Psyllid ID: psy4084

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT
Secondary Structure (PSIPRED)
ccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHcccccccccHcccccccHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccEccccc
Coil and Loop (DISEMBL)
msecmgkftEYQVIRKHIRTFHSDRQFACHmcikvfpsqdKLRMHMLSDRQFACHMcikvfpsqdKLRMHMLSGLQTFDLKSKLCT
Flexible Loop (DISEMBL)
msecmgkfTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMHMLsglqtfdlksklct
Low Complexity Region (SEG)
MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT
Disordered region (IsUnstruct)
*****GKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMHMLSGLQTF********
Disordered Region (DISOPRED)
MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC*
Disordered Region (DISEMBL)
MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT
Disordered Region (DISPRO)
*****GKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS**C*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	86	2.2.26 [Sep-21-2011]
A2BID7	1121	PR domain zinc finger pro	yes	N/A	0.790	0.060	0.492	9e-11
B4F6U4	1173	PR domain zinc finger pro	yes	N/A	0.790	0.057	0.478	2e-10
Q3UTQ7	1184	PR domain zinc finger pro	no	N/A	0.790	0.057	0.464	7e-10
Q5RAX9	1117	PR domain zinc finger pro	yes	N/A	0.790	0.060	0.464	8e-10
Q9NQV6	1147	PR domain zinc finger pro	yes	N/A	0.790	0.059	0.464	8e-10
Q6ZMW2	699	Zinc finger protein 782 O	no	N/A	0.813	0.100	0.301	9e-06
C9JN71	531	Zinc finger protein 878 O	no	N/A	0.965	0.156	0.302	1e-05
Q8TC21	504	Zinc finger protein 596 O	no	N/A	0.779	0.132	0.328	1e-05
O15156	539	Zinc finger and BTB domai	no	N/A	0.918	0.146	0.289	3e-05
P15619	869	Serendipity locus protein	no	N/A	0.883	0.087	0.308	3e-05

>sp|A2BID7|PRD10_DANRE PR domain zinc finger protein 10 OS=Danio rerio GN=prdm10 PE=3 SV=2

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
           C   FT++  ++KH+R+FHS++ F C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct: 590 CKKSFTDFIQVKKHVRSFHSEKVFQCSECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 649

Query: 61  FPSQDKLRMHM 71
           F  +DKLR HM
Sbjct: 650 FKRKDKLREHM 660

May be involved in transcriptional regulation.
Danio rerio (taxid: 7955)

>sp|B4F6U4|PRD10_XENTR PR domain zinc finger protein 10 OS=Xenopus tropicalis GN=prdm10 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
           C  +FT++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct: 650 CKKRFTDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 709

Query: 61  FPSQDKLRMHM 71
           F  +DKLR HM
Sbjct: 710 FKRKDKLREHM 720

May be involved in transcriptional regulation.

Xenopus tropicalis (taxid: 8364)

>sp|Q3UTQ7|PRD10_MOUSE PR domain zinc finger protein 10 OS=Mus musculus GN=Prdm10 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
           C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct: 611 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 670

Query: 61  FPSQDKLRMHM 71
           F  +DKLR HM
Sbjct: 671 FKRKDKLREHM 681

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q5RAX9|PRD10_PONAB PR domain zinc finger protein 10 OS=Pongo abelii GN=PRDM10 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
           C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct: 591 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 650

Query: 61  FPSQDKLRMHM 71
           F  +DKLR HM
Sbjct: 651 FKRKDKLREHM 661

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q9NQV6|PRD10_HUMAN PR domain zinc finger protein 10 OS=Homo sapiens GN=PRDM10 PE=1 SV=3

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
           C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct: 621 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 680

Query: 61  FPSQDKLRMHM 71
           F  +DKLR HM
Sbjct: 681 FKRKDKLREHM 691

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6ZMW2|ZN782_HUMAN Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 2   SECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMCI 58
           +EC   F+E  V+RKH RT   ++ + C+ C + F  +  LR+H      ++ + C  C 
Sbjct: 621 NECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCG 680

Query: 59  KVFPSQDKLRMHM 71
           + F  +  LR H 
Sbjct: 681 RTFSQKSSLREHQ 693

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|C9JN71|ZN878_HUMAN Zinc finger protein 878 OS=Homo sapiens GN=ZNF878 PE=3 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 3   ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMCIK 59
           +C   F    V++KHIRT   ++ + C  C KVF    +L+MH      ++ + C  C K
Sbjct: 399 QCGKAFRSASVLQKHIRTHTGEKPYGCKQCGKVFRVASQLKMHERTHTGEKPYECKQCGK 458

Query: 60  VFPSQDKLRMHMLSGLQTFDLKSKLC 85
            F S + +R H  +       K K C
Sbjct: 459 AFISSNSIRYHKRTHTGEKPYKCKQC 484

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8TC21|ZN596_HUMAN Zinc finger protein 596 OS=Homo sapiens GN=ZNF596 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMCIKV 60
           C   FTE  V+++H R    ++ + CH+C K F     LR H      ++ + CH+C K 
Sbjct: 368 CGKAFTESSVLKRHERIHTGEKPYECHVCGKAFTESSDLRRHERTHTGEKPYECHLCGKA 427

Query: 61  FPSQDKLRMH 70
           F     LR H
Sbjct: 428 FNHSSVLRRH 437

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|O15156|ZBT7B_HUMAN Zinc finger and BTB domain-containing protein 7B OS=Homo sapiens GN=ZBTB7B PE=1 SV=2

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMCIKV 60
           C  +FT    ++ H+R    +R ++C  C   F     L+ HM     DR + CH+C K 
Sbjct: 379 CGVRFTRNDKLKIHMRKHTGERPYSCPHCPARFLHSYDLKNHMHLHTGDRPYECHLCHKA 438

Query: 61  FPSQDKLRMHMLSGLQTFDLKSK 83
           F  +D L+ H L G    +++++
Sbjct: 439 FAKEDHLQRH-LKGQNCLEVRTR 460

Transcription regulator that acts as a key regulator of lineage commitment of immature T-cell precursors. Necessary and sufficient for commitment of CD4 lineage, while its absence causes CD8 commitment. Development of immature T-cell precursors (thymocytes) to either the CD4 helper or CD8 killer T-cell lineages correlates precisely with their T-cell receptor specificity for major histocompatibility complex class II or class I molecules, respectively. Transcriptional repressor of the collagen COL1A1 and COL1A2 genes. May also function as a repressor of fibronectin and possibly other extracellular matrix genes.

Homo sapiens (taxid: 9606)

>sp|P15619|SRYC_DROME Serendipity locus protein H-1 OS=Drosophila melanogaster GN=wdn PE=1 SV=2

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 3   ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMH---MLSDRQFACHMCIK 59
           EC  +F E   +++H +     R + C  C K++ ++  L++H    L  R FAC +C K
Sbjct: 390 ECQKRFQERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPFACTVCDK 449

Query: 60  VFPSQDKLRMH--MLSGLQTF 78
            F S  KL+ H  + +G++ F
Sbjct: 450 SFISNSKLKQHSNIHTGMRPF 470

May belong to a complex set of multifingered proteins which play an important role in gene activation or regulation at early embryonic stages through a maximal accumulation of their transcripts (or protein product) in the mature oocyte.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
242046692	1331	zinc finger protein, putative [Ixodes sc	0.779	0.050	0.514	1e-13
427794497	1326	Putative transcription factor blimp-1/pr	0.779	0.050	0.5	2e-13
291222815	1357	PREDICTED: PR domain containing 4-like [	0.802	0.050	0.541	1e-12
260830234	1263	hypothetical protein BRAFLDRAFT_125682 [	0.802	0.054	0.513	2e-12
270014032	999	hypothetical protein TcasGA2_TC012726 [T	0.779	0.067	0.528	6e-12
390349373	1358	PREDICTED: uncharacterized protein LOC59	0.790	0.050	0.478	7e-12
405951157	2051	PR domain zinc finger protein 10 [Crasso	0.802	0.033	0.430	1e-11
91090958	1010	PREDICTED: similar to PR domain containi	0.779	0.066	0.528	1e-10
307175934	961	PR domain zinc finger protein 10 [Campon	0.790	0.070	0.521	7e-10
345488315	1030	PREDICTED: PR domain zinc finger protein	0.790	0.066	0.492	7e-10

>gi|242046692|ref|XP_002400869.1| zinc finger protein, putative [Ixodes scapularis] gi|215498716|gb|EEC08210.1| zinc finger protein, putative [Ixodes scapularis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 5    MGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML---SDRQFACHMCIKVF 61
            + KF EY  +RKHIR FH++++F C  C KVFP QDKL++HML     R+F C +C K F
Sbjct: 985  LQKFLEYNQVRKHIRAFHTNQRFPCPQCPKVFPRQDKLKLHMLCHSEHREFLCALCGKQF 1044

Query: 62   PSQDKLRMHM 71
              +DKL+ HM
Sbjct: 1045 KRKDKLKEHM 1054

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427794497|gb|JAA62700.1| Putative transcription factor blimp-1/prdi-bf1, partial [Rhipicephalus pulchellus]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML---SDRQFACHMCIKV 60
           C  KF EY  +RKHIR FH++++F C +C KVFP QDKL++HML     R+F C +C + 
Sbjct: 926 CGKKFPEYNQVRKHIRAFHTNQRFLCELCPKVFPRQDKLKLHMLCHSEHREFLCALCGRQ 985

Query: 61  FPSQDKLRMH 70
           F  +DKL+ H
Sbjct: 986 FKRKDKLKEH 995

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291222815|ref|XP_002731410.1| PREDICTED: PR domain containing 4-like [Saccoglossus kowalevskii]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
           C   FTEY  +RKHIR FHS +++ C  C KVFP  DKL++HML  SDR+ F C  C K 
Sbjct: 803 CSKTFTEYPQVRKHIRGFHSSKEYPCPECEKVFPRPDKLKLHMLRHSDRKDFLCANCGKQ 862

Query: 61  FPSQDKLRMHML 72
           F  +DKL+ HML
Sbjct: 863 FKRKDKLKEHML 874

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|260830234|ref|XP_002610066.1| hypothetical protein BRAFLDRAFT_125682 [Branchiostoma floridae] gi|229295429|gb|EEN66076.1| hypothetical protein BRAFLDRAFT_125682 [Branchiostoma floridae]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
           C   F E+  +RKHIR+FHSD+ + C +C K FP  DKL++HML  SDR+ F C  C K 
Sbjct: 763 CSKTFPEFVQVRKHIRSFHSDKMYQCQVCEKAFPRPDKLKLHMLKHSDRRDFLCANCGKQ 822

Query: 61  FPSQDKLRMHML 72
           F  +DKL+ HML
Sbjct: 823 FKRKDKLKEHML 834

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270014032|gb|EFA10480.1| hypothetical protein TcasGA2_TC012726 [Tribolium castaneum]

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SD-RQFACHMCIKV 60
           C   F +Y +IRKHIR FH D++ AC  CIK+FP+ DKL+MH+L  SD R+F C  C K 
Sbjct: 661 CSKVFKKYSIIRKHIRAFHCDQKHACPHCIKMFPTLDKLKMHLLRHSDHREFLCADCGKQ 720

Query: 61  FPSQDKLRMH 70
           F  +DKL+ H
Sbjct: 721 FKRKDKLKEH 730

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390349373|ref|XP_796389.3| PREDICTED: uncharacterized protein LOC591744 [Strongylocentrotus purpuratus]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML---SDRQFACHMCIKV 60
           C  +F+EY  +RKHIR FHS ++F C  C K+FP  DKL++HML   + + F C  C K 
Sbjct: 773 CGKRFSEYNHVRKHIRGFHSMKEFPCMHCHKIFPRPDKLKLHMLRHSNQKDFLCANCGKQ 832

