

 Score = 46.9 bits (112), Expect = 8e-08
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          + F C VC + F R+EHL+RH + H  E
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNE 28

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Length = 29

 Score = 46.9 bits (112), Expect = 8e-08
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           + F C VC + F R+EHL+RH + H  E
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNE 28

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Length = 29

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAH 30
          R F C+VC + F R+EHL RH  R+H
Sbjct: 1  RSFVCEVCTRAFARQEHLKRH-YRSH 25

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Length = 29

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
           R F C+VC + F R+EHL RH  R+H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRH-YRSH 25

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 47.2 bits (113), Expect = 8e-08
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KPF C+ CGK+F  + +L  HQ+IH
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIH 35

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 47.2 bits (113), Expect = 8e-08
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KPF C+ CGK+F  + +L  HQ+IH
Sbjct: 11  KPFECTHCGKSFRAKGNLVTHQRIH 35

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 8e-08
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ CGK FT+  HL RH+++H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVH 35

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 8e-08
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ CGK FT+  HL RH+++H
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRRVH 35

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC+ C KVF++ SHL RH +R+H
Sbjct: 14  KCNECGKVFTQNSHLARH-RRVH 35

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 46.8 bits (112), Expect = 8e-08
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          + + C  CGK+F ++  L  H++IH
Sbjct: 9  RVYECQECGKSFRQKGSLTLHERIH 33

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 46.8 bits (112), Expect = 8e-08
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           + + C  CGK+F ++  L  H++IH
Sbjct: 9   RVYECQECGKSFRQKGSLTLHERIH 33

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 47.1 bits (113), Expect = 9e-08
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C  CGK F++  HL +HQ++H  E
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGE 38

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 47.1 bits (113), Expect = 9e-08
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C  CGK F++  HL +HQ++H  E
Sbjct: 11  KPYECKECGKAFSQTTHLIQHQRVHTGE 38

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          K + C VCGK F++  HL+ HQ++H
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVH 35

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           K + C VCGK F++  HL+ HQ++H
Sbjct: 11  KCYKCDVCGKEFSQSSHLQTHQRVH 35

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KCDVC K FS+ SHL  H +R+H
Sbjct: 14  KCDVCGKEFSQSSHLQTH-QRVH 35

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C  CGK F ++ +L +HQ+IH
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C  CGK F ++ +L +HQ+IH
Sbjct: 11  KPYRCGECGKAFAQKANLTQHQRIH 35

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KPF C  CG  F+    L +H + H R 
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERT 38

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KPF C  CG  F+    L +H + H R 
Sbjct: 11  KPFQCKECGMNFSWSCSLFKHLRSHERT 38

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ CGK F    +L RHQ+IH
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIH 35

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ CGK F    +L RHQ+IH
Sbjct: 11  KPYKCNECGKVFRHNSYLSRHQRIH 35

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KPF CS C K F  + +L  HQ+ H  E
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGE 38

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KPF CS C K F  + +L  HQ+ H  E
Sbjct: 11  KPFECSECQKAFNTKSNLIVHQRTHTGE 38

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ CGK FT+  HL  H +IH
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIH 35

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ CGK FT+  HL  H +IH
Sbjct: 11  KPYKCNECGKVFTQNSHLTNHWRIH 35

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC+ C KVF++ SHL  H  R+H
Sbjct: 14  KCNECGKVFTQNSHLTNH-WRIH 35

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KPF C+ CGK+F+    L  HQ+IH
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIH 35

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KPF C+ CGK+F+    L  HQ+IH
Sbjct: 11  KPFECAECGKSFSISSQLATHQRIH 35

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          +P  C+ CGK+F +  HL +HQ+IH  E
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGE 38

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           +P  C+ CGK+F +  HL +HQ+IH  E
Sbjct: 11  RPHKCNECGKSFIQSAHLIQHQRIHTGE 38

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ CS CGK+F ++  L  HQ+IH
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIH 35

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ CS CGK+F ++  L  HQ+IH
Sbjct: 11  KPYECSDCGKSFIKKSQLHVHQRIH 35

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          K ++C  CGK+F+R   L +H+++H+ E
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGE 38

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           K ++C  CGK+F+R   L +H+++H+ E
Sbjct: 11  KLYNCKECGKSFSRAPCLLKHERLHSGE 38

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          K F C+ C KTFT+   L  HQ+IH
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIH 35

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           K F C+ C KTFT+   L  HQ+IH
Sbjct: 11  KLFKCNECKKTFTQSSSLTVHQRIH 35

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C+ CGKTF+++  L  HQ+ H  E
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C+ CGKTF+++  L  HQ+ H  E
Sbjct: 11  KPYGCNECGKTFSQKSILSAHQRTHTGE 38

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          + + CS CGK F R+  L  HQ+IH  E
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGE 38

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           + + CS CGK F R+  L  HQ+IH  E
Sbjct: 11  RHYECSECGKAFARKSTLIMHQRIHTGE 38

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ CS C KTF+ +  L  HQ+ H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ CS C KTF+ +  L  HQ+ H
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSH 35

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KPF C  CGK F+    L +H++IH  E
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGE 38

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KPF C  CGK F+    L +H++IH  E
Sbjct: 11  KPFDCIDCGKAFSDHIGLNQHRRIHTGE 38

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
           P+ C  CGK F+R+  L  HQ+ HA E
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGE 38

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
            P+ C  CGK F+R+  L  HQ+ HA E
Sbjct: 11  NPYECHECGKAFSRKYQLISHQRTHAGE 38

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          + + CS CGK F ++  L  HQ+IH
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIH 35

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           + + CS CGK F ++  L  HQ+IH
Sbjct: 11  RHYECSECGKAFIQKSTLSMHQRIH 35

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ CSVCGK F+ R+ L  HQ+IH
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ CSVCGK F+ R+ L  HQ+IH
Sbjct: 11  KPYECSVCGKAFSHRQSLSVHQRIH 35

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 17/105 (16%), Positives = 24/105 (22%), Gaps = 12/105 (11%)

Query: 40  AKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRR 99
           A  F C  C   +     L  H         +     +          P    L E   +
Sbjct: 17  ASKFRCKDCSAAYDTLVELTVHMNETGH--YRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74

Query: 100 WVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRH-RKRAHDLDPP 143
                     D  +  +C  C   F   + L  H  K  H     
Sbjct: 75  ---------EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 28/97 (28%)

Query: 5   RPFQCDVCNQGFVRKEHLVRH-------------------------RKRAHDLDPPEGAE 39
             F+C  C+  +     L  H                         RKR+      +   
Sbjct: 18  SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77

Query: 40  AKPFSCSVCGKTFTRREHLRRH--QQIHARE-LLQSS 73
            K   C  CG +F   + L  H  +  H ++    SS
Sbjct: 78  QKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          +   CS CGK F +  +  +H++IH
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIH 35

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           +   CS CGK F +  +  +H++IH
Sbjct: 11  RGHRCSDCGKFFLQASNFIQHRRIH 35

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
           P+ CS CGK F R++ L  HQ+ HA E
Sbjct: 9  NPYECSECGKAFNRKDQLISHQRTHAGE 36

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
            P+ CS CGK F R++ L  HQ+ HA E
Sbjct: 9   NPYECSECGKAFNRKDQLISHQRTHAGE 36

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 64/381 (16%), Positives = 119/381 (31%), Gaps = 102/381 (26%)

Query: 1   IDVVR--PFQCDVCNQGF---VRKEH-----LVRHRKRAHDLDPPEGAEAKPFSCSVCGK 50
           +DV      QC +  + F   ++  +     L   +K  + +DP   + +   S ++  +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLR 226

Query: 51  TFTRREHLRR--HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR-RWVA----- 102
             + +  LRR    + +   LL               V      L  NV+          
Sbjct: 227 IHSIQAELRRLLKSKPYENCLL---------------V------LL-NVQNAKAWNAFNL 264

Query: 103 -CQ-----RIEGI-DVV-----RPFQCDVCNQGFVRKEHLVRHRK----RAHDLDPPEGA 146
            C+     R + + D +          D  +      E      K    R  DL P E  
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVL 323

Query: 147 EAKPFSCSVCGKTFTRREHLRRHQQI--HARELLQSSMDMSALTGLAGMGGELQMPLFAA 204
              P   S+  ++   R+ L           + L + ++ S L  L     E +  +F  
Sbjct: 324 TTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTTIIESS-LNVLEP--AEYR-KMFDR 377

Query: 205 -SLMPEISMSSGGSGNSSPRVKKE--GDDGSEDPMEV--ELPPPEASSSPLNRPAAPAAL 259
            S+ P        S +    +      D    D M V  +L       S + +    + +
Sbjct: 378 LSVFPP-------SAHIPTILLSLIWFDVIKSDVMVVVNKL----HKYSLVEKQPKESTI 426

Query: 260 TALGGIPLAVREKLM------RPVIPRERPPKPIPKCDVCKK-----VFSRRSHLLRHLK 308
           + +  I L ++ KL       R ++     PK     D+         +S   H+  HLK
Sbjct: 427 S-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHLK 482

Query: 309 RLHNIDPPPSSRNKQVPTYYL 329
            + + +     R       +L
Sbjct: 483 NIEHPE-----RMTLFRMVFL 498

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          K + C+ CGK F+R   L +HQ+IH
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIH 35

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           K + C+ CGK F+R   L +HQ+IH
Sbjct: 11  KRYKCNECGKVFSRNSQLSQHQKIH 35

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C  CGK F  R  L  H  +H  E
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGE 38

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C  CGK F  R  L  H  +H  E
Sbjct: 11  KPYKCEECGKGFICRRDLYTHHMVHTGE 38

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C  CGK +  + +L  HQ++H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVH 35

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C  CGK +  + +L  HQ++H
Sbjct: 11  KPYKCEKCGKGYNSKFNLDMHQKVH 35

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KPF C  CGK F        HQ+ H+ E
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGE 38

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KPF C  CGK F        HQ+ H+ E
Sbjct: 11  KPFKCEECGKGFYTNSQCYSHQRSHSGE 38

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ CGK F+ R  L  HQ IH
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIH 35

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ CGK F+ R  L  HQ IH
Sbjct: 11  KPYECNQCGKAFSVRSSLTTHQAIH 35

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C  CGK F     L RHQ+IH
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIH 35

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C  CGK F     L RHQ+IH
Sbjct: 11  KPYVCDYCGKAFGLSAELVRHQRIH 35

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C +CG  F   + L+ H +IH
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C +CG  F   + L+ H +IH
Sbjct: 10  KPYPCEICGTRFRHLQTLKSHLRIH 34

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C+ CGK F    +L  HQ IH  E
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGE 38

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C+ CGK F    +L  HQ IH  E
Sbjct: 11  KPYKCNECGKAFRAHSNLTTHQVIHTGE 38

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ CS CGK F+ + +L  H + H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTH 35

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ CS CGK F+ + +L  H + H
Sbjct: 11  KPYGCSECGKAFSSKSYLIIHMRTH 35

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ C K F  + +L  HQ+ H
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ C K F  + +L  HQ+ H
Sbjct: 11  KPYECNECQKAFNTKSNLMVHQRTH 35

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C VC K F+    L +HQ++H+ E
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGE 38

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C VC K F+    L +HQ++H+ E
Sbjct: 11  KPYECDVCRKAFSHHASLTQHQRVHSGE 38

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP++C  CGK F     L+ HQ+IH
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIH 35

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP++C  CGK F     L+ HQ+IH
Sbjct: 11  KPYNCEECGKAFIHDSQLQEHQRIH 35

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C VC K+F     L  HQ+IH
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIH 35

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C VC K+F     L  HQ+IH
Sbjct: 11  KPYKCDVCHKSFRYGSSLTVHQRIH 35

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ CGK F++   L RHQ++H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ CGK F++   L RHQ++H
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVH 35

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ CGK F  R  L  HQ  H
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATH 35

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ CGK F  R  L  HQ  H
Sbjct: 11  KPYKCNECGKAFRARSSLAIHQATH 35

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C+ CGK F++   L RHQ+IH  E
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGE 38

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C+ CGK F++   L RHQ+IH  E
Sbjct: 11  KPYKCNECGKAFSQTSKLARHQRIHTGE 38

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.4 bits (106), Expect = 7e-07
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ CGK F  + +L  H + H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.4 bits (106), Expect = 7e-07
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ CGK F  + +L  H + H
Sbjct: 11  KPYVCNECGKAFRSKSYLIIHTRTH 35

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 44.2 bits (104), Expect = 9e-07
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 34 PPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
             G   K  +C +CGK F    HL RH+  H+ E
Sbjct: 4  GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGE 38

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 44.2 bits (104), Expect = 9e-07
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 142 PPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
              G   K  +C +CGK F    HL RH+  H+ E
Sbjct: 4   GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGE 38

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 8/44 (18%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC 48
          +   C++C + F    HL RH K +H       +  KP+S    
Sbjct: 11 KQVACEICGKIFRDVYHLNRH-KLSH-------SGEKPYSSGPS 46

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 8/44 (18%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC 156
           +   C++C + F    HL RH K +H       +  KP+S    
Sbjct: 11  KQVACEICGKIFRDVYHLNRH-KLSH-------SGEKPYSSGPS 46

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 44.1 bits (105), Expect = 9e-07
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C  CGK F+++  L  H ++H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 44.1 bits (105), Expect = 9e-07
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C  CGK F+++  L  H ++H
Sbjct: 10  KPYRCDQCGKAFSQKGSLIVHIRVH 34

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C+ CGK F  +  L  H++ HA  
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C+ CGK F  +  L  H++ HA  
Sbjct: 11  KPYECNECGKAFIWKSLLIVHERTHAGV 38

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C+ CGK F+    L  HQ IH
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIH 35

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C+ CGK F+    L  HQ IH
Sbjct: 11  KPYMCNECGKAFSVYSSLTTHQVIH 35

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP++C  CGK+F     L +HQ++H+ E
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGE 38

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP++C  CGK+F     L +HQ++H+ E
Sbjct: 11  KPYNCKECGKSFRWASCLLKHQRVHSGE 38

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C  CGK F       +HQ++H  +
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQ 38

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C  CGK F       +HQ++H  +
Sbjct: 11  KPYKCMECGKAFGDNSSCTQHQRLHTGQ 38

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP  C  CGK+F+    L  HQ+IH
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIH 35

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP  C  CGK+F+    L  HQ+IH
Sbjct: 11  KPHECRECGKSFSFNSQLIVHQRIH 35

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          +P+ C  CGK F  +  L  H++ H
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSH 35

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           +P+ C  CGK F  +  L  H++ H
Sbjct: 11  RPYECIECGKAFKTKSSLICHRRSH 35

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 15/64 (23%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          R  +C  C   F+R+  L R                K   C  C K   +   L + +  
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRR---------------KTPMCEKCRKDSCQEAALNKDEGN 61

Query: 65 HARE 68
           + +
Sbjct: 62 ESGK 65

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 15/64 (23%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           R  +C  C   F+R+  L R                K   C  C K   +   L + +  
Sbjct: 17  RSQKCSKCGIIFIRRSTLSRR---------------KTPMCEKCRKDSCQEAALNKDEGN 61

Query: 173 HARE 176
            + +
Sbjct: 62  ESGK 65

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          K  +C  CGK F     LR HQ++H  E
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGE 38

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           K  +C  CGK F     LR HQ++H  E
Sbjct: 11  KSHTCDECGKNFCYISALRIHQRVHMGE 38

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQ-QIH 65
          KP+ C  CGK F +   L RH    H
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYH 36

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQ-QIH 173
           KP+ C  CGK F +   L RH    H
Sbjct: 11  KPYECIECGKAFIQNTSLIRHWRYYH 36

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KPF C  C ++F+R +HL  H++ H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KPF C  C ++F+R +HL  H++ H
Sbjct: 10  KPFQCPDCDRSFSRSDHLALHRKRH 34

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 4  VRPFQCDVCNQGFVRKEHLVRHRKR 28
          ++PFQC  C++ F R +HL  HRKR
Sbjct: 9  IKPFQCPDCDRSFSRSDHLALHRKR 33

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 112 VRPFQCDVCNQGFVRKEHLVRHRKR 136
           ++PFQC  C++ F R +HL  HRKR
Sbjct: 9   IKPFQCPDCDRSFSRSDHLALHRKR 33

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARE 68
          KPF+C+   CG  F+R + L RH++ H+  
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGV 40

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
           KPF+C+   CG  F+R + L RH++ H+  
Sbjct: 11  KPFACTWPGCGWRFSRSDELSRHRRSHSGV 40

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 7  FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 66
          + C+ C     +   L +H  R H        + +P+ C+ C  +F  + +L +H +  A
Sbjct: 2  YICEECGIRXKKPSMLKKH-IRTH-------TDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53

Query: 67 RE 68
            
Sbjct: 54 HS 55

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 174
           + C+ C     +   L +H  R H        + +P+ C+ C  +F  + +L +H +  A
Sbjct: 2   YICEECGIRXKKPSMLKKH-IRTH-------TDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53

Query: 175 RE 176
             
Sbjct: 54  HS 55

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31

 Score = 38.7 bits (91), Expect = 5e-05
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIH 65
          +PF C+   CGK FTR + L+RH++ H
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTH 27

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31

 Score = 38.7 bits (91), Expect = 5e-05
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIH 173
           +PF C+   CGK FTR + L+RH++ H
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTH 27

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Length = 30

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQ-IHAREL 69
          K ++C +C + FTRR+ L RH Q IH+  L
Sbjct: 1  KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Length = 30

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQ-IHAREL 177
           K ++C +C + FTRR+ L RH Q IH+  L
Sbjct: 1   KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 18/92 (19%)

Query: 5   RPFQCDVCNQGFVRKEHLVRHRKRAHDLDP-----------------PEGAEAKPFSCSV 47
             +QC +CN           H +   +                        E K  +C  
Sbjct: 15  EVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLE 74

Query: 48  CGKTFTRREHLRRHQ-QIHARELLQSSMDMSA 78
           C +TF     + RHQ ++H +  +  +   S+
Sbjct: 75  CMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 18/92 (19%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDP-----------------PEGAEAKPFSCSV 155
             +QC +CN           H +   +                        E K  +C  
Sbjct: 15  EVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLE 74

Query: 156 CGKTFTRREHLRRHQ-QIHARELLQSSMDMSA 186
           C +TF     + RHQ ++H +  +  +   S+
Sbjct: 75  CMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Length = 47

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 39 EAKPFSCSV--CGKTFTRREHLRRHQQIH 65
            K F C    C KTF RR ++R H Q H
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTH 43

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Length = 47

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 147 EAKPFSCSV--CGKTFTRREHLRRHQQIH 173
             K F C    C KTF RR ++R H Q H
Sbjct: 15  PDKTFECLFPGCTKTFKRRYNIRSHIQTH 43

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2 Length = 79

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 9/51 (17%)

Query: 7  FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREH 57
          F C+ C +  V+K  + +H     +         +  SC  CGK F   ++
Sbjct: 11 FTCNACGES-VKKIQVEKHVSNCRN--------CECLSCIDCGKDFWGDDY 52

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2 Length = 79

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 9/51 (17%)

Query: 115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREH 165
           F C+ C +  V+K  + +H     +         +  SC  CGK F   ++
Sbjct: 11  FTCNACGES-VKKIQVEKHVSNCRN--------CECLSCIDCGKDFWGDDY 52

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHAR 67
          G + K F C+ C KTF+  ++L +H++IH R
Sbjct: 7  GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHAR 175
           G + K F C+ C KTF+  ++L +H++IH R
Sbjct: 7   GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.95
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.9
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.88
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.84
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.82
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.82
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.78
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.76
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.75
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.74
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.74
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.74
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.73
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.73
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.71
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.68
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.68
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.67
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.67
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.66
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.65
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.65
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.63
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.63
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.62
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.61
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.55
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.54
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.54
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.54
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.52
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.5
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.48
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.48
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.47
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.46
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.46
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.44
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.44
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.43
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.43
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.42
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.42
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.41
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.4
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.39
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.39
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.39
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.37
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.37
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.36
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.36
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.36
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.35
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.35
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.34
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.34
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.33
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.31
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.29
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.29
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.26
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.22
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.17
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.17
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.15
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.09
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.09
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.08
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.07
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.03
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.02
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.01
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.99
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.95
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.94
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.93
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.92
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.91
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.91
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.91
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.91
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.9
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.9
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.89
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.88
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.85
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.84
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.8
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.79
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.79
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.79
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.79
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.78
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.78
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.76
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.76
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.76
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.75
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.75
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.75
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.75
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.73
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.73
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.72
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.72
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.72
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.7
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.7
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.7
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.7
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.7
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.69
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.69
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.69
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.69
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.69
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.68
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.68
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.67
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.66
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.66
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.64
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.64
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.63
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.6
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.6
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.59
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.59
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.59
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.58
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.58
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.58
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.58
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.57
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.57
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.57
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.57
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.57
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.57
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.57
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.56
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.56
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.55
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.55
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.55
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.55
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.55
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.54
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.54
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.54
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.53
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.53
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.52
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.51
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.48
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.48
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.47
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.47
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.46
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.46
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.45
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.45
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.44
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.42
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.42
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.42
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.41
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.41
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.4
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.4
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.39
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.37
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.36
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.36
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.35
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.35
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.35
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.34
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.34
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.33
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.32
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.32
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.31
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.31
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.3
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.27
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.26
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.25
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.23
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.23
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.22
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.21
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.18
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.18
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.18
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.15
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.14
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.11
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.11
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.39
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.1
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.09
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.09
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.08
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.08
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.06
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.06
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.05
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.31
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.04
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.03
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.03
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.02
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.02
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.0
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.25
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.98
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.98
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.98
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.97
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.95
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.95
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.94
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.17
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.16
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.13
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.89
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.88
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.88
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.87
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.87
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.86
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.81
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.81
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	97.8
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.77
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.75
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.74
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.64
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.61
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.59
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.45
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.34
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.64
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.64
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.52
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.3
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.22
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.18
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.17
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.86
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.43
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.11
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.86
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	90.31
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.6
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	88.37
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	87.55
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	87.46
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	86.94
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	85.35
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	85.19
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	85.11
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	84.04
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	83.23
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	83.19
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	82.4
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	81.81
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	81.69
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	80.41
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	80.04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=1.2e-32  Score=224.84  Aligned_cols=144  Identities=31%  Similarity=0.688  Sum_probs=115.8

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT   80 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~   80 (348)
                      |.++++|.|+.|++.|.+...|..|++.|++        ..+|.|+.|++.|.+...|..|++.|+++.++       .|
T Consensus        16 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~-------~C   80 (190)
T 2i13_A           16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTG--------EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY-------KC   80 (190)
T ss_dssp             ---------------CCSSHHHHHGGGCC-----------CCEECTTTCCEESSHHHHHHHHHHHHCCCCE-------EC
T ss_pred             cCCCCCCcCCCCccccCCHHHHHHHHHHcCC--------CCCccCCCcCchhCCHHHHHHHHHhcCCCCCc-------cC
Confidence            4678999999999999999999999888776        78999999999999999999999999987554       46


Q ss_pred             ccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccccccc
Q psy4065          81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF  160 (348)
Q Consensus        81 ~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f  160 (348)
                      ..|+..|.....|..|++.++..         ++|.|..|++.|.+...|..|++.|++        +++|.|++|++.|
T Consensus        81 ~~C~~~f~~~~~l~~H~~~h~~~---------~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f  143 (190)
T 2i13_A           81 PECGKSFSQRANLRAHQRTHTGE---------KPYACPECGKSFSQLAHLRAHQRTHTG--------EKPYKCPECGKSF  143 (190)
T ss_dssp             TTTCCEESCHHHHHHHHHHHHTC---------CCEECTTTCCEESSHHHHHHHHHHHHC--------CCCEECTTTCCEE
T ss_pred             cccCCccCCHHHHHHHHHhcCCC---------CCCcCCCCCCccCCHHHHHHHHHHhCC--------CCCeECCCCCccc
Confidence            69999999999999998876543         789999999999999999999999987        7899999999999


Q ss_pred             CCHHHHHHHHHHhhhh
Q psy4065         161 TRREHLRRHQQIHARE  176 (348)
Q Consensus       161 ~~~~~L~~H~~~h~~~  176 (348)
                      .+...|..|+++|+++
T Consensus       144 ~~~~~L~~H~~~H~~~  159 (190)
T 2i13_A          144 SREDNLHTHQRTHTGE  159 (190)
T ss_dssp             SCHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHhcCCC
Confidence            9999999999999664

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.95  E-value=2.5e-28  Score=199.07  Aligned_cols=143  Identities=26%  Similarity=0.532  Sum_probs=126.2

Q ss_pred             CCCcccc--cccccccCChHHHHHHHHHhcCCCCCCCCCCCCccc--cccccccCCHHHHHHHHHHhhhhhhhccccchh
Q psy4065           3 VVRPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC--SVCGKTFTRREHLRRHQQIHARELLQSSMDMSA   78 (348)
Q Consensus         3 ~~~~y~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~   78 (348)
                      ..++|.|  +.|++.|.+...|..|++.|++        .++|.|  ..|++.|.+...|..|++.|.++.+       +
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~--------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-------~   73 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTG--------EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN-------F   73 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHC--------CCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCC-------E
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCC--------CCCccCCCCCCChhhCCHHHHHHHHHHccCCCc-------e
Confidence            5789999  6899999999999999999887        789999  8899999999999999999988754       4


Q ss_pred             hcc--cccccCCCcchhhhhhhhhhhhhhccCCCcccCccc--CcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065          79 LTG--LAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus        79 ~~~--~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      .|.  .|+..|.....|..|++..+..       ..++|.|  ..|++.|.+...|..|++.|++        +++|.|+
T Consensus        74 ~C~~~~C~~~f~~~~~l~~H~~~~h~~-------~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~  138 (190)
T 1tf6_A           74 TCDSDGCDLRFTTKANMKKHFNRFHNI-------KICVYVCHFENCGKAFKKHNQLKVHQFSHTQ--------QLPYECP  138 (190)
T ss_dssp             ECCSSSCCCEESCHHHHHHHHHTTSST-------TTSCCEECSSSSCEECSSHHHHHHHHGGGSS--------SCSSBCC
T ss_pred             eCCCCCCCCccCCHHHHHHHHHHhcCC-------CcceeeCCCCCCccccCCHHHHHHHHHHhCC--------CCCccCC
Confidence            566  8999999999999998655521       1278999  8899999999999999988877        7899998


Q ss_pred             c--cccccCCHHHHHHHHHHhhh
Q psy4065         155 V--CGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       155 ~--C~~~f~~~~~L~~H~~~h~~  175 (348)
                      +  |++.|.+...|..|+++|++
T Consensus       139 ~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          139 HEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CCCCCchhcCHHHHHHHHHHhCC
Confidence            8  99999999999999988743

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=1.2e-27  Score=194.97  Aligned_cols=146  Identities=31%  Similarity=0.688  Sum_probs=128.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT   80 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~   80 (348)
                      |.++++|+|+.|++.|.+...|..|++.|++        ..+|.|++|++.|.+...|..|++.|+++.++.       |
T Consensus        44 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-------C  108 (190)
T 2i13_A           44 HTGEKPYKCPECGKSFSDKKDLTRHQRTHTG--------EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYA-------C  108 (190)
T ss_dssp             C---CCEECTTTCCEESSHHHHHHHHHHHHC--------CCCEECTTTCCEESCHHHHHHHHHHHHTCCCEE-------C
T ss_pred             cCCCCCccCCCcCchhCCHHHHHHHHHhcCC--------CCCccCcccCCccCCHHHHHHHHHhcCCCCCCc-------C
Confidence            5678999999999999999999999999987        789999999999999999999999999876544       5


Q ss_pred             ccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccccccc
Q psy4065          81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF  160 (348)
Q Consensus        81 ~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f  160 (348)
                      ..|+..|.....|..|++.+...         ++|.|..|++.|.+...|..|++.|++        +++|.|++|++.|
T Consensus       109 ~~C~~~f~~~~~l~~H~~~h~~~---------~~~~C~~C~~~f~~~~~L~~H~~~H~~--------~~~~~C~~C~~~f  171 (190)
T 2i13_A          109 PECGKSFSQLAHLRAHQRTHTGE---------KPYKCPECGKSFSREDNLHTHQRTHTG--------EKPYKCPECGKSF  171 (190)
T ss_dssp             TTTCCEESSHHHHHHHHHHHHCC---------CCEECTTTCCEESCHHHHHHHHHHHHC--------CCCEECTTTCCEE
T ss_pred             CCCCCccCCHHHHHHHHHHhCCC---------CCeECCCCCcccCCHHHHHHHHHhcCC--------CCCeECCCCCCcc
Confidence            69999999999999998776543         789999999999999999999999987        7899999999999


Q ss_pred             CCHHHHHHHHHHhhhhcc
Q psy4065         161 TRREHLRRHQQIHARELL  178 (348)
Q Consensus       161 ~~~~~L~~H~~~h~~~~~  178 (348)
                      .+...|..|+++|+++.+
T Consensus       172 ~~~~~L~~H~~~H~~~k~  189 (190)
T 2i13_A          172 SRRDALNVHQRTHTGKKT  189 (190)
T ss_dssp             SSHHHHHHHHTTC-----
T ss_pred             CCHHHHHHHHHhcCCCCC
Confidence            999999999999998764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=1.2e-25  Score=176.96  Aligned_cols=115  Identities=30%  Similarity=0.555  Sum_probs=97.7

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc-----ccccCCHHHHHHHHHHhhhhhhhccccchh
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC-----GKTFTRREHLRRHQQIHARELLQSSMDMSA   78 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C-----~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~   78 (348)
                      |.+|+|+.|++.|.+...|..|++.+|.-     .+.++|.|.+|     ++.|.+...|..|++.|.++          
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h-----~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~----------   65 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIH-----GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE----------   65 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSS-----SCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC----------
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccC-----CCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCC----------
Confidence            56899999999999999999998853210     04678888763     49999999999999999887          


Q ss_pred             hcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc-
Q psy4065          79 LTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV-  155 (348)
Q Consensus        79 ~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~-  155 (348)
                                                        ++|.|.+  |++.|.+...|..|++.|++        .++|.|++ 
T Consensus        66 ----------------------------------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~  103 (155)
T 2gli_A           66 ----------------------------------KPHKCTFEGCRKSYSRLENLKTHLRSHTG--------EKPYMCEHE  103 (155)
T ss_dssp             ----------------------------------CCCCCCSTTCCCCCSSHHHHHHHHHHTTT--------CCCEECCST
T ss_pred             ----------------------------------CCccCCCCCCCCcccCHHHHHHHHHHcCC--------CCCeeCCCC
Confidence                                              7899985  99999999999999988876        78999998 


Q ss_pred             -cccccCCHHHHHHHH-HHhhh
Q psy4065         156 -CGKTFTRREHLRRHQ-QIHAR  175 (348)
Q Consensus       156 -C~~~f~~~~~L~~H~-~~h~~  175 (348)
                       |++.|.+...|..|+ +.|.+
T Consensus       104 ~C~~~f~~~~~L~~H~~~~H~~  125 (155)
T 2gli_A          104 GCSKAFSNASDRAKHQNRTHSN  125 (155)
T ss_dssp             TCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCCCccCCHHHHHHHHHHhcCC
Confidence             999999999999998 66644

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.90  E-value=1.8e-23  Score=156.82  Aligned_cols=113  Identities=38%  Similarity=0.879  Sum_probs=106.0

Q ss_pred             CCCCCcccccc--cccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc--ccccccCCHHHHHHHHHHhhhhhhhccccc
Q psy4065           1 IDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRRHQQIHARELLQSSMDM   76 (348)
Q Consensus         1 ~~~~~~y~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~   76 (348)
                      .+++++|.|.+  |++.|.+...|..|++.|++        ..+|.|.  .|++.|.+...|..|++.|+++        
T Consensus         1 a~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------   64 (119)
T 2jp9_A            1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTG--------EKPYQCDFKDCERRFSRSDQLKRHQRRHTGV--------   64 (119)
T ss_dssp             CCSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHT--------TCCEECCSTTCCCEESSHHHHHHHHHHHHCC--------
T ss_pred             CCCCeeeeCCCCCCcchhCCHHHHHHHHHhhCC--------CCCccCCCCCCcCccCCHHHHHHHHHHcCCC--------
Confidence            36789999997  99999999999999998886        7899999  6999999999999999999886        


Q ss_pred             hhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccc--c
Q psy4065          77 SALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC--S  154 (348)
Q Consensus        77 ~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C--~  154 (348)
                                                          ++|.|.+|++.|.+...|..|++.|++        +++|.|  +
T Consensus        65 ------------------------------------~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~  100 (119)
T 2jp9_A           65 ------------------------------------KPFQCKTCQRKFSRSDHLKTHTRTHTG--------EKPFSCRWP  100 (119)
T ss_dssp             ------------------------------------CCEECTTTCCEESCHHHHHHHHHHHHT--------CCCEECCST
T ss_pred             ------------------------------------CCccCCccCchhCCHHHHHHHHHHhcC--------CCCeeCCCC
Confidence                                                789999999999999999999999987        789999  8


Q ss_pred             ccccccCCHHHHHHHHHHh
Q psy4065         155 VCGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       155 ~C~~~f~~~~~L~~H~~~h  173 (348)
                      .|++.|.+...|..|+++|
T Consensus       101 ~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A          101 SCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             TCCCEESSHHHHHHHHHTC
T ss_pred             CCccccCCHHHHHHHHhcC
Confidence            9999999999999999876

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=2.4e-23  Score=157.38  Aligned_cols=118  Identities=28%  Similarity=0.609  Sum_probs=105.2

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcc
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTG   81 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~   81 (348)
                      +++++|+|++|++.|.+...|..|++.|++        .++|.|.+|++.|.+...|..|++.|+..             
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-------------   61 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTG--------EKPFECPKCGKCYFRKENLLEHEARNCMN-------------   61 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSS--------CCSCBCTTTCCBCSSHHHHHHHHHHCCCC-------------
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCC--------CCCeECCCCCchhcCHHHHHHHHhhhhcC-------------
Confidence            578999999999999999999999999886        78999999999999999999999875321             


Q ss_pred             cccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccC
Q psy4065          82 LAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT  161 (348)
Q Consensus        82 ~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~  161 (348)
                                                  ...++|.|.+|++.|.+...|..|++.|++        +++|.|++|++.|.
T Consensus        62 ----------------------------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~  105 (124)
T 2dlq_A           62 ----------------------------RSEQVFTCSVCQETFRRRMELRLHMVSHTG--------EMPYKCSSCSQQFM  105 (124)
T ss_dssp             ----------------------------SCCCCEECSSSCCEESSHHHHHHHHHHHSS--------SCSEECSSSCCEES
T ss_pred             ----------------------------CCCCCeECCCCCCccCCHHHHHHHHHHcCC--------CCCccCCCccchhC
Confidence                                        001789999999999999999999999987        78999999999999


Q ss_pred             CHHHHHHHHHH-hhhh
Q psy4065         162 RREHLRRHQQI-HARE  176 (348)
Q Consensus       162 ~~~~L~~H~~~-h~~~  176 (348)
                      +...|..|++. |.++
T Consensus       106 ~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A          106 QKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SHHHHHHHHHHTSSCS
T ss_pred             CHHHHHHHHHHHCCCC
Confidence            99999999975 5443

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=8.3e-24  Score=160.81  Aligned_cols=110  Identities=27%  Similarity=0.508  Sum_probs=98.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT   80 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~   80 (348)
                      |+|+++|+|.+|++.|.+...|..|++.|.+        +++|.|.+|++.|.+...|..|+++|.++            
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C~k~F~~~~~L~~H~~~H~~~------------   76 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSW--------EKKYPCRYCEKVFPLAEYRTKHEIHHTGE------------   76 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHHHHHC--------CSCEECSSSSCEESSHHHHHHHHHHHHTC------------
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHHHcCC--------CCCeeCCccCeecccccchhhhccccCCC------------
Confidence            5789999999999999999999999998876        78999999999999999999999999887            


Q ss_pred             ccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccccccc
Q psy4065          81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF  160 (348)
Q Consensus        81 ~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f  160 (348)
                                                      ++|.|.+|++.|.+...|..|++.||+..+.  ...++|+|.+|+..|
T Consensus        77 --------------------------------k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~--~~~k~~~C~~C~k~~  122 (133)
T 2lt7_A           77 --------------------------------RRYQCLACGKSFINYQFMSSHIKSVHSQDPS--GDSKLYRLHPCRSLQ  122 (133)
T ss_dssp             --------------------------------CCEEESSSCCEESSHHHHHHHHHHHTCCCTT--SSSCCEEECCCCSSC
T ss_pred             --------------------------------ccccCCCCCCCcCCHHHHHHHhHHhcCCCCC--CCCCCeecCCCCchh
Confidence                                            8999999999999999999999999973321  134689999999988


Q ss_pred             CCHH
Q psy4065         161 TRRE  164 (348)
Q Consensus       161 ~~~~  164 (348)
                      ....
T Consensus       123 ~~~~  126 (133)
T 2lt7_A          123 IRQY  126 (133)
T ss_dssp             CCCC
T ss_pred             hhcc
Confidence            6543

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=6.5e-23  Score=154.92  Aligned_cols=90  Identities=36%  Similarity=0.704  Sum_probs=80.5

Q ss_pred             CCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCccc
Q psy4065          38 AEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQC  117 (348)
Q Consensus        38 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C  117 (348)
                      .+..+|.|++|++.|.+...|..|++.|.++                                            ++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------------------------------------~~~~C   38 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGE--------------------------------------------KPFEC   38 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSC--------------------------------------------CSCBC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCC--------------------------------------------CCeEC
Confidence            4578999999999999999999999999886                                            78999


Q ss_pred             CcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         118 DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       118 ~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ..|++.|.+...|..|+..++.     ....++|.|.+|++.|.+...|..|+++|+++
T Consensus        39 ~~C~~~f~~~~~l~~H~~~~~~-----~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (124)
T 2dlq_A           39 PKCGKCYFRKENLLEHEARNCM-----NRSEQVFTCSVCQETFRRRMELRLHMVSHTGE   92 (124)
T ss_dssp             TTTCCBCSSHHHHHHHHHHCCC-----CSCCCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             CCCCchhcCHHHHHHHHhhhhc-----CCCCCCeECCCCCCccCCHHHHHHHHHHcCCC
Confidence            9999999999999999987642     12478999999999999999999999998654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.88  E-value=3.4e-23  Score=168.58  Aligned_cols=143  Identities=21%  Similarity=0.409  Sum_probs=121.7

Q ss_pred             CCCCCcccc--cccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc--ccccccCCHHHHHHHHHHhhhhhhhccccc
Q psy4065           1 IDVVRPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRRHQQIHARELLQSSMDM   76 (348)
Q Consensus         1 ~~~~~~y~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~   76 (348)
                      |.++++|.|  ..|++.|.+...|..|++.|++        +.+|.|.  .|++.|.+...|..|++.++...     ..
T Consensus        37 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~-----~~  103 (190)
T 1tf6_A           37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG--------EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK-----IC  103 (190)
T ss_dssp             HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTT--------CCCEECCSSSCCCEESCHHHHHHHHHTTSSTT-----TS
T ss_pred             cCCCCCccCCCCCCChhhCCHHHHHHHHHHccC--------CCceeCCCCCCCCccCCHHHHHHHHHHhcCCC-----cc
Confidence            457899999  8899999999999999988876        7899999  89999999999999995554211     12


Q ss_pred             hhhc--ccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcc
Q psy4065          77 SALT--GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFS  152 (348)
Q Consensus        77 ~~~~--~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~  152 (348)
                      .+.|  ..|+..|.....|..|++.+..       .  ++|.|..  |++.|.+...|..|++.|++           |.
T Consensus       104 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~-------~--~~~~C~~~~C~k~F~~~~~L~~H~~~H~~-----------~~  163 (190)
T 1tf6_A          104 VYVCHFENCGKAFKKHNQLKVHQFSHTQ-------Q--LPYECPHEGCDKRFSLPSRLKRHEKVHAG-----------YP  163 (190)
T ss_dssp             CCEECSSSSCEECSSHHHHHHHHGGGSS-------S--CSSBCCSSSCCCBCSSHHHHHHHHTSSCS-----------CC
T ss_pred             eeeCCCCCCccccCCHHHHHHHHHHhCC-------C--CCccCCCCCCCchhcCHHHHHHHHHHhCC-----------Cc
Confidence            3556  7899999999999999765443       2  8999988  99999999999999976542           99


Q ss_pred             ccc---cccccCCHHHHHHHHHHhhhh
Q psy4065         153 CSV---CGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       153 C~~---C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      |.+   |++.|.+...|..|+++|+++
T Consensus       164 C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          164 CKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             CCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            999   999999999999999999864

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=7.8e-23  Score=160.82  Aligned_cols=128  Identities=26%  Similarity=0.512  Sum_probs=110.2

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcCCCCC-CCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhc
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPP-EGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT   80 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~-~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~   80 (348)
                      ...++|.|..|++.|.+...|..|++.+|..... .......|.|.+|++.|.+...|..|++.|.++            
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~------------   88 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE------------   88 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCC------------
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCC------------
Confidence            3567899999999999999999999986652211 001112389999999999999999999999887            


Q ss_pred             ccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc--c
Q psy4065          81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--C  156 (348)
Q Consensus        81 ~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~--C  156 (348)
                                                      ++|.|.+  |++.|.+...|..|++.|++        +++|.|.+  |
T Consensus        89 --------------------------------~~~~C~~~~C~~~f~~~~~L~~H~~~h~~--------~~~~~C~~~~C  128 (155)
T 2rpc_A           89 --------------------------------KPFPCPFPGCGKIFARSENLKIHKRTHTG--------EKPFKCEFEGC  128 (155)
T ss_dssp             --------------------------------CSEECSCTTTCCEESCHHHHHHHHTTTCS--------SCSBCCSSTTC
T ss_pred             --------------------------------CcccCCcCCCCCccCCHHHHHHHHHhhCC--------CCCccCCCCCC
Confidence                                            7899998  99999999999999988876        78999998  9


Q ss_pred             ccccCCHHHHHHHHHHhhhhccccc
Q psy4065         157 GKTFTRREHLRRHQQIHARELLQSS  181 (348)
Q Consensus       157 ~~~f~~~~~L~~H~~~h~~~~~~~~  181 (348)
                      ++.|.+...|..|+++|+++.++.+
T Consensus       129 ~k~f~~~~~L~~H~~~H~~~k~~~c  153 (155)
T 2rpc_A          129 DRRFANSSDRKKHMHVHTSDKSGPS  153 (155)
T ss_dssp             CCCBSSHHHHHHSSTTTTSCCCSCS
T ss_pred             CCccCCHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999877655

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=6.4e-23  Score=155.01  Aligned_cols=115  Identities=29%  Similarity=0.636  Sum_probs=101.3

Q ss_pred             CCCccccc--ccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhc
Q psy4065           3 VVRPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT   80 (348)
Q Consensus         3 ~~~~y~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~   80 (348)
                      .+++|+|+  .|++.|.+...|..|++.| +        ..+|.|.+|++.|.+...|..|++.|.++            
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~------------   60 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-G--------PRVHVCAECGKAFVESSKLKRHQLVHTGE------------   60 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-S--------CCCEECTTTCCEESSHHHHHHHGGGTSCC------------
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-C--------CCCeECCCCCchhCCHHHHHHHHHHcCCC------------
Confidence            57899999  8999999999999998876 4        68899999999999999999999998876            


Q ss_pred             ccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc--c
Q psy4065          81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--C  156 (348)
Q Consensus        81 ~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~--C  156 (348)
                                                      ++|.|.+  |++.|.+...|..|++.|++        .++|.|++  |
T Consensus        61 --------------------------------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~~C  100 (124)
T 1ubd_C           61 --------------------------------KPFQCTFEGCGKRFSLDFNLRTHVRIHTG--------DRPYVCPFDGC  100 (124)
T ss_dssp             --------------------------------CCEECCSTTCCCEESCHHHHHHHHHHHHC--------CCCCCCCSTTC
T ss_pred             --------------------------------CCeeCCCCCCcCccCCHHHHHHHHHHhCC--------CCceECCCCCC
Confidence                                            7899986  99999999999999999987        78999964  9


Q ss_pred             ccccCCHHHHHHHHHHhhhhcc
Q psy4065         157 GKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       157 ~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      ++.|.+...|..|+++|+++..
T Consensus       101 ~~~f~~~~~L~~H~~~H~~~k~  122 (124)
T 1ubd_C          101 NKKFAQSTNLKSHILTHAKAKN  122 (124)
T ss_dssp             CCCCSSTTTTHHHHHHHC----
T ss_pred             CCccCCHHHHHHHHHHHccccc
Confidence            9999999999999999988753

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=2.5e-21  Score=145.08  Aligned_cols=86  Identities=40%  Similarity=0.933  Sum_probs=80.4

Q ss_pred             CCCCccccc--cccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcc
Q psy4065          39 EAKPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQ  116 (348)
Q Consensus        39 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~  116 (348)
                      ++++|.|.+  |++.|.+...|..|++.|.++                                            ++|.
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------------------------------------------~~~~   38 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE--------------------------------------------KPYQ   38 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTT--------------------------------------------CCEE
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCC--------------------------------------------CCcc
Confidence            478999998  999999999999999999887                                            7899


Q ss_pred             cC--cchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         117 CD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       117 C~--~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      |.  .|++.|.+...|..|++.|++        .++|.|.+|++.|.+...|..|+++|+++
T Consensus        39 C~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (119)
T 2jp9_A           39 CDFKDCERRFSRSDQLKRHQRRHTG--------VKPFQCKTCQRKFSRSDHLKTHTRTHTGE   92 (119)
T ss_dssp             CCSTTCCCEESSHHHHHHHHHHHHC--------CCCEECTTTCCEESCHHHHHHHHHHHHTC
T ss_pred             CCCCCCcCccCCHHHHHHHHHHcCC--------CCCccCCccCchhCCHHHHHHHHHHhcCC
Confidence            99  799999999999999999887        78999999999999999999999998764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=1.9e-21  Score=152.81  Aligned_cols=116  Identities=29%  Similarity=0.653  Sum_probs=104.0

Q ss_pred             CCCCCccccccc-----ccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc--cccccCCHHHHHHHHHHhhhhhhhcc
Q psy4065           1 IDVVRPFQCDVC-----NQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARELLQSS   73 (348)
Q Consensus         1 ~~~~~~y~C~~C-----~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~   73 (348)
                      |.++++|.|.+|     ++.|.+...|..|++.|++        ..+|.|++  |++.|.+...|..|++.|.++     
T Consensus        29 h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----   95 (155)
T 2gli_A           29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG--------EKPHKCTFEGCRKSYSRLENLKTHLRSHTGE-----   95 (155)
T ss_dssp             SSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHC--------CCCCCCCSTTCCCCCSSHHHHHHHHHHTTTC-----
T ss_pred             CCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCC--------CCCccCCCCCCCCcccCHHHHHHHHHHcCCC-----
Confidence            567899998753     4999999999999999987        78999996  999999999999999999886     


Q ss_pred             ccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCc
Q psy4065          74 MDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPF  151 (348)
Q Consensus        74 ~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~  151 (348)
                                                             ++|.|.+  |++.|.+...|..|+...|.       +.++|
T Consensus        96 ---------------------------------------~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------~~~~~  129 (155)
T 2gli_A           96 ---------------------------------------KPYMCEHEGCSKAFSNASDRAKHQNRTHS-------NEKPY  129 (155)
T ss_dssp             ---------------------------------------CCEECCSTTCCCEESSSSTTHHHHHHTTC-------SCCCE
T ss_pred             ---------------------------------------CCeeCCCCCCCCccCCHHHHHHHHHHhcC-------CCCCe
Confidence                                                   7899998  99999999999999944443       37899


Q ss_pred             cccc--cccccCCHHHHHHHHHHhhh
Q psy4065         152 SCSV--CGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       152 ~C~~--C~~~f~~~~~L~~H~~~h~~  175 (348)
                      .|.+  |++.|.+...|..|+++|+|
T Consensus       130 ~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          130 VCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             ECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             eCCCCCCccccCCHHHHHHHHHhhcC
Confidence            9999  99999999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.82  E-value=4.6e-21  Score=145.61  Aligned_cols=87  Identities=24%  Similarity=0.532  Sum_probs=82.2

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccC
Q psy4065          39 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCD  118 (348)
Q Consensus        39 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~  118 (348)
                      ++++|.|.+|++.|.+...|..|+++|.++                                            ++|.|.
T Consensus        19 Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~--------------------------------------------k~~~C~   54 (133)
T 2lt7_A           19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWE--------------------------------------------KKYPCR   54 (133)
T ss_dssp             TEEEEEETTTCCEESCHHHHHHHHHHHHCC--------------------------------------------SCEECS
T ss_pred             CCcCeECCCCCCCcCCHHHHHHHHHHcCCC--------------------------------------------CCeeCC
Confidence            578999999999999999999999999887                                            899999


Q ss_pred             cchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         119 VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       119 ~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      +|++.|.+...|..|++.|.+        +++|.|++|++.|.+...|..|+++|+++.
T Consensus        55 ~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~  105 (133)
T 2lt7_A           55 YCEKVFPLAEYRTKHEIHHTG--------ERRYQCLACGKSFINYQFMSSHIKSVHSQD  105 (133)
T ss_dssp             SSSCEESSHHHHHHHHHHHHT--------CCCEEESSSCCEESSHHHHHHHHHHHTCCC
T ss_pred             ccCeecccccchhhhccccCC--------CccccCCCCCCCcCCHHHHHHHhHHhcCCC
Confidence            999999999999999998876        899999999999999999999999998763

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.82  E-value=6.7e-21  Score=143.81  Aligned_cols=85  Identities=34%  Similarity=0.722  Sum_probs=75.7

Q ss_pred             CCCCcccc--ccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcc
Q psy4065          39 EAKPFSCS--VCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQ  116 (348)
Q Consensus        39 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~  116 (348)
                      +.++|.|+  .|++.|.+...|..|++.| ++                                            ++|.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~--------------------------------------------~~~~   36 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GP--------------------------------------------RVHV   36 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SC--------------------------------------------CCEE
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CC--------------------------------------------CCeE
Confidence            35789999  8999999999999999887 43                                            7899


Q ss_pred             cCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065         117 CDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       117 C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      |..|++.|.+...|..|++.|++        .++|.|.+  |++.|.+...|..|+++|+++
T Consensus        37 C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   90 (124)
T 1ubd_C           37 CAECGKAFVESSKLKRHQLVHTG--------EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   90 (124)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTSC--------CCCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCC--------CCCeeCCCCCCcCccCCHHHHHHHHHHhCCC
Confidence            99999999999999999988876        78999987  999999999999999998664

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.78  E-value=9.4e-20  Score=143.11  Aligned_cols=94  Identities=29%  Similarity=0.449  Sum_probs=77.5

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhhh-hhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCccc
Q psy4065          39 EAKPFSCSVCGKTFTRREHLRRHQQIHAREL-LQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQC  117 (348)
Q Consensus        39 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C  117 (348)
                      ....|.|..|++.|.+...|..|++.+|... .....                                    ....|.|
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~------------------------------------~~~~~~C   65 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH------------------------------------VCYWEEC   65 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSC------------------------------------CCCBTTC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCc------------------------------------cccccCC
Confidence            4578999999999999999999999844431 10000                                    0034899


Q ss_pred             CcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065         118 DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       118 ~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ..|++.|.+...|..|++.|++        .++|.|.+  |++.|.+...|..|+++|+++
T Consensus        66 ~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  118 (155)
T 2rpc_A           66 PREGKSFKAKYKLVNHIRVHTG--------EKPFPCPFPGCGKIFARSENLKIHKRTHTGE  118 (155)
T ss_dssp             TTSSCCCSSHHHHHHHTHHHHC--------CCSEECSCTTTCCEESCHHHHHHHHTTTCSS
T ss_pred             CCcccccCCHHHHHHHHHhcCC--------CCcccCCcCCCCCccCCHHHHHHHHHhhCCC
Confidence            9999999999999999999987        78999998  999999999999999888553

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=9.4e-19  Score=128.09  Aligned_cols=89  Identities=37%  Similarity=0.811  Sum_probs=65.2

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccC
Q psy4065          39 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCD  118 (348)
Q Consensus        39 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~  118 (348)
                      ..++|.|.+|++.|.+...|..|++.|+++                                            ++|.|.
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------------------------------------~~~~C~   49 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDE--------------------------------------------RPYTCD   49 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCS--------------------------------------------CCCBCS
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCC--------------------------------------------CCcCCC
Confidence            456677777777777777777777777665                                            667777


Q ss_pred             cchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhccc
Q psy4065         119 VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQ  179 (348)
Q Consensus       119 ~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  179 (348)
                      +|++.|.+...|..|++.|++        .++|.|.+|++.|.+...|..|+++|.++.++
T Consensus        50 ~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  102 (106)
T 2ee8_A           50 ICHKAFRRQDHLRDHRYIHSK--------EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSP  102 (106)
T ss_dssp             SSCCBCSCHHHHHHHGGGSCC--------CCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCC
T ss_pred             CccchhCCHHHHHHHHHHhCC--------CCCeECCCcCCcccCHHHHHHHHHHhCCCCCC
Confidence            777777777777777766655        66777777777777777777777777776554

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=9.4e-19  Score=125.61  Aligned_cols=86  Identities=29%  Similarity=0.663  Sum_probs=72.5

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcc
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTG   81 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~   81 (348)
                      .+++||+|.+|++.|.+...|..|++.|++        ..+|.|.+|++.|.+...|..|++.|+++             
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------   62 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTG--------VKPYKCKTCDYAAADSSSLNKHLRIHSDE-------------   62 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCC--------CCSEECSSSCCEESSHHHHHHHHHHSCCC-------------
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCC--------CCCEeCCCCCCccCCHHHHHHHHHHhCCC-------------
Confidence            467888888888888888888888877765        67888888888888888888888888765             


Q ss_pred             cccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          82 LAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        82 ~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                     ++|.|.+|++.|.+...|..|++.|++
T Consensus        63 -------------------------------~~~~C~~C~~~f~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           63 -------------------------------RPFKCQICPYASRNSSQLTVHLRSHTG   89 (96)
T ss_dssp             -------------------------------CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             -------------------------------CCccCCCCCCccCCHHHHHHHHHHhcC
Confidence                                           778888888888888888888887776

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.75  E-value=2.7e-18  Score=125.60  Aligned_cols=86  Identities=33%  Similarity=0.849  Sum_probs=80.9

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcc
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTG   81 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~   81 (348)
                      ..+++|.|.+|++.|.+...|..|++.|++        ..+|.|.+|++.|.+...|..|++.|+++             
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------   71 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTD--------ERPYTCDICHKAFRRQDHLRDHRYIHSKE-------------   71 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCC--------SCCCBCSSSCCBCSCHHHHHHHGGGSCCC-------------
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCC--------CCCcCCCCccchhCCHHHHHHHHHHhCCC-------------
Confidence            457899999999999999999999999886        78999999999999999999999998876             


Q ss_pred             cccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          82 LAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        82 ~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                     ++|.|.+|++.|.+...|..|++.|++
T Consensus        72 -------------------------------~~~~C~~C~~~f~~~~~L~~H~~~H~~   98 (106)
T 2ee8_A           72 -------------------------------KPFKCQECGKGFCQSRTLAVHKTLHMQ   98 (106)
T ss_dssp             -------------------------------CTTSCSSSCCCCSSHHHHHHHHHHTTS
T ss_pred             -------------------------------CCeECCCcCCcccCHHHHHHHHHHhCC
Confidence                                           789999999999999999999998887

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.74  E-value=2.3e-18  Score=119.70  Aligned_cols=82  Identities=35%  Similarity=0.811  Sum_probs=75.2

Q ss_pred             CccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcch
Q psy4065          42 PFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCN  121 (348)
Q Consensus        42 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~  121 (348)
                      +|.|.+|++.|.+...|..|++.|.++                                            ++|.|..|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------------------------------------~~~~C~~C~   36 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDT--------------------------------------------RPYPCQYCG   36 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTC--------------------------------------------CCEECSSSC
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCC--------------------------------------------CCeeCCcCC
Confidence            588999999999999999999998876                                            789999999


Q ss_pred             hhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065         122 QGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       122 ~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      +.|.+...|..|++.|++        +++|.|.+|++.|.+...|..|+++|+|
T Consensus        37 ~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           37 KRFHQKSDMKKHTFIHTG--------EKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CEESSHHHHHHHHHHHHT--------CCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             hhhCCHHHHHHHHHHhcC--------CCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            999999999999998887        7899999999999999999999999864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.4e-18  Score=124.76  Aligned_cols=88  Identities=27%  Similarity=0.669  Sum_probs=82.1

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccC
Q psy4065          39 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCD  118 (348)
Q Consensus        39 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~  118 (348)
                      ..++|.|.+|++.|.+...|..|++.|+++                                            ++|.|.
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------------------------------------~~~~C~   40 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGV--------------------------------------------KPYKCK   40 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCCCC--------------------------------------------CSEECS
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcCCC--------------------------------------------CCEeCC
Confidence            578999999999999999999999988776                                            789999


Q ss_pred             cchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhcc
Q psy4065         119 VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       119 ~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      .|++.|.+...|..|++.|++        +++|.|.+|++.|.+...|..|+++|+++..
T Consensus        41 ~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           41 TCDYAAADSSSLNKHLRIHSD--------ERPFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             SSCCEESSHHHHHHHHHHSCC--------CCCEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CCCCccCCHHHHHHHHHHhCC--------CCCccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            999999999999999988876        7899999999999999999999999988753

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.74  E-value=3.3e-18  Score=118.90  Aligned_cols=82  Identities=30%  Similarity=0.833  Sum_probs=77.2

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccc
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEE   85 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~   85 (348)
                      ||+|.+|++.|.+...|..|++.|++        ..+|.|..|++.|.+...|..|++.|+++                 
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------   55 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSD--------TRPYPCQYCGKRFHQKSDMKKHTFIHTGE-----------------   55 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHT--------CCCEECSSSCCEESSHHHHHHHHHHHHTC-----------------
T ss_pred             CccCCCCcccccCchhHHHHHHHcCC--------CCCeeCCcCChhhCCHHHHHHHHHHhcCC-----------------
Confidence            69999999999999999999999886        78999999999999999999999999887                 


Q ss_pred             cCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          86 VFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        86 ~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                 ++|.|..|++.|.+...|..|++.|++
T Consensus        56 ---------------------------~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           56 ---------------------------KPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             ---------------------------CCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             ---------------------------CCCcCCCcchhhCChHHHHHHHHhhCC
Confidence                                       789999999999999999999988863

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=3.4e-18  Score=125.27  Aligned_cols=86  Identities=20%  Similarity=0.451  Sum_probs=54.8

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV  119 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~  119 (348)
                      +++|.|.+|++.|.....|..|++.|  .                                            ++|.|.+
T Consensus        14 ~~~~~C~~C~~~f~~~~~l~~H~~~H--~--------------------------------------------~~~~C~~   47 (107)
T 1wjp_A           14 KEVYQCRLCNAKLSSLLEQGSHERLC--R--------------------------------------------NAAVCPY   47 (107)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHHH--H--------------------------------------------HSBCCTT
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHC--C--------------------------------------------CCccCCC
Confidence            45666666666666666666666665  1                                            3466666


Q ss_pred             chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHH-Hhhhhcccc
Q psy4065         120 CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ-IHARELLQS  180 (348)
Q Consensus       120 C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~  180 (348)
                      |++.|.+...|..|+. |.+        +++|.|.+|++.|.+...|..|++ .|.++.++.
T Consensus        48 C~~~f~~~~~l~~H~~-H~~--------~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~  100 (107)
T 1wjp_A           48 CSLRFFSPELKQEHES-KCE--------YKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAP  100 (107)
T ss_dssp             TCCCBSSHHHHHHHHH-HCS--------TGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCccCCHHHHHHHHH-cCC--------CCCccCccccchhCCHHHHHHHHHHHcCCCCCCC
Confidence            6666666666666663 444        566666666666666666666665 565555443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=2.1e-18  Score=127.12  Aligned_cols=86  Identities=28%  Similarity=0.701  Sum_probs=66.6

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT   80 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~   80 (348)
                      |+++++|.| .|++.|.+...|..|++.|++        ..+|.|.+|++.|.+...|..|++.|+++            
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~------------   63 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLG--------LRPYGCGVCGKKFKMKHHLVGHMKIHTGI------------   63 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSC--------CCSEECTTTSCEESSSHHHHHHHTTTCCC------------
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCC--------CcCccCCCCCcccCCHHHHHHHHHHcCCC------------
Confidence            667788888 788888888888888777765        67788888888888888888888777665            


Q ss_pred             ccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        81 ~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                      ++|.|.+|++.|.+...|..|++.|+.
T Consensus        64 --------------------------------~~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           64 --------------------------------KPYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             --------------------------------CCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             --------------------------------CCeeCCCCcchhcCHHHHHHHHHHccc
Confidence                                            677777777777777777777766654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.73  E-value=4.6e-18  Score=120.42  Aligned_cols=85  Identities=35%  Similarity=0.824  Sum_probs=73.4

Q ss_pred             CCCccccc--ccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhc
Q psy4065           3 VVRPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT   80 (348)
Q Consensus         3 ~~~~y~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~   80 (348)
                      +++||.|+  .|++.|.+...|..|++.|++        ..+|.|..|++.|.+...|..|++.|+++            
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~------------   60 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTG--------QKPFQCRICMRNFSRSDHLTTHIRTHTGE------------   60 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHC--------CCCEECTTTCCEESCHHHHHHHHHHHHCC------------
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCC--------CCCccCCCCCcccCCHHHHHHHHHHcCCC------------
Confidence            46899998  599999999999999888876        77899999999999999999999988876            


Q ss_pred             ccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        81 ~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                      ++|.|..|++.|.+...|..|++.|++
T Consensus        61 --------------------------------~~~~C~~C~~~f~~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           61 --------------------------------KPFACDICGRKFARSDERKRHTKIHLR   87 (90)
T ss_dssp             --------------------------------CCEECTTTCCEESSHHHHHHHHGGGGC
T ss_pred             --------------------------------CCccCCCCCchhCCHHHHHHHHHHhcc
Confidence                                            789999999999999999999988776

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.73  E-value=4.6e-18  Score=120.42  Aligned_cols=86  Identities=37%  Similarity=0.951  Sum_probs=78.9

Q ss_pred             CCCcccc--ccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCccc
Q psy4065          40 AKPFSCS--VCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQC  117 (348)
Q Consensus        40 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C  117 (348)
                      +++|.|+  .|++.|.+...|..|++.|.++                                            ++|.|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------------------------------------------~~~~C   37 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ--------------------------------------------KPFQC   37 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCC--------------------------------------------CCEEC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCC--------------------------------------------CCccC
Confidence            5789998  5999999999999999999886                                            78999


Q ss_pred             CcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         118 DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       118 ~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      ..|++.|.+...|..|++.|++        .++|.|.+|++.|.+...|..|+++|+++.
T Consensus        38 ~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           38 RICMRNFSRSDHLTTHIRTHTG--------EKPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             TTTCCEESCHHHHHHHHHHHHC--------CCCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCCCcccCCHHHHHHHHHHcCC--------CCCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            9999999999999999999987        789999999999999999999999998763

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=5.9e-18  Score=121.15  Aligned_cols=53  Identities=36%  Similarity=0.857  Sum_probs=26.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHH
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ  171 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~  171 (348)
                      ++|.|..|++.|.+...|..|++.|++      ...++|.|.+|++.|.+...|..|++
T Consensus        34 ~~~~C~~C~~~f~~~~~l~~H~~~h~~------~~~~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           34 KPYSCPVCGLRFKRKDRMSYHVRSHDG------SVGKPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHHHHCC------CCCSSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHhcC------CCCCceECCCccchhCCHHHHHHHHH
Confidence            445555555555555555555554443      01145555555555555555555543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=2.6e-17  Score=117.76  Aligned_cols=88  Identities=33%  Similarity=0.733  Sum_probs=79.8

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcc
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTG   81 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~   81 (348)
                      .++++|+|.+|++.|.+...|..|++.|++        ..+|.|.+|++.|.+...|..|++.|+++.            
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~------------   62 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSG--------EKPYSCPVCGLRFKRKDRMSYHVRSHDGSV------------   62 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCS--------SCSEECSSSCCEESCHHHHHHHHHHHCCCC------------
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCC--------CCCCcCCCCCCccCCHHHHHHHHHHhcCCC------------
Confidence            578999999999999999999999998876        789999999999999999999999988741            


Q ss_pred             cccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          82 LAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        82 ~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                    .++|.|.+|++.|.+...|..|++..|.
T Consensus        63 ------------------------------~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           63 ------------------------------GKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             ------------------------------CSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             ------------------------------CCceECCCccchhCCHHHHHHHHHHhcC
Confidence                                          1689999999999999999999976665

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.7e-17  Score=122.22  Aligned_cols=86  Identities=36%  Similarity=0.777  Sum_probs=80.5

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccC
Q psy4065          39 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCD  118 (348)
Q Consensus        39 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~  118 (348)
                      ++++|.| .|++.|.+...|..|++.|.++                                            ++|.|.
T Consensus         7 ~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~--------------------------------------------~~~~C~   41 (110)
T 2csh_A            7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGL--------------------------------------------RPYGCG   41 (110)
T ss_dssp             CCCCEEC-TTSCEESSHHHHHHHHHHHSCC--------------------------------------------CSEECT
T ss_pred             CCCCEec-cCCCccCCHHHHHHHHHHcCCC--------------------------------------------cCccCC
Confidence            5789999 9999999999999999999876                                            789999


Q ss_pred             cchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         119 VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       119 ~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      +|++.|.+...|..|++.|++        .++|.|.+|++.|.+...|..|++.|+...
T Consensus        42 ~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~   92 (110)
T 2csh_A           42 VCGKKFKMKHHLVGHMKIHTG--------IKPYECNICAKRFMWRDSFHRHVTSCTKSY   92 (110)
T ss_dssp             TTSCEESSSHHHHHHHTTTCC--------CCCEECSSSCCEESCHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHHcCC--------CCCeeCCCCcchhcCHHHHHHHHHHccccc
Confidence            999999999999999988876        789999999999999999999999988763

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.68  E-value=1.3e-17  Score=117.51  Aligned_cols=83  Identities=31%  Similarity=0.711  Sum_probs=68.8

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccc
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLA   83 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c   83 (348)
                      ++||+|.+|++.|.+...|..|++.|++        +.+|.|..|++.|.+...|..|++.|++                
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C~k~f~~~~~L~~H~~~h~~----------------   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTG--------EKPFACDICGRKFARSDERKRHRDIQHI----------------   56 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC--------CCCEECTTTCCEESSHHHHHHHHHHHTH----------------
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCC--------CCCccCCCCCCccCCHHHHHHHHHHhCC----------------
Confidence            5788888888888888888888888776        6788888888888888888888888875                


Q ss_pred             cccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          84 EEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        84 ~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                   .+|.|..|++.|.+...|..|++.+|+
T Consensus        57 -----------------------------~~~~c~~C~~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           57 -----------------------------LPILEDKVEELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------CcchHHHHHHHHHHHhhhHHHHHHHHH
Confidence                                         367888888888888888888887775

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=7.9e-17  Score=117.94  Aligned_cols=92  Identities=18%  Similarity=0.374  Sum_probs=82.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT   80 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~   80 (348)
                      |+++++|+|.+|++.|.+...|..|++.|          .++|.|.+|++.|.....|..|++ |.++            
T Consensus        11 h~~~~~~~C~~C~~~f~~~~~l~~H~~~H----------~~~~~C~~C~~~f~~~~~l~~H~~-H~~~------------   67 (107)
T 1wjp_A           11 VENKEVYQCRLCNAKLSSLLEQGSHERLC----------RNAAVCPYCSLRFFSPELKQEHES-KCEY------------   67 (107)
T ss_dssp             CCCCCCCBCTTTCCBCSSHHHHHHHHHHH----------HHSBCCTTTCCCBSSHHHHHHHHH-HCST------------
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHC----------CCCccCCCCCCccCCHHHHHHHHH-cCCC------------
Confidence            67899999999999999999999998886          379999999999999999999996 7776            


Q ss_pred             ccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065          81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus        81 ~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                                                      ++|.|.+|++.|.....|..|++.+|.       .+++|.|.
T Consensus        68 --------------------------------~~~~C~~C~~~f~~~~~L~~H~~~~H~-------~~~~~~~~  102 (107)
T 1wjp_A           68 --------------------------------KKLTCLECMRTFKSSFSIWRHQVEVHN-------QNNMAPTS  102 (107)
T ss_dssp             --------------------------------GGGEEGGGTEECSSHHHHHHHHHHTSC-------CCCCCCCC
T ss_pred             --------------------------------CCccCccccchhCCHHHHHHHHHHHcC-------CCCCCCCC
Confidence                                            789999999999999999999985665       46777764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=9e-18  Score=124.72  Aligned_cols=98  Identities=18%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHH--hhhhhhhccccchhhcccccccCCCcchhhhhh
Q psy4065          20 EHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI--HARELLQSSMDMSALTGLAEEVFPTPLRLDENV   97 (348)
Q Consensus        20 ~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~   97 (348)
                      ..|..|++.|++        +++|.|..|++.|.+...|..|++.  |....                            
T Consensus         5 ~~l~~H~~~H~~--------~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~----------------------------   48 (115)
T 2dmi_A            5 SSGKLYGSIFTG--------ASKFRCKDCSAAYDTLVELTVHMNETGHYRDD----------------------------   48 (115)
T ss_dssp             CCCCCCCCCCCC--------CCSEEBSSSSCEESSHHHHHHHHHHTCCCBCS----------------------------
T ss_pred             hhhhhheeeeCC--------CCCEECCccCchhcCHHHHHHHHHHhCccccC----------------------------
Confidence            345556555544        6677777777777777777777775  32220                            


Q ss_pred             hhhhhhhhccCCCcccCcccCcchhhc--CCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065          98 RRWVACQRIEGIDVVRPFQCDVCNQGF--VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~C~~C~~~f--~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                                     ..+.|.+|++.|  .....|..|++.|.+        +++|.|.+|++.|.+...|..|++.|+.
T Consensus        49 ---------------~~~~C~~C~~~f~f~~~~~l~~H~~~H~~--------~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           49 ---------------NHETDNNNPKRWSKPRKRSLLEMEGKEDA--------QKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             ---------------CCCCCCCCCSCCSSCCCCCCCCCCCSCCC--------CSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             ---------------CCccCCCCCcccccccHHHHHHHhhccCC--------CcceECCCCCCccCCHHHHHHHHHHhCC
Confidence                           223477777666  666667777655554        5677777777777777777777766655


Q ss_pred             h
Q psy4065         176 E  176 (348)
Q Consensus       176 ~  176 (348)
                      .
T Consensus       106 ~  106 (115)
T 2dmi_A          106 Y  106 (115)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.67  E-value=2e-16  Score=114.22  Aligned_cols=85  Identities=35%  Similarity=0.831  Sum_probs=68.5

Q ss_pred             CCCCCccccc--cccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCc
Q psy4065          38 AEAKPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPF  115 (348)
Q Consensus        38 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~  115 (348)
                      ...+.|.|.+  |++.|.....|..|++.|.++                                            ++|
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------------------------------------------~~~   46 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGE--------------------------------------------KPY   46 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCC--------------------------------------------CCE
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCC--------------------------------------------CCe
Confidence            3456788886  888888888888888887765                                            678


Q ss_pred             ccC--cchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhh
Q psy4065         116 QCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       116 ~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~  174 (348)
                      .|.  .|++.|.+...|..|++.|++        +++|.|.+|++.|.+...|..|+++|.
T Consensus        47 ~C~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           47 KCTWEGCDWRFARSDELTRHYRKHTG--------AKPFQCGVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             ECCSSSCCCEESSHHHHHHHHHHHTS--------CCSCBCSSSCCBCSSHHHHHHHHHHHC
T ss_pred             eCCCCCCCCccCCHHHHHHHHHHhCC--------CCCeECCCCcCccCCHHHHHHHHHHhC
Confidence            885  588888888888888887776        678888888888888888888888875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.66  E-value=2.2e-16  Score=114.04  Aligned_cols=85  Identities=36%  Similarity=0.776  Sum_probs=78.6

Q ss_pred             CCCcccccc--cccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc--ccccccCCHHHHHHHHHHhhhhhhhccccchh
Q psy4065           3 VVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRRHQQIHARELLQSSMDMSA   78 (348)
Q Consensus         3 ~~~~y~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~   78 (348)
                      ..++|.|.+  |++.|.+...|..|++.|++        .++|.|+  .|++.|.+...|.+|++.|.++          
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~----------   73 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTG--------EKPYKCTWEGCDWRFARSDELTRHYRKHTGA----------   73 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSC--------CCCEECCSSSCCCEESSHHHHHHHHHHHTSC----------
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCC--------CCCeeCCCCCCCCccCCHHHHHHHHHHhCCC----------
Confidence            578999997  99999999999999998876        7899997  5999999999999999999887          