Query: 61  FPSQDKLRMHM 71
           F  +DKL+ HM
Sbjct: 833 FKRKDKLKEHM 843

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|405951157|gb|EKC19094.1| PR domain zinc finger protein 10 [Crassostrea gigas]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 3   ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML---SDRQFACHMCIK 59
           +C  +F ++  +RKH+R+FHS++++ C  C KVFP  DKL++HML   S R+F C  C +
Sbjct: 891 DCERQFEDFLSMRKHLRSFHSNKEYPCPECKKVFPRPDKLKLHMLRHSSHREFMCETCGR 950

Query: 60  VFPSQDKLRMHM 71
            F  +DKL+ H+
Sbjct: 951 QFKRKDKLKEHI 962

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|91090958|ref|XP_974598.1| PREDICTED: similar to PR domain containing 10 [Tribolium castaneum]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SD-RQFACHMCIKV 60
           C   F +Y +IRKHIR FH D++ AC  CIK+FP+ DKL+MH+L  SD R+F C  C K 
Sbjct: 661 CSKVFKKYSIIRKHIRAFHCDQKHACPHCIKMFPTLDKLKMHLLRHSDHREFLCADCGKQ 720

Query: 61  FPSQDKLRMH 70
           F  +DKL+ H
Sbjct: 721 FKRKDKLKEH 730

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175934|gb|EFN65744.1| PR domain zinc finger protein 10 [Camponotus floridanus]

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SD-RQFACHMCIKV 60
           C   F +Y VIRKHIR  H +R+  C  C K FP+ DKLRMH+L  SD R+F C  C K 
Sbjct: 653 CQRTFIKYSVIRKHIRAHHCERKHKCQHCAKRFPTVDKLRMHLLKHSDHREFHCANCGKR 712

Query: 61  FPSQDKLRMHM 71
           F  +DKL+ HM
Sbjct: 713 FKRKDKLKEHM 723

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488315|ref|XP_003425881.1| PREDICTED: PR domain zinc finger protein 10-like [Nasonia vitripennis]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 4   CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SD-RQFACHMCIKV 60
           C   FT Y + RKH R  H DR+  C  C+K FP+ DKLRMH+L  SD R+F C  C K 
Sbjct: 704 CPKSFTSYALTRKHARAHHFDRKHECQFCLKCFPAADKLRMHLLKHSDRREFQCANCGKQ 763

Query: 61  FPSQDKLRMHM 71
           F  +DKL+ H+
Sbjct: 764 FKRKDKLKDHV 774

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
ZFIN|ZDB-GENE-050419-74	1188	prdm10 "PR domain containing 1	0.790	0.057	0.492	2.9e-12
UNIPROTKB|E9PRS0	865	PRDM10 "PR domain zinc finger	0.790	0.078	0.464	1.7e-11
UNIPROTKB|F1S6E9	958	PRDM10 "Uncharacterized protei	0.790	0.070	0.464	2e-11
UNIPROTKB|E9PLV1	1117	PRDM10 "PR domain zinc finger	0.790	0.060	0.464	2.4e-11
RGD|1560384	1119	Prdm10 "PR domain containing 1	0.790	0.060	0.464	2.4e-11
UNIPROTKB|J9P7L4	1138	PRDM10 "Uncharacterized protei	0.790	0.059	0.464	2.5e-11
UNIPROTKB|Q9NQV6	1147	PRDM10 "PR domain zinc finger	0.790	0.059	0.464	2.5e-11
UNIPROTKB|E1BQM4	1147	PRDM10 "Uncharacterized protei	0.790	0.059	0.464	2.5e-11
UNIPROTKB|E1BE45	1154	PRDM10 "Uncharacterized protei	0.790	0.058	0.464	2.5e-11
UNIPROTKB|E2RKT8	1182	PRDM10 "Uncharacterized protei	0.790	0.057	0.464	2.6e-11

ZFIN|ZDB-GENE-050419-74 prdm10 "PR domain containing 10" [Danio rerio (taxid:7955)]

 Score = 178 (67.7 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 35/71 (49%), Positives = 46/71 (64%)

Query:     4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
             C   FT++  ++KH+R+FHS++ F C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct:   660 CKKSFTDFIQVKKHVRSFHSEKVFQCSECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 719

Query:    61 FPSQDKLRMHM 71
             F  +DKLR HM
Sbjct:   720 FKRKDKLREHM 730

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E9PRS0 PRDM10 "PR domain zinc finger protein 10" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query:     4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
             C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct:   334 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 393

Query:    61 FPSQDKLRMHM 71
             F  +DKLR HM
Sbjct:   394 FKRKDKLREHM 404

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1S6E9 PRDM10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query:     4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
             C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct:   625 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 684

Query:    61 FPSQDKLRMHM 71
             F  +DKLR HM
Sbjct:   685 FKRKDKLREHM 695

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E9PLV1 PRDM10 "PR domain zinc finger protein 10" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query:     4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
             C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct:   591 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 650

Query:    61 FPSQDKLRMHM 71
             F  +DKLR HM
Sbjct:   651 FKRKDKLREHM 661

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1560384 Prdm10 "PR domain containing 10" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query:     4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
             C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct:   546 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 605

Query:    61 FPSQDKLRMHM 71
             F  +DKLR HM
Sbjct:   606 FKRKDKLREHM 616

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P7L4 PRDM10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 169 (64.5 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query:     4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
             C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct:   603 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 662

Query:    61 FPSQDKLRMHM 71
             F  +DKLR HM
Sbjct:   663 FKRKDKLREHM 673

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9NQV6 PRDM10 "PR domain zinc finger protein 10" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query:     4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
             C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct:   621 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 680

Query:    61 FPSQDKLRMHM 71
             F  +DKLR HM
Sbjct:   681 FKRKDKLREHM 691

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BQM4 PRDM10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 169 (64.5 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query:     4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
             C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct:   606 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 665

Query:    61 FPSQDKLRMHM 71
             F  +DKLR HM
Sbjct:   666 FKRKDKLREHM 676

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BE45 PRDM10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query:     4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
             C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct:   621 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 680

Query:    61 FPSQDKLRMHM 71
             F  +DKLR HM
Sbjct:   681 FKRKDKLREHM 691

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RKT8 PRDM10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 169 (64.5 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query:     4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML--SDRQ-FACHMCIKV 60
             C  +F ++  ++KH+R+FHS++ + C  C K F   DKLR+HML  SDR+ F C  C K 
Sbjct:   609 CKKRFPDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQ 668

Query:    61 FPSQDKLRMHM 71
             F  +DKLR HM
Sbjct:   669 FKRKDKLREHM 679

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
KOG2462|consensus	279		99.95
KOG2462|consensus	279		99.91
KOG3623|consensus	1007		99.67
KOG3576|consensus	267		99.6
KOG3623|consensus	1007		99.6
KOG3576|consensus	267		99.59
KOG1074|consensus	958		99.57
KOG3608|consensus	467		99.56
KOG1074|consensus	958		99.54
PHA00733	128	hypothetical protein	99.4
KOG3608|consensus	467		99.39
PLN03086	567	PRLI-interacting factor K; Provisional	99.35
PHA02768	55	hypothetical protein; Provisional	99.25
PHA02768	55	hypothetical protein; Provisional	99.2
PHA00616	44	hypothetical protein	99.16
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.14
PHA00733	128	hypothetical protein	99.0
PLN03086	567	PRLI-interacting factor K; Provisional	98.87
PHA00616	44	hypothetical protein	98.83
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.82
PHA00732	79	hypothetical protein	98.81
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.65
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.54
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.52
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.5
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.47
PHA00732	79	hypothetical protein	98.47
KOG3993|consensus	500		98.4
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.36
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	98.33
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.13
smart00355	26	ZnF_C2H2 zinc finger.	97.97
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.92
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.85
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.81
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.78
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.77
smart00355	26	ZnF_C2H2 zinc finger.	97.69
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.65
PRK04860	160	hypothetical protein; Provisional	97.44
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.37
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	97.23
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.22
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.17
PRK04860	160	hypothetical protein; Provisional	97.01
KOG3993|consensus	500		96.96
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.52
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	96.18
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.2
KOG1146|consensus	1406		94.97
COG1592	166	Rubrerythrin [Energy production and conversion]	94.82
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	94.38
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.28
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	93.97
KOG2893|consensus	341		93.85
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	93.75
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	93.69
COG4049	65	Uncharacterized protein containing archaeal-type C	93.65
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.6
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	93.55
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	93.23
smart00531	147	TFIIE Transcription initiation factor IIE.	93.2
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	92.88
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	92.48
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.45
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	92.43
PHA00626	59	hypothetical protein	92.32
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	92.08
KOG4167|consensus	907		92.06
KOG2785|consensus	390		92.03
PRK06266	178	transcription initiation factor E subunit alpha; V	91.87
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	91.66
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	91.43
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	90.4
KOG2893|consensus	341		90.39
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	90.24
PRK09678	72	DNA-binding transcriptional regulator; Provisional	90.11
COG5048	467	FOG: Zn-finger [General function prediction only]	90.04
KOG2231|consensus	669		89.85
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	89.79
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	89.68
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	89.52
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	89.5
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	89.39
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	89.36
COG5048	467	FOG: Zn-finger [General function prediction only]	88.4
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	87.71
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	86.89
KOG2186|consensus	276		86.83
KOG2785|consensus	390		86.44
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	86.02
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	85.81
KOG2231|consensus	669		85.72
KOG4173|consensus	253		84.45
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	84.17
KOG1146|consensus	1406		84.09
KOG2593|consensus	436		83.5
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	83.03
KOG2593|consensus	436		82.53
PF15269	54	zf-C2H2_7: Zinc-finger	81.97
PRK04023	1121	DNA polymerase II large subunit; Validated	81.85
PF04606	47	Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I	81.62
COG1198	730	PriA Primosomal protein N' (replication factor Y)	81.06
COG5236	493	Uncharacterized conserved protein, contains RING Z	80.88
KOG2482|consensus	423		80.29
KOG3408|consensus	129		80.18
PF10537	102	WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly	80.06

>KOG2462|consensus

Probab=99.95  E-value=5.7e-28  Score=126.62  Aligned_cols=84  Identities=25%  Similarity=0.478  Sum_probs=79.4

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      |++||+.|.+...|.+|+++|+  -+++|.+||+.|....-|+.|+++   +|||.|+.|+++|++.++|+.||++|.+.
T Consensus       164 C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~  241 (279)
T KOG2462|consen  164 CKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDV  241 (279)
T ss_pred             CCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCC
Confidence            7899999999999999999997  479999999999999999999997   99999999999999999999999999999


Q ss_pred             ccCCCCcCC
Q psy4084          78 FDLKSKLCT   86 (86)
Q Consensus        78 ~~~~c~~C~   86 (86)
                      +.|+|..|+
T Consensus       242 K~~qC~~C~  250 (279)
T KOG2462|consen  242 KKHQCPRCG  250 (279)
T ss_pred             ccccCcchh
Confidence            999999885

>KOG2462|consensus

Probab=99.91  E-value=1.2e-25  Score=117.93  Aligned_cols=74  Identities=30%  Similarity=0.548  Sum_probs=71.1

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      |.+||++|....-|+.|+|+|+||+||.|+.|++.|...++|+.||.+   .++|+|..|++.|+..+.|+.|....
T Consensus       190 C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  190 CGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             cccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence            789999999999999999999999999999999999999999999998   68999999999999999999998764