Q ss_pred             hcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          79 LTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        79 ~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                        ++|.|.+|++.|.+...|..|++.|.+
T Consensus        74 ----------------------------------~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           74 ----------------------------------KPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             ----------------------------------CSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             ----------------------------------CCeECCCCcCccCCHHHHHHHHHHhCC
Confidence                                              789999999999999999999988853

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.65  E-value=2.9e-17  Score=115.75  Aligned_cols=84  Identities=31%  Similarity=0.657  Sum_probs=78.5

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV  119 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~  119 (348)
                      +++|.|.+|++.|.+...|..|++.|.++                                            ++|.|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~--------------------------------------------~~~~C~~   36 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------------------------------------KPFACDI   36 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCC--------------------------------------------CCEECTT
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCC--------------------------------------------CCccCCC
Confidence            36899999999999999999999999887                                            7899999


Q ss_pred             chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         120 CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       120 C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      |++.|.+...|..|+..||+         .+|.|..|++.|.+...|..|++.+++.
T Consensus        37 C~k~f~~~~~L~~H~~~h~~---------~~~~c~~C~~~f~~~~~L~~H~~~~h~~   84 (88)
T 1llm_C           37 CGRKFARSDERKRHRDIQHI---------LPILEDKVEELLSKNYHLENEVARLKKL   84 (88)
T ss_dssp             TCCEESSHHHHHHHHHHHTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHhCC---------CcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            99999999999999999985         7899999999999999999999887764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=2.1e-18  Score=128.22  Aligned_cols=88  Identities=15%  Similarity=0.283  Sum_probs=78.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHH--hcCCCCCCCCCCCCcccccccccc--CCHHHHHHHHHHhhhhhhhccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKR--AHDLDPPEGAEAKPFSCSVCGKTF--TRREHLRRHQQIHARELLQSSMDM   76 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~--~h~~~~~~~~~~~~~~C~~C~~~f--~~~~~l~~H~~~h~~~~~~~~~~~   76 (348)
                      |.+++||+|.+|++.|.+...|..|++.  ++.       ....+.|.+|++.|  .....|..|++.|.++        
T Consensus        14 H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~-------~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~--------   78 (115)
T 2dmi_A           14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYR-------DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ--------   78 (115)
T ss_dssp             CCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCB-------CSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCC--------
T ss_pred             eCCCCCEECCccCchhcCHHHHHHHHHHhCccc-------cCCCccCCCCCcccccccHHHHHHHhhccCCC--------
Confidence            6789999999999999999999999887  443       33456699999998  8899999999988876        


Q ss_pred             hhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          77 SALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        77 ~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                          ++|.|.+|++.|.....|..|++.||.
T Consensus        79 ------------------------------------~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           79 ------------------------------------KVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             ------------------------------------SSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             ------------------------------------cceECCCCCCccCCHHHHHHHHHHhCC
Confidence                                                899999999999999999999999887

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.63  E-value=2.3e-16  Score=111.27  Aligned_cols=83  Identities=36%  Similarity=0.801  Sum_probs=76.1

Q ss_pred             CCCcccccc--cccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc--ccccccCCHHHHHHHHHHhhhhhhhccccchh
Q psy4065           3 VVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRRHQQIHARELLQSSMDMSA   78 (348)
Q Consensus         3 ~~~~y~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~   78 (348)
                      ..++|.|.+  |++.|.+...|..|++.|++        ..+|.|+  .|++.|.+...|..|++.|.++          
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~----------   63 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTG--------EKPYHCDWDGCGWKFARSDELTRHYRKHTGH----------   63 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTTSCS--------SCCEECCSTTTCCEESSHHHHHHHHHHHHCC----------
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHhcCC--------CCCcCCCCCCCCCccCCHHHHHHHHHHcCCC----------
Confidence            467999999  99999999999999888775        7899998  4999999999999999999887          


Q ss_pred             hcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHh
Q psy4065          79 LTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRA  137 (348)
Q Consensus        79 ~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~  137 (348)
                                                        ++|.|..|++.|.+...|..|++.|
T Consensus        64 ----------------------------------~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           64 ----------------------------------RPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             ----------------------------------CCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             ----------------------------------CCccCCCCCcccCCHHHHHHHHHhh
Confidence                                              7899999999999999999999766

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.63  E-value=1.3e-16  Score=102.52  Aligned_cols=58  Identities=33%  Similarity=0.739  Sum_probs=55.1

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      .||||+|.+|++.|.....|..|+++|.+        +++|.|..||+.|.+...|.+|+++|.++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~--------ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLG--------YRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHT--------CCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCC--------CcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            48999999999999999999999999876        89999999999999999999999999876

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.62  E-value=2.7e-16  Score=110.95  Aligned_cols=82  Identities=37%  Similarity=0.885  Sum_probs=76.7

Q ss_pred             CCCccccc--cccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCccc
Q psy4065          40 AKPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQC  117 (348)
Q Consensus        40 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C  117 (348)
                      ...|.|.+  |++.|.+...|..|++.|.++                                            ++|.|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------------------------------------------~~~~C   38 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGE--------------------------------------------KPYHC   38 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSS--------------------------------------------CCEEC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCC--------------------------------------------CCcCC
Confidence            56899999  999999999999999988876                                            78999


Q ss_pred             C--cchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHh
Q psy4065         118 D--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       118 ~--~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h  173 (348)
                      .  .|++.|.+...|..|++.|++        +++|.|++|++.|.+...|..|+++|
T Consensus        39 ~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           39 DWDGCGWKFARSDELTRHYRKHTG--------HRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CSTTTCCEESSHHHHHHHHHHHHC--------CCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCCCCCccCCHHHHHHHHHHcCC--------CCCccCCCCCcccCCHHHHHHHHHhh
Confidence            7  599999999999999999887        78999999999999999999999887

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.61  E-value=2.9e-16  Score=100.86  Aligned_cols=58  Identities=33%  Similarity=0.732  Sum_probs=54.5

Q ss_pred             ccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       112 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      ++||.|.+|++.|.....|..|++.|.+        ++||.|.+|++.|.+...|..|+++|.++.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~--------ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLG--------YRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHT--------CCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCC--------CcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            4899999999999999999999999877        899999999999999999999999998863

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.55  E-value=5.7e-15  Score=103.03  Aligned_cols=78  Identities=26%  Similarity=0.564  Sum_probs=71.7

Q ss_pred             Cccc--cccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc
Q psy4065          42 PFSC--SVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV  119 (348)
Q Consensus        42 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~  119 (348)
                      +|.|  ..|++.|.....|..|++.|.++                                            ++|.|..
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------------------------------------------~~~~C~~   36 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQ--------------------------------------------LPYECPH   36 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTT--------------------------------------------CCEECCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCC--------------------------------------------CCeeCCC
Confidence            5889  88999999999999999999887                                            7899988


Q ss_pred             --chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc---cccccCCHHHHHHHHHHhh
Q psy4065         120 --CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV---CGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       120 --C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~---C~~~f~~~~~L~~H~~~h~  174 (348)
                        |++.|.+...|..|++.|++           |.|..   |++.|.+...|..|+++|+
T Consensus        37 ~~C~~~f~~~~~l~~H~~~h~~-----------~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           37 EGCDKRFSLPSRLKRHEKVHAG-----------YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             TTCCCEESSHHHHHHHHHHHHS-----------EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCcCccCCHHHHHHHHHHhCC-----------CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence              99999999999999988763           99999   9999999999999999875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.54  E-value=9.2e-15  Score=101.95  Aligned_cols=78  Identities=24%  Similarity=0.592  Sum_probs=71.7

Q ss_pred             cccc--cccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc--cccccCCHHHHHHHHHHhhhhhhhccccchhhcc
Q psy4065           6 PFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTG   81 (348)
Q Consensus         6 ~y~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~   81 (348)
                      ||+|  +.|++.|.+...|..|++.|++        +++|.|++  |++.|.+...|.+|++.|++              
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------------   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQ--------QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--------------   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHT--------TCCEECCSTTCCCEESSHHHHHHHHHHHHS--------------
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCC--------CCCeeCCCCCCcCccCCHHHHHHHHHHhCC--------------
Confidence            7999  9999999999999999999886        78999999  99999999999999998754              


Q ss_pred             cccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc---chhhcCCHHHHHHHHHHhC
Q psy4065          82 LAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV---CNQGFVRKEHLVRHRKRAH  138 (348)
Q Consensus        82 ~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~---C~~~f~~~~~L~~H~~~~h  138 (348)
                                                       |.|..   |++.|.+...|..|++.||
T Consensus        59 ---------------------------------~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           59 ---------------------------------YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             ---------------------------------EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             ---------------------------------CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence                                             57888   9999999999999998875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.54  E-value=2.8e-15  Score=113.53  Aligned_cols=114  Identities=16%  Similarity=0.175  Sum_probs=86.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccC------CHHHHHHHHHHhhhhhhhccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT------RREHLRRHQQIHARELLQSSM   74 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~~~~   74 (348)
                      +.++|+|.|..++....  ..+..|.+.+.. .    ...+.+.|.+|...|.      ....|..|+ .|+++      
T Consensus         7 ~~~~k~~~~~~k~~~~~--~s~ee~~~~~~l-~----~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~------   72 (129)
T 2wbt_A            7 DSGSKKYLSNHKGIFIH--VTLEELKRYHQL-T----PEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAI------   72 (129)
T ss_dssp             CTTCCGGGGCSSCEEEE--CCHHHHHHHTTS-C----HHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHH------
T ss_pred             cccccccccccCCeeee--ecHHhhhccccC-C----hhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCC------
Confidence            46789998887665432  233444333221 0    0245688888887766      556676776 57666      


Q ss_pred             cchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065          75 DMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus        75 ~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                                                            ++|.|.+|++.|.....|..|++.| .         ++|.|.
T Consensus        73 --------------------------------------~~~~C~~C~k~f~~~~~l~~H~~~H-~---------~~~~C~  104 (129)
T 2wbt_A           73 --------------------------------------SQFVCPLCLMPFSSSVSLKQHIRYT-E---------HTKVCP  104 (129)
T ss_dssp             --------------------------------------CSEECTTTCCEESSHHHHHHHHHHT-C---------CCCBCT
T ss_pred             --------------------------------------CCeECCCCCcccCCHhHHHHHHHHC-C---------CCCCCC
Confidence                                                  8999999999999999999999887 4         689999


Q ss_pred             ccccccCCHHHHHHHHHHhhhh
Q psy4065         155 VCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       155 ~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +|++.|.+...|..|++.|++.
T Consensus       105 ~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          105 VCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCcccCCHHHHHHHHHHHCCc
Confidence            9999999999999999999875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=7.7e-15  Score=100.87  Aligned_cols=60  Identities=33%  Similarity=0.706  Sum_probs=54.3

Q ss_pred             CCCCcccccc--cccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065           2 DVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         2 ~~~~~y~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      +++++|.|..  |++.|.+...|..|++..|.       ..++|.|.+  |++.|.+...|.+|+++|+++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   66 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------HQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT   66 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGG-------SCCCEECSCTTTCCEESSHHHHHHHHHHHHTS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhC-------CCCCeECCCCCCcCccCCHHHHHHHHHHhCCC
Confidence            5789999997  99999999999999884443       378999999  999999999999999999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.1e-14  Score=100.17  Aligned_cols=72  Identities=28%  Similarity=0.671  Sum_probs=65.1

Q ss_pred             CCCCCccccc--cccccCCHHHHHHHHH-HhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccC
Q psy4065          38 AEAKPFSCSV--CGKTFTRREHLRRHQQ-IHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRP  114 (348)
Q Consensus        38 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~  114 (348)
                      .+.++|.|..  |++.|.+...|..|++ .|.++                                            ++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~--------------------------------------------~~   38 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ--------------------------------------------KS   38 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSC--------------------------------------------CC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCC--------------------------------------------CC
Confidence            3567899998  9999999999999999 57665                                            78


Q ss_pred             cccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccC
Q psy4065         115 FQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT  161 (348)
Q Consensus       115 ~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~  161 (348)
                      |.|.+  |++.|.+...|..|++.|++        +++|.|.+|++.|.
T Consensus        39 ~~C~~~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           39 FSCPEPACGKSFNFKKHLKEHMKLHSD--------TRDYICEFSGPSSG   79 (79)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHT--------SCCCSCCSSSCCCC
T ss_pred             eECCCCCCcCccCCHHHHHHHHHHhCC--------CCCeeCCCCCCCCC
Confidence            99999  99999999999999999987        78999999999984

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=2.3e-14  Score=100.16  Aligned_cols=61  Identities=41%  Similarity=0.715  Sum_probs=57.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCC---CCccccccccccCCHHHHHHHHHHhhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA---KPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~---~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      |++++||.|.+|++.|.+...|..|++.+|.       ..   .+|.|..|++.|.+...|..|++.|+++
T Consensus        10 H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~-------~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   73 (86)
T 1x6h_A           10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHD-------PNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP   73 (86)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTTC-------SSCCCCCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             ecCCCCCcCCCCCCccCCHHHHHHHHHHhcC-------CcCCCcceECCCCCChhCCHHHHHHHHHHccCC
Confidence            6789999999999999999999999998887       32   7899999999999999999999999998

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=3.9e-14  Score=95.40  Aligned_cols=60  Identities=33%  Similarity=0.718  Sum_probs=56.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      |.+++||+|.+|++.|.+...|..|++.|++        +++|.|.+|++.|.+...|.+|++.|+++
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~--------~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG--------EKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC--------SCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHhcCC--------CCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            6889999999999999999999999998876        78999999999999999999999999876

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=3.3e-14  Score=95.18  Aligned_cols=62  Identities=19%  Similarity=0.391  Sum_probs=57.8

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELL   70 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   70 (348)
                      |.++++|+|.+|++.|.+...|..|++.|++        +++|.|.+|++.|.+...|.+|++.|+++.+
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCT--------DRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCC--------SCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCC--------CCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            6789999999999999999999999988776        7899999999999999999999999998754

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=2.3e-14  Score=97.96  Aligned_cols=60  Identities=33%  Similarity=0.792  Sum_probs=56.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      +.++++|+|.+|++.|.+...|..|++.|++        .++|.|.+|++.|.....|.+|+++|+++
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   72 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTG--------EKPYKCDECGKAFIQRSHLIGHHRVHTGS   72 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC--------SCSEECSSSCCEESSHHHHHHHGGGSCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCC--------CcCeeCCCCCCccCCHHHHHHHHHHhCCC
Confidence            3578999999999999999999999988876        78999999999999999999999999987

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.46  E-value=6.6e-14  Score=94.82  Aligned_cols=62  Identities=32%  Similarity=0.756  Sum_probs=57.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELL   70 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   70 (348)
                      +.++++|+|..|++.|.+...|..|++.|++        +++|.|.+|++.|.+...|.+|++.|.++.+
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~--------~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTG--------EKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCC--------CCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCC--------CCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            4678999999999999999999999998876        7899999999999999999999999988743

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.46  E-value=6.7e-14  Score=89.54  Aligned_cols=57  Identities=23%  Similarity=0.449  Sum_probs=50.1

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   67 (348)
                      +++||+|.+|++.|.+...|..|++.|++        +++|.|++|++.|.....|..|++.|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTG--------EKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHC--------CCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCC--------CCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            47899999999999999999999999887        7899999999999999999999999874

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=5.1e-14  Score=100.84  Aligned_cols=64  Identities=19%  Similarity=0.296  Sum_probs=54.9

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHH-HHHhhhhh
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQIHAREL   69 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~   69 (348)
                      .+++||.|..|++.|.....|..|++..|..    ..++++|.|..||+.|.+...|.+| ++.|.++.
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~----~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgek   78 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPN----VVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE   78 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSS----CCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCC----CCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCC
Confidence            4789999999999999999999998764510    0036899999999999999999999 89999883

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=6e-14  Score=92.73  Aligned_cols=60  Identities=25%  Similarity=0.619  Sum_probs=55.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhc-CCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAH-DLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h-~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   67 (348)
                      |++++||+|..|++.|.+...|..|++.+| .       ++++|.|+.|++.|.+...|..|++.||+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~-------~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR-------NVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSS-------SCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCC-------CCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            568999999999999999999999999866 4       47899999999999999999999999886

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=3.2e-14  Score=99.41  Aligned_cols=73  Identities=26%  Similarity=0.525  Sum_probs=50.2

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCc
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV  119 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~  119 (348)
                      +++|.|.+|++.|.....|.+|++.|+....                                        ..++|.|.+
T Consensus        13 ~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~----------------------------------------~~~~~~C~~   52 (86)
T 1x6h_A           13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNF----------------------------------------VPAAFVCSK   52 (86)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHTTCSSC----------------------------------------CCCCEECSS
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHhcCCcC----------------------------------------CCcceECCC
Confidence            6677777777777777777777776665310                                        004677777


Q ss_pred             chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccccccc
Q psy4065         120 CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF  160 (348)
Q Consensus       120 C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f  160 (348)
                      |++.|.....|..|++.|++        ..++.|..|+..|
T Consensus        53 C~~~f~~~~~L~~H~~~h~~--------~~~~~~~~~~~~~   85 (86)
T 1x6h_A           53 CGKTFTRRNTMARHADNCAG--------PDGVEGENSGPSS   85 (86)
T ss_dssp             SCCEESCHHHHHHHHHHCCC--------CCSCCCCCCCCCC
T ss_pred             CCChhCCHHHHHHHHHHccC--------CCCcccCCCCCCC
Confidence            77777777777777777766        6677777777654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=8.9e-14  Score=99.72  Aligned_cols=72  Identities=17%  Similarity=0.332  Sum_probs=44.6

Q ss_pred             cCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccC-CHHHHHHHHHHhhh-hhhhccccchhhcccccccCCCcchh
Q psy4065          16 FVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT-RREHLRRHQQIHAR-ELLQSSMDMSALTGLAEEVFPTPLRL   93 (348)
Q Consensus        16 f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~~~~~~~~~~~~~~c~~~~~~~~~l   93 (348)
                      +.....+..|++.|.+        +++|.|.+|++.|. ....|.+|++.|++ +                         
T Consensus         6 ~~~~~~~~~h~~~h~~--------~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~-------------------------   52 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHE--------RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQ-------------------------   52 (98)
T ss_dssp             CCCCCSCSHHHHTTTT--------TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHH-------------------------
T ss_pred             CCCCCcHHHHHHHhcc--------CCCcCCCCCCCChhhhHHHHHHHHHHHcCCC-------------------------
Confidence            3444455566555543        56666666666666 66666666666665 4                         


Q ss_pred             hhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          94 DENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        94 ~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                         ++|.|.+|++.|.....|..|++.||+
T Consensus        53 -------------------~~~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A           53 -------------------DALKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             -------------------HHHSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             -------------------CCEECCCCCCccCCHHHHHHHHHHHcC
Confidence                               456666666666666666666666665

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.42  E-value=2.3e-13  Score=92.14  Aligned_cols=59  Identities=34%  Similarity=0.801  Sum_probs=55.4

Q ss_pred             ccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhcc
Q psy4065         112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       112 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      +++|.|..|++.|.+...|..|++.|.+        .++|.|.+|++.|.+...|..|+++|+++.+
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~--------~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTVHTG--------EKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHHHCC--------CCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHHcCC--------CCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            4899999999999999999999999887        7899999999999999999999999998754

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.8e-14  Score=103.37  Aligned_cols=59  Identities=19%  Similarity=0.285  Sum_probs=54.5

Q ss_pred             cCcccCcchhhcC-CHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhcc
Q psy4065         113 RPFQCDVCNQGFV-RKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       113 ~~~~C~~C~~~f~-~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      ++|.|.+|++.|. ....|..|++.|+.       .+++|.|.+|++.|.+...|..|+++|+++.+
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~~-------~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEVCQK-------LQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHHHHH-------HHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHHHcC-------CCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            8999999999999 99999999988874       36799999999999999999999999998755

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=2.5e-13  Score=90.85  Aligned_cols=59  Identities=20%  Similarity=0.439  Sum_probs=55.2

Q ss_pred             ccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhcc
Q psy4065         112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       112 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      +++|.|.+|++.|.+...|..|++.|++        .++|.|.+|++.|.+...|..|+++|+++.+
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHERIHCT--------DRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGGGCC--------SCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHcCC--------CCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            4899999999999999999999988876        7899999999999999999999999998765

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=4.3e-13  Score=95.47  Aligned_cols=55  Identities=22%  Similarity=0.414  Sum_probs=51.7

Q ss_pred             cCcccCcchhhc-CCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHH-HHHhhhh
Q psy4065         113 RPFQCDVCNQGF-VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQIHARE  176 (348)
Q Consensus       113 ~~~~C~~C~~~f-~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~  176 (348)
                      ++|.|..|++.| .+...|..|++.| +        +++|.|.+|++.|.+...|..| +++|.++
T Consensus        33 ~~~~C~~C~k~F~~~~~~L~~H~~~h-~--------~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMENC-K--------QEMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHHH-C--------CCCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             CCcCCCCCCCCcccCHHHHHHHHHHH-C--------CCCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            899999999999 9999999999998 7        7899999999999999999999 8888764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.39  E-value=2.9e-13  Score=86.53  Aligned_cols=55  Identities=24%  Similarity=0.491  Sum_probs=50.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      ++|.|.+|++.|.+...|..|++.|++        +++|.|++|++.|.+...|..|++.|++
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTG--------EKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHC--------CCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCC--------CCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            789999999999999999999999887        7899999999999999999999999874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=3.3e-13  Score=92.07  Aligned_cols=61  Identities=21%  Similarity=0.504  Sum_probs=55.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCC-CCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAE-AKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      |++++||.|.+|++.|.+...|..|++.+|.       . .++|.|.+|++.|.+...|..|++.+|..
T Consensus        10 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~-------~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A           10 HSGEKPYECYICHARFTQSGTMKMHILQKHT-------ENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSS-------SSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             cCCCCCeECCCcCchhCCHHHHHHHHHHhcC-------CCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            6889999999999999999999999886665       3 37999999999999999999999998764

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.7e-13  Score=93.55  Aligned_cols=59  Identities=34%  Similarity=0.803  Sum_probs=35.9

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQ  179 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  179 (348)
                      ++|.|.+|++.|.....|..|++.|++        .++|.|.+|++.|.+...|..|+++|+++.++
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~   75 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRTHTG--------EKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS   75 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTTTCC--------SCSEECSSSCCEESSHHHHHHHGGGSCCCCCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHcCC--------CcCeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            556666666666666666666655544        45666666666666666666666666655544

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=5e-13  Score=89.90  Aligned_cols=57  Identities=35%  Similarity=0.782  Sum_probs=54.0

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      ++|.|.+|++.|.....|..|++.|++        +++|.|.+|++.|.+...|..|+++|+++.
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~h~~--------~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRVHTG--------EKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGC--------SCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHhcCC--------CCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            899999999999999999999998887        789999999999999999999999998763

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.37  E-value=4.5e-13  Score=92.45  Aligned_cols=59  Identities=32%  Similarity=0.548  Sum_probs=53.0

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHH-hhhh
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI-HARE   68 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~   68 (348)
                      ...++|.|++|++.|.+...|..|++.|++        +++|.|.+|++.|.+...|.+|++. |.++
T Consensus        24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~--------~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           24 ASAECHLCPVCGESFASKGAQERHLRLLHA--------AQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CCCTTEECTTSCCEESSHHHHHHHHHTTSC--------SSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCEECCCCCCCcCcHHHHhhhhhhccC--------CCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            457899999999999999999999999987        8899999999999999999999865 4443

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=6e-13  Score=91.02  Aligned_cols=63  Identities=22%  Similarity=0.476  Sum_probs=55.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      |++++||+|.+|++.|.+...|..|++.|++..     .+++|.|.+|++.|.....|.+|++.+|..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~-----~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETV-----AALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHT-----TTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccC-----CCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            789999999999999999999999999987410     157999999999999999999999766654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=8.6e-13  Score=93.87  Aligned_cols=74  Identities=15%  Similarity=0.244  Sum_probs=65.2

Q ss_pred             ccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccccccc-CCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcc
Q psy4065          13 NQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF-TRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPL   91 (348)
Q Consensus        13 ~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~   91 (348)
                      ...|.....|..|.+.+++        +++|.|..|++.| .+...|..|++.| ++                       
T Consensus        13 ~~~~~~~~~~~~~~~~~~~--------~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~-----------------------   60 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVD--------KGSVSCPTCQAVGRKTIEGLKKHMENC-KQ-----------------------   60 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHH--------TSCEECTTTCSCEESSHHHHHHHHHHH-CC-----------------------
T ss_pred             CCCCCCchHHHHHHHHhcC--------CCCcCCCCCCCCcccCHHHHHHHHHHH-CC-----------------------
Confidence            3467788899999888876        7899999999999 9999999999999 76                       


Q ss_pred             hhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHH-HHHhCC
Q psy4065          92 RLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRH-RKRAHD  139 (348)
Q Consensus        92 ~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~~h~  139 (348)
                                           ++|.|.+|++.|.....|..| +..|.+
T Consensus        61 ---------------------k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           61 ---------------------EMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             ---------------------CCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             ---------------------CCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence                                 899999999999999999999 765543

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.36  E-value=1.5e-13  Score=103.91  Aligned_cols=81  Identities=19%  Similarity=0.374  Sum_probs=71.1

Q ss_pred             CCcccccccccccC------ChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccch
Q psy4065           4 VRPFQCDVCNQGFV------RKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMS   77 (348)
Q Consensus         4 ~~~y~C~~C~~~f~------~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~   77 (348)
                      ++.|.|.+|...|.      ....|..|+ .|++        +++|.|.+|++.|.....|..|++.|  +         
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~--------~~~~~C~~C~k~f~~~~~l~~H~~~H--~---------   98 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKA--------ISQFVCPLCLMPFSSSVSLKQHIRYT--E---------   98 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHH--------HCSEECTTTCCEESSHHHHHHHHHHT--C---------
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCC--------CCCeECCCCCcccCCHhHHHHHHHHC--C---------
Confidence            45678888887765      667777785 6765        79999999999999999999999998  4         


Q ss_pred             hhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065          78 ALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus        78 ~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                                                         ++|.|.+|++.|.....|..|++.||+
T Consensus        99 -----------------------------------~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           99 -----------------------------------HTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             -----------------------------------CCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             -----------------------------------CCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence                                               789999999999999999999999987

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.35  E-value=7.5e-13  Score=84.54  Aligned_cols=55  Identities=22%  Similarity=0.609  Sum_probs=51.8

Q ss_pred             CcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       114 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ||.|..|++.|.+...|..|++.|++        .++|.|.+|++.|.+...|..|+++|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTD--------VRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSS--------CCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCC--------CCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            58999999999999999999998876        78999999999999999999999999875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=5.5e-13  Score=95.43  Aligned_cols=67  Identities=16%  Similarity=0.217  Sum_probs=36.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHH-HHHhhhhccccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQIHARELLQSSMD  183 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~~~~~~~~  183 (348)
                      ++|.|..|++.|.....|..|++..|..    ...+++|.|.+|++.|.+...|..| +++|.++.++.+..
T Consensus        17 kpy~C~~Cgk~F~~~~~L~~H~r~~H~~----~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~   84 (102)
T 2ghf_A           17 GGYECKYCTFQTPDLNMFTFHVDSEHPN----VVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM   84 (102)
T ss_dssp             SSEECSSCSCEESCHHHHHHHHHHHCSS----CCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEE
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhhCCC----CCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCc
Confidence            5566666666666666666665432210    0024556666666666666666666 45566655555543

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=1.4e-13  Score=93.94  Aligned_cols=58  Identities=21%  Similarity=0.554  Sum_probs=51.8

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ++|.|.+|++.|.....|..|++.+|.      ...++|.|.+|++.|.+...|..|++.+++.
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~~~h~------~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHILQKHT------ENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHHSS------SSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCeECCCcCchhCCHHHHHHHHHHhcC------CCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            899999999999999999999986665      1247999999999999999999999987764

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.34  E-value=7.6e-13  Score=84.51  Aligned_cols=55  Identities=22%  Similarity=0.609  Sum_probs=51.8

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      ||+|..|++.|.+...|..|++.|++        +++|.|..|++.|.+...|.+|++.|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTD--------VRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSS--------CCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCC--------CCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            79999999999999999999998876        78999999999999999999999999875

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.33  E-value=8.7e-13  Score=91.02  Aligned_cols=57  Identities=33%  Similarity=0.580  Sum_probs=52.1

Q ss_pred             ccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHH-Hhhhh
Q psy4065         112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ-IHARE  176 (348)
Q Consensus       112 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~  176 (348)
                      .++|.|++|++.|.+...|..|++.|++        +++|.|.+|++.|.+...|..|++ +|.+|
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~--------~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHA--------AQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSC--------SSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccC--------CCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            3789999999999999999999999987        899999999999999999999985 56655

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=1.5e-12  Score=85.93  Aligned_cols=57  Identities=26%  Similarity=0.679  Sum_probs=52.0

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      ++|.|..|++.|.+...|..|++.+|.      .+.++|.|++|++.|.+...|..|++.|++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~------~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHK------RNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSS------SSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcC------CCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            899999999999999999999988662      147899999999999999999999999876

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.9e-12  Score=83.54  Aligned_cols=56  Identities=45%  Similarity=1.007  Sum_probs=51.0

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHH-HHhhhh
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ-QIHARE  176 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~-~~h~~~  176 (348)
                      ++|.|..|++.|.+...|..|++.|++        .++|.|.+|++.|.+...|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTN--------EKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTS--------SCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCC--------CCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            479999999999999999999988876        78999999999999999999997 567654

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.8e-12  Score=83.75  Aligned_cols=55  Identities=45%  Similarity=1.020  Sum_probs=50.2

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHH-HHhhh
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ-QIHAR   67 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~   67 (348)
                      +||+|.+|++.|.+...|..|++.|++        +++|.|++|++.|.+...|..|+ +.|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTN--------EKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTS--------SCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCC--------CCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            689999999999999999999988876        78999999999999999999998 45554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=4.3e-12  Score=85.47  Aligned_cols=57  Identities=35%  Similarity=0.869  Sum_probs=52.9

Q ss_pred             CCCCCccccc--ccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHh
Q psy4065           1 IDVVRPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH   65 (348)
Q Consensus         1 ~~~~~~y~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   65 (348)
                      |.++++|+|+  .|++.|.+...|..|++.|++        .++|.|.+|++.|.+...|.+|+++|
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTG--------QKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHC--------CCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCC--------CCCeECCCCCchhCCHHHHHHHHHhc
Confidence            5678999997  599999999999999998886        78999999999999999999999876

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2.3e-11  Score=82.96  Aligned_cols=28  Identities=32%  Similarity=0.673  Sum_probs=15.2

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhh
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   67 (348)
                      +++|.|.+|++.|.+...|.+|++.|.+
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (78)
T 2d9h_A            5 SSGLQCEICGFTCRQKASLNWHQRKHAE   32 (78)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CcCeECCCCCCeeCCHHHHHHHHHHhhc
Confidence            4455555555555555555555555554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=6.5e-12  Score=84.58  Aligned_cols=55  Identities=38%  Similarity=0.981  Sum_probs=48.3

Q ss_pred             CCCCccccc--cccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhhhhhhhhccCCCcccCcc
Q psy4065          39 EAKPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQ  116 (348)
Q Consensus        39 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~  116 (348)
                      +.++|.|++  |++.|.+...|..|++.|.++                                            ++|.
T Consensus        16 ~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~--------------------------------------------~~~~   51 (73)
T 1f2i_G           16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQ--------------------------------------------KPFQ   51 (73)
T ss_dssp             CCCCEECSSTTBCCEESSHHHHHHHHHHHHCC--------------------------------------------CCEE
T ss_pred             CCCccCCcCCCCCCccCCHHHHHHHHHhhCCC--------------------------------------------CCeE
Confidence            678899974  999999999999999988876                                            7899


Q ss_pred             cCcchhhcCCHHHHHHHHHHh
Q psy4065         117 CDVCNQGFVRKEHLVRHRKRA  137 (348)
Q Consensus       117 C~~C~~~f~~~~~L~~H~~~~  137 (348)
                      |.+|++.|.....|..|++.|
T Consensus        52 C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           52 CRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCCCchhCCHHHHHHHHHhc
Confidence            999999999999999998655

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=5.1e-11  Score=84.62  Aligned_cols=57  Identities=25%  Similarity=0.375  Sum_probs=50.3

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCC--------ccccccccccCCHHHHHHHHHHhhhh
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKP--------FSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      ..|+|..|++.|.+...|..|++.+|.       ...+        |.|..|++.|.+...|.+|+++|.++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~-------~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~   88 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHV-------GGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE   88 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTT-------CCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhcc-------CCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCC
Confidence            357899999999999999999988454       2344        99999999999999999999999998

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=8.1e-12  Score=82.30  Aligned_cols=57  Identities=25%  Similarity=0.460  Sum_probs=52.4

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc-ccccccCCHHHHHHHHHHhhhh
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS-VCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      .+++||.|..|++.|. ...|..|++. .+        +++|.|. .|++.|.....|..|++.|.+.
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~--------~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CP--------RLPVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CS--------SSEEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cC--------CcCccCCcccCcccccHHHHHHHHHhhccc
Confidence            5789999999999999 9999999887 55        8999999 9999999999999999988765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.09  E-value=6.5e-11  Score=79.33  Aligned_cols=56  Identities=34%  Similarity=0.789  Sum_probs=51.2

Q ss_pred             CCCCcccccc--cccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc--cccccCCHHHHHHHHHHh
Q psy4065           2 DVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH   65 (348)
Q Consensus         2 ~~~~~y~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h   65 (348)
                      ...++|.|.+  |++.|.....|..|++.|++        +++|.|.+  |++.|.....|.+|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTG--------EKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSS--------SCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCC--------CCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            4678999998  99999999999999998876        78999976  999999999999999765

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=82.68  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=14.6

Q ss_pred             cccCcchhhcCCHHHHHHHHHHhCC
Q psy4065         115 FQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus       115 ~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                      |.|..|++.|.....|..|++.|.+
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~~H~~   87 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIRVHTG   87 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHHHHHT
T ss_pred             cCCCCCCcccCCHHHHHHHHHhcCC
Confidence            5566666666666666666655554

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=3.2e-11  Score=79.34  Aligned_cols=55  Identities=25%  Similarity=0.497  Sum_probs=50.9

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc-ccccccCCHHHHHHHHHHhhhhc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS-VCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~-~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      ++|.|..|++.|. ...|..|++. .+        +++|.|. .|++.|.....|..|+++|....
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~-~~--------~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ-CP--------RLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH-CS--------SSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCeeccccCCccC-HHHHHHHHHH-cC--------CcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            7899999999999 9999999987 65        8999999 99999999999999999987653

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.07  E-value=1.1e-10  Score=73.35  Aligned_cols=47  Identities=32%  Similarity=0.658  Sum_probs=41.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTR   54 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~   54 (348)
                      |.+++||+|.+|++.|.....|..|++..|.       .+++|.|.+|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~-------~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------SERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSC-------CCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcC-------CCCCccCCCCCCCCCC
Confidence            5789999999999999999999999873443       4889999999999975

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.2e-13  Score=93.12  Aligned_cols=70  Identities=21%  Similarity=0.349  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccccchhhcccccccCCCcchhhhhhhh
Q psy4065          20 EHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRR   99 (348)
Q Consensus        20 ~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~h~~~   99 (348)
                      ..|..|++.|.+        +++|.|.+|++.|.+...|..       +                               
T Consensus         4 ~~l~~H~~~h~~--------~~~~~C~~C~k~f~~~~~l~~-------~-------------------------------   37 (73)
T 2ctu_A            4 GSSGKRQKIHLG--------DRSQKCSKCGIIFIRRSTLSR-------R-------------------------------   37 (73)
T ss_dssp             CSCCCCCCCCCC--------CSEEECSSSCCEEECCCCCCC-------S-------------------------------
T ss_pred             hhHHHHHHHhCC--------CCCeeCCcccchhCCHHHhCc-------C-------------------------------
Confidence            345566555544        677888888888877776655       1                               