>KOG3623|consensus

Probab=99.67  E-value=4.1e-17  Score=95.59  Aligned_cols=86  Identities=23%  Similarity=0.481  Sum_probs=77.0

Q ss_pred             CcchhhhccChHHHHhhHHHHhC--CCceecccccccCCChHHHhhhhhC----------------Ccceeccccccccc
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHS--DRQFACHMCIKVFPSQDKLRMHMLS----------------DRQFACHMCIKVFP   62 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~--~~~~~c~~c~~~~~~~~~l~~h~~~----------------~~~~~C~~C~~~~~   62 (86)
                      |++|.+.+.+...|+.|+...+.  +..|.|..|...|.....|.+|+..                .+.|+|.+||++|.
T Consensus       213 cpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFK  292 (1007)
T KOG3623|consen  213 CPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFK  292 (1007)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhh
Confidence            78899999999999999885443  4568999999999999999999853                37799999999999


Q ss_pred             CHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          63 SQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        63 ~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ++..|..|+++|.+++||.|.+|.
T Consensus       293 fKHHLKEHlRIHSGEKPfeCpnCk  316 (1007)
T KOG3623|consen  293 FKHHLKEHLRIHSGEKPFECPNCK  316 (1007)
T ss_pred             hHHHHHhhheeecCCCCcCCcccc
Confidence            999999999999999999999984

>KOG3576|consensus

Probab=99.60  E-value=4.2e-16  Score=79.76  Aligned_cols=77  Identities=19%  Similarity=0.395  Sum_probs=54.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC--------------CcceecccccccccCHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS--------------DRQFACHMCIKVFPSQDK   66 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~--------------~~~~~C~~C~~~~~~~~~   66 (86)
                      |..||+.|....+|++|+|+|+|.+||.|..|++.|...-+|..|...              .+.|.|+.||.+......
T Consensus       148 ct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~  227 (267)
T KOG3576|consen  148 CTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEV  227 (267)
T ss_pred             HhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhH
Confidence            445777777777777777777777777777777777777777666542              355777777777777777


Q ss_pred             HHHHHHhCCCC
Q psy4084          67 LRMHMLSGLQT   77 (86)
Q Consensus        67 l~~h~~~~~~~   77 (86)
                      +..|+..|+-.
T Consensus       228 ~~~h~~~~hp~  238 (267)
T KOG3576|consen  228 YYLHLKLHHPF  238 (267)
T ss_pred             HHHHHHhcCCC
Confidence            77777766543

>KOG3623|consensus

Probab=99.60  E-value=2.6e-16  Score=92.31  Aligned_cols=72  Identities=24%  Similarity=0.548  Sum_probs=63.4

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHML   72 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~   72 (86)
                      |+.|+++|...+.|-+|.-.|+|.+||+|.+|.+.|..+-.|..|++.   ++||+|..|++.|...+...+||.
T Consensus       897 CDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  897 CDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             HHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            678899998888899998899999999999999999998888888875   889999999999998888888885

>KOG3576|consensus

Probab=99.59  E-value=2.1e-16  Score=80.86  Aligned_cols=86  Identities=21%  Similarity=0.405  Sum_probs=69.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCC--
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGL--   75 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~--   75 (86)
                      |.+||+.|....-|.+|+.-|...+.+-|..||++|...-.|.+|+++   .+||+|..|+++|...-.|..|++.-+  
T Consensus       120 CrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv  199 (267)
T KOG3576|consen  120 CRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGV  199 (267)
T ss_pred             eehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCc
Confidence            677888888888888888888888888888899988888888888886   688899999999888888888887532  


Q ss_pred             ---------CCccCCCCcCC
Q psy4084          76 ---------QTFDLKSKLCT   86 (86)
Q Consensus        76 ---------~~~~~~c~~C~   86 (86)
                               +++-|.|+.|+
T Consensus       200 ~~~yaykerr~kl~vcedcg  219 (267)
T KOG3576|consen  200 QHQYAYKERRAKLYVCEDCG  219 (267)
T ss_pred             hHHHHHHHhhhheeeecccC
Confidence                     34446676664

>KOG1074|consensus

Probab=99.57  E-value=1.5e-15  Score=90.05  Aligned_cols=46  Identities=24%  Similarity=0.617  Sum_probs=35.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM   46 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~   46 (86)
                      |..|++.|.+.+.|+.|+|+|+|++||+|++||..|.++.+|..|.
T Consensus       356 Cr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~  401 (958)
T KOG1074|consen  356 CRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHF  401 (958)
T ss_pred             hhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeee
Confidence            5677788888888888888888888888888888887777776654

>KOG3608|consensus

Probab=99.56  E-value=3.4e-15  Score=81.76  Aligned_cols=84  Identities=24%  Similarity=0.437  Sum_probs=63.4

Q ss_pred             chhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC-------------------------------Ccc
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS-------------------------------DRQ   51 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~-------------------------------~~~   51 (86)
                      .|-+.+.++..|..|+++|++++...|+.||..|.....|..|.+.                               ..-
T Consensus       184 ~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~  263 (467)
T KOG3608|consen  184 MCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNC  263 (467)
T ss_pred             hhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhc
Confidence            3667778888888888888888888888888888888777777642                               234


Q ss_pred             eecccccccccCHHHHHHHHHh-CCCCccCCCCcCC
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLS-GLQTFDLKSKLCT   86 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~-~~~~~~~~c~~C~   86 (86)
                      |.|+.|.-+....+.|..|++. |.+++||+|+.|+
T Consensus       264 ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd  299 (467)
T KOG3608|consen  264 YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECD  299 (467)
T ss_pred             ccccccccCCCChHHHHHHHHhhhccCCCccccchh
Confidence            5666677777777777777775 7788999998875

>KOG1074|consensus

Probab=99.54  E-value=7.1e-16  Score=91.32  Aligned_cols=75  Identities=28%  Similarity=0.571  Sum_probs=69.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC-------Ccceecc---cccccccCHHHHHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS-------DRQFACH---MCIKVFPSQDKLRMH   70 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~-------~~~~~C~---~C~~~~~~~~~l~~h   70 (86)
                      |..|-+...-++.|+.|.|+|+|++||+|.+|++.|.++.+|+.|+..       ..++.|+   +|-+.|.....|..|
T Consensus       608 CiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lpQh  687 (958)
T KOG1074|consen  608 CIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLPQH  687 (958)
T ss_pred             eeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccccce
Confidence            778999999999999999999999999999999999999999999975       3468899   899999999999999


Q ss_pred             HHhCC
Q psy4084          71 MLSGL   75 (86)
Q Consensus        71 ~~~~~   75 (86)
                      ++.|.
T Consensus       688 IriH~  692 (958)
T KOG1074|consen  688 IRIHL  692 (958)
T ss_pred             EEeec
Confidence            99987

>PHA00733 hypothetical protein

Probab=99.40  E-value=8.4e-13  Score=64.28  Aligned_cols=76  Identities=18%  Similarity=0.323  Sum_probs=59.3

Q ss_pred             CcchhhhccChHHHHhh--HH---HHhCCCceecccccccCCChHHHhhhhhC-CcceecccccccccCHHHHHHHHHhC
Q psy4084           1 MSECMGKFTEYQVIRKH--IR---TFHSDRQFACHMCIKVFPSQDKLRMHMLS-DRQFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h--~~---~~~~~~~~~c~~c~~~~~~~~~l~~h~~~-~~~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      |.+|++.|.....|..+  ++   .+.+.+||.|..|++.|.....|..|+.. ..++.|..|++.|.....|..|+...
T Consensus        43 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~~H~~~~  122 (128)
T PHA00733         43 RAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKK  122 (128)
T ss_pred             HHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHHHHHHHh
Confidence            34566666666555544  22   23347899999999999999999999885 56799999999999999999999875


Q ss_pred             CC
Q psy4084          75 LQ   76 (86)
Q Consensus        75 ~~   76 (86)
                      ++
T Consensus       123 h~  124 (128)
T PHA00733        123 HN  124 (128)
T ss_pred             cC
Confidence            53

>KOG3608|consensus

Probab=99.39  E-value=6.8e-13  Score=73.00  Aligned_cols=80  Identities=18%  Similarity=0.404  Sum_probs=58.6

Q ss_pred             cchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC----CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084           2 SECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS----DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus         2 ~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~----~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ..|.+.|.....|+.|++.|.  +-|.|+.|..+....++|..|++.    ++||+|..|.+.+.+.+.|+.|...|. +
T Consensus       241 ~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~  317 (467)
T KOG3608|consen  241 AQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-K  317 (467)
T ss_pred             HHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-c
Confidence            344455555555555555543  347888888888888888888875    788899888888888888888888775 6


Q ss_pred             ccCCCCc
Q psy4084          78 FDLKSKL   84 (86)
Q Consensus        78 ~~~~c~~   84 (86)
                      ..|.|+.
T Consensus       318 ~~y~C~h  324 (467)
T KOG3608|consen  318 TVYQCEH  324 (467)
T ss_pred             cceecCC
Confidence            7788775

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.35  E-value=2.9e-12  Score=74.61  Aligned_cols=80  Identities=20%  Similarity=0.416  Sum_probs=67.1

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccC----------HHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPS----------QDKL   67 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~----------~~~l   67 (86)
                      |+.|++.|. ...|..|+..++  .++.|+ |+..+ ....|..|+..   .+++.|+.|+..+..          ...|
T Consensus       456 C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~L  530 (567)
T PLN03086        456 CEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGM  530 (567)
T ss_pred             CCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhH
Confidence            788999996 677999999975  789999 99654 66888899875   789999999999852          4589


Q ss_pred             HHHHHhCCCCccCCCCcCC
Q psy4084          68 RMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        68 ~~h~~~~~~~~~~~c~~C~   86 (86)
                      ..|... .+.+++.|..|+
T Consensus       531 t~HE~~-CG~rt~~C~~Cg  548 (567)
T PLN03086        531 SEHESI-CGSRTAPCDSCG  548 (567)
T ss_pred             HHHHHh-cCCcceEccccC
Confidence            999988 499999999996

>PHA02768 hypothetical protein; Provisional

Probab=99.25  E-value=3.2e-12  Score=53.08  Aligned_cols=40  Identities=10%  Similarity=0.257  Sum_probs=27.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKL   42 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l   42 (86)
                      |+.||+.|...++|..|+++|+  +++.|..|++.|...+.|
T Consensus         8 C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          8 CPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            6677777777777777777776  466777777766654443

>PHA02768 hypothetical protein; Provisional

Probab=99.20  E-value=1.8e-11  Score=50.87  Aligned_cols=38  Identities=11%  Similarity=0.447  Sum_probs=18.3

Q ss_pred             eecccccccCCChHHHhhhhhC-CcceecccccccccCH
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLS-DRQFACHMCIKVFPSQ   64 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~-~~~~~C~~C~~~~~~~   64 (86)
                      |+|+.||+.|...+.|..|++. .++++|..|++.|...
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~~~   44 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRT   44 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcCCcccCCcccceeccc
Confidence            4455555555555555555544 2344555555544433

>PHA00616 hypothetical protein

Probab=99.16  E-value=1.5e-11  Score=48.87  Aligned_cols=34  Identities=21%  Similarity=0.388  Sum_probs=31.5

Q ss_pred             ceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      ||+|+.||+.|.....|..|+++|+++.++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            6899999999999999999999999999998763

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.14  E-value=4.9e-11  Score=42.85  Aligned_cols=25  Identities=32%  Similarity=0.805  Sum_probs=22.8

Q ss_pred             HHHhhHHHHhCCCceecccccccCC
Q psy4084          13 VIRKHIRTFHSDRQFACHMCIKVFP   37 (86)
Q Consensus        13 ~l~~h~~~~~~~~~~~c~~c~~~~~   37 (86)
                      +|..|+++|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4889999999999999999998875

...