Q ss_pred             hhhhhhccCCCcccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         100 WVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       100 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                                   ++|.|..|++.|.....|..|++.|++        +++|.|++|
T Consensus        38 -------------~~~~C~~C~~~f~~~~~l~~H~~~H~~--------~~~~~C~~C   73 (73)
T 2ctu_A           38 -------------KTPMCEKCRKDSCQEAALNKDEGNESG--------KKTSGPSSG   73 (73)
T ss_dssp             -------------SSCCCHHHHHTCSCCCSSCCCSSCCCC--------CCCSSCCCC
T ss_pred             -------------CCCCCCCCChhhcCHHHHHHHHHhhcC--------CCCCCCCCC
Confidence                         678888888888888888888877765        678888877

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=2.1e-10  Score=69.00  Aligned_cols=41  Identities=24%  Similarity=0.457  Sum_probs=38.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG   49 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~   49 (348)
                      |++++||+|.+|++.|.....|..|++.|++        +++|.|++||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~--------~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG--------SVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSC--------CCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccC--------CCCCCCcCCC
Confidence            7889999999999999999999999999886        8899999996

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.01  E-value=2.2e-10  Score=76.75  Aligned_cols=54  Identities=35%  Similarity=0.827  Sum_probs=49.7

Q ss_pred             ccCcccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc--cccccCCHHHHHHHHHHh
Q psy4065         112 VRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       112 ~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h  173 (348)
                      .++|.|..  |++.|.....|..|++.|.+        +++|.|.+  |++.|.+...|..|+++|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTG--------EKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHHHSS--------SCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHhcCC--------CCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            37899998  99999999999999999887        78999976  999999999999998765

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2.1e-12  Score=86.98  Aligned_cols=53  Identities=23%  Similarity=0.369  Sum_probs=48.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      |.+++||.|.+|++.|.....|..               +++|.|..|++.|.+...|..|++.|.++
T Consensus        13 h~~~~~~~C~~C~k~f~~~~~l~~---------------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~   65 (73)
T 2ctu_A           13 HLGDRSQKCSKCGIIFIRRSTLSR---------------RKTPMCEKCRKDSCQEAALNKDEGNESGK   65 (73)
T ss_dssp             CCCCSEEECSSSCCEEECCCCCCC---------------SSSCCCHHHHHTCSCCCSSCCCSSCCCCC
T ss_pred             hCCCCCeeCCcccchhCCHHHhCc---------------CCCCCCCCCChhhcCHHHHHHHHHhhcCC
Confidence            678999999999999998887776               36899999999999999999999999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.95  E-value=7.1e-10  Score=66.98  Aligned_cols=40  Identities=25%  Similarity=0.544  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|..|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2emk_A            7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCBCSSSCCBCSCHHHHHHHHHHHSS--------CCCSSCCCC
T ss_pred             cCCCCceECCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999988876        789999887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=6.1e-10  Score=67.27  Aligned_cols=40  Identities=23%  Similarity=0.400  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2eq4_A            7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSG--------EKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCBTTTTBCCSCHHHHHHHHHHCCS--------SSCCCCCCC
T ss_pred             CCCCCCeECCCCCCccCchHHHHHHHHhcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=6.4e-10  Score=66.46  Aligned_cols=40  Identities=28%  Similarity=0.512  Sum_probs=36.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   44 (44)
T 2emx_A            5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAE--------EKPSGPSSG   44 (44)
T ss_dssp             CSSCCCEECSSSSCEESSHHHHHHHHHHHTS--------SCSCSCCCC
T ss_pred             cCCCcCccCCCCCcccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999988876        789999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.8e-10  Score=67.07  Aligned_cols=40  Identities=28%  Similarity=0.511  Sum_probs=36.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2emy_A            7 GTGENPYECHECGKAFSRKYQLISHQRTHAG--------EKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHHTT--------SCCSCSSCC
T ss_pred             CCCCcCcCCCCCCcccCcHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        789999887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=7.9e-10  Score=66.76  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2eov_A            7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG--------ERHSGPSSG   46 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHHHHHSC--------CSSCCSCCC
T ss_pred             CCCCCCccCCccChhhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        788999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.3e-10  Score=67.24  Aligned_cols=40  Identities=18%  Similarity=0.357  Sum_probs=36.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2ytm_A            7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTG--------QRPSGPSSG   46 (46)
T ss_dssp             CSSCCSSSBTTTTBCCSSHHHHHHHHHHHHS--------CCCCCCCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999988876        788999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.94  E-value=6.4e-10  Score=67.20  Aligned_cols=40  Identities=33%  Similarity=0.497  Sum_probs=36.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ely_A            7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSBCCSSSCCCBSSTTHHHHHHHHHSC--------CSSCSCCCC
T ss_pred             CCCCCCcccCccCcccCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999998876        789999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.8e-10  Score=67.04  Aligned_cols=40  Identities=28%  Similarity=0.561  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2emm_A            7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHHHSC--------CCTTSSSCC
T ss_pred             cCCCCCeeCCCCChhhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        789999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=8.1e-10  Score=66.72  Aligned_cols=40  Identities=30%  Similarity=0.532  Sum_probs=36.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2eoq_A            7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTA--------EKPSGPSSG   46 (46)
T ss_dssp             SSSSCSCCCSSSCCCCSSHHHHHHHHHHTTC--------CCSSSCCCC
T ss_pred             CCCCCCcCCCcCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999887

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.93  E-value=3.9e-10  Score=68.87  Aligned_cols=42  Identities=24%  Similarity=0.448  Sum_probs=38.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGK   50 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~   50 (348)
                      |..+++|.|.+|++.|.+...|..|++.|.+        +++|.|.+|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSG--------EKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCS--------CCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCC--------CCCccCCCCCC
Confidence            5678999999999999999999999888876        78999999985

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=6.3e-10  Score=67.22  Aligned_cols=40  Identities=25%  Similarity=0.422  Sum_probs=36.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ytq_A            7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSG--------EKPSGPSSG   46 (46)
T ss_dssp             SSCCCSCBCSSSCCBCSCHHHHHHHHTTTCC--------SCSSCCCCC
T ss_pred             cCCCCCcCCCccChhhCChHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888766        789999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=8.3e-10  Score=66.66  Aligned_cols=40  Identities=28%  Similarity=0.517  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2ytd_A            7 GSGEKPYKCSECGKAFHRHTHLNEHRRIHTG--------YRPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHHHTC--------CCSSCSSCC
T ss_pred             cCCCcCeECCCCCCeeCChHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6788999999999999999999999888876        789999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=6.8e-10  Score=67.06  Aligned_cols=40  Identities=25%  Similarity=0.404  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2emp_A            7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHHHHHHC--------CSCCSCCCC
T ss_pred             cCCCcCeECCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6788999999999999999999999888876        788999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=7e-10  Score=67.02  Aligned_cols=40  Identities=33%  Similarity=0.528  Sum_probs=35.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||.|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2eoo_A            7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFR--------EKSSGPSSG   46 (46)
T ss_dssp             CSCCCCEECSSSCCEESSHHHHHHHHHHHHS--------TTSSCCSCC
T ss_pred             CCCCCCEEccccCcccCCHHHHHHHHHHHcC--------CCCCCCCCC
Confidence            6788999999999999999999999888876        788999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=7.1e-10  Score=66.96  Aligned_cols=40  Identities=25%  Similarity=0.497  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2eml_A            7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSG--------KKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHGGGSS--------CCCSCSSCC
T ss_pred             cCCCCCeeCCCcCCccCCHHHHHHHHHHhcC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        789999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=7.1e-10  Score=66.95  Aligned_cols=40  Identities=25%  Similarity=0.504  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2eoe_A            7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTG--------VKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSEETTTTEECSSHHHHHHHHGGGSC--------CCSCSSCCC
T ss_pred             CCCCCCeECCCcChhhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        789999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=7.5e-10  Score=66.86  Aligned_cols=40  Identities=30%  Similarity=0.559  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2emh_A            7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSCCCSEECTTTCCEESSHHHHHHHHHHHHC--------SSCSSSCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            6788999999999999999999999888876        788999887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=7.3e-10  Score=66.93  Aligned_cols=40  Identities=25%  Similarity=0.476  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|..|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2elz_A            7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG--------EKTSGPSSG   46 (46)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHGGGGGS--------CCCCCSCCC
T ss_pred             CCCCCCeeCcccCchhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        789999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=7.4e-10  Score=66.90  Aligned_cols=40  Identities=28%  Similarity=0.395  Sum_probs=36.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2epz_A            7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSBCCTTTCCCBSSHHHHHHHHTTTTT--------CCCCSSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=8.7e-10  Score=66.58  Aligned_cols=40  Identities=25%  Similarity=0.506  Sum_probs=36.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2enc_A            7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSG--------EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHSCC--------SSCCSSCCC
T ss_pred             CCCCCCcCCCCCCCcCCChHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=7e-10  Score=67.01  Aligned_cols=40  Identities=30%  Similarity=0.537  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ytn_A            7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCBCTTTCCBCSSHHHHHHHGGGTSC--------CCCCSCCCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHhhhcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.5e-10  Score=66.62  Aligned_cols=40  Identities=25%  Similarity=0.450  Sum_probs=36.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2en6_A            7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEEETTTTEEESSHHHHHHHHHHHSS--------CCCSSSCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999998876        789999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=9.4e-10  Score=66.42  Aligned_cols=40  Identities=25%  Similarity=0.480  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2ytj_A            7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTK--------QKPSGPSSG   46 (46)
T ss_dssp             TSSCCSEECSSSCCEESSHHHHHHHHHHTSC--------CCCSSCSCC
T ss_pred             CCCCcCeECCCCChhhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        788999876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=6.2e-10  Score=67.26  Aligned_cols=40  Identities=30%  Similarity=0.423  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2emf_A            7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             SSSSCCEECSSSCCEESCHHHHHHHGGGTSC--------SSCSCCCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.9e-10  Score=66.55  Aligned_cols=40  Identities=23%  Similarity=0.355  Sum_probs=36.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2em8_A            7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTG--------EKLSGPSSG   46 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHHHHHHC--------CCCCCSCCC
T ss_pred             CCCCCCeECcccCchhCCHHHHHHHHHHHcC--------CCCCCCCCC
Confidence            6788999999999999999999999988876        788999887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=9.6e-10  Score=66.38  Aligned_cols=40  Identities=25%  Similarity=0.481  Sum_probs=36.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|..|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~c   46 (46)
T 2ytk_A            7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             SSSSCSEECSSSCCEESSHHHHHHHHHHHSS--------SSCSSCCCC
T ss_pred             CCCCCCEeCCcCCCccCCHHHHHHHHHHHCC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        789999887

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=7.1e-10  Score=66.99  Aligned_cols=40  Identities=25%  Similarity=0.439  Sum_probs=36.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ene_A            7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHTTTCC--------CCCCSCCCC
T ss_pred             CCCCCCeECCCCCchhCChHHHHHHHhhcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888765        789999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.2e-10  Score=66.68  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=35.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2eop_A            7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTG--------ENPSGPSSG   46 (46)
T ss_dssp             CCCCCSCBCTTTCCBCSSHHHHHHHHTTTTT--------SCCSCCCCC
T ss_pred             cCCCCCeeCCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888765        789999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.91  E-value=7.2e-10  Score=66.95  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=36.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|..|++.|.....|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2em0_A            7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVG--------EKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCCCSSSCCCCSSHHHHHHHGGGGSS--------SSCSCSSCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHcCC--------CCCcCCCCC
Confidence            6789999999999999999999999888765        789999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.91  E-value=8.1e-10  Score=66.72  Aligned_cols=40  Identities=28%  Similarity=0.468  Sum_probs=36.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2el6_A            7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR--------EKPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHGGGCC--------SSCCSCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=7.5e-10  Score=66.88  Aligned_cols=40  Identities=30%  Similarity=0.497  Sum_probs=36.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2em5_A            7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCCSCSEECSSSCCEESSHHHHHHHHTTTSC--------SCCSSCCCC
T ss_pred             CCCCCCeECCcCCCccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888765        789999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=8.6e-10  Score=66.59  Aligned_cols=40  Identities=30%  Similarity=0.493  Sum_probs=36.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|++|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2eme_A            7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             TCCCCSEECSSSCCEESSHHHHHHHHGGGCC--------CSCCSSCCC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        788999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=7.2e-10  Score=66.95  Aligned_cols=40  Identities=30%  Similarity=0.495  Sum_probs=36.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2eq0_A            7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             TTCCCCEECTTTCCEESSHHHHHHHHTTTCC--------CCCSCCSCC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888766        789999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=6.9e-10  Score=67.02  Aligned_cols=40  Identities=25%  Similarity=0.503  Sum_probs=36.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2em7_A            7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTG--------EKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHGGGGTT--------CCCSSTTCC
T ss_pred             CCCCcCccCCCccchhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888765        789999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.90  E-value=8.6e-10  Score=66.61  Aligned_cols=40  Identities=25%  Similarity=0.416  Sum_probs=35.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2ema_A            7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CTTSCCEECSSSCCEESSHHHHHHHHTGGGC--------CCCCSSSCC
T ss_pred             CCCCcCcCCCCCcchhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        789999887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1e-09  Score=66.22  Aligned_cols=40  Identities=20%  Similarity=0.214  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2yso_A            7 GSREKSHQCRECGEIFFQYVSLIEHQVLHMG--------QKNSGPSSG   46 (46)
T ss_dssp             SSCCCCEECTTTCCEESSHHHHHHHHHHHSC--------CSCCCTTCC
T ss_pred             cCCCCCEEccccChhhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        788999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=8e-10  Score=66.74  Aligned_cols=40  Identities=25%  Similarity=0.512  Sum_probs=36.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2ytr_A            7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSSCCTTCCTTTCCCCSSHHHHHHHHTTTTT--------CSCCCSCCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888765        789999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=9.7e-10  Score=68.92  Aligned_cols=43  Identities=30%  Similarity=0.644  Sum_probs=38.9

Q ss_pred             ccCcccCcchhhcCCHHHHHHHHH-HhCCCCCCCCCCCCCccccccccccCC
Q psy4065         112 VRPFQCDVCNQGFVRKEHLVRHRK-RAHDLDPPEGAEAKPFSCSVCGKTFTR  162 (348)
Q Consensus       112 ~~~~~C~~C~~~f~~~~~L~~H~~-~~h~~~~~~~~~~~~~~C~~C~~~f~~  162 (348)
                      +++|.|.+|++.|.....|..|++ .|.+        +++|.|.+|++.|.+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~--------~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIKQVHTS--------ERPHKCQVWVSGPSS   53 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCC--------CCCCCSSSSCCSSCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHhcCC--------CCCccCCCCCCCCCC
Confidence            489999999999999999999997 5655        899999999999976

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=6.7e-10  Score=67.10  Aligned_cols=40  Identities=30%  Similarity=0.574  Sum_probs=36.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2yu8_A            7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTG--------GKPSGPSSG   46 (46)
T ss_dssp             CCCCSSEECSSSCCEESSSHHHHHHTHHHHS--------CCCSCSCCC
T ss_pred             CCCCCCeECCcCCchhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        789999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1e-09  Score=66.29  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=35.8

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2ep2_A            7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHTTSS--------CCSCCSCCC
T ss_pred             CCCCcCcCCCCCCcccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=9.5e-10  Score=66.40  Aligned_cols=40  Identities=25%  Similarity=0.398  Sum_probs=36.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2epw_A            7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVD--------DKHSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSSHHHHHHHHHCCS--------CCCSCCCCC
T ss_pred             CCCCCCeeCCCCCCccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888765        789999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6.4e-10  Score=67.19  Aligned_cols=40  Identities=25%  Similarity=0.407  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|.+|++.|.+...|..|++.|++        +++|.|.+|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTR--------EKPSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTHHHH--------CCCCSCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6788999999999999999999999888876        788999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.89  E-value=8.8e-10  Score=66.55  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=36.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2em9_A            7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSG--------EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHGGGGTS--------CCCCSTTCC
T ss_pred             CCCCcCeECCccccccCChHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888765        789999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.9e-10  Score=66.52  Aligned_cols=40  Identities=28%  Similarity=0.474  Sum_probs=36.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTTTSS--------SCCCSCCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.88  E-value=7.7e-10  Score=66.80  Aligned_cols=40  Identities=28%  Similarity=0.494  Sum_probs=36.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2el4_A            7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG--------VKPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHGGGSSS--------CCCSCCTTC
T ss_pred             CCCCCceECCCCCchhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888765        789999887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.9e-10  Score=66.77  Aligned_cols=40  Identities=25%  Similarity=0.451  Sum_probs=36.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2ysp_A            7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG--------ERPSGPSSG   46 (46)
T ss_dssp             CSSCCSEEETTTTEEESCHHHHHHHHTTSCS--------CCSSCCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHhhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888765        789999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1e-09  Score=66.23  Aligned_cols=40  Identities=20%  Similarity=0.202  Sum_probs=36.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2en8_A            7 GSGEKSHTCDECGKNFCYISALRIHQRVHMG--------EKCSGPSSG   46 (46)
T ss_dssp             CCCCSSEECTTTCCEESSHHHHHHHHTTTCC--------SCSSCCSCC
T ss_pred             CCCCCCeECCCcCcccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999887766        789999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=9.9e-10  Score=66.32  Aligned_cols=40  Identities=25%  Similarity=0.488  Sum_probs=35.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2en1_A            7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGGSC--------CCCSCCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.6e-10  Score=67.11  Aligned_cols=40  Identities=25%  Similarity=0.509  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ytg_A            7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEECTTTCCEESSSHHHHTTGGGGSS--------CCSSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6789999999999999999999999888776        789999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=2.2e-09  Score=64.79  Aligned_cols=40  Identities=28%  Similarity=0.465  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~~   46 (46)
T 2em2_A            7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHHCC--------CCSSCSSCC
T ss_pred             CCCCCCEECCcCCchhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999999999999999999999888876        788999875

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.4e-09  Score=65.64  Aligned_cols=40  Identities=25%  Similarity=0.475  Sum_probs=34.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~~   46 (46)
T 2ep3_A            7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHTTTTT--------SCCCCTTCC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            6788999999999999999999999887765        788999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.7e-09  Score=65.51  Aligned_cols=40  Identities=25%  Similarity=0.501  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHH-HhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRK-RAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~-~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.+|++.|.....|..|++ .|.+        +++|.|.+|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~--------~k~~~C~~C   47 (47)
T 2epx_A            7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTG--------EKPSGPSSG   47 (47)
T ss_dssp             CCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTT--------SCSSSCCCC
T ss_pred             cCCCCCEECCccCchhCChHHHHHHhHhhcCC--------CCCCCCCCC
Confidence            678999999999999999999999988 6655        789999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=3.4e-10  Score=68.41  Aligned_cols=36  Identities=25%  Similarity=0.534  Sum_probs=32.5

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHERLHSG--------EKPSGPSSG   46 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHHHCCS--------SSCCCCCCC
T ss_pred             CCeECCCCCCccCchHHHHHHHHhcCC--------CCCCCCCCC
Confidence            889999999999999999999988776        789999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=4e-10  Score=68.08  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=32.5

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQKCHTG--------ERHSGPSSG   46 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHHHSC--------CSSCCSCCC
T ss_pred             CCccCCccChhhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        789999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.83  E-value=4.6e-10  Score=67.83  Aligned_cols=36  Identities=28%  Similarity=0.694  Sum_probs=32.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+.|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQRVHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHHHHSS--------CCCSSCCCC
T ss_pred             CceECCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            889999999999999999999988876        789999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=4.2e-10  Score=68.01  Aligned_cols=36  Identities=31%  Similarity=0.712  Sum_probs=32.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHSC--------CCTTSSSCC
T ss_pred             CCeeCCCCChhhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999988876        789999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=5.3e-10  Score=67.56  Aligned_cols=36  Identities=28%  Similarity=0.623  Sum_probs=32.0

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQKIHTK--------QKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSC--------CCCSSCSCC
T ss_pred             cCeECCCCChhhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        788999887

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=5e-10  Score=67.67  Aligned_cols=36  Identities=33%  Similarity=0.680  Sum_probs=32.5

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMVHTA--------EKPSGPSSG   46 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHTTC--------CCSSSCCCC
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        789999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=4.1e-10  Score=68.07  Aligned_cols=36  Identities=31%  Similarity=0.657  Sum_probs=32.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQRTHAG--------EKPSGPSSG   46 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHTT--------SCCSCSSCC
T ss_pred             cCcCCCCCCcccCcHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        789999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.5e-10  Score=68.35  Aligned_cols=36  Identities=28%  Similarity=0.641  Sum_probs=32.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQRIHSG--------KKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGSS--------CCCSCSSCC
T ss_pred             CCeeCCCcCCccCCHHHHHHHHHHhcC--------CCCCCCCCC
Confidence            889999999999999999999988876        789999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=5.3e-10  Score=66.82  Aligned_cols=36  Identities=31%  Similarity=0.629  Sum_probs=32.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   44 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQTHAE--------EKPSGPSSG   44 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHHTS--------SCSCSCCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999988876        788999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.1e-10  Score=68.05  Aligned_cols=36  Identities=28%  Similarity=0.649  Sum_probs=32.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQRIHTG--------VKPSGPSSG   46 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHGGGSC--------CCSCSSCCC
T ss_pred             CCeECCCcChhhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            889999999999999999999988876        789999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.7e-10  Score=67.80  Aligned_cols=36  Identities=31%  Similarity=0.659  Sum_probs=32.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRRIHTG--------YRPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHTC--------CCSSCSSCC
T ss_pred             cCeECCCCCCeeCChHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        789999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.81  E-value=4.5e-10  Score=67.87  Aligned_cols=36  Identities=28%  Similarity=0.552  Sum_probs=32.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQKIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTGGGC--------CCCCSSSCC
T ss_pred             cCcCCCCCcchhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        789999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=3.9e-10  Score=68.14  Aligned_cols=36  Identities=25%  Similarity=0.489  Sum_probs=31.8

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQVIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHHHHHC--------CSCCSCCCC
T ss_pred             cCeECCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        788999887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=4.8e-10  Score=67.73  Aligned_cols=36  Identities=28%  Similarity=0.619  Sum_probs=32.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|..|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~c   46 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHSS--------SSCSSCCCC
T ss_pred             CCEeCCcCCCccCCHHHHHHHHHHHCC--------CCCCCCCCC
Confidence            889999999999999999999988876        789999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=4.8e-10  Score=67.72  Aligned_cols=36  Identities=33%  Similarity=0.633  Sum_probs=32.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGCC--------CSCCSSCCC
T ss_pred             CCeECCCCChhhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            789999999999999999999988776        789999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.80  E-value=3.7e-10  Score=68.24  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=32.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|..|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQNVHVG--------EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGGGGSS--------SSCSCSSCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHcCC--------CCCcCCCCC
Confidence            889999999999999999999988776        789999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=4.2e-10  Score=68.00  Aligned_cols=36  Identities=33%  Similarity=0.684  Sum_probs=32.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRGIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGGGTSC--------CCCCSCCCC
T ss_pred             cCeECCCCCCeeCCHHHHHHHhhhcCC--------CCCCCCCCC
Confidence            889999999999999999999988776        789999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=3.8e-10  Score=68.22  Aligned_cols=36  Identities=33%  Similarity=0.598  Sum_probs=32.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTTTSC--------SCCSSCCCC
T ss_pred             CCeECCcCCCccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999987766        789999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.6e-10  Score=67.81  Aligned_cols=36  Identities=22%  Similarity=0.501  Sum_probs=32.0

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRIHTG--------ENPSGPSSG   46 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTTT--------SCCSCCCCC
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988766        789999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.5e-10  Score=67.90  Aligned_cols=36  Identities=36%  Similarity=0.672  Sum_probs=31.5

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLKRHFR--------EKSSGPSSG   46 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHHS--------TTSSCCSCC
T ss_pred             CCEEccccCcccCCHHHHHHHHHHHcC--------CCCCCCCCC
Confidence            789999999999999999999988876        788999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=7.2e-10  Score=66.97  Aligned_cols=36  Identities=19%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQRLHTG--------QRPSGPSSG   46 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHHHHHS--------CCCCCCCCC
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        789999887

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=5.5e-09  Score=61.96  Aligned_cols=39  Identities=26%  Similarity=0.371  Sum_probs=33.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|..|++.|.....|..|++.|.+        +++|.|.+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   43 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHS--------DKSGPSSG   43 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTC--------TTCSSSCC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCC--------CCCccCCC
Confidence            6788999999999999999999999888876        78898863

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.5e-10  Score=67.87  Aligned_cols=36  Identities=33%  Similarity=0.710  Sum_probs=31.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQKIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHHHHC--------SSCSSSCCC
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            789999999999999999999888876        788999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=6.1e-10  Score=67.27  Aligned_cols=36  Identities=31%  Similarity=0.528  Sum_probs=32.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHTTTTT--------CCCCSSCCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999987776        789999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=6.1e-10  Score=67.28  Aligned_cols=36  Identities=28%  Similarity=0.652  Sum_probs=32.0

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+.|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHTTSS--------CCSCCSCCC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999988776        789999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=5e-10  Score=67.65  Aligned_cols=36  Identities=28%  Similarity=0.659  Sum_probs=32.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHTTTTT--------CSCCCSCCC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            889999999999999999999987776        789999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.79  E-value=5.3e-10  Score=67.55  Aligned_cols=36  Identities=36%  Similarity=0.641  Sum_probs=32.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHKLHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHHHHSC--------CSSCSCCCC
T ss_pred             CCcccCccCcccCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        789999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=7.1e-10  Score=66.97  Aligned_cols=36  Identities=28%  Similarity=0.561  Sum_probs=32.7

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMRTHSG--------EKPSGPSSG   46 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHTTTCC--------SCSSCCCCC
T ss_pred             CCcCCCccChhhCChHHHHHHHHHhCC--------CCCCCCCCC
Confidence            889999999999999999999988776        789999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=5.5e-10  Score=67.48  Aligned_cols=36  Identities=28%  Similarity=0.576  Sum_probs=32.5

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHTTTCC--------CCCCSCCCC
T ss_pred             CCeECCCCCchhCChHHHHHHHhhcCC--------CCCCCCCCC
Confidence            889999999999999999999988766        789999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.8e-10  Score=67.74  Aligned_cols=36  Identities=33%  Similarity=0.639  Sum_probs=32.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTTTCC--------CCCSCCSCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            889999999999999999999988776        789999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.78  E-value=3.8e-10  Score=68.22  Aligned_cols=36  Identities=28%  Similarity=0.589  Sum_probs=32.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQRSHTG--------VKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGGGSSS--------CCCSCCTTC
T ss_pred             CceECCCCCchhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999987776        789999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=6.2e-10  Score=67.24  Aligned_cols=36  Identities=28%  Similarity=0.585  Sum_probs=32.7

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQRTHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHHHHSS--------CCCSSSCCC
T ss_pred             cCeECCCCCcccCchHHHHHHHHHcCC--------CCCCCCCCC
Confidence            889999999999999999999988876        789999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=6e-10  Score=67.31  Aligned_cols=36  Identities=33%  Similarity=0.572  Sum_probs=32.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~c   46 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQKIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGGGTSC--------SSCSCCCCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999988776        789999887

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=5.6e-09  Score=62.93  Aligned_cols=39  Identities=31%  Similarity=0.526  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2em4_A            7 GTGQRPYECIECGKAFKTKSSLICHRRSHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHHHHSS--------SSCCCCCC
T ss_pred             cCCCcCcCCCCCCCccCCHHHHHHHHHhcCC--------CCCCCCCC
Confidence            6788899999999999999999999888776        77888863

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=4.8e-10  Score=67.73  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=32.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQRVHMG--------EKCSGPSSG   46 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHTTTCC--------SCSSCCSCC
T ss_pred             CCeECCCcCcccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999987766        789999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=5.9e-10  Score=67.33  Aligned_cols=36  Identities=28%  Similarity=0.627  Sum_probs=32.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQRVHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGGSC--------CCCSCCCCC
T ss_pred             CCeeCCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988776        789999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=6.8e-10  Score=67.07  Aligned_cols=36  Identities=28%  Similarity=0.648  Sum_probs=32.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHMVHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGGGGTT--------CCCSSTTCC
T ss_pred             cCccCCCccchhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999988776        789999887

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.76  E-value=6.3e-09  Score=62.69  Aligned_cols=39  Identities=26%  Similarity=0.468  Sum_probs=32.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2emj_A            7 GTGEKPFECAECGKSFSISSQLATHQRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHHHHTT--------SCSSSSCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            6778889999999999888899999888765        67888863

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=7.9e-10  Score=66.78  Aligned_cols=36  Identities=25%  Similarity=0.552  Sum_probs=32.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|..|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQRVHMG--------EKTSGPSSG   46 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGGGGGS--------CCCCCSCCC
T ss_pred             CCeeCcccCchhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            889999999999999999999988876        789999987

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=7.6e-09  Score=62.31  Aligned_cols=39  Identities=23%  Similarity=0.407  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2en9_A            7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCSSCCCBCTTTCCBCSSHHHHHHHHHHHTS--------SCCCSCCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHHcCC--------CCCCCCCC
Confidence            6788899999999999999999999888876        77888864

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=3.3e-09  Score=64.64  Aligned_cols=39  Identities=26%  Similarity=0.523  Sum_probs=35.7

Q ss_pred             ccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccccc
Q psy4065         112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGK  158 (348)
Q Consensus       112 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~  158 (348)
                      +++|.|.+|++.|.....|..|++.|.+        +++|.|.+|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C~k   48 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLSHSG--------EKPYSSGPSSG   48 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCS--------CCCCCSCCCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHhcCC--------CCCccCCCCCC
Confidence            4899999999999999999999988876        78999999985

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=7.2e-09  Score=62.42  Aligned_cols=39  Identities=23%  Similarity=0.402  Sum_probs=33.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.+
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSS--------CCCSSCCC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCC--------CCCCCCCC
Confidence            6788999999999999999999999888876        78898863

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.76  E-value=5.8e-10  Score=67.37  Aligned_cols=36  Identities=25%  Similarity=0.577  Sum_probs=32.0

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQRVHSG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGGGTS--------CCCCSTTCC
T ss_pred             cCeECCccccccCChHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999988776        788999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=5.5e-10  Score=67.48  Aligned_cols=36  Identities=28%  Similarity=0.531  Sum_probs=31.7

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQRTHVD--------DKHSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHHCCS--------CCCSCCCCC
T ss_pred             CCeeCCCCCCccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999988766        788999887

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=6.5e-09  Score=62.59  Aligned_cols=39  Identities=23%  Similarity=0.464  Sum_probs=32.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2eow_A            7 GTGEKPYKCNECGKAFRARSSLAIHQATHSG--------EKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECTTSCCEESSHHHHHHHHHHHCC--------CSCSCTTC
T ss_pred             CCCCCCeeccccCChhcCHHHHHHHHHHcCC--------CCCCCCCC
Confidence            6788899999999999999999999888776        77888864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=7.9e-09  Score=60.83  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=32.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   42 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTV--------KSGPSSG   42 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHHTSC--------CSSCCCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            6788999999999999999999999888765        6788874

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=1.1e-09  Score=66.06  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=32.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQVLHMG--------QKNSGPSSG   46 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHSC--------CSCCCTTCC
T ss_pred             CCEEccccChhhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999988876        788999887

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.4e-09  Score=63.40  Aligned_cols=39  Identities=28%  Similarity=0.555  Sum_probs=33.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2eon_A            7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG--------ERPSGPSS   45 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHTTTTTS--------CCSCTTSC
T ss_pred             CCCCcccCCCCCCcccCcHHHHHHHHHhcCC--------CCCCCCCC
Confidence            6788999999999999999999999887765        78899864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.75  E-value=5.7e-09  Score=61.48  Aligned_cols=38  Identities=24%  Similarity=0.541  Sum_probs=32.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   42 (42)
T 2el5_A            5 SSGENPYECSECGKAFNRKDQLISHQRTHAG--------ESGPSSG   42 (42)
T ss_dssp             SSSCCSEECSSSCCEESSHHHHHHHHGGGCC--------CCSCCCC
T ss_pred             CCCCCCccCCCcChhhCCHHHHHHHHHhcCC--------CCCCCCC
Confidence            6788999999999999999999999888776        7788884

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=7.1e-10  Score=66.99  Aligned_cols=36  Identities=28%  Similarity=0.590  Sum_probs=32.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQKVHTG--------ERPSGPSSG   46 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHTTSCS--------CCSSCCSCC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHhhCC--------CCCCCCCCC
Confidence            889999999999999999999987766        789999987

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=7.5e-09  Score=62.34  Aligned_cols=39  Identities=33%  Similarity=0.654  Sum_probs=33.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|+.
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~--------~~~~~C~~   45 (46)
T 2em3_A            7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTG--------EKPSGPSS   45 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHHHHCC--------CCCCCSCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            6788899999999999999999999888776        77888864

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.1e-10  Score=68.08  Aligned_cols=36  Identities=33%  Similarity=0.727  Sum_probs=31.5

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRRVHTG--------GKPSGPSSG   46 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTHHHHS--------CCCSCSCCC
T ss_pred             CCeECCcCCchhCCHHHHHHHHHhcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        788999887

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=6.6e-09  Score=62.59  Aligned_cols=39  Identities=28%  Similarity=0.457  Sum_probs=33.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~   45 (46)
T 2emg_A            7 GTGENPFICSECGKVFTHKTNLIIHQKIHTG--------ERPSGPSS   45 (46)
T ss_dssp             CCSCCSCBCTTTCCBCSSHHHHHHHHTTTSC--------CCCSCSCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            6788999999999999999999999887765        78888864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=6.5e-09  Score=62.61  Aligned_cols=39  Identities=33%  Similarity=0.594  Sum_probs=32.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|..|++.|.....|..|++.|.+        +++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2enf_A            7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCCCSCBCSSSCCBCSSHHHHHHHHTTTTT--------SSCCCCSC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHhhCC--------CCCCCCCC
Confidence            6788899999999999999999999777765        77888864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=7.8e-10  Score=66.79  Aligned_cols=36  Identities=28%  Similarity=0.617  Sum_probs=30.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~~   46 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQKIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTTTTT--------SCCCCTTCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            788999999999999999999877765        788888875

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=5.7e-09  Score=62.88  Aligned_cols=39  Identities=28%  Similarity=0.499  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|+.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2ytp_A            7 GTGERHYECSECGKAFARKSTLIMHQRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSC--------CCCCSSCC
T ss_pred             cCCCCCeECCcCCcccCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            6788999999999999999999999887765        78888863

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=6.9e-09  Score=62.47  Aligned_cols=39  Identities=28%  Similarity=0.543  Sum_probs=32.8

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2ytf_A            7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTG--------EKPSGPSS   45 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHTSCS--------SSSSCCCC
T ss_pred             CCCCCCcCCCCCCcccCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            6788899999999999999999999887765        77888864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=9.4e-09  Score=61.89  Aligned_cols=38  Identities=21%  Similarity=0.497  Sum_probs=32.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~   44 (46)
T 2eoh_A            7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTG--------ERSSGPS   44 (46)
T ss_dssp             CCCSCSCCCSSSCCCCSSHHHHHHHHHHCSS--------CCSCSTT
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            6788899999999999999999999887765        7788886

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=7.2e-09  Score=62.39  Aligned_cols=39  Identities=23%  Similarity=0.526  Sum_probs=31.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|++
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~kp~~C~~   45 (46)
T 2eor_A            7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECTTTCCEESSHHHHHHHHHHHHS--------CCCSSSTT
T ss_pred             cCCCcCccCCCCCCCcCCHHHHHHHHHhcCC--------CCCCCCCC
Confidence            5678888888888888888888888887776        67788863

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=8.5e-09  Score=62.08  Aligned_cols=39  Identities=23%  Similarity=0.502  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|..|++.|.+...|..|++.|.+        +++|.|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2ep1_A            7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTG--------ENPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCSSSCCCCSSHHHHHHHHGGGSS--------SCCCSSSC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            6788999999999999999999999887765        78888864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=8.4e-09  Score=62.11  Aligned_cols=38  Identities=26%  Similarity=0.468  Sum_probs=31.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.....|..|++.|++        +++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (46)
T 2eoz_A            7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ--------ETLSGPS   44 (46)
T ss_dssp             CSSCCSEEETTTTEEESSHHHHHHHHHHHSS--------CCSSSCC
T ss_pred             CCCCCCeECcccChhhCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            6778888998899999888899999888776        6788886