>PHA00733 hypothetical protein

Probab=99.00  E-value=4.7e-10  Score=54.75  Aligned_cols=74  Identities=12%  Similarity=0.257  Sum_probs=54.8

Q ss_pred             hHHHHhhHHHHhCCCceecccccccCCChHHHhhh------hhC--CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084          11 YQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMH------MLS--DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        11 ~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h------~~~--~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      .+.|.++-......+++.|.+|...+.....|..+      +..  .+||.|+.|++.|.....|..|++.+  +.++.|
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C  102 (128)
T PHA00733         25 LEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVC  102 (128)
T ss_pred             HHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccC
Confidence            34444443434456788999998877776655544      222  67999999999999999999999976  356899


Q ss_pred             CcCC
Q psy4084          83 KLCT   86 (86)
Q Consensus        83 ~~C~   86 (86)
                      ..|+
T Consensus       103 ~~Cg  106 (128)
T PHA00733        103 PVCG  106 (128)
T ss_pred             CCCC
Confidence            9885

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.87  E-value=2.2e-09  Score=63.01  Aligned_cols=60  Identities=20%  Similarity=0.458  Sum_probs=51.0

Q ss_pred             CCceecccccccCCChHHHhhhhhC-CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          24 DRQFACHMCIKVFPSQDKLRMHMLS-DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        24 ~~~~~c~~c~~~~~~~~~l~~h~~~-~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ++.+.|+.|++.|. ...+..|+.. .+++.|+ ||..+ ....|..|+.+|...+++.|.+|+
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~  511 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFHEPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCG  511 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcCCCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCC
Confidence            34568999999986 5778899886 6889999 99755 668999999999999999999995

>PHA00616 hypothetical protein

Probab=98.83  E-value=2.8e-09  Score=42.39  Aligned_cols=32  Identities=16%  Similarity=0.364  Sum_probs=29.0

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccc
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMC   32 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c   32 (86)
                      |+.||+.|..++.|..|++.|++++++.+..-
T Consensus         4 C~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~   35 (44)
T PHA00616          4 CLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYF   35 (44)
T ss_pred             cchhhHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence            78999999999999999999999999887653

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.82  E-value=2e-09  Score=38.60  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=19.4

Q ss_pred             HHHHHHHhCCCCccCCCCcCC
Q psy4084          66 KLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        66 ~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      +|..|+++|+++++|.|+.|+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~   21 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCG   21 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSS
T ss_pred             CHHHHhhhcCCCCCCCCCCCc
Confidence            588999999999999999996

...

>PHA00732 hypothetical protein

Probab=98.81  E-value=4.6e-09  Score=47.22  Aligned_cols=42  Identities=21%  Similarity=0.393  Sum_probs=24.8

Q ss_pred             CcchhhhccChHHHHhhHHH-HhCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRT-FHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~-~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |..||+.|.+...|..|++. |.+   +.|+.|++.|.   .+..|+.+
T Consensus         4 C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          4 CPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhcc
Confidence            56667777777777777663 432   35666666665   24455543

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.65  E-value=2.1e-08  Score=34.80  Aligned_cols=23  Identities=35%  Similarity=0.735  Sum_probs=19.8

Q ss_pred             eecccccccccCHHHHHHHHHhC
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            67899999999999999998763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.54  E-value=9.9e-08  Score=44.49  Aligned_cols=70  Identities=23%  Similarity=0.334  Sum_probs=21.9

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC--CcceecccccccccCHHHHHHHHHhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS--DRQFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      |..|+..|.+...|..|+...++-..-..    ..+.....+......  ...+.|..|+..|.+...|..||+.+
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDIPDQ----KYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ---------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccc----cccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            78899999999999999987665432111    111122222223222  34689999999999999999999974

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.52  E-value=1.1e-07  Score=34.20  Aligned_cols=26  Identities=38%  Similarity=0.560  Sum_probs=22.9

Q ss_pred             ceecccccccccCHHHHHHHHHhCCC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      ||.|..|++.|.+...|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            57899999999999999999988754

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.50  E-value=2.4e-07  Score=38.80  Aligned_cols=47  Identities=28%  Similarity=0.441  Sum_probs=30.6

Q ss_pred             ceecccccccCCChHHHhhhhhC-----CcceecccccccccCHHHHHHHHHhCC
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLS-----DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~-----~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      .|.|+.|++ ......|..|...     .+.+.|+.|...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            367777777 4445667777654     34577888876533  47788887654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.47  E-value=1.5e-07  Score=32.66  Aligned_cols=24  Identities=42%  Similarity=0.755  Sum_probs=19.0

Q ss_pred             eecccccccccCHHHHHHHHHhCC
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      |.|+.|++.|.+...|..|+.+++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            679999999999999999998753

...

>PHA00732 hypothetical protein

Probab=98.47  E-value=2.3e-07  Score=41.77  Aligned_cols=47  Identities=23%  Similarity=0.424  Sum_probs=39.7

Q ss_pred             ceecccccccCCChHHHhhhhhC-CcceecccccccccCHHHHHHHHHhCC
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLS-DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      ||.|..|++.|.....|..|+.. ..++.|+.|++.|.   .+..|++++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTLTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCCCccCCCCCEeC---ChhhhhcccC
Confidence            57899999999999999999974 56779999999998   4778886653

>KOG3993|consensus

Probab=98.40  E-value=9.5e-08  Score=54.29  Aligned_cols=76  Identities=28%  Similarity=0.441  Sum_probs=54.8

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC--------------------------------
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS--------------------------------   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~--------------------------------   48 (86)
                      |..|...|.....|-.|.-.-.-..-|.|+.|+++|.-..+|..|.+=                                
T Consensus       270 CqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg  349 (500)
T KOG3993|consen  270 CQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSG  349 (500)
T ss_pred             HHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccC
Confidence            345666666666666664433333448888888888888888777630                                


Q ss_pred             ----CcceecccccccccCHHHHHHHHHhCCC
Q psy4084          49 ----DRQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        49 ----~~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                          +-.|.|..|++.|.+...|+.|..+|+.
T Consensus       350 ~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  350 DDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             CcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence                1238899999999999999999888753

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.36  E-value=2.9e-07  Score=31.80  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=18.2

Q ss_pred             CcchhhhccChHHHHhhHHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRTF   21 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~   21 (86)
                      |+.|++.|.....|..|++.|
T Consensus         3 C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    3 CPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             ETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHhHC
Confidence            688999999999999998864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.33  E-value=4.1e-07  Score=37.10  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=24.2

Q ss_pred             hhhCCcceecccccccccCHHHHHHHHHhCCCCcc
Q psy4084          45 HMLSDRQFACHMCIKVFPSQDKLRMHMLSGLQTFD   79 (86)
Q Consensus        45 h~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~   79 (86)
                      ++.++.|..|++|+..+....+|++|+...+..++
T Consensus        18 ~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   18 KSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34447899999999999999999999988776654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.13  E-value=2.6e-06  Score=29.39  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=17.5

Q ss_pred             CcchhhhccChHHHHhhHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFH   22 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~   22 (86)
                      |+.|+..|.+...|..|+.+++
T Consensus         3 C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    3 CPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             -SSTS-EESSHHHHHHHHHHHS
T ss_pred             CcCCCCcCCcHHHHHHHHHhhC
Confidence            7889999999999999988763

...

>smart00355 ZnF_C2H2 zinc finger

Probab=97.97  E-value=1e-05  Score=28.27  Aligned_cols=24  Identities=38%  Similarity=0.683  Sum_probs=20.2

Q ss_pred             eecccccccccCHHHHHHHHHhCC
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      +.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            468889999999999999988654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.92  E-value=2.2e-05  Score=32.88  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=27.4

Q ss_pred             ceecccccccccCHHHHHHHHHhCC-C-CccCCCCcCC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGL-Q-TFDLKSKLCT   86 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~-~-~~~~~c~~C~   86 (86)
                      .|.|++|++ ..+...|..|....+ . .+.+.|++|.
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~   38 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICS   38 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCch
Confidence            478999999 566788999988744 3 3568999984

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.85  E-value=2.3e-05  Score=32.06  Aligned_cols=26  Identities=15%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCc
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQ   26 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~   26 (86)
                      |++|+..+.+..+|++|+...++.+|
T Consensus        27 CP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   27 CPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             -TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCcchhhccchhhHHHHHHHHhcccC
Confidence            88999999999999999998888765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.81  E-value=5e-06  Score=46.14  Aligned_cols=48  Identities=29%  Similarity=0.758  Sum_probs=36.4

Q ss_pred             CCceeccc--ccccCCChHHHhhhhhC----------------------CcceecccccccccCHHHHHHHH
Q psy4084          24 DRQFACHM--CIKVFPSQDKLRMHMLS----------------------DRQFACHMCIKVFPSQDKLRMHM   71 (86)
Q Consensus        24 ~~~~~c~~--c~~~~~~~~~l~~h~~~----------------------~~~~~C~~C~~~~~~~~~l~~h~   71 (86)
                      ++||.|++  |.+.+.....|.-|+..                      .+||.|++|++.+.....|.-|+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            47888886  88888888888777642                      47888888888887777776554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.78  E-value=8.6e-06  Score=29.11  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=18.4

Q ss_pred             CcchhhhccChHHHHhhHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFH   22 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~   22 (86)
                      |..|++.|.+...|..|++.|.
T Consensus         4 C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    4 CDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             ETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCccCCccCChhHHHHHhHHhc
Confidence            6788999999999999887764

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.77  E-value=2e-05  Score=27.60  Aligned_cols=23  Identities=43%  Similarity=0.856  Sum_probs=18.6

Q ss_pred             eecccccccccCHHHHHHHHHhC
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      |.|..|+..|.+...+..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56888888888888888888753

>smart00355 ZnF_C2H2 zinc finger

Probab=97.69  E-value=4.9e-05  Score=26.40  Aligned_cols=22  Identities=27%  Similarity=0.535  Sum_probs=18.8

Q ss_pred             CcchhhhccChHHHHhhHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFH   22 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~   22 (86)
                      |+.|++.|.....|..|++.|.
T Consensus         3 C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        3 CPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCcchhCCHHHHHHHHHHhc
Confidence            7789999999999999988654

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.65  E-value=3.4e-05  Score=26.77  Aligned_cols=23  Identities=17%  Similarity=0.430  Sum_probs=17.6

Q ss_pred             eecccccccccCHHHHHHHHHhCC
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      |+|+.|+.... ...|..|++.++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            67999999887 889999998753

>PRK04860 hypothetical protein; Provisional

Probab=97.44  E-value=0.00012  Score=37.36  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=28.2

Q ss_pred             ceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      +|.|. |+.   ....+.+|.++|.++++|.|..|+
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~  150 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCG  150 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCC
Confidence            68998 987   677789999999999999999985

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.37  E-value=8.8e-05  Score=25.87  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=16.7

Q ss_pred             CcchhhhccChHHHHhhHHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRTF   21 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~   21 (86)
                      |..|+..|.+...+..|++.+
T Consensus         3 C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    3 CDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             ETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCcCCHHHHHHHHCcC
Confidence            677888888888888887754

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=97.23  E-value=0.0004  Score=24.42  Aligned_cols=20  Identities=30%  Similarity=0.688  Sum_probs=14.6

Q ss_pred             eecccccccccCHHHHHHHHH
Q psy4084          52 FACHMCIKVFPSQDKLRMHML   72 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~   72 (86)
                      .+|+.||+.| ..+.|..|++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            4688888888 5666777765