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=9.6e-09  Score=61.54  Aligned_cols=37  Identities=27%  Similarity=0.565  Sum_probs=34.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG  157 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~  157 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|+
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~H~~--------~~~~~C~~cg   45 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVRSHDG--------SVGKSGPSSG   45 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC--------CCCCCCCCCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHccC--------CCCCCCcCCC
Confidence            899999999999999999999998887        8899999996

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=5.8e-09  Score=62.52  Aligned_cols=39  Identities=28%  Similarity=0.452  Sum_probs=33.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |.+++||+|.+|++.|.....|..|++.|.+        +++|.|+.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTG--------EKSGPSSG   45 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTTTSS--------CCCCCSCC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHHhCC--------CCCCCCCC
Confidence            6788999999999999999999999887765        78898863

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=7.4e-09  Score=62.36  Aligned_cols=39  Identities=31%  Similarity=0.566  Sum_probs=32.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2yti_A            7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTTTSC--------SCCSSTTC
T ss_pred             CCCCcCeECCCCCcccCChhHHHHHhHhcCC--------CCCCCCCC
Confidence            6788999999999999999999999877765        77888864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=8.8e-09  Score=62.02  Aligned_cols=39  Identities=26%  Similarity=0.470  Sum_probs=32.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|..
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2emi_A            7 GTGERHYECSECGKAFIQKSTLSMHQRIHRG--------EKPSGPSS   45 (46)
T ss_dssp             CSSCCCEECSSSCCEESSHHHHHHHHGGGCS--------CCCCSCCC
T ss_pred             cCCCCCCCCCCCCcccCCHHHHHHHHhHhCC--------CCCCCCCC
Confidence            6788899999999999999999999887765        67888863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9e-09  Score=61.97  Aligned_cols=39  Identities=28%  Similarity=0.475  Sum_probs=32.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2em6_A            7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHTTTSS--------SCCCCTTC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCC
Confidence            6788999999999999999999999877765        78888864

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=4.1e-10  Score=68.04  Aligned_cols=36  Identities=28%  Similarity=0.655  Sum_probs=32.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQRVHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGGGGSS--------CCSSCSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988776        789999887

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.1e-08  Score=61.51  Aligned_cols=38  Identities=24%  Similarity=0.436  Sum_probs=30.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~   44 (46)
T 2yto_A            7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG--------ERHSGPS   44 (46)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHTC--------CCBTTTB
T ss_pred             cCCCCCEECcccCCccCCHhHHHHHHHHcCC--------CCCCCCC
Confidence            6678888888888888888888888877765        6778875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=8.7e-09  Score=62.04  Aligned_cols=39  Identities=28%  Similarity=0.544  Sum_probs=32.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|..|++.|.+...|..|++.|.+        +++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2eq2_A            7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTG--------EKPSGPSS   45 (46)
T ss_dssp             SSSSCSSSCCSSCCCCSSHHHHHHHGGGGCC--------CCCCCCCC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCC
Confidence            6788999999999999999999999877765        77888863

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=9.3e-09  Score=61.92  Aligned_cols=39  Identities=23%  Similarity=0.445  Sum_probs=32.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2eq1_A            7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCTTTTCCCSSHHHHHHHHTTTCC--------SCCSSCCC
T ss_pred             cCCCCCeECCcCChhhCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            6788999999999999999999999887765        77888863

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=2e-09  Score=64.94  Aligned_cols=36  Identities=31%  Similarity=0.601  Sum_probs=31.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~~   46 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHCC--------CCSSCSSCC
T ss_pred             CCEECCcCCchhCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999988876        788998875

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=9.7e-09  Score=61.84  Aligned_cols=39  Identities=31%  Similarity=0.569  Sum_probs=32.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|..|++.|.+...|..|++.|.+        +++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2yth_A            7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCSSSBCCSSSCCCBSSHHHHHHHGGGGTT--------CCCSSCCC
T ss_pred             CCCCcCCCCCCCCcccCCHHHHHHHHHhcCC--------CCCCCCCC
Confidence            6778889999999999999999999877765        67888863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.2e-08  Score=60.76  Aligned_cols=38  Identities=21%  Similarity=0.462  Sum_probs=29.8

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (44)
T 2eof_A            7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTG--------ESGPSSG   44 (44)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHTTT--------SSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHhHHHHHHHHhCC--------CCCCCCC
Confidence            5677888888888888888888888777765        6777774

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.70  E-value=1.3e-08  Score=59.94  Aligned_cols=37  Identities=22%  Similarity=0.509  Sum_probs=30.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC   45 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C   45 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|
T Consensus         6 H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~--------~k~~~C   42 (42)
T 2epc_A            6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ--------SGPSSG   42 (42)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTTC--------CCCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHhhhcCC--------CCCCCC
Confidence            6778888888888888888888888877765        677776

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=7.1e-09  Score=60.73  Aligned_cols=37  Identities=24%  Similarity=0.443  Sum_probs=31.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC   45 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C   45 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTG--------SGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCC--------CSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCC--------CCCcCC
Confidence            6788999999999999999999999877765        678877

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1e-08  Score=61.07  Aligned_cols=38  Identities=24%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (44)
T 2yu5_A            7 GAGENPFKCSKCDRVFTQRNYLVQHERTHAR--------KSGPSSG   44 (44)
T ss_dssp             CSCCCSEECSSSSCEESSSHHHHHHHHHCCC--------CCSSCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHhHhcCC--------CCCCCCC
Confidence            6788899999999999999999999887765        6788874

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=8.2e-09  Score=61.48  Aligned_cols=38  Identities=29%  Similarity=0.468  Sum_probs=31.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (44)
T 2eoj_A            7 GTGENPYECCECGKVFSRKDQLVSHQKTHSG--------QSGPSSG   44 (44)
T ss_dssp             SSSCCSCEETTTTEECSSHHHHHHHHTTSSS--------SCSCCCC
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHHcCC--------CCCCCCC
Confidence            6788899999999999999999999777765        6788884

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.6e-09  Score=61.82  Aligned_cols=39  Identities=26%  Similarity=0.536  Sum_probs=32.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|..
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2yrj_A            7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHHTTTSS--------CCSSCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHcCC--------CCCCCCCC
Confidence            6788899999999999999999999877765        77888863

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.2e-09  Score=61.92  Aligned_cols=39  Identities=33%  Similarity=0.628  Sum_probs=32.8

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~p~~C~~   45 (46)
T 2yts_A            7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHGGGTSS--------CCSSCCCC
T ss_pred             CCCCcCEECCCCChhhCChHHHHHHHHhcCC--------CCCcCCCC
Confidence            6788899999999999999999999877765        77888864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.1e-08  Score=60.95  Aligned_cols=38  Identities=21%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (44)
T 2en7_A            7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTG--------ESGPSSG   44 (44)
T ss_dssp             SSSSSSSCCTTTCCCCSSHHHHHHHHTTTCC--------SSSSCCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHhhhcCC--------CCCCCCC
Confidence            6778899999999999999999999877765        6788874

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.9e-09  Score=65.37  Aligned_cols=36  Identities=28%  Similarity=0.644  Sum_probs=31.7

Q ss_pred             cCcccCcchhhcCCHHHHHHHHH-HhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRK-RAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~-~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++ .|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~~H~~--------~k~~~C~~C   47 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWRYYHTG--------EKPSGPSSG   47 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHTTTTTT--------SCSSSCCCC
T ss_pred             CCEECCccCchhCChHHHHHHhHhhcCC--------CCCCCCCCC
Confidence            78999999999999999999997 6665        789999887

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.3e-09  Score=62.50  Aligned_cols=40  Identities=33%  Similarity=0.520  Sum_probs=36.1

Q ss_pred             CCCCCccccc--ccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy4065           1 IDVVRPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC   48 (348)
Q Consensus         1 ~~~~~~y~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C   48 (348)
                      |++++||+|.  .|++.|.....|..|++.|.+        +++|+|.+|
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG--------VKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTTSCC--------CCSCSSCCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            6789999998  899999999999999888765        789999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.4e-09  Score=61.90  Aligned_cols=38  Identities=34%  Similarity=0.589  Sum_probs=26.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |.+++||+|.+|++.|.+...|..|++.|.+        +++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~   44 (46)
T 2emz_A            7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSR--------EKSSGPS   44 (46)
T ss_dssp             SSCCCSCCCSSSCCCCSSHHHHHHHHHHHHH--------TTCCCSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            5566777777777777777777777766665        5667665

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.4e-09  Score=60.53  Aligned_cols=37  Identities=27%  Similarity=0.505  Sum_probs=28.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC   45 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C   45 (348)
                      |++++||+|..|++.|.+...|..|++.|.+        +++|.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C   42 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTG--------SGPSSG   42 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTHHHHS--------CCSSCC
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHHHcCC--------CCCCCC
Confidence            5677888888888888888888888777765        667776

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=1.7e-08  Score=60.07  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=30.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |.+++||.|.+|++.|.....|..|++.|.+        +++|.|.
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~   44 (44)
T 2eou_A            7 GAAKTTSECQECGKIFRHSSLLIEHQALHAG--------ESGPSSG   44 (44)
T ss_dssp             CSSSCCCCCTTTCCCCSSHHHHHHHHHHHTT--------SCCCCCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHHCC--------CCCCCCC
Confidence            5678888888888888888888888887765        6778874

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=9.6e-09  Score=61.86  Aligned_cols=38  Identities=29%  Similarity=0.598  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~   44 (46)
T 2enh_A            7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSG--------EKPSGPS   44 (46)
T ss_dssp             CCCSSSCBCTTTCCBCSSSHHHHHHGGGSCC--------SCCCCCC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            6788999999999999999999999887765        7888886

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=9.5e-09  Score=60.51  Aligned_cols=37  Identities=22%  Similarity=0.466  Sum_probs=30.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC   45 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C   45 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|+|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C   42 (42)
T 2eos_A            6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTG--------SGPSSG   42 (42)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHTTTTSC--------CSSTTC
T ss_pred             cCCCCCEECCCCCCccCCHHHHHHHHHhcCC--------CCCCCC
Confidence            6788899999999999999999999877765        677776

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.67  E-value=2.2e-09  Score=67.24  Aligned_cols=50  Identities=18%  Similarity=0.354  Sum_probs=40.6

Q ss_pred             hhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhccc
Q psy4065         122 QGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQ  179 (348)
Q Consensus       122 ~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  179 (348)
                      +.|.....|..|++.|.+        +++|.|.+|++.|.....|..|+++|.++.++
T Consensus         4 k~~~~~~~l~~h~~~H~~--------~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQS--------EQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTS--------SCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCC--------CCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            456667778888888776        78899999999999999999999998887543

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.3e-08  Score=61.19  Aligned_cols=36  Identities=25%  Similarity=0.480  Sum_probs=32.0

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQRVHTG--------EKLSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHHC--------CCCCCSCCC
T ss_pred             CCeECcccCchhCCHHHHHHHHHHHcC--------CCCCCCCCC
Confidence            789999999999999999999988876        788999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.5e-08  Score=60.93  Aligned_cols=36  Identities=28%  Similarity=0.647  Sum_probs=32.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQRSHSG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSCC--------SSCCSSCCC
T ss_pred             CCcCCCCCCCcCCChHHHHHHHHHhCC--------CCCCCCCCC
Confidence            789999999999999999999988776        789999887

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.3e-08  Score=60.54  Aligned_cols=38  Identities=21%  Similarity=0.443  Sum_probs=31.6

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||.|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (44)
T 2emb_A            7 GHTRKRYECSKCQATFNLRKHLIQHQKTHAA--------KSGPSSG   44 (44)
T ss_dssp             CCCCSSEECTTTCCEESCHHHHHHHGGGGCC--------CCCTTCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHcCC--------CCCcCCC
Confidence            6778899999999999999999999877765        7788874

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.66  E-value=1.4e-08  Score=61.17  Aligned_cols=36  Identities=28%  Similarity=0.563  Sum_probs=32.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~C   46 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQRMHTR--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGGGCC--------SSCCSCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            889999999999999999999988776        789999887

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1e-08  Score=61.78  Aligned_cols=36  Identities=28%  Similarity=0.517  Sum_probs=31.8

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ytt_A           11 KPYQCSECGKSFSGSYRLTQHWITHTR--------EKPSGPSSG   46 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTHHHH--------CCCCSCCCC
T ss_pred             CCeeCCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCCC
Confidence            789999999999999999999988876        788999887

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.1e-08  Score=61.57  Aligned_cols=38  Identities=26%  Similarity=0.447  Sum_probs=26.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~~~~~C~   44 (46)
T 2en3_A            7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHER--------TDPSGPS   44 (46)
T ss_dssp             SCCCCSEECSSSCCEESSSHHHHHHHHHHHH--------SCCSSCS
T ss_pred             cCCCCCeeCcccChhhCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            5567777777777777777777777766654        5667664

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.3e-08  Score=61.26  Aligned_cols=36  Identities=31%  Similarity=0.616  Sum_probs=32.7

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   46 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQRIHTG--------EKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTTTSS--------SCCCSCCCC
T ss_pred             CCeeCcccCcccCChHHHHHHHHHhCC--------CCCCCCCCC
Confidence            889999999999999999999988776        789999987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.3e-08  Score=61.19  Aligned_cols=38  Identities=24%  Similarity=0.482  Sum_probs=32.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~   44 (46)
T 2eq3_A            7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTG--------KKPSGPS   44 (46)
T ss_dssp             SCCCCSSEETTTTEECSSHHHHHHHHTTSCC--------CCCCCSC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            6788899999999999999999999877765        7788886

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.64  E-value=2.8e-09  Score=68.91  Aligned_cols=47  Identities=21%  Similarity=0.378  Sum_probs=39.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHH
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHL   58 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l   58 (348)
                      |++++||+|+.|++.|.....|.   +.|.+        +++|.|.+|++.|.....+
T Consensus         9 H~~~k~~~C~~C~k~F~~~~~l~---~~H~~--------~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            9 STNRASFKCPVCSSTFTDLEANQ---LFDPM--------TGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHH---HEETT--------TTEEBCSSSCCBCEECTTC
T ss_pred             cCCCCCccCCCCCchhccHHHhH---hhcCC--------CCCEECCCCCCccccCccc
Confidence            78899999999999999888886   55554        7899999999999866543

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1e-08  Score=60.32  Aligned_cols=37  Identities=27%  Similarity=0.557  Sum_probs=29.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC   45 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C   45 (348)
                      |++++||+|.+|++.|.....|..|++.|.+        +++|.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C   42 (42)
T 2ytb_A            6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG--------SGPSSG   42 (42)
T ss_dssp             CCSCCSBCCTTTTCCBSSHHHHHTTGGGTSC--------CSCCCC
T ss_pred             cCCCCCeeCCCccchhCCHHHHHHHHHHhCC--------CCCCCC
Confidence            6778888888888888888888888777765        677776

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.2e-08  Score=60.81  Aligned_cols=38  Identities=26%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS   46 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~   46 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+        +++|.|.
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~--------~~~~~C~   44 (44)
T 2eox_A            7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTR--------KSGPSSG   44 (44)
T ss_dssp             CCCCCCEEETTTTEEESSSHHHHTTHHHHCC--------CCCCSCC
T ss_pred             CCCCCCeECcccCcccCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            6778888888888888888888888888776        6788874

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.61  E-value=4.2e-09  Score=63.46  Aligned_cols=35  Identities=29%  Similarity=0.614  Sum_probs=26.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHTT--------SCSSSSCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            677888888888888888888777765        67777763

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=4.4e-09  Score=63.37  Aligned_cols=35  Identities=26%  Similarity=0.609  Sum_probs=26.8

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQATHSG--------EKPSGPSS   45 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHHHHCC--------CSCSCTTC
T ss_pred             CCeeccccCChhcCHHHHHHHHHHcCC--------CCCCCCCC
Confidence            678888888888888888888877765        67777763

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=4.9e-09  Score=63.18  Aligned_cols=35  Identities=37%  Similarity=0.821  Sum_probs=27.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~--------~~~~~C~~   45 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQKTHTG--------EKPSGPSS   45 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHCC--------CCCCCSCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            778888888888888888888877766        67788764

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=5.1e-09  Score=63.09  Aligned_cols=34  Identities=29%  Similarity=0.618  Sum_probs=25.8

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLRVHTQ--------ETLSGPS   44 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHHHHSS--------CCSSSCC
T ss_pred             CCeECcccChhhCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            677787788888887788888777765        6777775

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=6.5e-09  Score=62.63  Aligned_cols=35  Identities=34%  Similarity=0.674  Sum_probs=26.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRRSHTG--------EKPSGPSS   45 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHHHHSS--------SSCCCCCC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhcCC--------CCCCCCCC
Confidence            677777777777777777777777765        67777763

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=5.1e-09  Score=63.06  Aligned_cols=35  Identities=26%  Similarity=0.651  Sum_probs=27.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|..|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQRIHTG--------ENPSGPSS   45 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHGGGSS--------SCCCSSSC
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            778888888888888888888877665        67788763

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=6.9e-09  Score=62.50  Aligned_cols=35  Identities=26%  Similarity=0.546  Sum_probs=27.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHTS--------SCCCSCCC
T ss_pred             CCEECCccCcccCCHHHHHHHHHHcCC--------CCCCCCCC
Confidence            778888888888888888888877766        67788764

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.4e-08  Score=60.07  Aligned_cols=40  Identities=20%  Similarity=0.306  Sum_probs=31.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |++++||+|.+|++.|.+...|..|++.|.+       .+++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-------~~~~~~C~~   46 (46)
T 2eoy_A            7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR-------GVKSGPSSG   46 (46)
T ss_dssp             CCCSCCEECSSSCCEESSSHHHHHHHTTCCS-------CCTTSSSCC
T ss_pred             cCCCCCEECcCCCCcCCCHHHHHHHHHHcCC-------CCCCCCCCC
Confidence            6788899999999999999999999766542       167888863

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.58  E-value=4e-08  Score=56.70  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=31.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC   45 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C   45 (348)
                      |++++||.|.+|++.|.....|..|++.|.+        +++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRR--------DRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCC--------SCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCC--------Ccccee
Confidence            6789999999999999999999999888776        677765

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3.6e-08  Score=58.64  Aligned_cols=37  Identities=22%  Similarity=0.480  Sum_probs=28.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC   45 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C   45 (348)
                      |++++||.|.+|++.|.....|..|++.|.+        +++|.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~~   43 (44)
T 2epv_A            7 GSGEKPYECNECGKAFIWKSLLIVHERTHAG--------VSGPSS   43 (44)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHGGGSS--------CSCCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHhHhcC--------CCCCCC
Confidence            5677888888888888888888888777665        666765

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.58  E-value=6.4e-09  Score=61.26  Aligned_cols=34  Identities=26%  Similarity=0.668  Sum_probs=25.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   42 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQRTHAG--------ESGPSSG   42 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGCC--------CCSCCCC
T ss_pred             CCccCCCcChhhCCHHHHHHHHHhcCC--------CCCCCCC
Confidence            677777788878777777777776665        6777774

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=4.8e-09  Score=63.21  Aligned_cols=35  Identities=37%  Similarity=0.753  Sum_probs=26.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|..|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRGIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHTTTTT--------SSCCCCSC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHhhCC--------CCCCCCCC
Confidence            678888888888888888888766665        67777763

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=6.5e-09  Score=62.61  Aligned_cols=35  Identities=31%  Similarity=0.601  Sum_probs=27.9

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~~   45 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQKIHTG--------ERPSGPSS   45 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTSC--------CCCSCSCC
T ss_pred             CCEECCccCcccCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            778888888888888888888877765        67888864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=9.9e-09  Score=60.41  Aligned_cols=34  Identities=26%  Similarity=0.556  Sum_probs=24.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   42 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKMHTV--------KSGPSSG   42 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHHTSC--------CSSCCCC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            677777777777777777777766655        5677763

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=5.2e-09  Score=63.03  Aligned_cols=35  Identities=31%  Similarity=0.696  Sum_probs=26.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQRTHTG--------EKPSGPSS   45 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHTSCS--------SSSSCCCC
T ss_pred             CCcCCCCCCcccCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            678888888888888888888877665        67777763

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=5.5e-09  Score=62.94  Aligned_cols=35  Identities=31%  Similarity=0.712  Sum_probs=27.5

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQRVHTG--------EKPSGPSS   45 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGGGGCC--------CCCCCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCC
Confidence            778888888888888888888877665        67888763

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=5.2e-09  Score=63.05  Aligned_cols=35  Identities=34%  Similarity=0.722  Sum_probs=27.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRGIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTTTSC--------SCCSSTTC
T ss_pred             cCeECCCCCcccCChhHHHHHhHhcCC--------CCCCCCCC
Confidence            778888888888888888888877665        67788763

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=4.7e-09  Score=63.26  Aligned_cols=35  Identities=31%  Similarity=0.648  Sum_probs=26.8

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSC--------CCCCSSCC
T ss_pred             CCeECCcCCcccCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            778888888888888888888876665        67787763

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=5.6e-09  Score=62.90  Aligned_cols=35  Identities=34%  Similarity=0.721  Sum_probs=26.7

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|..|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQRVHTG--------EKPSGPSS   45 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGGGGTT--------CCCSSCCC
T ss_pred             cCCCCCCCCcccCCHHHHHHHHHhcCC--------CCCCCCCC
Confidence            678888888888888888888877665        67777763

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=7.2e-09  Score=62.41  Aligned_cols=35  Identities=26%  Similarity=0.677  Sum_probs=25.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~kp~~C~~   45 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHHHHS--------CCCSSSTT
T ss_pred             cCccCCCCCCCcCCHHHHHHHHHhcCC--------CCCCCCCC
Confidence            677777777777777777777777765        66777753

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.56  E-value=9.7e-09  Score=64.25  Aligned_cols=50  Identities=18%  Similarity=0.359  Sum_probs=43.9

Q ss_pred             ccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhhh
Q psy4065          13 NQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELL   70 (348)
Q Consensus        13 ~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   70 (348)
                      ++.|.....|..|++.|.+        +++|.|..|++.|.....|..|+++|.++.+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~--------~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQS--------EQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTS--------SCCEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             ccccCCCcchhhHHHhcCC--------CCCccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            3568888889999888876        7899999999999999999999999988754

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=6.5e-09  Score=62.61  Aligned_cols=35  Identities=31%  Similarity=0.650  Sum_probs=26.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQRVHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHTTTSS--------SCCCCTTC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCC--------CCCCCCCC
Confidence            678888888888888888888776665        67777763

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=6.3e-09  Score=62.67  Aligned_cols=35  Identities=26%  Similarity=0.588  Sum_probs=27.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQVIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHTTTCC--------SCCSSCCC
T ss_pred             CCeECCcCChhhCCHHHHHHHHHHhCC--------CCCCCCCC
Confidence            778888888888888888888877665        67788763

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.1e-08  Score=61.65  Aligned_cols=34  Identities=24%  Similarity=0.643  Sum_probs=25.9

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~   44 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRVHTG--------ERSSGPS   44 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHCSS--------CCSCSTT
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            677888888888888888888777665        6777775

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=8e-09  Score=61.52  Aligned_cols=34  Identities=24%  Similarity=0.611  Sum_probs=23.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQRTHTG--------ESGPSSG   44 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHTTT--------SSCSCCC
T ss_pred             CCeECCCCCcccCCHhHHHHHHHHhCC--------CCCCCCC
Confidence            667777777777777777777766655        5666663

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=1.4e-08  Score=68.30  Aligned_cols=57  Identities=23%  Similarity=0.413  Sum_probs=50.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      |.+++||.|.+|+..| ....|..|. .+.+        .++|.|+.|++.|. ...|..|+++|.++
T Consensus        12 ~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~--------~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A           12 ECPLRLAVCQHCDLEL-SILKLKEHE-DYCG--------ARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCCCCEECSSSCCEE-CHHHHHHHH-HHHH--------HCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             cCCCcccCCcccChHh-hHHHHHHHH-hHcC--------CCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            5678999999999999 499999997 7766        89999999999987 48999999988776

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=8.6e-09  Score=62.05  Aligned_cols=35  Identities=29%  Similarity=0.616  Sum_probs=26.7

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQRIHRG--------EKPSGPSS   45 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHGGGCS--------CCCCSCCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHhHhCC--------CCCCCCCC
Confidence            678888888888888888888877665        67777763

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=5.9e-09  Score=62.78  Aligned_cols=35  Identities=29%  Similarity=0.689  Sum_probs=26.8

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|..|++.|.....|..|++.|.+        +++|.|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSS--------CCSSCSCC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCC--------CCCCCCCC
Confidence            678888888888888888888876665        67787763

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=5.9e-09  Score=62.78  Aligned_cols=35  Identities=37%  Similarity=0.791  Sum_probs=27.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~p~~C~~   45 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGGTSS--------CCSSCCCC
T ss_pred             cCEECCCCChhhCChHHHHHHHHhcCC--------CCCcCCCC
Confidence            778888888888888888888876665        67788763

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=1.8e-09  Score=72.63  Aligned_cols=54  Identities=24%  Similarity=0.441  Sum_probs=49.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      +++.|..|++.|. ...|..|+ .+.+        .++|.|+.|++.|. ...|..|+++|.++.
T Consensus        16 r~~~C~~C~~~~~-~~~L~~H~-~~c~--------~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A           16 RLAVCQHCDLELS-ILKLKEHE-DYCG--------ARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCEECSSSCCEEC-HHHHHHHH-HHHH--------HCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             cccCCcccChHhh-HHHHHHHH-hHcC--------CCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            8999999999995 89999999 8887        89999999999987 599999999998864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=8e-09  Score=61.52  Aligned_cols=34  Identities=24%  Similarity=0.540  Sum_probs=25.8

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTRTHTG--------ESGPSSG   44 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHTTTCC--------SSSSCCC
T ss_pred             cCeECCCCCCccCCHHHHHHHhhhcCC--------CCCCCCC
Confidence            678888888888888888888866655        6777774

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.52  E-value=8.5e-10  Score=71.37  Aligned_cols=43  Identities=23%  Similarity=0.459  Sum_probs=36.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHH
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHL  166 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L  166 (348)
                      ++|.|..|++.|.....|.   +.|.+        +++|.|.+|++.|.....+
T Consensus        13 k~~~C~~C~k~F~~~~~l~---~~H~~--------~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A           13 ASFKCPVCSSTFTDLEANQ---LFDPM--------TGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHH---HEETT--------TTEEBCSSSCCBCEECTTC
T ss_pred             CCccCCCCCchhccHHHhH---hhcCC--------CCCEECCCCCCccccCccc
Confidence            8999999999999988886   46655        7899999999999776544

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=9.6e-09  Score=61.16  Aligned_cols=34  Identities=32%  Similarity=0.618  Sum_probs=25.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKTHSG--------QSGPSSG   44 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTTSSS--------SCSCCCC
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHHcCC--------CCCCCCC
Confidence            677888888888888888888766655        6677774

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=4.3e-08  Score=58.88  Aligned_cols=30  Identities=50%  Similarity=1.058  Sum_probs=28.5

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065          39 EAKPFSCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus        39 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      ++++|.|..|++.|.+...|..|++.|.++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2emz_A            9 GERPFKCNECGKGFGRRSHLAGHLRLHSRE   38 (46)
T ss_dssp             CCCSCCCSSSCCCCSSHHHHHHHHHHHHHT
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhCCC
Confidence            378999999999999999999999999998

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=1.1e-08  Score=61.63  Aligned_cols=34  Identities=26%  Similarity=0.633  Sum_probs=26.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|..|++.|.....|..|++.|.+        +++|.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~   44 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQAIHTG--------KKPSGPS   44 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHTTSCC--------CCCCCSC
T ss_pred             CCeECCCCChhhCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            678888888888888888888876665        6777775

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=1.4e-07  Score=55.70  Aligned_cols=35  Identities=29%  Similarity=0.477  Sum_probs=28.2

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|..|++.|.....|..|++.|.+        +++|.|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   43 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQTHS--------DKSGPSSG   43 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHHHTC--------TTCSSSCC
T ss_pred             CCEECCCCCCeeCChHHHHHHHHhhCC--------CCCccCCC
Confidence            778888888888888888888877776        67888863

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=1.1e-08  Score=60.88  Aligned_cols=34  Identities=24%  Similarity=0.555  Sum_probs=24.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|..|++.|.....|..|++.|.+        +++|.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C~   44 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQKTHAA--------KSGPSSG   44 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGGGGCC--------CCCTTCC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCC--------CCCcCCC
Confidence            677777777777777777777766655        6677764

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=3.4e-08  Score=59.37  Aligned_cols=27  Identities=30%  Similarity=0.753  Sum_probs=15.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                      ++|.|.+|++.|.....|..|++.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQSHTG   37 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHTC
T ss_pred             CCEECcccCCccCCHhHHHHHHHHcCC
Confidence            555555555555555555555555544

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=8.2e-09  Score=60.76  Aligned_cols=33  Identities=30%  Similarity=0.693  Sum_probs=22.5

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC  153 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C  153 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C   42 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIRVHTG--------SGPSSG   42 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGGGTSC--------CSCCCC
T ss_pred             CCeeCCCccchhCCHHHHHHHHHHhCC--------CCCCCC
Confidence            667777777777777777777766554        566665

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.5e-08  Score=59.61  Aligned_cols=33  Identities=24%  Similarity=0.591  Sum_probs=23.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC  153 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C  153 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~~~~~C   42 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLRIHTG--------SGPSSG   42 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTTTTSC--------CSSTTC
T ss_pred             CCEECCCCCCccCCHHHHHHHHHhcCC--------CCCCCC
Confidence            667777777777777777777766655        566665

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.6e-07  Score=56.38  Aligned_cols=35  Identities=26%  Similarity=0.536  Sum_probs=27.8

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRRIHTG--------EKPSGPSS   45 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHHHHSS--------CCCSSCCC
T ss_pred             CCcCCCCCCCeeCChHHHHHHHHHhCC--------CCCCCCCC
Confidence            778888888888888888888877766        67888863

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.6e-07  Score=53.58  Aligned_cols=31  Identities=19%  Similarity=0.174  Sum_probs=23.3

Q ss_pred             CCCCCcccccc--cccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~--C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +.++|||+|.+  |++.|.+...|..|+++|.+
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            45677888865  88888888888888777765

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=1e-07  Score=57.26  Aligned_cols=35  Identities=31%  Similarity=0.711  Sum_probs=27.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~   45 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHSVHSG--------ERPSGPSS   45 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTTTTTS--------CCSCTTSC
T ss_pred             cccCCCCCCcccCcHHHHHHHHHhcCC--------CCCCCCCC
Confidence            778888888888888888888877665        67888863

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.42  E-value=2.4e-07  Score=59.48  Aligned_cols=25  Identities=28%  Similarity=0.665  Sum_probs=14.2

Q ss_pred             CCCCcccccc--cccccCChHHHHHHH
Q psy4065           2 DVVRPFQCDV--CNQGFVRKEHLVRHR   26 (348)
Q Consensus         2 ~~~~~y~C~~--C~~~f~~~~~l~~H~   26 (348)
                      +++|||+|.+  |++.|.+...|..|+
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~   49 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHY   49 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHH
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHh
Confidence            4555666643  666666666666664

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=1.1e-07  Score=56.76  Aligned_cols=35  Identities=31%  Similarity=0.592  Sum_probs=28.0

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~~   45 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQRIHTG--------EKSGPSSG   45 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHTTTSS--------CCCCCSCC
T ss_pred             cCccCCCCCCccCChHHHHHHHHHhCC--------CCCCCCCC
Confidence            788888888888888888888877665        67888864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=3.7e-08  Score=58.57  Aligned_cols=27  Identities=30%  Similarity=0.795  Sum_probs=14.3

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                      ++|.|.+|++.|.....|..|++.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHERTHAR   37 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHHHCCC
T ss_pred             CCeECCCCCchhCCHHHHHHHhHhcCC
Confidence            455555555555555555555544443

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.42  E-value=2e-07  Score=52.05  Aligned_cols=31  Identities=23%  Similarity=0.442  Sum_probs=24.0

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |.+++||.|..|++.|.....|..|++.|++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHG   32 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcC
Confidence            5677788888888888888888888777665

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=3.7e-08  Score=57.85  Aligned_cols=31  Identities=39%  Similarity=0.772  Sum_probs=16.3

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhhcc
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      +++|.|.+|++.|.+...|..|+++|.++.+
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2en2_A            9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP   39 (42)
T ss_dssp             SCSEECTTTCCEESSHHHHHHHTHHHHSCCS
T ss_pred             CCCEeCCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            4455555555555555555555555554443

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=4.3e-08  Score=58.30  Aligned_cols=31  Identities=35%  Similarity=0.662  Sum_probs=16.9

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhhcc
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      +++|.|.+|++.|.+...|..|+++|.++.+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (44)
T 2epv_A           10 EKPYECNECGKAFIWKSLLIVHERTHAGVSG   40 (44)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGGGSSCSC
T ss_pred             CcCeECCCCCcccCchHHHHHHHhHhcCCCC
Confidence            4555555555555555555555555555443

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=4.8e-08  Score=58.69  Aligned_cols=34  Identities=32%  Similarity=0.601  Sum_probs=21.3

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhhccccc
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS  181 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~  181 (348)
                      +++|.|.+|++.|.+...|..|+++|.++.++.+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A           10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             CCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            5666666666666666666666666666555443

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.40  E-value=5.3e-08  Score=57.15  Aligned_cols=27  Identities=22%  Similarity=0.720  Sum_probs=14.7

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                      ++|.|.+|++.|.....|..|++.|.+
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRSCSQ   36 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTTC
T ss_pred             CCeECCCCCcccCCHHHHHHHhhhcCC
Confidence            455555555555555555555554443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=2.3e-07  Score=52.62  Aligned_cols=31  Identities=26%  Similarity=0.522  Sum_probs=21.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |++++||+|..|++.|.....|..|++.|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~   34 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHP   34 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCS
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcC
Confidence            5666777777777777777777777666654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.39  E-value=2.1e-07  Score=52.07  Aligned_cols=31  Identities=35%  Similarity=0.625  Sum_probs=24.8

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |++++||+|.+|++.|.....|..|++.|++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   32 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCC
Confidence            6778888888888888888888888777665

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=1.7e-07  Score=56.70  Aligned_cols=36  Identities=36%  Similarity=0.667  Sum_probs=32.2

Q ss_pred             cCcccC--cchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccc
Q psy4065         113 RPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC  156 (348)
Q Consensus       113 ~~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C  156 (348)
                      ++|.|.  .|++.|.....|..|++.|.+        +++|.|.+|
T Consensus        11 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~~C   48 (48)
T 2ent_A           11 KPFACTWPGCGWRFSRSDELSRHRRSHSG--------VKPSGPSSG   48 (48)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHTTSCC--------CCSCSSCCC
T ss_pred             CCeECCCCCCCCccCCHHHHHHHHHHhCC--------CCCCCCCCC
Confidence            889998  899999999999999987766        789999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=3.3e-07  Score=54.29  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=24.8

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C~   44 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQALHAG--------ESGPSSG   44 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHHHTT--------SCCCCCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHHCC--------CCCCCCC
Confidence            677777777777777777777777665        6677763

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=2.1e-07  Score=52.76  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=29.1

Q ss_pred             CCCCCCCCcchhhHHhhhhhHHHHHHHHHhcCC
Q psy4065         281 ERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNI  313 (348)
Q Consensus       281 ~~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~~  313 (348)
                      .+.++++|.|.+|++.|.....|..|++.|++.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            356788999999999999999999999987653

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.35  E-value=1.8e-07  Score=52.47  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=19.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHH
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHR   26 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~   26 (348)
                      +.++|||+|..|++.|.....|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            35677888888888888888887774

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.35  E-value=2.5e-07  Score=59.36  Aligned_cols=42  Identities=24%  Similarity=0.403  Sum_probs=36.2

Q ss_pred             CCCCCCCCcchh--hHHhhhhhHHHHHHHHHhcCCCCCCCcccC
Q psy4065         281 ERPPKPIPKCDV--CKKVFSRRSHLLRHLKRLHNIDPPPSSRNK  322 (348)
Q Consensus       281 ~~~~~~~y~C~~--C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~  322 (348)
                      ..++++||+|.+  |+++|.....|..|++..|..++|..+...
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~   64 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEV   64 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccc
Confidence            447889999976  999999999999999888999999776543

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=3.8e-08  Score=58.47  Aligned_cols=27  Identities=33%  Similarity=0.764  Sum_probs=13.5

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCC
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                      ++|.|.+|++.|.....|..|++.|.+
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~   37 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQKIHTR   37 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHHHHCC
T ss_pred             CCeECcccCcccCCHHHHHHHHHHhCC
Confidence            445555555555555555555544443