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.22  E-value=8.3e-05  Score=26.56  Aligned_cols=22  Identities=45%  Similarity=0.862  Sum_probs=15.2

Q ss_pred             eecccccccccCHHHHHHHHHh
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      |.|..|++.|.+...+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4577777777777777666654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.17  E-value=0.00024  Score=39.83  Aligned_cols=38  Identities=26%  Similarity=0.697  Sum_probs=31.9

Q ss_pred             Ccceeccc--ccccccCHHHHHHHHHhC-------------------CCCccCCCCcCC
Q psy4084          49 DRQFACHM--CIKVFPSQDKLRMHMLSG-------------------LQTFDLKSKLCT   86 (86)
Q Consensus        49 ~~~~~C~~--C~~~~~~~~~l~~h~~~~-------------------~~~~~~~c~~C~   86 (86)
                      ++||+|++  |.+.+..+..|.-|+.-.                   .+++||.|+.|+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~  405 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD  405 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccc
Confidence            59999987  999999999999998632                   256899999985

>PRK04860 hypothetical protein; Provisional

Probab=97.01  E-value=0.00035  Score=35.64  Aligned_cols=35  Identities=20%  Similarity=0.513  Sum_probs=23.3

Q ss_pred             ceecccccccCCChHHHhhhhhC---CcceecccccccccCH
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQ   64 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~   64 (86)
                      +|.|. |+.   ...++.+|.+.   +++|.|..|+..+...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            57887 776   44455566543   5778888888876543

>KOG3993|consensus

Probab=96.96  E-value=0.00022  Score=41.30  Aligned_cols=49  Identities=22%  Similarity=0.475  Sum_probs=41.9

Q ss_pred             ceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhC
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      .|.|..|...|...=.|..|.-.   ...|.|++|++.|.-..+|..|.+=|
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWH  318 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWH  318 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhccc
Confidence            48899998888888888888654   45799999999999999999999865

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.52  E-value=0.0034  Score=23.52  Aligned_cols=23  Identities=22%  Similarity=0.579  Sum_probs=18.1

Q ss_pred             ceecccccccccCHHHHHHHHHh
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      +|.|..|+..|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46788888888888888888764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=96.18  E-value=0.0041  Score=23.27  Aligned_cols=24  Identities=17%  Similarity=0.776  Sum_probs=14.2

Q ss_pred             eecccccccCCChHHHhhhhhCCcceecccccc
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIK   59 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~   59 (86)
                      |+|..||..+...         ..++.|+.||.
T Consensus         2 ~~C~~CGy~y~~~---------~~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGE---------EAPWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCC---------cCCCcCcCCCC
Confidence            5677777554332         24667777764

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.20  E-value=0.016  Score=26.81  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=17.3

Q ss_pred             CcchhhhccChHHHHhhHHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRTF   21 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~   21 (86)
                      |..|++.|.+...|..|++.+
T Consensus        53 C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   53 CPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             BSSSS-EESSHHHHHHHHHHT
T ss_pred             CCccCCCCcCHHHHHHHHcCc
Confidence            778999999999999999864

>KOG1146|consensus

Probab=94.97  E-value=0.014  Score=38.64  Aligned_cols=25  Identities=20%  Similarity=0.557  Sum_probs=21.7

Q ss_pred             CcceecccccccccCHHHHHHHHHh
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      .++|.|..|...+....+|.+|+..
T Consensus       516 ~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  516 GKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             CCcccceeeeeeeecchHHHHHHHH
Confidence            3688999999999999999999875

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=94.82  E-value=0.03  Score=28.93  Aligned_cols=11  Identities=9%  Similarity=0.126  Sum_probs=5.5

Q ss_pred             CCccCCCCcCC
Q psy4084          76 QTFDLKSKLCT   86 (86)
Q Consensus        76 ~~~~~~c~~C~   86 (86)
                      ++.|..|++|+
T Consensus       146 ge~P~~CPiCg  156 (166)
T COG1592         146 GEAPEVCPICG  156 (166)
T ss_pred             CCCCCcCCCCC
Confidence            34555555553

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=94.38  E-value=0.058  Score=20.58  Aligned_cols=33  Identities=24%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             eecccccccCCChHHHhhhhhCCcceecccccccc
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVF   61 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~   61 (86)
                      ..|+.|...|........-  .....+|+.|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~ip~--~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEKIPP--KGRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHHCCC--CCcEEECCCCCCEe
Confidence            4688888777766654321  13457888888766

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.28  E-value=0.026  Score=27.09  Aligned_cols=30  Identities=23%  Similarity=0.537  Sum_probs=18.5

Q ss_pred             eecccccccCCChHHHhhhhhCCcceecccccccccCH
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQ   64 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~~~~   64 (86)
                      ..|+.||..|.-..        ..|..|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYDLn--------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLN--------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCC--------CCCccCCCCCCccCcc
Confidence            36777776665432        3466777777776544

The function of members of this family is unknown.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=93.97  E-value=0.078  Score=22.60  Aligned_cols=10  Identities=20%  Similarity=0.690  Sum_probs=5.0

Q ss_pred             Ccceeccccc
Q psy4084          49 DRQFACHMCI   58 (86)
Q Consensus        49 ~~~~~C~~C~   58 (86)
                      ..+|.|+.||
T Consensus        48 g~~Y~Cp~CG   57 (61)
T COG2888          48 GNPYRCPKCG   57 (61)
T ss_pred             CCceECCCcC
Confidence            3455555554

>KOG2893|consensus

Probab=93.85  E-value=0.01  Score=32.37  Aligned_cols=41  Identities=32%  Similarity=0.661  Sum_probs=31.7

Q ss_pred             cccccccCCChHHHhhhhhCCcceecccccccccCHHHHHHH
Q psy4084          29 CHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMH   70 (86)
Q Consensus        29 c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~~~~~~l~~h   70 (86)
                      |..|++.|..-..|..|++ .+.|+|-+|-+...+...|..|
T Consensus        13 cwycnrefddekiliqhqk-akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQK-AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhh-hccceeeeehhhhccCCCceee
Confidence            6778888888888888877 4678888887776666666665

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=93.75  E-value=0.084  Score=20.23  Aligned_cols=34  Identities=26%  Similarity=0.511  Sum_probs=21.2

Q ss_pred             eecccccccCCChHHHhhhhhCCcceeccccccccc
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFP   62 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~~   62 (86)
                      ..|+.|+..|.....-..  .......|+.|+..|.
T Consensus         3 i~CP~C~~~f~v~~~~l~--~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDKLP--AGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHHcc--cCCcEEECCCCCcEee
Confidence            467888877776654221  1144678888887663

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=93.69  E-value=0.049  Score=20.82  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=19.6

Q ss_pred             eecccccccCCChHHHhhhhhCCcceeccccccccc
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFP   62 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~~   62 (86)
                      +.|+.|+..|..........  ...+.|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~~~~--~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLGAN--GGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHcCCC--CCEEECCCCCCEEE
Confidence            56777877766554432211  22467888877653

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.65  E-value=0.033  Score=23.39  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=12.9

Q ss_pred             ceecccccccccCHHHHHHHHHh
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      -+.|+.|+..|.......+|...
T Consensus        17 ~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          17 FLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             eeeCCchhHHHHHhHHHHHHhhH
Confidence            34566666666655555555543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.60  E-value=0.025  Score=30.42  Aligned_cols=40  Identities=15%  Similarity=0.317  Sum_probs=25.6

Q ss_pred             CceecccccccCCChHHHhhhhhC-------------C-----cceecccccccccCH
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHMLS-------------D-----RQFACHMCIKVFPSQ   64 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~~~-------------~-----~~~~C~~C~~~~~~~   64 (86)
                      +...|+.|++.|..........+.             .     ..+.|+.||.++...
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            456788888888766544433321             1     235799999987643

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=93.55  E-value=0.045  Score=19.35  Aligned_cols=10  Identities=30%  Similarity=0.510  Sum_probs=7.0

Q ss_pred             eccccccccc
Q psy4084          53 ACHMCIKVFP   62 (86)
Q Consensus        53 ~C~~C~~~~~   62 (86)
                      .|+.||..|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            5777777764

Several members are annotated as putative helicases.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=93.23  E-value=0.1  Score=22.23  Aligned_cols=9  Identities=22%  Similarity=0.807  Sum_probs=4.2

Q ss_pred             cceeccccc
Q psy4084          50 RQFACHMCI   58 (86)
Q Consensus        50 ~~~~C~~C~   58 (86)
                      .+|.|+.||
T Consensus        47 ~~Y~CP~CG   55 (59)
T PRK14890         47 NPYTCPKCG   55 (59)
T ss_pred             CceECCCCC
Confidence            344444444

>smart00531 TFIIE Transcription initiation factor IIE

Probab=93.20  E-value=0.18  Score=25.54  Aligned_cols=38  Identities=16%  Similarity=0.414  Sum_probs=23.5

Q ss_pred             CCCceecccccccCCChHHHhhhhhCCcceecccccccc
Q psy4084          23 SDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVF   61 (86)
Q Consensus        23 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~   61 (86)
                      ....|.|+.|+..|.....+..- .....|.|+.||...
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~~-d~~~~f~Cp~Cg~~l  133 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQLL-DMDGTFTCPRCGEEL  133 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHhc-CCCCcEECCCCCCEE
Confidence            34568888888877765543321 112338888888765

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=92.88  E-value=0.14  Score=18.06  Aligned_cols=20  Identities=15%  Similarity=0.567  Sum_probs=14.4

Q ss_pred             eecccccccccCHHHHHHHHH
Q psy4084          52 FACHMCIKVFPSQDKLRMHML   72 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~   72 (86)
                      ..|+.|++.+ ....++.|+.
T Consensus         2 v~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        2 VQCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             CcCCCCcCcc-cHHHHHHHHH
Confidence            3588888887 5567777765

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=92.48  E-value=0.11  Score=26.65  Aligned_cols=16  Identities=19%  Similarity=0.393  Sum_probs=8.2

Q ss_pred             eecccccccccCHHHH
Q psy4084          52 FACHMCIKVFPSQDKL   67 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l   67 (86)
                      |.|+.|+..|.....+
T Consensus       110 Y~Cp~c~~r~tf~eA~  125 (158)
T TIGR00373       110 FICPNMCVRFTFNEAM  125 (158)
T ss_pred             EECCCCCcEeeHHHHH
Confidence            4555555555544444

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.45  E-value=0.12  Score=19.42  Aligned_cols=25  Identities=16%  Similarity=0.545  Sum_probs=15.0

Q ss_pred             ceecccccccCCChHHHhhhhhCCcceecccccc
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIK   59 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~   59 (86)
                      .|.|..||..+...         +.|..|+.||.
T Consensus         2 ~~~C~~CG~i~~g~---------~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE---------EAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC---------cCCCcCcCCCC
Confidence            36777777554321         24567887775

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>smart00614 ZnF_BED BED zinc finger

Probab=92.43  E-value=0.19  Score=20.50  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=16.8

Q ss_pred             eecccccccccCH-----HHHHHHHH-hC
Q psy4084          52 FACHMCIKVFPSQ-----DKLRMHML-SG   74 (86)
Q Consensus        52 ~~C~~C~~~~~~~-----~~l~~h~~-~~   74 (86)
                      ..|..|++.+...     ++|.+|+. .|
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h   47 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKH   47 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence            5688888877554     68888888 44

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PHA00626 hypothetical protein

Probab=92.32  E-value=0.064  Score=22.57  Aligned_cols=14  Identities=14%  Similarity=0.280  Sum_probs=8.8

Q ss_pred             cceecccccccccC
Q psy4084          50 RQFACHMCIKVFPS   63 (86)
Q Consensus        50 ~~~~C~~C~~~~~~   63 (86)
                      ..|.|+.||+.|..
T Consensus        22 nrYkCkdCGY~ft~   35 (59)
T PHA00626         22 DDYVCCDCGYNDSK   35 (59)
T ss_pred             cceEcCCCCCeech
Confidence            45677777766543

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=92.08  E-value=0.2  Score=23.97  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=23.8

Q ss_pred             cceec----ccccccccCHHHHHHHHHhCCC
Q psy4084          50 RQFAC----HMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        50 ~~~~C----~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      .-|.|    ..|++...+...+..|++.+++
T Consensus        79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            45899    9999999999999999998764

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG4167|consensus

Probab=92.06  E-value=0.028  Score=35.29  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=23.0

Q ss_pred             ceecccccccccCHHHHHHHHHhCC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      -|.|..|++.|.-...++.||++|.
T Consensus       792 iFpCreC~kvF~KiKSrNAHMK~Hr  816 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIKSRNAHMKTHR  816 (907)
T ss_pred             eeehHHHHHHHHHHhhhhHHHHHHH
Confidence            4899999999999999999999985

>KOG2785|consensus

Probab=92.03  E-value=0.39  Score=28.20  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=39.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC--Ccceeccccc---ccccCHHHHHHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS--DRQFACHMCI---KVFPSQDKLRMHMLS   73 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~C~~C~---~~~~~~~~l~~h~~~   73 (86)
                      |-.|++.+.+-.....||..++|--.  ...  ........|...+.-  ..-+.|..|+   +.|.+....+.||..
T Consensus       169 CLfC~~~~k~~e~~~~HM~~~HgffI--Pdr--eYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  169 CLFCDKKSKSLEENLKHMFKEHGFFI--PDR--EYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             eeecCCCcccHHHHHHHHhhccCCcC--Cch--HhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            44566666666666666666555211  000  112222233333221  4567888887   889999999999874

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=91.87  E-value=0.14  Score=26.87  Aligned_cols=17  Identities=24%  Similarity=0.507  Sum_probs=9.2

Q ss_pred             ceecccccccccCHHHH
Q psy4084          51 QFACHMCIKVFPSQDKL   67 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l   67 (86)
                      -|.|+.|+..|.....+
T Consensus       117 ~Y~Cp~C~~rytf~eA~  133 (178)
T PRK06266        117 FFFCPNCHIRFTFDEAM  133 (178)
T ss_pred             EEECCCCCcEEeHHHHh
Confidence            35566666555555443

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.66  E-value=0.33  Score=19.13  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=14.3

Q ss_pred             cceecccccccccC----HHHHHHHHHh
Q psy4084          50 RQFACHMCIKVFPS----QDKLRMHMLS   73 (86)
Q Consensus        50 ~~~~C~~C~~~~~~----~~~l~~h~~~   73 (86)
                      ....|..|++.+..    .++|..|++.
T Consensus        15 ~~a~C~~C~~~~~~~~~~ts~l~~HL~~   42 (45)
T PF02892_consen   15 KKAKCKYCGKVIKYSSGGTSNLKRHLKK   42 (45)
T ss_dssp             S-EEETTTTEE-----SSTHHHHHHHHH
T ss_pred             CeEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence            44678888777665    3778888743

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=91.43  E-value=0.13  Score=20.60  Aligned_cols=29  Identities=14%  Similarity=0.400  Sum_probs=17.7

Q ss_pred             ceecccccccCCChHHHhhhhhCCcceecccccccc
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVF   61 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~   61 (86)
                      .|.|+.||..+.....       ...+.|+.||..+
T Consensus         3 ~y~C~~CG~~~~~~~~-------~~~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVELDEY-------GTGVRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEECCC-------CCceECCCCCCeE
Confidence            4778888766544321       1256788887654

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=90.40  E-value=0.072  Score=20.58  Aligned_cols=29  Identities=24%  Similarity=0.500  Sum_probs=16.4

Q ss_pred             eecccccccCCChHHHhhhhhCCcceecccccc
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIK   59 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~   59 (86)
                      |.|..|+..|........    .....|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~~~----~~~~~CP~Cg~   34 (41)
T smart00834        6 YRCEDCGHTFEVLQKISD----DPLATCPECGG   34 (41)
T ss_pred             EEcCCCCCEEEEEEecCC----CCCCCCCCCCC
Confidence            677777776654332211    23446777775

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>KOG2893|consensus

Probab=90.39  E-value=0.17  Score=27.89  Aligned_cols=33  Identities=24%  Similarity=0.599  Sum_probs=25.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      .++| |=+|++.|.....|.+|.+.    +.|+|.+|.
T Consensus         9 ~kpw-cwycnrefddekiliqhqka----khfkchich   41 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQKA----KHFKCHICH   41 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhhh----ccceeeeeh
Confidence            4565 67899999999999888764    448998883

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=90.24  E-value=0.19  Score=24.90  Aligned_cols=30  Identities=17%  Similarity=0.166  Sum_probs=19.0

Q ss_pred             eecccccccCCChHHHhhhhhCCcceecccccccccCH
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQ   64 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~~~~   64 (86)
                      ..|+.|+..|.-..        ..|..|+.||..|.-.
T Consensus        10 r~Cp~cg~kFYDLn--------k~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDLN--------RRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCccccccC--------CCCccCCCcCCccCcc
Confidence            36777777665432        3567777787776544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=90.11  E-value=0.12  Score=23.06  Aligned_cols=14  Identities=29%  Similarity=0.705  Sum_probs=7.1

Q ss_pred             Ccceecc--ccccccc
Q psy4084          49 DRQFACH--MCIKVFP   62 (86)
Q Consensus        49 ~~~~~C~--~C~~~~~   62 (86)
                      ++.++|.  .||..|.
T Consensus        25 ~~Y~qC~N~eCg~tF~   40 (72)
T PRK09678         25 ERYHQCQNVNCSATFI   40 (72)
T ss_pred             eeeeecCCCCCCCEEE
Confidence            3445555  5555554

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.04  E-value=0.093  Score=30.31  Aligned_cols=55  Identities=24%  Similarity=0.491  Sum_probs=30.0

Q ss_pred             ceecccccccCCChHHHhhhhh--C---C--cceecc--cccccccCHHHHHHHHHhCCCCccC
Q psy4084          26 QFACHMCIKVFPSQDKLRMHML--S---D--RQFACH--MCIKVFPSQDKLRMHMLSGLQTFDL   80 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~--~---~--~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~   80 (86)
                      ++.+..|...+.....+..|..  .   +  +++.|+  .|++.|.+...+..|...|....+.
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPA  352 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcc
Confidence            3445555555555555555544  2   3  556666  4666666666666666655554443

>KOG2231|consensus

Probab=89.85  E-value=0.81  Score=29.02  Aligned_cols=64  Identities=22%  Similarity=0.526  Sum_probs=33.9

Q ss_pred             cChHHHHhhHHHHhCCCceeccccc---------ccCCChHHHhhhhhC-------Cc-ceecccccccccCHHHHHHHH
Q psy4084           9 TEYQVIRKHIRTFHSDRQFACHMCI---------KVFPSQDKLRMHMLS-------DR-QFACHMCIKVFPSQDKLRMHM   71 (86)
Q Consensus         9 ~~~~~l~~h~~~~~~~~~~~c~~c~---------~~~~~~~~l~~h~~~-------~~-~~~C~~C~~~~~~~~~l~~h~   71 (86)
                      .....|+.|++..++.  +-|..|.         ........|..|+..       .+ ...|..|...|.....|..|+
T Consensus       125 ~s~~~Lk~H~~~~H~~--~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~  202 (669)
T KOG2231|consen  125 KSVENLKNHMRDQHKL--HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHL  202 (669)
T ss_pred             hHHHHHHHHHHHhhhh--hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhh
Confidence            3667788888643331  1222211         122344555556543       11 135677777777777777777


Q ss_pred             HhC
Q psy4084          72 LSG   74 (86)
Q Consensus        72 ~~~   74 (86)
                      +.+
T Consensus       203 ~~~  205 (669)
T KOG2231|consen  203 RFD  205 (669)
T ss_pred             ccc
Confidence            654

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=89.79  E-value=0.72  Score=18.46  Aligned_cols=39  Identities=21%  Similarity=0.549  Sum_probs=19.8

Q ss_pred             HhhHHHHhCCCceecccccccCCChHHHhhhhhCCcceecccccc
Q psy4084          15 RKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIK   59 (86)
Q Consensus        15 ~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~   59 (86)
                      ..++....-...+.|+.|+..  ....+.    ....|.|..|++
T Consensus         7 ~~~l~~~RW~~g~~CP~Cg~~--~~~~~~----~~~~~~C~~C~~   45 (46)
T PF12760_consen    7 REYLEEIRWPDGFVCPHCGST--KHYRLK----TRGRYRCKACRK   45 (46)
T ss_pred             HHHHHHhcCCCCCCCCCCCCe--eeEEeC----CCCeEECCCCCC
Confidence            344443333334678888754  111111    135677877765

It may be a zinc-binding beta ribbon domain that could bind DNA.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=89.68  E-value=0.075  Score=20.97  Aligned_cols=29  Identities=21%  Similarity=0.526  Sum_probs=17.4

Q ss_pred             eecccccccCCChHHHhhhhhCCcceecccccc
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIK   59 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~   59 (86)
                      |.|..||..|.....+..    ..+..|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~~~----~~~~~CP~Cg~   34 (42)
T PF09723_consen    6 YRCEECGHEFEVLQSISE----DDPVPCPECGS   34 (42)
T ss_pred             EEeCCCCCEEEEEEEcCC----CCCCcCCCCCC
Confidence            677778776655443222    24456777776

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=89.52  E-value=0.3  Score=19.56  Aligned_cols=26  Identities=19%  Similarity=0.382  Sum_probs=17.0

Q ss_pred             eecccccccCCChHHHhhhhhCCcceeccccccc
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKV   60 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~   60 (86)
                      |.|..||..+...        ..-+..|+.||..
T Consensus         3 Y~C~~Cg~~~~~~--------~~~~irC~~CG~r   28 (44)
T smart00659        3 YICGECGRENEIK--------SKDVVRCRECGYR   28 (44)
T ss_pred             EECCCCCCEeecC--------CCCceECCCCCce
Confidence            6778887766543        1345788888754

present in RNA polymerase I, II and III

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=89.50  E-value=0.33  Score=24.28  Aligned_cols=28  Identities=18%  Similarity=0.246  Sum_probs=17.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCcc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFD   79 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~   79 (86)
                      .....|-+||+.|...   .+|+..|++-.+
T Consensus        70 ~d~i~clecGk~~k~L---krHL~~~~gltp   97 (132)
T PF05443_consen   70 PDYIICLECGKKFKTL---KRHLRTHHGLTP   97 (132)
T ss_dssp             SS-EE-TBT--EESBH---HHHHHHTT-S-H
T ss_pred             cCeeEEccCCcccchH---HHHHHHccCCCH
Confidence            3457899999998765   889999876443

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=89.39  E-value=0.1  Score=21.41  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=16.4

Q ss_pred             eecccccccCCChHHHhhhhhCCcceecccccc
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIK   59 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~   59 (86)
                      |.|..|+..|.....+..    ..+..|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~~~----~~~~~CP~Cg~   34 (52)
T TIGR02605         6 YRCTACGHRFEVLQKMSD----DPLATCPECGG   34 (52)
T ss_pred             EEeCCCCCEeEEEEecCC----CCCCCCCCCCC
Confidence            667777776654432211    23446777775

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>TIGR00622 ssl1 transcription factor ssl1

Probab=89.36  E-value=0.61  Score=22.68  Aligned_cols=46  Identities=20%  Similarity=0.438  Sum_probs=26.4