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=1.1e-07  Score=54.18  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=28.4

Q ss_pred             CCCCCCCcchh--hHHhhhhhHHHHHHHHHhcCC
Q psy4065         282 RPPKPIPKCDV--CKKVFSRRSHLLRHLKRLHNI  313 (348)
Q Consensus       282 ~~~~~~y~C~~--C~~~f~~~~~L~~H~~~~H~~  313 (348)
                      +.+++||+|.+  |+++|..+..|.+|++.|.+.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            46789999987  999999999999999987654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=2e-07  Score=54.33  Aligned_cols=33  Identities=27%  Similarity=0.558  Sum_probs=23.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC  153 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C  153 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~--------~k~~~C   41 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHERIHTG--------SGPSSG   41 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGGGCCC--------CSCSCC
T ss_pred             CCeECCCCCCCcCCHHHHHHHHHHhCC--------CCCcCC
Confidence            667777777777777777777766654        566665

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.34  E-value=3.2e-07  Score=51.98  Aligned_cols=30  Identities=43%  Similarity=0.882  Sum_probs=18.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h   30 (348)
                      |++++||+|+.|++.|.....|..|++.|.
T Consensus         6 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            6 STGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            455666666666666666666666655554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.33  E-value=1.4e-07  Score=52.80  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=28.1

Q ss_pred             CCCCCCCcchhhHHhhhhhHHHHHHHHHhcCC
Q psy4065         282 RPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNI  313 (348)
Q Consensus       282 ~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~~  313 (348)
                      +.+.++|.|.+|++.|.+...|..|++.|++.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            35678999999999999999999999987653

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=3.9e-07  Score=51.24  Aligned_cols=31  Identities=19%  Similarity=0.393  Sum_probs=22.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |.+++||+|..|++.|.....|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            5667777777777777777777777766654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.32  E-value=1.2e-07  Score=53.87  Aligned_cols=28  Identities=39%  Similarity=0.887  Sum_probs=22.2

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhh
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      +++|.|+.|++.|.+...|..|+++|.+
T Consensus         9 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            9 IKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            6778888888888888888888877765

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=2.3e-07  Score=55.63  Aligned_cols=34  Identities=32%  Similarity=0.763  Sum_probs=25.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      ++|.|.+|++.|.....|..|++.|.+        +++|.|+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~--------~k~~~C~   44 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQRVHSG--------EKPSGPS   44 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGGGSCC--------SCCCCCC
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHHhCC--------CCCCCCC
Confidence            677787788887777777777766655        6777775

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.31  E-value=5.2e-07  Score=49.72  Aligned_cols=27  Identities=30%  Similarity=0.609  Sum_probs=20.5

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |||.|.+|++.|.....|..|++.|.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~   27 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHEL   27 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTT
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCC
Confidence            577788888888777788888777665

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.31  E-value=1.7e-07  Score=52.45  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=27.6

Q ss_pred             CCCCCCCcchhhHHhhhhhHHHHHHHHHhcC
Q psy4065         282 RPPKPIPKCDVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       282 ~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      +.++++|.|.+|++.|.....|..|++.|++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   32 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCC
Confidence            4567899999999999999999999988664

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=4.2e-07  Score=51.16  Aligned_cols=31  Identities=26%  Similarity=0.498  Sum_probs=22.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |.+++||+|.+|++.|.....|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            5667777777777777777777777666654

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=6.6e-08  Score=58.06  Aligned_cols=24  Identities=25%  Similarity=0.667  Sum_probs=12.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHH
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKR  136 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~  136 (348)
                      ++|.|.+|++.|.....|..|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHERI   34 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHTT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHHH
Confidence            455555555555555555555533

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=4.2e-07  Score=51.55  Aligned_cols=31  Identities=19%  Similarity=0.369  Sum_probs=23.2

Q ss_pred             CCCCCcccccccccccCChHHHHHH-HHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRH-RKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H-~~~~h~   31 (348)
                      |++++||+|..|++.|.....|..| ++.|.+
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            6677888888888888888888888 555543

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.27  E-value=9.6e-07  Score=57.12  Aligned_cols=30  Identities=17%  Similarity=0.371  Sum_probs=17.1

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      ..+|||+|.+|++.|.....|..|+++|.+
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            445555555555555555555555555544

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=7.4e-07  Score=50.04  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=22.4

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |.+++||.|.+|++.|.....|..|++.|.+
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            5667777777777777777777777766654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.26  E-value=1.7e-07  Score=56.86  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=27.6

Q ss_pred             CCCCCCCcchhhHHhhhhhHHHHHHHHHhcCCC
Q psy4065         282 RPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNID  314 (348)
Q Consensus       282 ~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~~~  314 (348)
                      +.++++|.|.+|++.|.+...|..|++..|.++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            467889999999999999999999999445444

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.25  E-value=7.3e-07  Score=50.82  Aligned_cols=31  Identities=29%  Similarity=0.673  Sum_probs=24.4

Q ss_pred             CCCCCccccc--ccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCD--VCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~--~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |++++||+|.  .|++.|.....|..|++.|.+
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   33 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEM   33 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCC
Confidence            6778888888  488888888888888777765

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=7.3e-07  Score=50.10  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=21.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |.+++||+|..|++.|.....|..|++.|.+
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            4566777777777777777777777666654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=5.1e-07  Score=50.77  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=21.3

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |.+++||+|..|++.|.....|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            4566777777777777777777777665543

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.23  E-value=5.8e-07  Score=54.40  Aligned_cols=31  Identities=23%  Similarity=0.541  Sum_probs=24.6

Q ss_pred             CCCCCcccccccccccCChHHHHHHHH-HhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRK-RAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~-~~h~   31 (348)
                      |+++|||+|.+|++.|.....|..|++ .|.+
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCC
Confidence            677888888888888888888888877 5554

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=6.2e-07  Score=50.77  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=19.5

Q ss_pred             CCCCCcccccccccccCCh-HHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRK-EHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~-~~l~~H~~~~h~   31 (348)
                      |++++||+|..|++.|... ..|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            4556666666666666666 666666665543

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.21  E-value=1.1e-06  Score=48.40  Aligned_cols=28  Identities=36%  Similarity=0.714  Sum_probs=13.6

Q ss_pred             CccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      ||.|.+|++.|.....|..|+++|.++.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~   29 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLG   29 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            3445555555555555555544444443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.18  E-value=4.5e-07  Score=48.45  Aligned_cols=29  Identities=24%  Similarity=0.415  Sum_probs=26.0

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHhcCCC
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRLHNID  314 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~H~~~  314 (348)
                      ++|.|.+|++.|.....|..|++.|++.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            46999999999999999999999988654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.18  E-value=9e-07  Score=50.79  Aligned_cols=31  Identities=26%  Similarity=0.687  Sum_probs=17.6

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhhcc
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      +++|.|.+|++.|.+...|..|+++|.++.+
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   34 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA   34 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CCceECCCCCcccCCHHHHHHHHHHcCCCcc
Confidence            4555555555555555555555555555543

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.18  E-value=3.3e-07  Score=63.43  Aligned_cols=36  Identities=19%  Similarity=0.502  Sum_probs=27.5

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhhhhhccc
Q psy4065          39 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSM   74 (348)
Q Consensus        39 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~   74 (348)
                      ++++|.|..|++.|.....|..|+++|.++.++.|.
T Consensus        22 ~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~   57 (88)
T 1x6f_A           22 QNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAK   57 (88)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccc
Confidence            367788888888888888888888888877766554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.15  E-value=1.1e-06  Score=45.66  Aligned_cols=26  Identities=23%  Similarity=0.561  Sum_probs=17.7

Q ss_pred             CCcccccccccccCChHHHHHHHHHh
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~   29 (348)
                      ++||.|..|++.|.....|..|++.|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            35677777777777777777776554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.14  E-value=1.8e-06  Score=55.82  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=31.1

Q ss_pred             CCCCCCCCcchhhHHhhhhhHHHHHHHHHhcCCCCC
Q psy4065         281 ERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDPP  316 (348)
Q Consensus       281 ~~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~~~~p  316 (348)
                      .+.++++|+|.+|++.|.+...|..|++.|.+...+
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~   42 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ   42 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCccc
Confidence            356789999999999999999999999998875443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.11  E-value=4.2e-07  Score=47.45  Aligned_cols=25  Identities=12%  Similarity=0.371  Sum_probs=23.3

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHh
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      ++|.|.+|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            6799999999999999999999875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.11  E-value=1.2e-06  Score=45.98  Aligned_cols=27  Identities=30%  Similarity=0.742  Sum_probs=19.1

Q ss_pred             CCcccccccccccCChHHHHHHHHHhc
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h   30 (348)
                      ++||.|..|++.|.....|..|++.|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            467777777777777777777766543

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.39  E-value=3.8e-07  Score=47.11  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=23.1

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHh
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      ++|.|.+|++.|.+...|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4799999999999999999999875

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.10  E-value=9.7e-07  Score=46.01  Aligned_cols=26  Identities=19%  Similarity=0.581  Sum_probs=17.2

Q ss_pred             CCcccccccccccCChHHHHHHHHHh
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~   29 (348)
                      ++||+|..|++.|.....|..|++.|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            35677777777777777777775543

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=2.6e-06  Score=47.67  Aligned_cols=30  Identities=27%  Similarity=0.579  Sum_probs=23.1

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         147 EAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      .+++|.|.+|++.|.....|..|+++|.++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            467788888888888888888888777654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=2.4e-06  Score=47.89  Aligned_cols=30  Identities=37%  Similarity=0.751  Sum_probs=22.6

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         147 EAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      .+++|.|.+|++.|.....|..|+++|.++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            467788888888888888888887777654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=3.3e-06  Score=47.27  Aligned_cols=30  Identities=30%  Similarity=0.769  Sum_probs=22.6

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         147 EAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      .+++|.|.+|++.|.+...|..|+++|.++
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            467788888888888888888887777654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=2.4e-06  Score=47.90  Aligned_cols=30  Identities=33%  Similarity=0.719  Sum_probs=22.8

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         147 EAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      .+++|.|.+|++.|.+...|..|+++|.++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            467788888888888888888888777654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=2.1e-06  Score=48.15  Aligned_cols=30  Identities=20%  Similarity=0.571  Sum_probs=23.2

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         147 EAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      .+++|.|.+|++.|.....|..|+++|.++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            6 SGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            467788888888888888888888777654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.08  E-value=2.2e-06  Score=45.26  Aligned_cols=27  Identities=48%  Similarity=1.042  Sum_probs=17.6

Q ss_pred             CccccccccccCCHHHHHHHHHHhhhh
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +|.|.+|++.|.+...|..|+++|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            566666666666666666666666543

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.06  E-value=2.5e-06  Score=48.23  Aligned_cols=31  Identities=16%  Similarity=0.386  Sum_probs=19.1

Q ss_pred             CCCCCcccccc--cccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~--C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |++++||.|.+  |++.|.....|..|++.|.+
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            45566666663  66666666666666665543

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=1.2e-06  Score=49.60  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=28.2

Q ss_pred             CCCCCCCCcchhhHHhhhhh-HHHHHHHHHhcC
Q psy4065         281 ERPPKPIPKCDVCKKVFSRR-SHLLRHLKRLHN  312 (348)
Q Consensus       281 ~~~~~~~y~C~~C~~~f~~~-~~L~~H~~~~H~  312 (348)
                      .+.++++|+|.+|++.|... ..|..|++.|.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            35677899999999999999 999999988764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=2.3e-06  Score=45.12  Aligned_cols=28  Identities=46%  Similarity=0.949  Sum_probs=20.4

Q ss_pred             CCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ++|.|.+|++.|.....|..|+++|.++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            3677777777777777777777777654

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.05  E-value=2.4e-06  Score=44.38  Aligned_cols=25  Identities=36%  Similarity=0.749  Sum_probs=15.9

Q ss_pred             CCccccccccccCCHHHHHHHHHHh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h  173 (348)
                      ++|.|..|++.|.+...|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4566666666666666666666655

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.31  E-value=5.8e-07  Score=47.69  Aligned_cols=27  Identities=26%  Similarity=0.579  Sum_probs=24.4

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHhcC
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      ++|.|.+|++.|.....|..|++.|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            469999999999999999999988764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.04  E-value=1.1e-06  Score=49.21  Aligned_cols=25  Identities=28%  Similarity=0.246  Sum_probs=23.8

Q ss_pred             CCCCCCcchhhHHhhhhhHHHHHHH
Q psy4065         283 PPKPIPKCDVCKKVFSRRSHLLRHL  307 (348)
Q Consensus       283 ~~~~~y~C~~C~~~f~~~~~L~~H~  307 (348)
                      .+++||+|..|+++|.+.+.|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            5789999999999999999999998

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.03  E-value=1.8e-06  Score=45.28  Aligned_cols=26  Identities=42%  Similarity=1.087  Sum_probs=16.1

Q ss_pred             CCccccccccccCCHHHHHHHHHHhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~  174 (348)
                      ++|.|.+|++.|.+...|..|+++|.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            45666666666666666666665553

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.03  E-value=2.4e-06  Score=45.43  Aligned_cols=27  Identities=33%  Similarity=0.842  Sum_probs=16.5

Q ss_pred             CCccccccccccCCHHHHHHHHHHhhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      ++|.|..|++.|.....|..|+++|.+
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            456666666666666666666666554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.02  E-value=1.8e-06  Score=45.60  Aligned_cols=28  Identities=36%  Similarity=0.742  Sum_probs=19.5

Q ss_pred             CCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ++|.|..|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            3577777777777777777777776553

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.02  E-value=2.9e-06  Score=45.07  Aligned_cols=28  Identities=29%  Similarity=0.738  Sum_probs=20.8

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcC
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      ++||.|..|++.|.....|..|++.|.+
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            4677888888888877888888776654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.00  E-value=4.7e-06  Score=43.91  Aligned_cols=27  Identities=44%  Similarity=0.986  Sum_probs=18.6

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +||.|..|++.|.....|..|++.|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcC
Confidence            467777777777777777777666654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.25  E-value=8.3e-07  Score=47.42  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHhcC
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      ++|.|.+|++.|.+...|..|++.|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            579999999999999999999998764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.98  E-value=2.3e-06  Score=44.38  Aligned_cols=26  Identities=31%  Similarity=0.924  Sum_probs=15.5

Q ss_pred             CccccccccccCCHHHHHHHHHHhhh
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      +|.|.+|++.|.+...|..|+++|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            35666666666666666666665543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.98  E-value=1.3e-06  Score=45.30  Aligned_cols=26  Identities=35%  Similarity=0.659  Sum_probs=23.1

Q ss_pred             CCcchhhHHhhhhhHHHHHHHHHhcC
Q psy4065         287 IPKCDVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       287 ~y~C~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      +|.|.+|++.|.+...|..|++.|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            48999999999999999999988753

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.98  E-value=3.1e-06  Score=44.56  Aligned_cols=28  Identities=32%  Similarity=0.693  Sum_probs=20.3

Q ss_pred             CCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ++|.|..|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            3677777777777777777777777654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=1.4e-06  Score=49.35  Aligned_cols=29  Identities=28%  Similarity=0.497  Sum_probs=21.9

Q ss_pred             CCCccccccccccCCHHHHHHH-HHHhhhh
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRH-QQIHARE  176 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~  176 (348)
                      ++||.|..|++.|.+...|..| +++|.++
T Consensus         7 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            7 GHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            6778888888888888888888 6777553

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.97  E-value=3.9e-06  Score=44.58  Aligned_cols=27  Identities=15%  Similarity=0.423  Sum_probs=17.7

Q ss_pred             CccccccccccCCHHHHHHHHHHhhhh
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +|.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            566666666666666666666666554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.95  E-value=4.2e-07  Score=49.69  Aligned_cols=31  Identities=29%  Similarity=0.372  Sum_probs=26.1

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHhcCCCCCC
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRLHNIDPPP  317 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~H~~~~p~  317 (348)
                      ++|.|.+|++.|.....|..|++. |..++|.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT-AFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS-SSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH-HccCCCC
Confidence            479999999999999999999977 4555553

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.95  E-value=2.2e-06  Score=45.71  Aligned_cols=29  Identities=31%  Similarity=0.781  Sum_probs=23.9

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHhcCCC
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRLHNID  314 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~H~~~  314 (348)
                      ++|.|..|++.|.+...|..|+...|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            46999999999999999999954455443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.94  E-value=3.4e-06  Score=44.47  Aligned_cols=27  Identities=30%  Similarity=0.610  Sum_probs=18.6

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +||.|..|++.|.....|..|++.|.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcC
Confidence            467777777777777777777666554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.17  E-value=1.3e-06  Score=45.02  Aligned_cols=25  Identities=28%  Similarity=0.832  Sum_probs=16.0

Q ss_pred             CcccccccccccCChHHHHHHHHHh
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~   29 (348)
                      |||.|..|++.|.....|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4666666666666666666665543

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.16  E-value=1.3e-06  Score=46.21  Aligned_cols=27  Identities=41%  Similarity=0.811  Sum_probs=17.0

Q ss_pred             CccccccccccCCHHHHHHHHHHhhhh
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +|.|..|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            566666666666666666666666543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.13  E-value=1.5e-06  Score=46.34  Aligned_cols=28  Identities=39%  Similarity=0.833  Sum_probs=17.7

Q ss_pred             CCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ++|.|..|++.|.+...|..|+++|.++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4566666666666666666666666543

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.89  E-value=1e-05  Score=45.60  Aligned_cols=30  Identities=37%  Similarity=0.797  Sum_probs=24.3

Q ss_pred             CCCCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065         147 EAKPFSCSV--CGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       147 ~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ++++|.|.+  |++.|.....|..|+++|.++
T Consensus         5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            467888885  888888888888888888765

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.88  E-value=5.8e-06  Score=43.46  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=16.9

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +||.|..|++.|.....|..|++.|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            456666666666666666666665543

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.88  E-value=6.9e-06  Score=43.19  Aligned_cols=27  Identities=26%  Similarity=0.609  Sum_probs=15.5

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +||.|.+|++.|.....|..|++.|.+
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcC
Confidence            355666666666666666666555543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.87  E-value=5.8e-06  Score=44.47  Aligned_cols=27  Identities=52%  Similarity=1.123  Sum_probs=16.7

Q ss_pred             Ccccc--ccccccCCHHHHHHHHHHhhhh
Q psy4065         150 PFSCS--VCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       150 ~~~C~--~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ||.|.  .|++.|.+...|..|+++|.++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            56665  5666666666666666666543

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.87  E-value=6.3e-06  Score=44.67  Aligned_cols=28  Identities=39%  Similarity=0.897  Sum_probs=19.4

Q ss_pred             CCcccc--ccccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCS--VCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~--~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ++|.|.  .|++.|.+...|..|+++|.++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            467777  6777777777777777776654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.86  E-value=1.1e-05  Score=45.66  Aligned_cols=31  Identities=42%  Similarity=0.833  Sum_probs=23.2

Q ss_pred             CCCcccc--ccccccCCHHHHHHHHHHhhhhcc
Q psy4065         148 AKPFSCS--VCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       148 ~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      +++|.|.  .|++.|.+...|..|+++|.++.+
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            5778887  488888888888888877776644

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.81  E-value=6.3e-07  Score=48.95  Aligned_cols=27  Identities=33%  Similarity=0.659  Sum_probs=20.6

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +||+|..|++.|.....|..|++.|.+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~   27 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFI   27 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHcc
Confidence            578888888888888888888766654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.81  E-value=1e-05  Score=43.74  Aligned_cols=28  Identities=43%  Similarity=1.030  Sum_probs=20.1

Q ss_pred             CCccccc--ccccccCChHHHHHHHHHhcC
Q psy4065           4 VRPFQCD--VCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         4 ~~~y~C~--~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      ++||.|.  .|++.|.....|..|++.|.+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            4677777  677777777777777666654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.80  E-value=9.8e-06  Score=55.91  Aligned_cols=55  Identities=16%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhh
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   67 (348)
                      |++++||+|..|++.|.....|..|++.|.+        +++|+|..|.    ....|..|.+.|.+
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~--------ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNE--------EFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHHHHH--------HHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHHhCC--------CCCcccchhh----hHHHHHhhhccccc
Confidence            6789999999999999999999999998876        7899998764    34455566665554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.77  E-value=1.3e-05  Score=43.06  Aligned_cols=27  Identities=37%  Similarity=0.906  Sum_probs=19.0

Q ss_pred             Cccccc--ccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCD--VCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~--~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +||.|.  .|++.|.....|..|++.|.+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            467776  777777777777777666654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.75  E-value=7e-06  Score=43.63  Aligned_cols=27  Identities=44%  Similarity=1.019  Sum_probs=17.3

Q ss_pred             CccccccccccCCHHHHHHH-HHHhhhh
Q psy4065         150 PFSCSVCGKTFTRREHLRRH-QQIHARE  176 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H-~~~h~~~  176 (348)
                      +|.|..|++.|.+...|..| +++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            56677777777776777766 4555543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.74  E-value=6.2e-06  Score=49.44  Aligned_cols=29  Identities=45%  Similarity=0.791  Sum_probs=15.9

Q ss_pred             CCCcccc--ccccccCCHHHHHHHHHHhhhh
Q psy4065          40 AKPFSCS--VCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus        40 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      +++|.|.  .|++.|.....|.+|++.|.++
T Consensus        16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            4555553  3555555555555555555543

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.64  E-value=2.3e-05  Score=41.03  Aligned_cols=25  Identities=28%  Similarity=0.627  Sum_probs=16.7

Q ss_pred             Cccccc--ccccccCChHHHHHHHHHh
Q psy4065           5 RPFQCD--VCNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         5 ~~y~C~--~C~~~f~~~~~l~~H~~~~   29 (348)
                      +||.|.  .|++.|.....|..|++.|
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            466676  7777777777777776554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.61  E-value=2.6e-05  Score=40.87  Aligned_cols=25  Identities=40%  Similarity=1.002  Sum_probs=16.6

Q ss_pred             Ccccc--ccccccCCHHHHHHHHHHhh
Q psy4065         150 PFSCS--VCGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       150 ~~~C~--~C~~~f~~~~~L~~H~~~h~  174 (348)
                      +|.|.  .|++.|.....|..|+++|.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            56666  66666666666666666654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.59  E-value=3.9e-06  Score=50.36  Aligned_cols=29  Identities=45%  Similarity=0.791  Sum_probs=24.0

Q ss_pred             CCCcccc--ccccccCCHHHHHHHHHHhhhh
Q psy4065         148 AKPFSCS--VCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       148 ~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +++|.|.  .|++.|.....|..|+++|.++
T Consensus        16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            7888885  6888888888888888888765

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00026  Score=45.33  Aligned_cols=59  Identities=17%  Similarity=0.290  Sum_probs=43.9

Q ss_pred             cccc--ccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc--cccccCCHHHHHHHHHHhh
Q psy4065           7 FQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHA   66 (348)
Q Consensus         7 y~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   66 (348)
                      |.|.  .|++.|.+...|..|+...|.... .......|.|.+  |++.+.....|..|++..|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~-~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQD-FKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCC-CCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcc-cCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            4554  499999999999999865553111 111234799985  9999999999999998764

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.0004  Score=44.43  Aligned_cols=56  Identities=16%  Similarity=0.229  Sum_probs=42.9

Q ss_pred             CcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc--ccccccCCHHHHHHHHHHhh
Q psy4065         118 DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       118 ~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~  174 (348)
                      ..|++.|.+...|..|+...|-..... .....|.|.  .|++.+.....|..|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~-~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFK-HPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCC-CSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccC-CCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            349999999999999996555422111 123489998  59999999999999998754

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.64  E-value=0.0038  Score=45.97  Aligned_cols=29  Identities=21%  Similarity=0.384  Sum_probs=24.4

Q ss_pred             CCCccccccccccCCHHHHHHHH--HHhhhh
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQ--QIHARE   68 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~--~~h~~~   68 (348)
                      ..++.|.+|...|.+...+..|.  +.|...
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~   60 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANK   60 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHH
Confidence            36789999999999999999999  566544

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.64  E-value=0.0017  Score=47.83  Aligned_cols=59  Identities=20%  Similarity=0.427  Sum_probs=44.9

Q ss_pred             CcccccccccccCChHHHHHHH--HHhcCC----------C-------------CCCCCCCCCccccccccccCCHHHHH
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHR--KRAHDL----------D-------------PPEGAEAKPFSCSVCGKTFTRREHLR   59 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~--~~~h~~----------~-------------~~~~~~~~~~~C~~C~~~f~~~~~l~   59 (348)
                      +++.|..|+..|.+...+..|+  +.|-..          .             .........|.|.+|+..|.+...|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            6789999999999999999998  333110          0             00112356788999999999999999


Q ss_pred             HHHH
Q psy4065          60 RHQQ   63 (348)
Q Consensus        60 ~H~~   63 (348)
                      .|+.
T Consensus       111 ~H~~  114 (127)
T 1zu1_A          111 SHYI  114 (127)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            9994

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.52  E-value=0.00057  Score=49.45  Aligned_cols=26  Identities=19%  Similarity=0.466  Sum_probs=16.7

Q ss_pred             CCCccccccccccCCHHHHHHHHHHh
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQQIH   65 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~~~h   65 (348)
                      .++|.|..|++.|.+...|..|+++.
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhh
Confidence            45666666666666666666666544

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.30  E-value=0.00064  Score=49.19  Aligned_cols=32  Identities=19%  Similarity=0.475  Sum_probs=28.4

Q ss_pred             CCCCCCCCCcchhhHHhhhhhHHHHHHHHHhc
Q psy4065         280 RERPPKPIPKCDVCKKVFSRRSHLLRHLKRLH  311 (348)
Q Consensus       280 ~~~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H  311 (348)
                      ..+++.++|.|..|++.|.+...|..|+++.-
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            34578889999999999999999999998873

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.22  E-value=0.0055  Score=35.28  Aligned_cols=30  Identities=27%  Similarity=0.407  Sum_probs=21.8

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhhc
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      ...|.|+.|+..|.....|+.||+-..++.
T Consensus        10 ~~~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           10 GGRKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             SSCCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             CCceeCCcccccccchHHHHhhhhhcCcch
Confidence            367778888888888888888877665553

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.18  E-value=0.0049  Score=35.49  Aligned_cols=35  Identities=17%  Similarity=0.079  Sum_probs=28.2

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHhcCCCCCCCcc
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRLHNIDPPPSSR  320 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~  320 (348)
                      .+|.|+-|+..|.....|+.||+.-.+-.....++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~v~~~~~   45 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQSG   45 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTTCCCCCS
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcchhhhhcc
Confidence            56999999999999999999999776555444433

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.17  E-value=0.0021  Score=50.20  Aligned_cols=56  Identities=23%  Similarity=0.385  Sum_probs=44.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHhhhhcc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      .+..|+.|+..+ .+..|..|+.....        .+...|+.|+..+ ....|..|..++.|+..
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~--------~r~~~C~~C~~~~-~~~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCP--------RRQVSCDNCAASM-AFEDKEIHDQNCPLALE  164 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCT--------TCEEECTTTCCEE-EGGGHHHHHTTCCC---
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCC--------CCCeECCCCCCcc-CHHHHHhHHHhCcChhh
Confidence            457899999987 56789999977776        6788999999988 45678999999888754

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.86  E-value=0.02  Score=30.81  Aligned_cols=26  Identities=27%  Similarity=0.611  Sum_probs=23.3

Q ss_pred             cccccccccccCChHHHHHHHHHhcC
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      -|.|++|-+.|.+...|..|+...|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            48899999999999999999988886

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.43  E-value=0.011  Score=31.85  Aligned_cols=27  Identities=22%  Similarity=0.529  Sum_probs=25.0

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhcCCC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLHNID  314 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H~~~  314 (348)
                      |-|++|.+.|.+...|..|+...|...
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            889999999999999999999999643

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=94.11  E-value=0.021  Score=29.59  Aligned_cols=26  Identities=31%  Similarity=0.760  Sum_probs=23.6

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhcCC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLHNI  313 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H~~  313 (348)
                      -.|.+|.+.|.+..+|..|++..|..
T Consensus        10 qhcrfckkkysdvknlikhire~hd~   35 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHDP   35 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            35999999999999999999998864

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.86  E-value=0.07  Score=28.80  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=21.9

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHh
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      ..+.|..|+.+|.+...+..|.+--
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             CcCeeccccceehhhHHHhhhheec
Confidence            4588999999999999999998653

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=90.31  E-value=0.084  Score=30.29  Aligned_cols=32  Identities=19%  Similarity=0.544  Sum_probs=20.4

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCcccccccccc
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF   52 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f   52 (348)
                      +.|.|-.||..|.....                .--...+|++||+.-
T Consensus         2 ~iY~C~rCg~~fs~~el----------------~~lP~IrCpyCGyri   33 (48)
T 4ayb_P            2 AVYRCGKCWKTFTDEQL----------------KVLPGVRCPYCGYKI   33 (48)
T ss_dssp             ---CCCCTTTTCCCCCS----------------CCCSSSCCTTTCCSC
T ss_pred             cEEEeeccCCCccHHHH----------------hhCCCcccCccCcEE
Confidence            46999999999864321                012457899999863

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=88.60  E-value=0.6  Score=24.18  Aligned_cols=25  Identities=28%  Similarity=0.747  Sum_probs=20.0

Q ss_pred             cccCcchhhcCCHHHHHHHHHHhCC
Q psy4065         115 FQCDVCNQGFVRKEHLVRHRKRAHD  139 (348)
Q Consensus       115 ~~C~~C~~~f~~~~~L~~H~~~~h~  139 (348)
                      -.|.+|.+.|++-..|..|.+..|+
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3688888888888888888877775

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=88.37  E-value=0.15  Score=36.70  Aligned_cols=29  Identities=21%  Similarity=0.486  Sum_probs=26.7

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHhcCCC
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRLHNID  314 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~H~~~  314 (348)
                      .+..|.+|...|.+...+..||+..|+.+
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H~k~~H~FD   42 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSHCKLEHQFN   42 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSCCC
T ss_pred             CceeEecCCCcccCHHHHHHHHHHhcCCC
Confidence            45889999999999999999999999775

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=87.55  E-value=0.16  Score=39.26  Aligned_cols=20  Identities=30%  Similarity=0.624  Sum_probs=8.9

Q ss_pred             ccccccccccCChHHHHHHHH
Q psy4065           7 FQCDVCNQGFVRKEHLVRHRK   27 (348)
Q Consensus         7 y~C~~C~~~f~~~~~l~~H~~   27 (348)
                      +.|+.|+..+ .+..|..|+.
T Consensus       111 v~C~~C~~~~-~r~~l~~H~~  130 (170)
T 3hcs_A          111 MDCPQCQRPF-QKFHINIHIL  130 (170)
T ss_dssp             EECTTTCCEE-EGGGHHHHHH
T ss_pred             eECCCCChHH-HHHHHHHHhh
Confidence            3444444443 3444444443

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=87.46  E-value=0.55  Score=25.33  Aligned_cols=26  Identities=27%  Similarity=0.439  Sum_probs=18.8

Q ss_pred             CCCCccccccccccCCHHHHHHHHHH
Q psy4065          39 EAKPFSCSVCGKTFTRREHLRRHQQI   64 (348)
Q Consensus        39 ~~~~~~C~~C~~~f~~~~~l~~H~~~   64 (348)
                      ....+.|..|+..|.....+..|.+-
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             ccCcCeeccccceehhhHHHhhhhee
Confidence            34567788888888887777777653

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=86.94  E-value=0.14  Score=34.22  Aligned_cols=24  Identities=33%  Similarity=0.563  Sum_probs=20.5

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhcCCC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLHNID  314 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H~~~  314 (348)
                      ..|.+||+.|..   |.+|+..+|+..
T Consensus        22 iiClecGK~fK~---LkRHL~~~hglt   45 (87)
T 2jsp_A           22 IVCLECGGSFKS---LKRHLTTHHSMT   45 (87)
T ss_dssp             EECTBTCCEESB---HHHHHHHTTCSC
T ss_pred             eEecccchhhHH---HHHHHHHccCCC
Confidence            579999999995   779999998653

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=85.35  E-value=0.41  Score=33.11  Aligned_cols=12  Identities=42%  Similarity=0.922  Sum_probs=8.4

Q ss_pred             Cccccccccccc
Q psy4065           5 RPFQCDVCNQGF   16 (348)
Q Consensus         5 ~~y~C~~C~~~f   16 (348)
                      .||+|..||+.|
T Consensus        66 ~p~~C~~CG~~F   77 (105)
T 2gmg_A           66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             ECcChhhCcCee
Confidence            467777777776

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=85.19  E-value=0.16  Score=29.55  Aligned_cols=38  Identities=26%  Similarity=0.648  Sum_probs=22.6

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccc
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKT   51 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~   51 (348)
                      .+.|+|..||+.+.-...--    +-..      .-..-|.|++||..
T Consensus         2 m~~y~C~vCGyvyd~~~Gd~----t~f~------~lP~dw~CP~Cg~~   39 (46)
T 6rxn_A            2 MQKYVCNVCGYEYDPAEHDN----VPFD------QLPDDWCCPVCGVS   39 (46)
T ss_dssp             CCCEEETTTCCEECGGGGTT----CCGG------GSCTTCBCTTTCCB
T ss_pred             CCEEECCCCCeEEeCCcCCC----cchh------hCCCCCcCcCCCCc
Confidence            46799999999986332111    0000      01234899999864

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=85.11  E-value=0.68  Score=23.60  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=18.3

Q ss_pred             cccccccccccCChHHHHHHHHH
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKR   28 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~   28 (348)
                      -|.|++|.....+...|..|+..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e~   25 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVME   25 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHHH
Confidence            47888888888888888888654

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=84.04  E-value=0.54  Score=30.61  Aligned_cols=50  Identities=24%  Similarity=0.555  Sum_probs=36.7

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHH
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH   61 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   61 (348)
                      .....|.|..|+.++. +..|..|+..-.+        ...|.|-.|+..|.. ..++.|
T Consensus         6 ~~MV~F~C~~Cgd~lK-K~kv~~H~~~Cr~--------~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A            6 SGMVFFTCNACGESVK-KIQVEKHVSNCRN--------CECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             CCCCEEEESSSCCEEE-TTHHHHHHHHCTT--------CCEEEETTTTEEEEG-GGTTTC
T ss_pred             CceeEEEcCCCCCeee-cccchhHHhhCCC--------CCcEEecccCCeeCC-CCEeCE
Confidence            4566789999998654 7788999776643        457889999999974 445555

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=83.23  E-value=0.66  Score=27.55  Aligned_cols=20  Identities=30%  Similarity=0.778  Sum_probs=18.6

Q ss_pred             ccccccccccCCHHHHHHHH
Q psy4065         151 FSCSVCGKTFTRREHLRRHQ  170 (348)
Q Consensus       151 ~~C~~C~~~f~~~~~L~~H~  170 (348)
                      -.|.+|+..|.....|+.|+
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            68999999999999999998

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.19  E-value=0.41  Score=31.20  Aligned_cols=28  Identities=25%  Similarity=0.502  Sum_probs=19.0

Q ss_pred             CccccccccccC-------CHHHHHHHHHHhhhhc
Q psy4065         150 PFSCSVCGKTFT-------RREHLRRHQQIHAREL  177 (348)
Q Consensus       150 ~~~C~~C~~~f~-------~~~~L~~H~~~h~~~~  177 (348)
                      .-.|.+|++.+.       .-..|.+|++.+|.+.
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~e   62 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREE   62 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHHH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCHHH
Confidence            466777777665       3457888887766653

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=82.40  E-value=0.68  Score=29.99  Aligned_cols=48  Identities=23%  Similarity=0.416  Sum_probs=25.3

Q ss_pred             ccccccccccCChHHHHHHHHHhcC----CCCC---CCCCCCCccccccccccCC
Q psy4065           7 FQCDVCNQGFVRKEHLVRHRKRAHD----LDPP---EGAEAKPFSCSVCGKTFTR   54 (348)
Q Consensus         7 y~C~~C~~~f~~~~~l~~H~~~~h~----~~~~---~~~~~~~~~C~~C~~~f~~   54 (348)
                      -+|++||........+..=+...-.    .|..   ..-+...|+||.||..|.-
T Consensus         9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG   63 (95)
T 2k5c_A            9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYG   63 (95)
T ss_dssp             EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEET
T ss_pred             ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhc
Confidence            4799999987655443322111100    0000   0001356999999988753

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=81.81  E-value=0.56  Score=26.09  Aligned_cols=25  Identities=12%  Similarity=0.185  Sum_probs=18.4