Q ss_pred             cccccccCCChHHHhhh-hhCCcceecccccccccCHHHHHHHHHhC
Q psy4084          29 CHMCIKVFPSQDKLRMH-MLSDRQFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        29 c~~c~~~~~~~~~l~~h-~~~~~~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      |-.|...|........- +.....|.|+.|...|-..-.+-.|...|
T Consensus        58 C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        58 CFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhcc
Confidence            66666666543211100 11134578888888887776666676665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=88.40  E-value=0.088  Score=30.40  Aligned_cols=48  Identities=27%  Similarity=0.668  Sum_probs=40.4

Q ss_pred             CcchhhhccChHHHHhhHH--HHhCC--Cceecc--cccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIR--TFHSD--RQFACH--MCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~--~~~~~--~~~~c~--~c~~~~~~~~~l~~h~~~   48 (86)
                      |..|...|.....+..|.+  .|.++  +++.|+  .|++.|.....+..|...
T Consensus       292 ~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  345 (467)
T COG5048         292 SKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILL  345 (467)
T ss_pred             CccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccc
Confidence            3567788888999999999  79999  899999  799999988888777653

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=87.71  E-value=0.45  Score=19.58  Aligned_cols=29  Identities=17%  Similarity=0.465  Sum_probs=17.2

Q ss_pred             CceecccccccCCChHHHhhhhhCCcceeccccccc
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKV   60 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~   60 (86)
                      ..|.|..|++.+....       ......|+.||..
T Consensus         5 ~~Y~C~~Cg~~~~~~~-------~~~~irCp~Cg~r   33 (49)
T COG1996           5 MEYKCARCGREVELDQ-------ETRGIRCPYCGSR   33 (49)
T ss_pred             EEEEhhhcCCeeehhh-------ccCceeCCCCCcE
Confidence            3477888887762211       1345678888754

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=86.89  E-value=0.22  Score=25.53  Aligned_cols=12  Identities=33%  Similarity=0.625  Sum_probs=5.5

Q ss_pred             eecccccccCCC
Q psy4084          27 FACHMCIKVFPS   38 (86)
Q Consensus        27 ~~c~~c~~~~~~   38 (86)
                      ++|+.||..|..
T Consensus        29 ~~c~~c~~~f~~   40 (154)
T PRK00464         29 RECLACGKRFTT   40 (154)
T ss_pred             eeccccCCcceE
Confidence            444444444443

>KOG2186|consensus

Probab=86.83  E-value=0.52  Score=26.22  Aligned_cols=13  Identities=38%  Similarity=0.748  Sum_probs=6.5

Q ss_pred             ceecccccccCCC
Q psy4084          26 QFACHMCIKVFPS   38 (86)
Q Consensus        26 ~~~c~~c~~~~~~   38 (86)
                      -|.|..|+..|..
T Consensus        29 ~fSCIDC~k~F~~   41 (276)
T KOG2186|consen   29 YFSCIDCGKTFER   41 (276)
T ss_pred             eeEEeeccccccc
Confidence            3455555555544

>KOG2785|consensus

Probab=86.44  E-value=1.3  Score=26.13  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=43.0

Q ss_pred             CcchhhhccChHHHHhhHHHHhCC-----Cce-ecccccccCCChHHHhhhhh------CCcceecccccccccCHHHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSD-----RQF-ACHMCIKVFPSQDKLRMHML------SDRQFACHMCIKVFPSQDKLR   68 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~-----~~~-~c~~c~~~~~~~~~l~~h~~------~~~~~~C~~C~~~~~~~~~l~   68 (86)
                      |..|...|.....-+.|+.+-+-.     +.. ..++....|........-..      ..-++.|..|.+.|.....-.
T Consensus         6 C~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a~~   85 (390)
T KOG2785|consen    6 CNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKAHE   85 (390)
T ss_pred             eeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhhHH
Confidence            677888888887777787764321     111 11233333332211111111      145688999999999998888


Q ss_pred             HHHHh
Q psy4084          69 MHMLS   73 (86)
Q Consensus        69 ~h~~~   73 (86)
                      .|+..
T Consensus        86 ~hl~S   90 (390)
T KOG2785|consen   86 NHLKS   90 (390)
T ss_pred             HHHHH
Confidence            88864

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=86.02  E-value=0.48  Score=16.43  Aligned_cols=9  Identities=33%  Similarity=0.752  Sum_probs=5.5

Q ss_pred             cceeccccc
Q psy4084          50 RQFACHMCI   58 (86)
Q Consensus        50 ~~~~C~~C~   58 (86)
                      .+|.|+.||
T Consensus        15 v~f~CPnCG   23 (24)
T PF07754_consen   15 VPFPCPNCG   23 (24)
T ss_pred             ceEeCCCCC
Confidence            456666665

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=85.81  E-value=0.72  Score=25.08  Aligned_cols=27  Identities=22%  Similarity=0.637  Sum_probs=20.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      +..|.|+.|++.|....-+..|+.+.|
T Consensus        75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH  101 (214)
T PF04959_consen   75 EDKWRCPLCGKLFKGPEFVRKHIFNKH  101 (214)
T ss_dssp             SEEEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred             CCEECCCCCCcccCChHHHHHHHhhcC
Confidence            346899999999999999999998644

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>KOG2231|consensus

Probab=85.72  E-value=1.9  Score=27.52  Aligned_cols=46  Identities=30%  Similarity=0.635  Sum_probs=22.8

Q ss_pred             ecccccccCCChHHHhhhhhCCcceecccc------cccccCHHHHHHHHHhC
Q psy4084          28 ACHMCIKVFPSQDKLRMHMLSDRQFACHMC------IKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        28 ~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C------~~~~~~~~~l~~h~~~~   74 (86)
                      .|..|...|-....+.+|+..+ -+.|..|      +.-|.....|..|.+.+
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~-h~~chfC~~~~~~neyy~~~~dLe~HfR~~  235 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFD-HEFCHFCDYKTGQNEYYNDYDDLEEHFRKG  235 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccc-eeheeecCcccccchhcccchHHHHHhhhc
Confidence            4555666666666666665531 2233333      22344555555555543

>KOG4173|consensus

Probab=84.45  E-value=0.5  Score=25.53  Aligned_cols=67  Identities=27%  Similarity=0.641  Sum_probs=47.7

Q ss_pred             hhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC----------Cc---ceecc--cccccccCHHHHH
Q psy4084           4 CMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS----------DR---QFACH--MCIKVFPSQDKLR   68 (86)
Q Consensus         4 C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~----------~~---~~~C~--~C~~~~~~~~~l~   68 (86)
                      |-+.|.....+..|..+.++   -.|..|.+.|.+.--|..|+..          ++   -|+|.  .|+..|.+.....
T Consensus        87 c~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~Rk  163 (253)
T KOG4173|consen   87 CCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRK  163 (253)
T ss_pred             hHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhh
Confidence            45666666667777655444   3788999999988888888752          22   26674  4888898888888


Q ss_pred             HHHHh
Q psy4084          69 MHMLS   73 (86)
Q Consensus        69 ~h~~~   73 (86)
                      .|+-.
T Consensus       164 dH~I~  168 (253)
T KOG4173|consen  164 DHMIR  168 (253)
T ss_pred             hHHHH
Confidence            88754

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=84.17  E-value=0.68  Score=17.21  Aligned_cols=9  Identities=22%  Similarity=0.601  Sum_probs=4.8

Q ss_pred             ceecccccc
Q psy4084          51 QFACHMCIK   59 (86)
Q Consensus        51 ~~~C~~C~~   59 (86)
                      +..|+.||.
T Consensus        17 ~irC~~CG~   25 (32)
T PF03604_consen   17 PIRCPECGH   25 (32)
T ss_dssp             TSSBSSSS-
T ss_pred             cEECCcCCC
Confidence            456666664

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>KOG1146|consensus

Probab=84.09  E-value=0.54  Score=31.98  Aligned_cols=49  Identities=22%  Similarity=0.519  Sum_probs=34.6

Q ss_pred             CCceecccccccCCChHHHhhhhhC--------------------CcceecccccccccCHHHHHHHHHh
Q psy4084          24 DRQFACHMCIKVFPSQDKLRMHMLS--------------------DRQFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        24 ~~~~~c~~c~~~~~~~~~l~~h~~~--------------------~~~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      +.+|.|..|...|.....+..|...                    -.++ |..|...|.....|..||+.
T Consensus      1282 ~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1282 THRYLCRQCKMAFDGEAPLTAHQRKFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLSGREALQIHMRS 1350 (1406)
T ss_pred             chhHHHHHHHhhhcchhHHHHHHHHHHhccCccccCCCCcccCcccccc-chHHHhhcchhHHHHHHHHH
Confidence            3456666666666666666555421                    2345 99999999999999999986

>KOG2593|consensus

Probab=83.50  E-value=0.72  Score=27.61  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=22.5

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ..|.|+.|.+.|.....++   ......-.|.|..|+
T Consensus       127 ~~Y~Cp~C~kkyt~Lea~~---L~~~~~~~F~C~~C~  160 (436)
T KOG2593|consen  127 AGYVCPNCQKKYTSLEALQ---LLDNETGEFHCENCG  160 (436)
T ss_pred             ccccCCccccchhhhHHHH---hhcccCceEEEecCC
Confidence            5688888888887776654   223334457777775

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=83.03  E-value=0.85  Score=21.13  Aligned_cols=33  Identities=15%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             CceecccccccCCChHHHhhhhhCCcceecccccccccCH
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQ   64 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~~~~   64 (86)
                      ..+.|+.|++.--..      . ..--|.|..||..|+-.
T Consensus        34 ~~~~Cp~C~~~~VkR------~-a~GIW~C~kCg~~fAGg   66 (89)
T COG1997          34 AKHVCPFCGRTTVKR------I-ATGIWKCRKCGAKFAGG   66 (89)
T ss_pred             cCCcCCCCCCcceee------e-ccCeEEcCCCCCeeccc
Confidence            468899998651110      0 13468899999888643

>KOG2593|consensus

Probab=82.53  E-value=2.3  Score=25.66  Aligned_cols=40  Identities=20%  Similarity=0.380  Sum_probs=26.9

Q ss_pred             HhCCCceecccccccCCChHHHhhhhhCCcceeccccccc
Q psy4084          21 FHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKV   60 (86)
Q Consensus        21 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~   60 (86)
                      .+...-|.|+.|.+.|.....+..=....-.|.|..|+-.
T Consensus       123 ~t~~~~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~ge  162 (436)
T KOG2593|consen  123 DTNVAGYVCPNCQKKYTSLEALQLLDNETGEFHCENCGGE  162 (436)
T ss_pred             ccccccccCCccccchhhhHHHHhhcccCceEEEecCCCc
Confidence            3345679999999999887765432111346889888654

>PF15269 zf-C2H2_7: Zinc-finger

Probab=81.97  E-value=1.7  Score=17.50  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=17.6

Q ss_pred             eecccccccccCHHHHHHHHHh
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      |+|-+|..+....+.|-.||+-
T Consensus        21 ykcfqcpftc~~kshl~nhmky   42 (54)
T PF15269_consen   21 YKCFQCPFTCNEKSHLFNHMKY   42 (54)
T ss_pred             ceeecCCcccchHHHHHHHHHH
Confidence            5788888888888888888864

>PRK04023 DNA polymerase II large subunit; Validated

Probab=81.85  E-value=2.1  Score=28.80  Aligned_cols=7  Identities=43%  Similarity=0.895  Sum_probs=3.2