Q ss_pred             CCcccccccccccCChHHHHHHHHHh
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~   29 (348)
                      .-.|.|+.|+..|.. ..+.+|...|
T Consensus         7 ~~~~~C~~C~~~i~~-~~~~EH~D~H   31 (39)
T 2i5o_A            7 EDQVPCEKCGSLVPV-WDMPEHMDYH   31 (39)
T ss_dssp             CCEEECTTTCCEEEG-GGHHHHHHHH
T ss_pred             CCCcccccccCcCCc-ccccchhhHH
Confidence            346789999988876 5568886655

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=81.69  E-value=0.51  Score=32.68  Aligned_cols=30  Identities=27%  Similarity=0.641  Sum_probs=22.8

Q ss_pred             ccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccccccccc
Q psy4065         112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF  160 (348)
Q Consensus       112 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f  160 (348)
                      +.+|+|..||+.|.          .         ...+|-+|+.|.-..
T Consensus        65 v~p~~C~~CG~~F~----------~---------~~~kPsrCP~CkSe~   94 (105)
T 2gmg_A           65 IKPAQCRKCGFVFK----------A---------EINIPSRCPKCKSEW   94 (105)
T ss_dssp             ECCCBBTTTCCBCC----------C---------CSSCCSSCSSSCCCC
T ss_pred             EECcChhhCcCeec----------c---------cCCCCCCCcCCCCCc
Confidence            47899999999991          1         125789999998654

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=80.41  E-value=1.4  Score=31.54  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=17.3

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      .+..|-+|..+|.+...+..|++..|+
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H~k~~H~   40 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CceeEecCCCcccCHHHHHHHHHHhcC
Confidence            455666666666666666666666665

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=80.04  E-value=0.7  Score=27.45  Aligned_cols=27  Identities=26%  Similarity=0.628  Sum_probs=22.2

Q ss_pred             CCccccccccccCCHHHHHHHH--HHhhh
Q psy4065          41 KPFSCSVCGKTFTRREHLRRHQ--QIHAR   67 (348)
Q Consensus        41 ~~~~C~~C~~~f~~~~~l~~H~--~~h~~   67 (348)
                      ..-.|.+|+..|..+..|+.|+  +.|-.
T Consensus        12 P~~eC~lC~vkYs~r~slqDHIFs~qHI~   40 (55)
T 2yrk_A           12 TKPECTLCGVKYSARLSIRDHIFSKQHIS   40 (55)
T ss_dssp             CCSCCTTTTCCCCSSSCHHHHHTSHHHHH
T ss_pred             CCccccccCcccccccchhhhhccHHHHH
Confidence            3469999999999999999999  44444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-10
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-10
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.004
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	3e-09
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	3e-09
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	6e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	6e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	6e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	8e-09
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	8e-09
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	9e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.002
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.002
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	1e-08
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	1e-08
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	6e-04
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.003
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.003
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	2e-08
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	2e-08
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.002
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	3e-08
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	3e-08
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	6e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-08
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-08
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	8e-04
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	1e-07
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	1e-07
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-07
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-07
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	7e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	2e-07
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	2e-07
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	2e-07
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	2e-07
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-07
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-07
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	3e-07
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	3e-07
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	4e-07
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	4e-07
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	4e-07
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	4e-07
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	5e-06
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	5e-06
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	4e-05
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	1e-06
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	1e-06
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-06
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	2e-05
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	2e-05
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	2e-05
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	2e-05
d1a1ia3	28	g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus)	5e-05
d1a1ia3	28	g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus)	5e-05
d2adra2	31	g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Sac	3e-04
d2adra2	31	g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Sac	3e-04
d2adra2	31	g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Sac	0.004
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	4e-04
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	4e-04
d1bhia_	38	g.37.1.1 (A:) Transactivation domain of cre-bp1/at	0.002
d1bhia_	38	g.37.1.1 (A:) Transactivation domain of cre-bp1/at	0.002
d1x6ha1	37	g.37.1.1 (A:44-80) Transcriptional repressor CTCF	0.003
d1x6ha1	37	g.37.1.1 (A:44-80) Transcriptional repressor CTCF	0.003

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-10
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
          + + C  C + F  K    RH      L P          C VCGK F  + HL  H +I
Sbjct: 2  KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYG--------CGVCGKKFKMKHHLVGHMKI 52

Query: 65 H 65
          H
Sbjct: 53 H 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-10
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
           + + C  C + F  K    RH      L P          C VCGK F  + HL  H +I
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYG--------CGVCGKKFKMKHHLVGHMKI 52

Query: 173 H 173
           H
Sbjct: 53  H 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.004
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 280 RERPPKPIPKCDVCKKVFSRRSHLLRHLKRLH 311
                     C VC K F  + HL+ H  ++H
Sbjct: 23  SMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 53

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 49.5 bits (119), Expect = 3e-09
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          + F C VC + F R+EHL+RH + H  E
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNE 28

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 49.5 bits (119), Expect = 3e-09
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           + F C VC + F R+EHL+RH + H  E
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNE 28

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 34.5 bits (80), Expect = 6e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAH 30
          R F C+VC + F R+EHL RH  R+H
Sbjct: 1  RSFVCEVCTRAFARQEHLKRH-YRSH 25

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 34.5 bits (80), Expect = 6e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
           R F C+VC + F R+EHL RH  R+H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRH-YRSH 25

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 34.5 bits (80), Expect = 6e-04
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C+VC + F+R+ HL RH  R H
Sbjct: 4   VCEVCTRAFARQEHLKRH-YRSH 25

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (116), Expect = 8e-09
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP+ C  CGK F+R   L +HQ++H  E
Sbjct: 6  KPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (116), Expect = 8e-09
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP+ C  CGK F+R   L +HQ++H  E
Sbjct: 6   KPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (79), Expect = 9e-04
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C  C K FSR S L++H +R+H
Sbjct: 9   GCVECGKAFSRSSILVQH-QRVH 30

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (76), Expect = 0.002
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAH 30
          +P+ C  C + F R   LV+H +R H
Sbjct: 6  KPYGCVECGKAFSRSSILVQH-QRVH 30

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (76), Expect = 0.002
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
           +P+ C  C + F R   LV+H +R H
Sbjct: 6   KPYGCVECGKAFSRSSILVQH-QRVH 30

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (114), Expect = 1e-08
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KPF C +C + F+R +HL  H + H
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTH 26

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (114), Expect = 1e-08
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KPF C +C + F+R +HL  H + H
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTH 26

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (80), Expect = 6e-04
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           +C +C + FSR  HL  H  R H
Sbjct: 5   QCRICMRNFSRSDHLTTH-IRTH 26

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (75), Expect = 0.003
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAH 30
          +PFQC +C + F R +HL  H  R H
Sbjct: 2  KPFQCRICMRNFSRSDHLTTH-IRTH 26

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (75), Expect = 0.003
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
           +PFQC +C + F R +HL  H  R H
Sbjct: 2   KPFQCRICMRNFSRSDHLTTH-IRTH 26

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 2e-08
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          K F+C  C K F R +HL +H + H  +
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQNK 28

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 2e-08
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           K F+C  C K F R +HL +H + H  +
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNK 28

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C  C K F R  HL +H  + H
Sbjct: 4   ACPECPKRFMRSDHLSKH-IKTH 25

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (112), Expect = 3e-08
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KP+ C  CGK F++   L  HQ+IH
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQRIH 25

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (112), Expect = 3e-08
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KP+ C  CGK F++   L  HQ+IH
Sbjct: 1   KPYKCLECGKAFSQNSGLINHQRIH 25

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (80), Expect = 6e-04
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           KC  C K FS+ S L+ H +R+H
Sbjct: 4   KCLECGKAFSQNSGLINH-QRIH 25

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (110), Expect = 6e-08
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          KP++CS C KTF +++ L  H + +   
Sbjct: 7  KPYACSHCDKTFRQKQLLDMHFKRYHDP 34

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (110), Expect = 6e-08
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           KP++CS C KTF +++ L  H + +   
Sbjct: 7   KPYACSHCDKTFRQKQLLDMHFKRYHDP 34

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 6e-04
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAHD 31
          +P+ C  C++ F +K+ L  H KR HD
Sbjct: 7  KPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 6e-04
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHD 139
           +P+ C  C++ F +K+ L  H KR HD
Sbjct: 7   KPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 8e-04
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLHN 312
            C  C K F ++  L  H KR H+
Sbjct: 10  ACSHCDKTFRQKQLLDMHFKRYHD 33

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARE 68
          +P+SC    C K F R   L RH++ H  +
Sbjct: 2  RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
           +P+SC    C K F R   L RH++ H  +
Sbjct: 2   RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQ-IHAREL 69
          KP+ C +C   FT+   ++ H    H   +
Sbjct: 7  KPYECYICHARFTQSGTMKMHILQKHTENV 36

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQ-IHAREL 177
           KP+ C +C   FT+   ++ H    H   +
Sbjct: 7   KPYECYICHARFTQSGTMKMHILQKHTENV 36

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 7e-05
 Identities = 5/23 (21%), Positives = 12/23 (52%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
           +C +C   F++   +  H+ + H
Sbjct: 10  ECYICHARFTQSGTMKMHILQKH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 5  RPFQCDVCNQGFVRKEHLVRHRKRAH 30
          +P++C +C+  F +   +  H  + H
Sbjct: 7  KPYECYICHARFTQSGTMKMHILQKH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
           +P++C +C+  F +   +  H  + H
Sbjct: 7   KPYECYICHARFTQSGTMKMHILQKH 32

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHAREL 69
          +PF C +C   FT + +  RH ++H   L
Sbjct: 6  RPFVCRICLSAFTTKANCARHLKVHTDTL 34

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHAREL 177
           +PF C +C   FT + +  RH ++H   L
Sbjct: 6   RPFVCRICLSAFTTKANCARHLKVHTDTL 34

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (105), Expect = 2e-07
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARE 68
          KP  C+   C K+++R E+L+ H + H  E
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (105), Expect = 2e-07
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
           KP  C+   C K+++R E+L+ H + H  E
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (105), Expect = 3e-07
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARE 68
          +PF C+   CGK FTR + L+RH++ H  E
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (105), Expect = 3e-07
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
           +PF C+   CGK FTR + L+RH++ H  E
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (104), Expect = 3e-07
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIH 65
          +P++C V  C + F+R   L RH +IH
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIRIH 27

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (104), Expect = 3e-07
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIH 173
           +P++C V  C + F+R   L RH +IH
Sbjct: 1   RPYACPVESCDRRFSRSADLTRHIRIH 27

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (103), Expect = 4e-07
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARE 68
          KPF C+   CGK F+   +LR H +IH  +
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (103), Expect = 4e-07
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
           KPF C+   CGK F+   +LR H +IH  +
Sbjct: 1   KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (104), Expect = 4e-07
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 40 AKPFSCSVCGKTFTRREHLRRHQQ-IHARE 68
           KP+ C  CGK F+R +HL  H + +H  E
Sbjct: 3  GKPYICQSCGKGFSRPDHLNGHIKQVHTSE 32

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (104), Expect = 4e-07
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 148 AKPFSCSVCGKTFTRREHLRRHQQ-IHARE 176
            KP+ C  CGK F+R +HL  H + +H  E
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSE 32

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (96), Expect = 5e-06
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 3  VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV 47
          V +P+ C  C +GF R +HL  H K+ H          +P  C V
Sbjct: 2  VGKPYICQSCGKGFSRPDHLNGHIKQVH-------TSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (96), Expect = 5e-06
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 111 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV 155
           V +P+ C  C +GF R +HL  H K+ H          +P  C V
Sbjct: 2   VGKPYICQSCGKGFSRPDHLNGHIKQVH-------TSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 4e-05
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
            C  C K FSR  HL  H+K++H
Sbjct: 7   ICQSCGKGFSRPDHLNGHIKQVH 29

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 1e-06
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHA 66
          +P+ C    C K F +  +L+ H   HA
Sbjct: 1  RPYVCPFDGCNKKFAQSTNLKSHILTHA 28

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 1e-06
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHA 174
           +P+ C    C K F +  +L+ H   HA
Sbjct: 1   RPYVCPFDGCNKKFAQSTNLKSHILTHA 28

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
          KPF C  C ++F+R +HL  H++ H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
           KPF C  C ++F+R +HL  H++ H
Sbjct: 10  KPFQCPDCDRSFSRSDHLALHRKRH 34

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 43 FSCS--VCGKTFTRREHLRRHQQIHARE 68
          FSC    CGK+F  ++HL+ H ++H+  
Sbjct: 2  FSCPEPACGKSFNFKKHLKEHMKLHSDT 29

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 151 FSCS--VCGKTFTRREHLRRHQQIHARE 176
           FSC    CGK+F  ++HL+ H ++H+  
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHSDT 29

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
          + + C  CGK+F+    L +H++ H  E
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
           + + C  CGK+F+    L +H++ H  E
Sbjct: 11  RRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (87), Expect = 5e-05
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHAR 67
          KPF+C +CG+ F R +  +RH +IH R
Sbjct: 2  KPFACDICGRKFARSDERKRHTKIHLR 28

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (87), Expect = 5e-05
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHAR 175
           KPF+C +CG+ F R +  +RH +IH R
Sbjct: 2   KPFACDICGRKFARSDERKRHTKIHLR 28

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 42 PFSCSVCGKTFTRREHLRRHQQ-IHA 66
          P+ C +C + FTRR+ L RH Q IH+
Sbjct: 1  PYPCGLCNRAFTRRDLLIRHAQKIHS 26

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 150 PFSCSVCGKTFTRREHLRRHQQ-IHA 174
           P+ C +C + FTRR+ L RH Q IH+
Sbjct: 1   PYPCGLCNRAFTRRDLLIRHAQKIHS 26

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 32.1 bits (73), Expect = 0.004
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 290 CDVCKKVFSRRSHLLRHLKRLHN 312
           C +C + F+RR  L+RH +++H+
Sbjct: 4   CGLCNRAFTRRDLLIRHAQKIHS 26

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 11/54 (20%)

Query: 17 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC--GKTFTRREHLRRHQQIHARE 68
          + +  + ++ K   D         K F C      KTF RR ++R H Q H  +
Sbjct: 2  LPRGSIDKYVKEMPD---------KTFECLFPGCTKTFKRRYNIRSHIQTHLED 46

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 11/54 (20%)

Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC--GKTFTRREHLRRHQQIHARE 176
           + +  + ++ K   D         K F C      KTF RR ++R H Q H  +
Sbjct: 2   LPRGSIDKYVKEMPD---------KTFECLFPGCTKTFKRRYNIRSHIQTHLED 46

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 5  RPFQCDV--CNQGFVRKEHLVRHRKRAHDL 32
          +PF C    C Q F  ++HL  H+ + H++
Sbjct: 5  KPFLCTAPGCGQRFTNEDHLAVHKHK-HEM 33

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDL 140
           +PF C    C Q F  ++HL  H+ + H++
Sbjct: 5   KPFLCTAPGCGQRFTNEDHLAVHKHK-HEM 33

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (74), Expect = 0.003
 Identities = 13/19 (68%), Positives = 14/19 (73%)

Query: 43 FSCSVCGKTFTRREHLRRH 61
          F CS CGKTFTRR  + RH
Sbjct: 5  FVCSKCGKTFTRRNTMARH 23

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (74), Expect = 0.003
 Identities = 13/19 (68%), Positives = 14/19 (73%)

Query: 151 FSCSVCGKTFTRREHLRRH 169
           F CS CGKTFTRR  + RH
Sbjct: 5   FVCSKCGKTFTRRNTMARH 23

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.54
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.5
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.01
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.99
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.98
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.98
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.94
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.92
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.91
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.9
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.88
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.87
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.84
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.83
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.83
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.8
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.78
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.76
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.71
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.69
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.66
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.62
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.62
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.59
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.51
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.48
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.46
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.44
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.43
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.41
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.34
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.33
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.31
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.3
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.29
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.29
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.21
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.18
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.15
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.14
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.14
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.09
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.06
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.01
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.98
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.79
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.76
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.74
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.71
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.69
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.65
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.62
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.6
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.58
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.57
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.5
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.49
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.49
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.43
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.38
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.36
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.34
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.34
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.32
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.21
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.17
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.17
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.16
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	97.14
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.13
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.12
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.09
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.06
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.0
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.97
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.91
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.89
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.72
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.69
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.65
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.56
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.44
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.37
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.24
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.22
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.21
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.14
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.06
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.91
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.84
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.76
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	95.66
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.52
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.44
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.26
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.23
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.11
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.26
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	93.65
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.59
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.25
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.24
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.99
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.65
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.6
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	92.57
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.07
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	91.71
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	91.56
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	91.55
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	91.31
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.08
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	90.99
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	90.86
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.67
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.55
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	90.52
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	90.32
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.84
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	89.64
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	89.47
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.5
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	88.38
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	88.11
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	86.69
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	86.62
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	83.74
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	83.25
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	83.19
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	81.9
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	81.15
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	80.67
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	80.61
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	80.05

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.6e-15  Score=93.23  Aligned_cols=53  Identities=34%  Similarity=0.778  Sum_probs=50.0

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccccCCHHHHHHHHHHh
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH   65 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   65 (348)
                      ||||+|. ||+.|.....|..|+++|.+        +++|.|..||+.|.+...|.+|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~--------ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLG--------LRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSC--------CCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhcccc--------ccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            6899994 99999999999999988876        89999999999999999999999876

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.8e-15  Score=90.72  Aligned_cols=53  Identities=34%  Similarity=0.763  Sum_probs=49.8

Q ss_pred             ccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccccCCHHHHHHHHHHh
Q psy4065         112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       112 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h  173 (348)
                      +++|.| .||+.|.....|..|++.|.+        ++||.|..|++.|.+...|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~--------ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLG--------LRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSC--------CCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhcccc--------ccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            389999 599999999999999998887        89999999999999999999999886

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.7e-11  Score=66.73  Aligned_cols=38  Identities=39%  Similarity=0.917  Sum_probs=33.5

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      .+|||+|.+|++.|.....|..|++..|.       +++||+|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT-------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC-------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC-------CCcCcCCcC
Confidence            58999999999999999999999886555       599999974

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1e-10  Score=62.26  Aligned_cols=31  Identities=26%  Similarity=0.571  Sum_probs=26.9

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |+++|||+|.+|++.|.....|..|+++|.+
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            7888999999999999999999999888865

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-10  Score=64.61  Aligned_cols=37  Identities=38%  Similarity=0.911  Sum_probs=30.9

Q ss_pred             ccCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccc
Q psy4065         112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV  155 (348)
Q Consensus       112 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~  155 (348)
                      ++||+|.+|++.|.....|.+||+..|.       +++||+|.+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHT-------SERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSC-------CCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccC-------CCcCcCCcC
Confidence            3899999999999999999999876443       489999975

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1e-10  Score=63.16  Aligned_cols=31  Identities=35%  Similarity=0.625  Sum_probs=26.7

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |+++|||+|.+|++.|.....|..|+++|..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            6889999999999999999999999887754

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.4e-10  Score=63.42  Aligned_cols=31  Identities=19%  Similarity=0.528  Sum_probs=28.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |+++|||+|++|++.|.....|..|++.+|.
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            7899999999999999999999999888876

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-10  Score=63.43  Aligned_cols=31  Identities=35%  Similarity=0.645  Sum_probs=27.6

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |+++|||+|.+|++.|.....|..|++.|+.
T Consensus         3 HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            7889999999999999999999999888876

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.2e-10  Score=63.73  Aligned_cols=34  Identities=15%  Similarity=0.373  Sum_probs=31.3

Q ss_pred             CCCCCCCCcchhhHHhhhhhHHHHHHHHHhcCCC
Q psy4065         281 ERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNID  314 (348)
Q Consensus       281 ~~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~~~  314 (348)
                      .|++++||+|.+|++.|....+|..|++.+|+.+
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            4789999999999999999999999999999754

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=2.7e-10  Score=58.00  Aligned_cols=27  Identities=37%  Similarity=0.892  Sum_probs=18.5

Q ss_pred             CCcccccccccccCChHHHHHHHHHhc
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h   30 (348)
                      ||||+|.+|++.|.....|..|+++|.
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            467777777777777777777766664

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.5e-10  Score=63.44  Aligned_cols=33  Identities=27%  Similarity=0.484  Sum_probs=30.4

Q ss_pred             CCCCCCCCcchhhHHhhhhhHHHHHHHHHhcCC
Q psy4065         281 ERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNI  313 (348)
Q Consensus       281 ~~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~~  313 (348)
                      .+++++||+|.+|+++|...+.|..|++.||+.
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            478999999999999999999999999998853

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=3.9e-10  Score=62.21  Aligned_cols=30  Identities=43%  Similarity=0.882  Sum_probs=23.5

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhc
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h   30 (348)
                      |+++|||+|.+|++.|.....|..|++.|.
T Consensus         6 HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           6 STGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             cCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            678888888888888888888888876653

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=4.4e-10  Score=57.20  Aligned_cols=28  Identities=39%  Similarity=0.943  Sum_probs=22.3

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhh
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      ++||+|.+|++.|.....|..|+++|.|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            4678888888888888888888888865

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=9.9e-11  Score=65.15  Aligned_cols=30  Identities=33%  Similarity=0.850  Sum_probs=26.0

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         147 EAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +++||+|..|++.|.....|..|+++|.||
T Consensus         9 ~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           9 ERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            388999999999999999999999988875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.84  E-value=7.2e-10  Score=57.17  Aligned_cols=28  Identities=46%  Similarity=1.037  Sum_probs=22.5

Q ss_pred             CCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +||.|++|++.|.....|..|+++|.||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            4788888888888888888888888776

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=8.7e-10  Score=61.23  Aligned_cols=31  Identities=26%  Similarity=0.620  Sum_probs=21.2

Q ss_pred             CCCCCcccccccccccCChHHHHHHHHHhcC
Q psy4065           1 IDVVRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         1 ~~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |+++|||.|.+|++.|.....|..|+++|.+
T Consensus         7 Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           7 QRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             cCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            5667777777777777777777777666654

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=3e-10  Score=61.31  Aligned_cols=30  Identities=27%  Similarity=0.456  Sum_probs=27.7

Q ss_pred             CCCCCCCcchhhHHhhhhhHHHHHHHHHhc
Q psy4065         282 RPPKPIPKCDVCKKVFSRRSHLLRHLKRLH  311 (348)
Q Consensus       282 ~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H  311 (348)
                      +++++||+|.+|++.|.....|.+|++.|-
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            578999999999999999999999998764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=8.1e-10  Score=60.89  Aligned_cols=35  Identities=31%  Similarity=0.390  Sum_probs=31.0

Q ss_pred             CCCCCCCCCCCcchhhHHhhhhhHHHHHHHHHhcC
Q psy4065         278 IPRERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       278 ~~~~~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      +...+++++||+|.+|+++|..+++|..|++.|-+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            34678999999999999999999999999988743

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.7e-09  Score=57.45  Aligned_cols=30  Identities=43%  Similarity=0.922  Sum_probs=26.5

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         147 EAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +++||.|..|++.|.....|..|+++|.+|
T Consensus         4 gekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            488999999999999999999999999875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.7e-09  Score=55.56  Aligned_cols=28  Identities=39%  Similarity=0.857  Sum_probs=23.0

Q ss_pred             CCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +||.|.+|++.|.+...|..|+++|.++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            4788888888888888888888888776

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.4e-09  Score=52.39  Aligned_cols=25  Identities=24%  Similarity=0.772  Sum_probs=17.1

Q ss_pred             CcccccccccccCChHHHHHHHHHh
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~   29 (348)
                      |||+|.+||+.|.....|..|.++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            5677777777777777777776655

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.69  E-value=4.5e-09  Score=54.10  Aligned_cols=27  Identities=44%  Similarity=0.986  Sum_probs=17.4

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |||+|++|++.|.....|..|+++|.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTg   27 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccC
Confidence            466666666666666666666666654

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.2e-09  Score=51.44  Aligned_cols=26  Identities=46%  Similarity=0.989  Sum_probs=19.6

Q ss_pred             CCccccccccccCCHHHHHHHHHHhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~  174 (348)
                      +||+|..||+.|.....|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            47777777777777777777777763

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9.1e-09  Score=52.80  Aligned_cols=27  Identities=33%  Similarity=0.813  Sum_probs=18.0

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |||.|.+|++.|.....|..|+++|.+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htg   27 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQN   27 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCC
Confidence            566666666666666666666666654

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1e-08  Score=52.97  Aligned_cols=28  Identities=39%  Similarity=0.866  Sum_probs=22.0

Q ss_pred             CCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSV--CGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +||.|++  |++.|.+...|..|+++|.||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4788877  888888888888888888764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.1e-08  Score=52.91  Aligned_cols=28  Identities=46%  Similarity=0.979  Sum_probs=22.9

Q ss_pred             CCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSV--CGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +||.|++  |++.|.+...|..|+++|.||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5788877  888888888888888888775

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.1e-08  Score=53.70  Aligned_cols=33  Identities=33%  Similarity=0.720  Sum_probs=26.8

Q ss_pred             ccccc--cccccCChHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy4065           7 FQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV   47 (348)
Q Consensus         7 y~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~   47 (348)
                      |.|++  |++.|.+...|++|+++|.+        ++||.|.+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htg--------ekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSD--------TRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHT--------SCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCC--------CCCEeCCC
Confidence            67876  88888888888888888876        88888863

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.1e-08  Score=53.67  Aligned_cols=32  Identities=34%  Similarity=0.742  Sum_probs=24.2

Q ss_pred             cccCc--chhhcCCHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q psy4065         115 FQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS  154 (348)
Q Consensus       115 ~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~  154 (348)
                      |.|+.  |++.|...+.|.+|+++|.+        ++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htg--------ekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSD--------TRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHT--------SCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCC--------CCCEeCC
Confidence            56765  88888888888888877776        7778776

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.7e-08  Score=50.79  Aligned_cols=27  Identities=26%  Similarity=0.690  Sum_probs=16.2

Q ss_pred             Ccccccc--cccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDV--CNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~--C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |||+|.+  |++.|.+...|..|+++|.+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            4566655  66666666666666655544

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.7e-08  Score=50.50  Aligned_cols=27  Identities=30%  Similarity=0.626  Sum_probs=14.9

Q ss_pred             Ccccccc--cccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDV--CNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~--C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |||+|++  |++.|.+...|..|+++|.+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCC
Confidence            4555544  55555555555555555543

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=4.2e-08  Score=51.16  Aligned_cols=28  Identities=50%  Similarity=1.098  Sum_probs=21.0

Q ss_pred             CCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSV--CGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +||.|++  |++.|.+...|..|+++|.++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            4677754  888888888888888777765

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=8.2e-09  Score=59.90  Aligned_cols=40  Identities=33%  Similarity=0.575  Sum_probs=32.5

Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCccccc--cccccCCHHHHHHHHHHhhhhc
Q psy4065         129 HLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHAREL  177 (348)
Q Consensus       129 ~L~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~  177 (348)
                      .|..|+ .|.+        ++||.|.+  |++.|.....|..|+++|.+++
T Consensus         6 ~l~~h~-~h~g--------ekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYV-KEMP--------DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSC-EEET--------TTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchh-hccC--------CCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            345566 4555        89999988  9999999999999999998873

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=4e-08  Score=56.90  Aligned_cols=29  Identities=45%  Similarity=0.830  Sum_probs=20.3

Q ss_pred             CCCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065          40 AKPFSCSV--CGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus        40 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      +++|+|.+  |++.|...+.|.+|+++|.++
T Consensus        16 ekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             CCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            66777766  777777777777777777665

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1e-07  Score=48.63  Aligned_cols=27  Identities=41%  Similarity=1.024  Sum_probs=21.0

Q ss_pred             CCccccc--cccccCCHHHHHHHHHHhhh
Q psy4065         149 KPFSCSV--CGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       149 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~  175 (348)
                      +||.|.+  |++.|.+...|..|+++|.|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4788877  88888888888888887764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5e-08  Score=47.89  Aligned_cols=27  Identities=30%  Similarity=0.611  Sum_probs=25.4

Q ss_pred             CCCcchh--hHHhhhhhHHHHHHHHHhcC
Q psy4065         286 PIPKCDV--CKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       286 ~~y~C~~--C~~~f~~~~~L~~H~~~~H~  312 (348)
                      +||.|.+  |+++|...++|+.||+.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5799999  99999999999999999986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1.2e-07  Score=48.30  Aligned_cols=26  Identities=38%  Similarity=0.875  Sum_probs=15.7

Q ss_pred             Ccccccc--cccccCChHHHHHHHHHhc
Q psy4065           5 RPFQCDV--CNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         5 ~~y~C~~--C~~~f~~~~~l~~H~~~~h   30 (348)
                      |||+|.+  |++.|.+...|..|++.|.
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            4666655  6666666666666655553

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=1.7e-07  Score=49.00  Aligned_cols=28  Identities=43%  Similarity=1.045  Sum_probs=20.6

Q ss_pred             CCcccccc--cccccCChHHHHHHHHHhcC
Q psy4065           4 VRPFQCDV--CNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         4 ~~~y~C~~--C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +|||.|.+  |++.|.+...|..|++.|..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            57788866  88888888888888666643

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=1.5e-07  Score=49.26  Aligned_cols=29  Identities=38%  Similarity=0.878  Sum_probs=20.9

Q ss_pred             CCCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065         148 AKPFSCSV--CGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       148 ~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ++||.|.+  |++.|.+...|.+|+++|..+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            36777777  777777777777777777643

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.4e-07  Score=44.82  Aligned_cols=28  Identities=29%  Similarity=0.713  Sum_probs=21.6

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcC
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +|||.|++|+..|.++..+..|++.|-+
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            5788888888888888888888777755

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2e-07  Score=46.95  Aligned_cols=25  Identities=32%  Similarity=0.732  Sum_probs=17.8

Q ss_pred             Ccccccc--cccccCChHHHHHHHHHh
Q psy4065           5 RPFQCDV--CNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         5 ~~y~C~~--C~~~f~~~~~l~~H~~~~   29 (348)
                      |||+|++  |++.|.+...|+.|++.|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            5777766  777777777777776665

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.8e-07  Score=44.25  Aligned_cols=29  Identities=38%  Similarity=0.883  Sum_probs=23.9

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ++||.|++|+..|.++..+..|+++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            46888888888888888888888888663

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.3e-07  Score=46.74  Aligned_cols=26  Identities=35%  Similarity=0.876  Sum_probs=20.0

Q ss_pred             CCccccc--cccccCCHHHHHHHHHHhh
Q psy4065         149 KPFSCSV--CGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       149 ~~~~C~~--C~~~f~~~~~L~~H~~~h~  174 (348)
                      +||.|++  |++.|.+...|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4778877  8888888888888887773

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=5.2e-07  Score=43.53  Aligned_cols=26  Identities=38%  Similarity=0.876  Sum_probs=19.7

Q ss_pred             CCcccccccccccCChHHHHHHHHHh
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~   29 (348)
                      +|||.|.+||+.|.+.....+|.+.|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            57788888888888877777776655

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.2e-07  Score=44.34  Aligned_cols=30  Identities=23%  Similarity=0.394  Sum_probs=27.9

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHhcCCCC
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRLHNIDP  315 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~H~~~~  315 (348)
                      +||.|..|.+...+.++|+.|+++.|+.++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhskek   30 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccccccccccccchhhhhhhhcccccCC
Confidence            589999999999999999999999998764

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.3e-07  Score=43.38  Aligned_cols=28  Identities=25%  Similarity=0.603  Sum_probs=21.7

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhh
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      ++||+|.+|.+...+.+.|..|++.|.|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            3678888888888888888888887765

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.6e-07  Score=46.78  Aligned_cols=27  Identities=37%  Similarity=0.906  Sum_probs=18.0

Q ss_pred             Cccccc--ccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCD--VCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~--~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |||+|+  .|++.|.+...|..|+++|.+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            567774  377777777777777666654

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=5.7e-07  Score=41.83  Aligned_cols=23  Identities=35%  Similarity=0.778  Sum_probs=11.3

Q ss_pred             cccCcchhhcCCHHHHHHHHHHh
Q psy4065         115 FQCDVCNQGFVRKEHLVRHRKRA  137 (348)
Q Consensus       115 ~~C~~C~~~f~~~~~L~~H~~~~  137 (348)
                      .+|..|++-|+.+..|..||+.|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CccchhhhHhcchhHHHHHhhcc
Confidence            34555555555555555555443

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=8.5e-07  Score=42.35  Aligned_cols=28  Identities=25%  Similarity=0.573  Sum_probs=20.9

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcC
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      ++||+|..|.+.-++...|..|++.|.+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4677777777777777777777777654

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.2e-06  Score=40.73  Aligned_cols=26  Identities=42%  Similarity=1.027  Sum_probs=24.1

Q ss_pred             CccccccccccCCHHHHHHHHHHhhh
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      |.+|++|++-|+++..|+-|++.|.|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            57899999999999999999999875

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=1.9e-06  Score=41.55  Aligned_cols=25  Identities=48%  Similarity=1.236  Sum_probs=16.8

Q ss_pred             CCccccccccccCCHHHHHHHHHHh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h  173 (348)
                      +||.|.+||+.|.......+|.++|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            5666666666666666666666665

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.3e-06  Score=40.09  Aligned_cols=27  Identities=26%  Similarity=0.769  Sum_probs=19.1

Q ss_pred             Ccccccc--cccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDV--CNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~--C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |||.|.+  |++.+....+|+.|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5777765  77777777777777776664

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=9.3e-06  Score=38.37  Aligned_cols=26  Identities=31%  Similarity=0.763  Sum_probs=20.1

Q ss_pred             CCccccccccccCCHHHHHHHHHHhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~  174 (348)
                      +||+|..|.+.....++|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57788888888888888888887763

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.4e-05  Score=38.52  Aligned_cols=27  Identities=26%  Similarity=0.544  Sum_probs=22.3

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      |||+|..|.+......+|..|++..|+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            688888888888888888888888776

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=1.4e-05  Score=38.25  Aligned_cols=29  Identities=48%  Similarity=0.822  Sum_probs=23.5

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         148 AKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +..|.|.+|...|.+...|+.|+-+|.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            35688888888888888888888888764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.2e-06  Score=40.60  Aligned_cols=24  Identities=25%  Similarity=0.551  Sum_probs=22.6

Q ss_pred             CCcchhhHHhhhhhHHHHHHHHHh
Q psy4065         287 IPKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       287 ~y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      ||.|..|.++|.++.+|..||+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            689999999999999999999876

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.3e-06  Score=40.28  Aligned_cols=27  Identities=30%  Similarity=0.538  Sum_probs=25.4

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHhcC
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      +||+|.+|.+-....++|..|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            479999999999999999999999986

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.62  E-value=1.1e-05  Score=36.99  Aligned_cols=24  Identities=33%  Similarity=0.981  Sum_probs=18.8

Q ss_pred             ccccccccccCCHHHHHHHHHHhh
Q psy4065         151 FSCSVCGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       151 ~~C~~C~~~f~~~~~L~~H~~~h~  174 (348)
                      |+|.+|.++|..+..|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            678888888888888888877764

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.60  E-value=5.8e-06  Score=37.93  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=21.4

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHh
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      |+|..|.++|..++.|.+|.+.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            78999999999999999998765

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.3e-05  Score=36.97  Aligned_cols=27  Identities=22%  Similarity=0.618  Sum_probs=24.6

Q ss_pred             ccCcccCcchhhcCCHHHHHHHHHHhC
Q psy4065         112 VRPFQCDVCNQGFVRKEHLVRHRKRAH  138 (348)
Q Consensus       112 ~~~~~C~~C~~~f~~~~~L~~H~~~~h  138 (348)
                      ++||+|..|.+...+.++|..|++.|.
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCCcccccccchhcchhhHhhhhhccc
Confidence            479999999999999999999998764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.4e-05  Score=38.31  Aligned_cols=23  Identities=39%  Similarity=0.871  Sum_probs=13.4

Q ss_pred             CcccCcchhhcCCHHHHHHHHHH
Q psy4065         114 PFQCDVCNQGFVRKEHLVRHRKR  136 (348)
Q Consensus       114 ~~~C~~C~~~f~~~~~L~~H~~~  136 (348)
                      ||.|..|++.|.++..|..||.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            35566666666666666666543

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=3.5e-05  Score=36.93  Aligned_cols=26  Identities=23%  Similarity=0.593  Sum_probs=17.9

Q ss_pred             ccccccccccCCHHHHHHHHHHhhhh
Q psy4065         151 FSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       151 ~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      |.|+.|+....-.+.|+.|+++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            56777777777777777777776654

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.49  E-value=9e-06  Score=40.11  Aligned_cols=28  Identities=32%  Similarity=0.793  Sum_probs=26.0

Q ss_pred             CCcchhhHHhhhhhHHHHHHHHHhcCCC
Q psy4065         287 IPKCDVCKKVFSRRSHLLRHLKRLHNID  314 (348)
Q Consensus       287 ~y~C~~C~~~f~~~~~L~~H~~~~H~~~  314 (348)
                      ||.|.+|++.|..+..|.+|.+..|++.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcCc
Confidence            6899999999999999999999999764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3.4e-05  Score=38.55  Aligned_cols=31  Identities=35%  Similarity=0.764  Sum_probs=22.8

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCc
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPF   43 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~   43 (348)
                      |...|.+||+.|+....|.+| +..|.       +++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrh-klshs-------~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRH-KLSHS-------GEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHH-GGGSC-------SCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhh-hcccC-------CCCCC
Confidence            456788888888888888888 44444       46665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3e-05  Score=38.72  Aligned_cols=29  Identities=38%  Similarity=0.721  Sum_probs=14.2

Q ss_pred             CccccccccccCCHHHHHHHHHHhhhhcc
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQIHARELL  178 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  178 (348)
                      ...|.+||+.|...-.|.+|..+|.++++
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekp   33 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKP   33 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence            34455555555555555555444544443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.38  E-value=3.9e-05  Score=37.82  Aligned_cols=26  Identities=38%  Similarity=1.095  Sum_probs=22.9

Q ss_pred             cccccccccccCChHHHHHHHHHhcC
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      ||.|.+|++.|.++..|.+|....|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            78899999999999999999888876

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=1.7e-05  Score=42.07  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=24.0

Q ss_pred             CCCCCCcchhhHHhhhhhHHHHHHHHH
Q psy4065         283 PPKPIPKCDVCKKVFSRRSHLLRHLKR  309 (348)
Q Consensus       283 ~~~~~y~C~~C~~~f~~~~~L~~H~~~  309 (348)
                      ++.+||.|.+|++.|.++.+|.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            367899999999999999999999743

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=6.6e-05  Score=36.05  Aligned_cols=27  Identities=33%  Similarity=0.758  Sum_probs=15.0

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +||+|.+|........+|..|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            355555555555555555555555543

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=1.6e-05  Score=36.44  Aligned_cols=25  Identities=32%  Similarity=0.693  Sum_probs=23.1

Q ss_pred             CCcchhhHHhhhhhHHHHHHHHHhc
Q psy4065         287 IPKCDVCKKVFSRRSHLLRHLKRLH  311 (348)
Q Consensus       287 ~y~C~~C~~~f~~~~~L~~H~~~~H  311 (348)
                      ||+|..|...|..+.+|..||...|
T Consensus         2 pykcsscsqqfmqkkdlqshmiklh   26 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIKLH   26 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhcC
Confidence            6999999999999999999998755

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=4.1e-05  Score=36.25  Aligned_cols=22  Identities=32%  Similarity=0.652  Sum_probs=11.8

Q ss_pred             ccCcchhhcCCHHHHHHHHHHh
Q psy4065         116 QCDVCNQGFVRKEHLVRHRKRA  137 (348)
Q Consensus       116 ~C~~C~~~f~~~~~L~~H~~~~  137 (348)
                      .|.+||+.|..++.|.+|...|
T Consensus         4 vc~ecgkaf~essklkrh~lvh   25 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVH   25 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGT
T ss_pred             hHHHHhHHHHHHHHHHHHhhcc
Confidence            4555555555555555555444

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=8.4e-05  Score=35.59  Aligned_cols=25  Identities=24%  Similarity=0.642  Sum_probs=13.4

Q ss_pred             ccccccccccCCHHHHHHHHHHhhh
Q psy4065          43 FSCSVCGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus        43 ~~C~~C~~~f~~~~~l~~H~~~h~~   67 (348)
                      |.|++||......+-|..|+++|.+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccccccCcccCCHHHHHHHHHHhcC
Confidence            4455555555555555555555544

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.17  E-value=0.00016  Score=34.51  Aligned_cols=24  Identities=33%  Similarity=0.747  Sum_probs=13.7

Q ss_pred             Ccccccc--cccccCChHHHHHHHHH
Q psy4065           5 RPFQCDV--CNQGFVRKEHLVRHRKR   28 (348)
Q Consensus         5 ~~y~C~~--C~~~f~~~~~l~~H~~~   28 (348)
                      .||.|++  |++.|.....|++|-+.
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhc
Confidence            3566644  66666666666666443

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.17  E-value=0.00011  Score=38.83  Aligned_cols=26  Identities=31%  Similarity=0.790  Sum_probs=13.3

Q ss_pred             CccccccccccCCHHHHHHHHHHhhh
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQIHAR  175 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~h~~  175 (348)
                      .|.|.+|++.|.+...|--|++.|..
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             ccCCCCCCCccCCcccccchHhhhcc
Confidence            45555555555555555555555433

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00012  Score=34.90  Aligned_cols=25  Identities=52%  Similarity=0.909  Sum_probs=13.0

Q ss_pred             ccccccccccCCHHHHHHHHHHhhh
Q psy4065          43 FSCSVCGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus        43 ~~C~~C~~~f~~~~~l~~H~~~h~~   67 (348)
                      |.|..|...|+....|+.||.+|.+
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccC
Confidence            4555555555555555555555443

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00016  Score=34.03  Aligned_cols=26  Identities=31%  Similarity=0.649  Sum_probs=22.3

Q ss_pred             cccccccccccCChHHHHHHHHHhcC
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      .|+|++|.....+++.|+.|++..|.
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CccCCcchhheeehhhhhHHhhhccc
Confidence            48899999999999999999887764

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.13  E-value=0.00019  Score=34.24  Aligned_cols=25  Identities=36%  Similarity=0.949  Sum_probs=17.3

Q ss_pred             CCccccc--cccccCCHHHHHHHHHHh
Q psy4065         149 KPFSCSV--CGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       149 ~~~~C~~--C~~~f~~~~~L~~H~~~h  173 (348)
                      .||+|+.  |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            3677766  777777777777776665

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.12  E-value=0.00014  Score=38.34  Aligned_cols=27  Identities=22%  Similarity=0.512  Sum_probs=16.6

Q ss_pred             CCcccccccccccCChHHHHHHHHHhc
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h   30 (348)
                      ++.|.|.+|++.|.+..+|--|+..|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            455666666666666666666655443

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00017  Score=38.20  Aligned_cols=23  Identities=39%  Similarity=1.008  Sum_probs=12.8

Q ss_pred             CCCccccccccccCCHHHHHHHH
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQ   62 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~   62 (348)
                      .+||.|.+|++.|-+...+.+|.
T Consensus         3 iKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           3 IKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCceeccchhhhhhhHHHHHHhh
Confidence            34555555555555555555554

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00011  Score=34.71  Aligned_cols=27  Identities=41%  Similarity=0.845  Sum_probs=24.5

Q ss_pred             CccccccccccCCHHHHHHHHHHhhhh
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ...|..||+.|.-...|++|+.+|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            367999999999999999999999875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.00031  Score=32.65  Aligned_cols=24  Identities=25%  Similarity=0.605  Sum_probs=19.2

Q ss_pred             cccccccccCChHHHHHHHHHhcC
Q psy4065           8 QCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         8 ~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +|+.|.++|.++.-|+.|-+.|.+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htg   25 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTG   25 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSS
T ss_pred             cCcchHHHHHHhHhhhhccccccC
Confidence            688888888888888888777765

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.00029  Score=32.17  Aligned_cols=24  Identities=33%  Similarity=0.836  Sum_probs=18.0

Q ss_pred             cccccccccccCChHHHHHHHHHh
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~   29 (348)
                      ||+|..|...|-.+..|..|+...
T Consensus         2 pykcsscsqqfmqkkdlqshmikl   25 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIKL   25 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhc
Confidence            677777777777777777776654

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00037  Score=36.40  Aligned_cols=27  Identities=33%  Similarity=0.759  Sum_probs=22.1

Q ss_pred             CCCcccc--cccccccCChHHHHHHHHHh
Q psy4065           3 VVRPFQC--DVCNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         3 ~~~~y~C--~~C~~~f~~~~~l~~H~~~~   29 (348)
                      .+|||.|  +-|+..|.+...|..|...|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            4789999  56999999999999986665

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.89  E-value=0.00037  Score=31.95  Aligned_cols=24  Identities=33%  Similarity=0.776  Sum_probs=19.2

Q ss_pred             ccccccccccCChHHHHHHHHHhc
Q psy4065           7 FQCDVCNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         7 y~C~~C~~~f~~~~~l~~H~~~~h   30 (348)
                      |.|++|-+.|.++.++..|++..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            678888888888888888877655

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00049  Score=32.24  Aligned_cols=21  Identities=43%  Similarity=1.067  Sum_probs=15.9

Q ss_pred             cccccccccccCChHHHHHHH
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHR   26 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~   26 (348)
                      ||+|..||+-+.++..|.+|-
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            677888888777777777773

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00041  Score=32.22  Aligned_cols=25  Identities=32%  Similarity=0.651  Sum_probs=23.5

Q ss_pred             cccccccccCCHHHHHHHHHHhhhh
Q psy4065          44 SCSVCGKTFTRREHLRRHQQIHARE   68 (348)
Q Consensus        44 ~C~~C~~~f~~~~~l~~H~~~h~~~   68 (348)
                      +|+.|.+.|.++..|..|.+.|.++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            6999999999999999999999876

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00049  Score=32.47  Aligned_cols=25  Identities=36%  Similarity=0.737  Sum_probs=16.4

Q ss_pred             CccccccccccCCHHHHHHHHHHhh
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~~~h~  174 (348)
                      |-+|+.|.++.+++..|+.|-++|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            3466667777777777776666664

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.56  E-value=0.00066  Score=32.45  Aligned_cols=28  Identities=50%  Similarity=0.903  Sum_probs=18.7

Q ss_pred             CCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSV--CGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +||.|..  |.+.|.+.-.|.+|..+|.++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            3566665  777777777777777666653

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.44  E-value=0.00078  Score=32.19  Aligned_cols=26  Identities=38%  Similarity=0.896  Sum_probs=14.8

Q ss_pred             Ccccccc--cccccCChHHHHHHHHHhc
Q psy4065           5 RPFQCDV--CNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         5 ~~y~C~~--C~~~f~~~~~l~~H~~~~h   30 (348)
                      |||.|.+  |.+.|.+...|.+|...|.
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            4555643  6666666666666655554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00033  Score=32.97  Aligned_cols=26  Identities=35%  Similarity=0.634  Sum_probs=23.9

Q ss_pred             CCcchhhHHhhhhhHHHHHHHHHhcC
Q psy4065         287 IPKCDVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       287 ~y~C~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      .|+|+.|+-.-..+++|+.|++..|.
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CccCCcchhheeehhhhhHHhhhccc
Confidence            38999999999999999999999884

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.24  E-value=0.0017  Score=31.55  Aligned_cols=28  Identities=32%  Similarity=0.705  Sum_probs=18.4

Q ss_pred             CCccccc--cccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSV--CGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      +.|.|.+  |+..|...|.|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            3466655  777777777777777666654

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.002  Score=33.55  Aligned_cols=27  Identities=44%  Similarity=0.997  Sum_probs=22.5

Q ss_pred             CCCccccc--cccccCCHHHHHHHHHHhh
Q psy4065         148 AKPFSCSV--CGKTFTRREHLRRHQQIHA  174 (348)
Q Consensus       148 ~~~~~C~~--C~~~f~~~~~L~~H~~~h~  174 (348)
                      .+||.|..  |+.+|.+...|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            68999965  9999999999988887764

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0013  Score=30.94  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=18.3

Q ss_pred             cccccccccccCChHHHHHHHHHh
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~   29 (348)
                      |-+|+.|.++..++..|+.|-+.|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            457888888888888888886655

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.14  E-value=0.0006  Score=31.22  Aligned_cols=25  Identities=32%  Similarity=0.712  Sum_probs=23.5

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhcC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLHN  312 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H~  312 (348)
                      |.|++|-+.|..+.++..|.+..|.
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiihk   26 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIHK   26 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCchhhHHhccccCceEEEEEecC
Confidence            8899999999999999999998874

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.00067  Score=33.31  Aligned_cols=26  Identities=35%  Similarity=0.837  Sum_probs=19.2

Q ss_pred             CCccccc--cccccCCHHHHHHHH-HHhh
Q psy4065         149 KPFSCSV--CGKTFTRREHLRRHQ-QIHA  174 (348)
Q Consensus       149 ~~~~C~~--C~~~f~~~~~L~~H~-~~h~  174 (348)
                      +||.|.+  |.+.|++.+.-..|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            4777877  888888887777776 6664

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.005  Score=30.81  Aligned_cols=29  Identities=28%  Similarity=0.665  Sum_probs=24.8

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCC
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDP   34 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~~~~   34 (348)
                      -|.|..|+++|.++..+.+|-....+.+.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~d~   32 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGPDG   32 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCCCS
T ss_pred             eeeecccccchhcchHHHHHhhhcCCCCC
Confidence            58999999999999999999887776543

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0019  Score=35.43  Aligned_cols=25  Identities=32%  Similarity=0.596  Sum_probs=22.3

Q ss_pred             CCCcchhhHHhhhhhHHHHHHHHHh
Q psy4065         286 PIPKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       286 ~~y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      ..|.|.+|++.|.....|+.|-..|
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHhc
Confidence            3589999999999999999998664

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0048  Score=29.40  Aligned_cols=26  Identities=19%  Similarity=0.416  Sum_probs=22.7

Q ss_pred             cccccccccccCChHHHHHHHHHhcC
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      .|.|..|++...+...++.|++.-|.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            57899999999999999999888775

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0086  Score=35.22  Aligned_cols=39  Identities=18%  Similarity=0.440  Sum_probs=33.1

Q ss_pred             CCCCCCCccccccccccCCHHHHHHHHHHhhhhhhhccc
Q psy4065          36 EGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSM   74 (348)
Q Consensus        36 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~   74 (348)
                      .......|+|..|+..|.+...|..|+..|+.+......
T Consensus        12 ~~~~s~~yQC~HCd~K~~s~~el~~hl~~hneefqkra~   50 (75)
T d1x6fa1          12 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAK   50 (75)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCCceeeechhHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            345567899999999999999999999999998665544

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.00046  Score=33.91  Aligned_cols=28  Identities=32%  Similarity=0.511  Sum_probs=24.2

Q ss_pred             CCCcchh--hHHhhhhhHHHHHHHHHhcCC
Q psy4065         286 PIPKCDV--CKKVFSRRSHLLRHLKRLHNI  313 (348)
Q Consensus       286 ~~y~C~~--C~~~f~~~~~L~~H~~~~H~~  313 (348)
                      +||.|.+  |.++|+..++.-.|...-|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            5899999  999999999999998665643

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.005  Score=28.74  Aligned_cols=21  Identities=48%  Similarity=1.122  Sum_probs=18.3

Q ss_pred             CccccccccccCCHHHHHHHH
Q psy4065         150 PFSCSVCGKTFTRREHLRRHQ  170 (348)
Q Consensus       150 ~~~C~~C~~~f~~~~~L~~H~  170 (348)
                      ||.|..||+.|-++..|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            688999999999999988885

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0057  Score=30.60  Aligned_cols=28  Identities=50%  Similarity=0.852  Sum_probs=23.1

Q ss_pred             CCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ..|.|..|++.|.+...+.+|-..+.+.
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCCC
Confidence            4688999999999999999997776653

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.23  E-value=0.0016  Score=32.77  Aligned_cols=29  Identities=28%  Similarity=0.598  Sum_probs=25.7

Q ss_pred             CCCCcchhhHHhhhhhHHHHHHHHHhcCC
Q psy4065         285 KPIPKCDVCKKVFSRRSHLLRHLKRLHNI  313 (348)
Q Consensus       285 ~~~y~C~~C~~~f~~~~~L~~H~~~~H~~  313 (348)
                      ...|+|.+|.+.|..++++-+|+-.-|+.
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSHk~   34 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSHKR   34 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSSS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhccc
Confidence            34599999999999999999999988853

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.011  Score=32.37  Aligned_cols=28  Identities=39%  Similarity=0.792  Sum_probs=23.4

Q ss_pred             CCCccccccccccCCHHHHHHHHHHhhh
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   67 (348)
                      ...|.|..|++.|.....|+.|-..|.-
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcCc
Confidence            4568899999999999999999887754

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.014  Score=29.67  Aligned_cols=17  Identities=29%  Similarity=0.340  Sum_probs=11.7

Q ss_pred             cCCHHHHHHHHHHhhhh
Q psy4065         160 FTRREHLRRHQQIHARE  176 (348)
Q Consensus       160 f~~~~~L~~H~~~h~~~  176 (348)
                      |...-.|..|+|+|++|
T Consensus        17 f~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          17 FKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CSSHHHHHHHTHHHHCC
T ss_pred             chhHHHHHHHHhhcCCC
Confidence            66667777777777664

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.014  Score=27.79  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=25.1

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhcCCCC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLHNIDP  315 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H~~~~  315 (348)
                      |.|..|++...+...++.|+-.-|+..|
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn~~p   30 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHNSLP   30 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTCCCS
T ss_pred             eechhHHHHHhhccCceEEEeecccCCc
Confidence            8899999999999999999988887543

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.59  E-value=0.033  Score=30.25  Aligned_cols=26  Identities=27%  Similarity=0.726  Sum_probs=19.7

Q ss_pred             CCCCccccccccccCCHHHHHHHHHH
Q psy4065         147 EAKPFSCSVCGKTFTRREHLRRHQQI  172 (348)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~L~~H~~~  172 (348)
                      .+.|..|++|+........|++|+..
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            35677888888888888888888755

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.25  E-value=0.034  Score=26.89  Aligned_cols=26  Identities=27%  Similarity=0.672  Sum_probs=18.2

Q ss_pred             Cccccc--cccccCCHHHHHHHHHHhhh
Q psy4065          42 PFSCSV--CGKTFTRREHLRRHQQIHAR   67 (348)
Q Consensus        42 ~~~C~~--C~~~f~~~~~l~~H~~~h~~   67 (348)
                      .|.|.+  |+..|...+.|..|+-.|.+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcC
Confidence            466655  77777777777777776665

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.24  E-value=0.03  Score=27.62  Aligned_cols=24  Identities=33%  Similarity=0.672  Sum_probs=19.8

Q ss_pred             CCCccccccccccCCHHHHHHHHH
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQQ   63 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~~   63 (348)
                      ...|.|.-||..|.+.+.|..|+.
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            456889999999999988888874

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.99  E-value=0.062  Score=29.14  Aligned_cols=28  Identities=25%  Similarity=0.453  Sum_probs=19.4

Q ss_pred             CCcccccccccccCChHHHHHHHHHhcC
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      +.|-.|++|+.+.+...+|++|+...|.
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            4566677777777777777777766665

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.0075  Score=36.74  Aligned_cols=27  Identities=19%  Similarity=0.469  Sum_probs=23.8

Q ss_pred             CCCCCcchhhHHhhhhhHHHHHHHHHh
Q psy4065         284 PKPIPKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       284 ~~~~y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      +...|.|..|++.|.+...|..|+++.
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksK   38 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSK   38 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CCCEEecccccCccCCHHHHHHHHccc
Confidence            344599999999999999999999876

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.60  E-value=0.041  Score=27.12  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             cCcccCcchhhcCCHHHHHHHH
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHR  134 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~  134 (348)
                      ..|.|.-||..|++.+.|..|.
T Consensus         7 arf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cceeccccceeecChhHHHhhh
Confidence            4689999999999999999886

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.055  Score=30.12  Aligned_cols=31  Identities=29%  Similarity=0.640  Sum_probs=26.6

Q ss_pred             CCCcccccc--cccccCChHHHHHHHHHhcCCC
Q psy4065           3 VVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLD   33 (348)
Q Consensus         3 ~~~~y~C~~--C~~~f~~~~~l~~H~~~~h~~~   33 (348)
                      .=+||+|.+  |...|....+|..|.+..|..+
T Consensus        17 pyrpyrcvhqgc~aaftiq~nlilhy~avh~s~   49 (61)
T d1x3ca1          17 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSD   49 (61)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSC
T ss_pred             CCCceeeeccchhhhhhhhhhHHHHHHHHhhhc
Confidence            347999965  9999999999999999999744

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.07  E-value=0.062  Score=24.82  Aligned_cols=23  Identities=22%  Similarity=0.634  Sum_probs=13.9

Q ss_pred             ccccc--cccccCChHHHHHHHHHh
Q psy4065           7 FQCDV--CNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         7 y~C~~--C~~~f~~~~~l~~H~~~~   29 (348)
                      |.|.+  |++.|..-..|+.|.-.|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            55543  666666666666665444

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.051  Score=25.50  Aligned_cols=18  Identities=33%  Similarity=0.748  Sum_probs=13.1

Q ss_pred             cccccCCHHHHHHHHHHh
Q psy4065         156 CGKTFTRREHLRRHQQIH  173 (348)
Q Consensus       156 C~~~f~~~~~L~~H~~~h  173 (348)
                      |.+.|.....++.|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            777777777777777655

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.062  Score=27.16  Aligned_cols=30  Identities=23%  Similarity=0.431  Sum_probs=26.4

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHhcCCCCCC
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRLHNIDPPP  317 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~H~~~~p~  317 (348)
                      ..|..|-++|.+.-++++|.-.+|+.....
T Consensus         4 ltclecmrtfkssfsiwrhqvevhnqn~m~   33 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVEVHNQNNMA   33 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHHTSCCCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHhhheeccccccC
Confidence            469999999999999999999999776543

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.13  Score=30.04  Aligned_cols=30  Identities=23%  Similarity=0.586  Sum_probs=26.9

Q ss_pred             CCCCccccccccccCCHHHHHHHHHHhhhh
Q psy4065         147 EAKPFSCSVCGKTFTRREHLRRHQQIHARE  176 (348)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  176 (348)
                      ....|.|..|.-.|.+...|..|+..|..+
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            456799999999999999999999999876

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.025  Score=34.34  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHH
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRK  135 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~  135 (348)
                      ..|.|..|++.|.+...|..|++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTT
T ss_pred             CEEecccccCccCCHHHHHHHHc
Confidence            45899999999999999999974

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=90.99  E-value=0.052  Score=28.31  Aligned_cols=29  Identities=17%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             CCCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccc
Q psy4065           2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKT   51 (348)
Q Consensus         2 ~~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~   51 (348)
                      +.++.|.|..||+...                     ++.+-+|++|+..
T Consensus         1 D~~~~~vC~vCGyi~~---------------------g~~Pe~CPvCg~~   29 (36)
T d1yuza2           1 DDDKFHLCPICGYIHK---------------------GEDFEKCPICFRP   29 (36)
T ss_dssp             CSCCEEECSSSCCEEE---------------------SSCCSBCTTTCCB
T ss_pred             CCCCEEECCCCCCEee---------------------CCCCCcCCCCCCc
Confidence            4577899999999742                     2356689999854

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.084  Score=26.65  Aligned_cols=28  Identities=21%  Similarity=0.457  Sum_probs=23.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCC
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDL  140 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~  140 (348)
                      +...|.+|-+.|++.-.+++|.-..|..
T Consensus         2 kkltclecmrtfkssfsiwrhqvevhnq   29 (41)
T d1wjpa3           2 KKLTCLECMRTFKSSFSIWRHQVEVHNQ   29 (41)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             CcccHHHHHHHHHHHHHHHHhhheeccc
Confidence            3468999999999999999998777763

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.67  E-value=0.11  Score=23.91  Aligned_cols=24  Identities=38%  Similarity=0.909  Sum_probs=20.1

Q ss_pred             ccccc--cccccCCHHHHHHHHHHhh
Q psy4065          43 FSCSV--CGKTFTRREHLRRHQQIHA   66 (348)
Q Consensus        43 ~~C~~--C~~~f~~~~~l~~H~~~h~   66 (348)
                      |-|..  |++.|.....|..|+-+|.
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            45655  9999999999999998874

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.55  E-value=0.079  Score=24.84  Aligned_cols=22  Identities=18%  Similarity=0.462  Sum_probs=14.7

Q ss_pred             cccc--cccccCChHHHHHHHHHh
Q psy4065           8 QCDV--CNQGFVRKEHLVRHRKRA   29 (348)
Q Consensus         8 ~C~~--C~~~f~~~~~l~~H~~~~   29 (348)
                      .|+.  |++-|++.+.++.|+-+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            4544  777777777777776544

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.022  Score=33.92  Aligned_cols=38  Identities=24%  Similarity=0.479  Sum_probs=26.3

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccc
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKT   51 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~   51 (348)
                      ...-|+|+.|+++|.....+.. +..          ....|.|.+|+-.
T Consensus        11 ~~~~y~Cp~C~~~ys~Lda~~L-~d~----------~~~~F~C~~C~~e   48 (62)
T d1vd4a_          11 NRASFKCPVCSSTFTDLEANQL-FDP----------MTGTFRCTFCHTE   48 (62)
T ss_dssp             SSSEEECSSSCCEEEHHHHHHH-EET----------TTTEEBCSSSCCB
T ss_pred             cCCceECCCCCCCcchhhHHHh-cCc----------CCCeEEecCCCCE
Confidence            3456899999999877666654 221          2457899998754

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.32  E-value=0.1  Score=26.06  Aligned_cols=26  Identities=23%  Similarity=0.696  Sum_probs=14.7

Q ss_pred             cccccccccccCChHHHHHHHHHhcC
Q psy4065           6 PFQCDVCNQGFVRKEHLVRHRKRAHD   31 (348)
Q Consensus         6 ~y~C~~C~~~f~~~~~l~~H~~~~h~   31 (348)
                      .|+|..|.+++.-...+-+|....|.
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             EEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            45555565555555555555555543

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.84  E-value=0.049  Score=25.79  Aligned_cols=26  Identities=35%  Similarity=0.838  Sum_probs=22.9

Q ss_pred             Ccchh--hHHhhhhhHHHHHHHHHhcCC
Q psy4065         288 PKCDV--CKKVFSRRSHLLRHLKRLHNI  313 (348)
Q Consensus       288 y~C~~--C~~~f~~~~~L~~H~~~~H~~  313 (348)
                      |+|..  |+..|.++..++.|....|+.
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnrfhn~   30 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNRFHNI   30 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHHHTTT
T ss_pred             ccccCCCcceEEeehHHHHHHHhhhccC
Confidence            67765  999999999999999998864

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.082  Score=26.70  Aligned_cols=18  Identities=22%  Similarity=0.307  Sum_probs=11.2

Q ss_pred             cccCCHHHHHHHHHHhhh
Q psy4065          50 KTFTRREHLRRHQQIHAR   67 (348)
Q Consensus        50 ~~f~~~~~l~~H~~~h~~   67 (348)
                      +.|.....|..||+.|.+
T Consensus        15 ~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHC
T ss_pred             CcchhHHHHHHHHhhcCC
Confidence            446666666666666655

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.47  E-value=0.08  Score=27.79  Aligned_cols=28  Identities=29%  Similarity=0.795  Sum_probs=20.7

Q ss_pred             CCCcccccccccccCChHHHHHHHHHhcCCCCCCCCCCCCccccccccc
Q psy4065           3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKT   51 (348)
Q Consensus         3 ~~~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~   51 (348)
                      .++.|.|..||+.+.                     ++.|-.|++|+..
T Consensus         2 ~~~~~~C~vCG~i~~---------------------g~~P~~CPvCg~~   29 (37)
T d1nnqa2           2 IKKVYICPICGYTAV---------------------DEAPEYCPVCGAP   29 (37)
T ss_dssp             CSCEEECTTTCCEEE---------------------SCCCSBCTTTCCB
T ss_pred             CCcEEECCCCCCEec---------------------CCCCCcCCCCCCc
Confidence            356799999999752                     2456789999854

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.50  E-value=0.29  Score=23.05  Aligned_cols=25  Identities=36%  Similarity=0.761  Sum_probs=14.0

Q ss_pred             ccccc--ccccccCChHHHHHHHHHhc
Q psy4065           6 PFQCD--VCNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus         6 ~y~C~--~C~~~f~~~~~l~~H~~~~h   30 (348)
                      .|.|.  .|.-.|.++..+..|+...|
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhc
Confidence            35553  36666666666666655554

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.12  Score=28.67  Aligned_cols=36  Identities=28%  Similarity=0.492  Sum_probs=30.8

Q ss_pred             CCCCCcchh--hHHhhhhhHHHHHHHHHhcCCCCCCCc
Q psy4065         284 PKPIPKCDV--CKKVFSRRSHLLRHLKRLHNIDPPPSS  319 (348)
Q Consensus       284 ~~~~y~C~~--C~~~f~~~~~L~~H~~~~H~~~~p~~~  319 (348)
                      +-+||.|..  |...|+-..+|..|++.+|..+-|...
T Consensus        17 pyrpyrcvhqgc~aaftiq~nlilhy~avh~s~lp~~~   54 (61)
T d1x3ca1          17 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   54 (61)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             CCCceeeeccchhhhhhhhhhHHHHHHHHhhhcCchhh
Confidence            446899987  999999999999999999988766543

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.69  E-value=0.1  Score=35.88  Aligned_cols=30  Identities=20%  Similarity=0.500  Sum_probs=26.6

Q ss_pred             CCCCcchhhHHhhhhhHHHHHHHHHhcCCC
Q psy4065         285 KPIPKCDVCKKVFSRRSHLLRHLKRLHNID  314 (348)
Q Consensus       285 ~~~y~C~~C~~~f~~~~~L~~H~~~~H~~~  314 (348)
                      ..+-.|.+|.+.|.+...+..||+..|+.+
T Consensus        13 ~~~~~CLFCd~~f~s~~~~l~H~k~~H~FD   42 (121)
T d1wira_          13 RQHTPCLFCDRLFASAEETFSHCKLEHQFN   42 (121)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHSSCCC
T ss_pred             cccceecccCCccCCHHHHHHHHHHhhCCC
Confidence            345679999999999999999999999865

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=0.039  Score=32.83  Aligned_cols=36  Identities=25%  Similarity=0.548  Sum_probs=27.1

Q ss_pred             cCcccCcchhhcCCHHHHHHHHHHhCCCCCCCCCCCCCccccccccc
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKT  159 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~~C~~C~~~  159 (348)
                      ..|.|+.|+++|.....+.. + ..         ....|.|.+|+-.
T Consensus        13 ~~y~Cp~C~~~ys~Lda~~L-~-d~---------~~~~F~C~~C~~e   48 (62)
T d1vd4a_          13 ASFKCPVCSSTFTDLEANQL-F-DP---------MTGTFRCTFCHTE   48 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHHH-E-ET---------TTTEEBCSSSCCB
T ss_pred             CceECCCCCCCcchhhHHHh-c-Cc---------CCCeEEecCCCCE
Confidence            67999999999998777653 1 11         2578999999864

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.74  E-value=0.23  Score=27.08  Aligned_cols=22  Identities=27%  Similarity=0.700  Sum_probs=19.4

Q ss_pred             CCccccccccccCCHHHHHHHH
Q psy4065         149 KPFSCSVCGKTFTRREHLRRHQ  170 (348)
Q Consensus       149 ~~~~C~~C~~~f~~~~~L~~H~  170 (348)
                      .+-.|.+|+..|+.+.+++.|+
T Consensus         5 p~~eC~lC~vKYs~~~SvrdHi   26 (48)
T d2yrka1           5 TKPECTLCGVKYSARLSIRDHI   26 (48)
T ss_dssp             CCSCCTTTTCCCCSSSCHHHHH
T ss_pred             CcccCcccceeeeeecchHhhh
Confidence            3578999999999999999997

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.5  Score=23.71  Aligned_cols=25  Identities=20%  Similarity=0.490  Sum_probs=21.8

Q ss_pred             CCcccccccccccCChHHHHHHHHH
Q psy4065           4 VRPFQCDVCNQGFVRKEHLVRHRKR   28 (348)
Q Consensus         4 ~~~y~C~~C~~~f~~~~~l~~H~~~   28 (348)
                      .+.|.|.+|-+-..++..|.+|+..
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHHh
Confidence            4789999999999999999999653

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.19  E-value=0.52  Score=22.07  Aligned_cols=20  Identities=30%  Similarity=0.541  Sum_probs=15.4

Q ss_pred             ccccccCChHHHHHHHHHhc
Q psy4065          11 VCNQGFVRKEHLVRHRKRAH   30 (348)
Q Consensus        11 ~C~~~f~~~~~l~~H~~~~h   30 (348)
                      -|++.|.++.-|..|.+..|
T Consensus         7 gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           7 GCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTCCEESSHHHHHHHHHHGG
T ss_pred             CchhhhccHHHHHhHHHHHH
Confidence            48888888888888876655

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.90  E-value=0.65  Score=23.27  Aligned_cols=22  Identities=18%  Similarity=0.495  Sum_probs=15.4

Q ss_pred             cCcccCcchhhcCCHHHHHHHH
Q psy4065         113 RPFQCDVCNQGFVRKEHLVRHR  134 (348)
Q Consensus       113 ~~~~C~~C~~~f~~~~~L~~H~  134 (348)
                      +-|.|..|-+..++...|.+|+
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~   27 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHM   27 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHH
Confidence            5566777777777777777776

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=81.15  E-value=0.13  Score=29.41  Aligned_cols=42  Identities=17%  Similarity=0.526  Sum_probs=23.7

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCCCC--CCCCCccccccccc
Q psy4065           5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG--AEAKPFSCSVCGKT   51 (348)
Q Consensus         5 ~~y~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~--~~~~~~~C~~C~~~   51 (348)
                      +.|+|..|++.+.-...-..+     ++.+...  .-..-|.|++|+..
T Consensus         2 ~ky~C~~CgyiYd~~~Gd~~~-----gi~pGT~F~~LP~dw~CP~C~a~   45 (53)
T d1iroa_           2 KKYTCTVCGYIYNPEDGDPDN-----GVNPGTDFKDIPDDWVCPLCGVG   45 (53)
T ss_dssp             CCEEETTTCCEECTTTCBGGG-----TBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             CCeEcCCCCcEECcccCCccc-----CCCCCCCHHHCCCCCCCcCCCCc
Confidence            579999999998644332221     1111110  01234899999864

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=80.67  E-value=0.11  Score=37.07  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=19.7

Q ss_pred             CcchhhHHhhhhhHHHHHHHHHh
Q psy4065         288 PKCDVCKKVFSRRSHLLRHLKRL  310 (348)
Q Consensus       288 y~C~~C~~~f~~~~~L~~H~~~~  310 (348)
                      |+|..|++ |.+..+|.+||+.|
T Consensus       147 YKCe~CgK-YvDie~~~~H~k~H  168 (218)
T d2czra1         147 YKCEECGK-YVDIENLEAHLREH  168 (218)
T ss_dssp             EECTTTCC-EEEGGGHHHHHHTT
T ss_pred             eehhhcCc-eecHHHHHHHHHHc
Confidence            89999997 78899999999874

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.61  E-value=0.67  Score=31.55  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=26.8

Q ss_pred             CcccCcccCcchhhcCCHHHHHHHHHHhCCC
Q psy4065         110 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDL  140 (348)
Q Consensus       110 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  140 (348)
                      .-..+..|.+|.+.|.+...+..||+..|+.
T Consensus        11 ~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~F   41 (121)
T d1wira_          11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQF   41 (121)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHHHSSCC
T ss_pred             CCcccceecccCCccCCHHHHHHHHHHhhCC
Confidence            3347789999999999999999999999873

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.05  E-value=0.31  Score=26.57  Aligned_cols=29  Identities=24%  Similarity=0.604  Sum_probs=23.1

Q ss_pred             CCCccccccccccCCHHHHHHHH--HHhhhh
Q psy4065          40 AKPFSCSVCGKTFTRREHLRRHQ--QIHARE   68 (348)
Q Consensus        40 ~~~~~C~~C~~~f~~~~~l~~H~--~~h~~~   68 (348)
                      ..+-.|.+|+..|..+..++.|+  +.|-..
T Consensus         4 gp~~eC~lC~vKYs~~~SvrdHiFskqHI~~   34 (48)
T d2yrka1           4 GTKPECTLCGVKYSARLSIRDHIFSKQHISK   34 (48)
T ss_dssp             CCCSCCTTTTCCCCSSSCHHHHHTSHHHHHH
T ss_pred             CCcccCcccceeeeeecchHhhhhhHHHHHH
Confidence            34578999999999999999998  445443