Q ss_pred             ecccccc
Q psy4084          28 ACHMCIK   34 (86)
Q Consensus        28 ~c~~c~~   34 (86)
                      .|+.||.
T Consensus       628 fCpsCG~  634 (1121)
T PRK04023        628 KCPSCGK  634 (1121)
T ss_pred             cCCCCCC
Confidence            4444443

>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr

Probab=81.62  E-value=0.44  Score=19.22  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=16.2

Q ss_pred             cccccccCCChHHHhhhhhC-Ccceeccc--cccccc
Q psy4084          29 CHMCIKVFPSQDKLRMHMLS-DRQFACHM--CIKVFP   62 (86)
Q Consensus        29 c~~c~~~~~~~~~l~~h~~~-~~~~~C~~--C~~~~~   62 (86)
                      |+.||.......+...+... +..++|..  ||..|.
T Consensus         2 CP~Cg~~a~ir~S~~~s~~~~~~Y~qC~N~~Cg~tfv   38 (47)
T PF04606_consen    2 CPHCGSKARIRTSRQLSPLTRELYCQCTNPECGHTFV   38 (47)
T ss_pred             cCCCCCeeEEEEchhhCcceEEEEEEECCCcCCCEEE
Confidence            56666544333332222222 44566654  776664

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=81.06  E-value=1.3  Score=28.51  Aligned_cols=30  Identities=27%  Similarity=0.588  Sum_probs=12.6

Q ss_pred             ecccccccCCC---hHHHhhhhhCCcceeccccc
Q psy4084          28 ACHMCIKVFPS---QDKLRMHMLSDRQFACHMCI   58 (86)
Q Consensus        28 ~c~~c~~~~~~---~~~l~~h~~~~~~~~C~~C~   58 (86)
                      .|..||..+.-   ...|.-|+.. ....|.+||
T Consensus       437 ~C~~Cg~v~~Cp~Cd~~lt~H~~~-~~L~CH~Cg  469 (730)
T COG1198         437 LCRDCGYIAECPNCDSPLTLHKAT-GQLRCHYCG  469 (730)
T ss_pred             ecccCCCcccCCCCCcceEEecCC-CeeEeCCCC
Confidence            35555544322   1334444432 334455554

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=80.88  E-value=4.8  Score=23.82  Aligned_cols=71  Identities=27%  Similarity=0.496  Sum_probs=38.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceeccc----ccccCCChHHHhhhhhCCcceeccc--c----cccccCHHHHHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHM----CIKVFPSQDKLRMHMLSDRQFACHM--C----IKVFPSQDKLRMH   70 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~----c~~~~~~~~~l~~h~~~~~~~~C~~--C----~~~~~~~~~l~~h   70 (86)
                      |..|...|.....|..|+|..+.. -+.|..    ..+.|..-..|..|... ..|.|..  |    -..|.....|..|
T Consensus       223 C~FC~~~FYdDDEL~~HcR~~HE~-ChICD~v~p~~~QYFK~Y~~Le~HF~~-~hy~ct~qtc~~~k~~vf~~~~el~~h  300 (493)
T COG5236         223 CIFCKIYFYDDDELRRHCRLRHEA-CHICDMVGPIRYQYFKSYEDLEAHFRN-AHYCCTFQTCRVGKCYVFPYHTELLEH  300 (493)
T ss_pred             hhhccceecChHHHHHHHHhhhhh-hhhhhccCccchhhhhCHHHHHHHhhc-CceEEEEEEEecCcEEEeccHHHHHHH
Confidence            556777777777788887764432 122222    12345555666666553 2233321  2    1346777777777


Q ss_pred             HHh
Q psy4084          71 MLS   73 (86)
Q Consensus        71 ~~~   73 (86)
                      +..
T Consensus       301 ~~~  303 (493)
T COG5236         301 LTR  303 (493)
T ss_pred             HHH
Confidence            654

>KOG2482|consensus

Probab=80.29  E-value=1.4  Score=25.86  Aligned_cols=23  Identities=30%  Similarity=0.735  Sum_probs=21.3

Q ss_pred             ceecccccccccCHHHHHHHHHh
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      .+.|..|.+.|.....|..||+.
T Consensus       195 r~~CLyCekifrdkntLkeHMrk  217 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRK  217 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHh
Confidence            47899999999999999999986

>KOG3408|consensus

Probab=80.18  E-value=1.3  Score=21.90  Aligned_cols=23  Identities=30%  Similarity=0.652  Sum_probs=12.0

Q ss_pred             ceecccccccCCChHHHhhhhhC
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      .|.|..|.+.|.....+..|.++
T Consensus        57 qfyCi~CaRyFi~~~~l~~H~kt   79 (129)
T KOG3408|consen   57 QFYCIECARYFIDAKALKTHFKT   79 (129)
T ss_pred             eeehhhhhhhhcchHHHHHHHhc
Confidence            35555555555555555555443

>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays

Probab=80.06  E-value=3.1  Score=19.92  Aligned_cols=29  Identities=21%  Similarity=0.346  Sum_probs=12.2

Q ss_pred             hhhccChHHHHhhHHHHhCCCceecccccc
Q psy4084           5 MGKFTEYQVIRKHIRTFHSDRQFACHMCIK   34 (86)
Q Consensus         5 ~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~   34 (86)
                      |..|.+...+...+.. -..+.|.|...|+
T Consensus        10 ~EiF~dYe~Y~~R~~~-y~~~vwtC~~TGk   38 (102)
T PF10537_consen   10 GEIFRDYEEYLKRMIL-YNQRVWTCEITGK   38 (102)
T ss_pred             CcccCCHHHHHHHHHH-HhCCeeEEecCCC
Confidence            3444444443333222 2234455555554

This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	86
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		7e-05
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		3e-04
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		4e-04
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		6e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		7e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		8e-04
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		8e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		8e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 3   ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMCIK 59
           EC   F++   +R H RT   ++ + C  C K F  +D L  H      ++ + C  C K
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Query: 60  VFPSQDKLRMHM 71
            F  +D L +H 
Sbjct: 170 SFSRRDALNVHQ 181

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1  MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMC 57
          +  C  +F++   + +HIR     + F C +C++ F   D L  H+     ++ FAC +C
Sbjct: 9  VESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 58 IKVFPSQDKLRMHMLSGLQTFD 79
           + F   D+ + H    L+  D
Sbjct: 69 GRKFARSDERKRHTKIHLRQKD 90

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1  MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMC 57
          +  C  +F++   + +HIR     + F C +C++ F   D L  H+     ++ FAC +C
Sbjct: 9  VESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 58 IKVFPSQDKLRMHMLSGLQTFD 79
           + F   D+ + H    L+  D
Sbjct: 69 GRKFARSDERKRHTKIHLRQKD 90

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 1  MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMC 57
          +  C  +F+    + +HIR     + F C +C++ F   D L  H+     ++ FAC +C
Sbjct: 9  VESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 58 IKVFPSQDKLRMHMLSGLQTFD 79
           + F   D+ + H    L+  D
Sbjct: 69 GRKFARSDERKRHTKIHLRQKD 90

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 1  MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMC 57
          +  C  +F+    + +HIR     + F C +C++ F   D L  H+     ++ FAC +C
Sbjct: 9  VESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 58 IKVFPSQDKLRMHMLSGLQTFD 79
           + F   D+ + H    L+  D
Sbjct: 69 GRKFARSDERKRHTKIHLRQKD 90

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 1  MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMC 57
          +  C  +F+    + +HIR     + F C +C++ F   D L  H+     ++ FAC +C
Sbjct: 8  VESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 67
Query: 58 IKVFPSQDKLRMHM 71
           + F   D+ + H 
Sbjct: 68 GRKFARSDERKRHT 81

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 1  MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMC 57
          +  C  +F+    + +HIR     + F C +C++ F   D L  H+     ++ FAC +C
Sbjct: 9  VESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 58 IKVFPSQDKLRMHM 71
           + F   D+ + H 
Sbjct: 69 GRKFARSDERKRHT 82

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 1  MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHM---LSDRQFACHMC 57
          +  C  +F+    + +HIR     + F C +C++ F   D L  H+     ++ FAC +C
Sbjct: 9  VESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 58 IKVFPSQDKLRMHMLSGLQTFD 79
           + F   D+ + H    L+  D
Sbjct: 69 GRKFARSDERKRHTKIHLRQKD 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	86
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	2e-04

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 36.5 bits (83), Expect = 2e-04
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 1   MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS-DRQFACHMCIK 59
                 +  +       +    +  QF C +C+  F S   L+ H+   +    C +C K
Sbjct: 49  TLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKK 108

Query: 60  VFPSQDKLRMHM 71
            F S D    H+
Sbjct: 109 EFTSTDSALDHV 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	86
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.94
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.93
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.92
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.9
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.9
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.9
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.87
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.87
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.87
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.87
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.85
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.85
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.85
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.84
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.84
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.84
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.83
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.83
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.83
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.82
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.82
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.82
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.79
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.77
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.77
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.77
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.77
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.76
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.76
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.75
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.75
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.75
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.74
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.74
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.74
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.74
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.73
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.73
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.72
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.72
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.72
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.68
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.67
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.65
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.65
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.65
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.64
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.64
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.63
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.63
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.63
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.62
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.59
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.59
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.58
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.57
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.56
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.56
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.55
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.54
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.54
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.52
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.52
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.51
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.51
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.51
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.51
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.51
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.51
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.51
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.51
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.51
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.51
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.51
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.51
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.5
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.5
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.5
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.5
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.5
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.5
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.5
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.5
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.5
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.5
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.5
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.5
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.5
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.5
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.5
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.5
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.49
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.49
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.49
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.49
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.49
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.49
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.49
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.49
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.49
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.48
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.48
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.48
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.47
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.45
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.45
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.43
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.43
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.42
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.41
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.41
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.4
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.4
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.4
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.39
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.39
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.38
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.38
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.38
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.37
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.37
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.36
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.36
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.36
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.36
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.36
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.36
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.34
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.34
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.33
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.33
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.32
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.32
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.32
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.32
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.32
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.32
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.31
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.31
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.3
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.29
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.29
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.29
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.28
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.27
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.27
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.26
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.24
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.23
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.23
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.21
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.19
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.19
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.19
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.18
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.18
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.16
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.15
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.14
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.12
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.09
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.09
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.08
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.07
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.06
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.05
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.05
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	99.05
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.05
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.03
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.03
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.99
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.98
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.97
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.97
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.97
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.97
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.96
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.96
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.96
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.95
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.95
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.94
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.94
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.94
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.93
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.92
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.92
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.92
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.91
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.91
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.42
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.88
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.87
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.37
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.84
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.81
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.81
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.81
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.8
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.8
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.78
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.26
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.76
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.68
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.65
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.65
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.6
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.58
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.57
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.57
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.54
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.54
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.53
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.52
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.52
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.47
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.46
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.46
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.46
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.79
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.41
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.39
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.39
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.39
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.35
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.7
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.31
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.31
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.26
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.22
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.22
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.22
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.51
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.12
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.02
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.97
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.55
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.52
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.5
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.29
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.93
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.59
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.36
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.26
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.21
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.11
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	94.25
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	93.92
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	93.75
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	92.82
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.64
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	91.63
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	91.33
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	91.29
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	91.27
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.37
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	89.79
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	89.57
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	89.52
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	89.31
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	87.27
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	87.01
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	86.7
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	86.65
4rxn_A	54	Rubredoxin; electron transfer(iron-sulfur protein)	86.45
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	86.16
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	85.97
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	84.47
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	80.19

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.94  E-value=1.4e-27  Score=116.26  Aligned_cols=86  Identities=21%  Similarity=0.442  Sum_probs=79.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      |++||+.|.....|..|+++|++++||.|..|++.|.....|..|+..   ++||.|++|++.|.....|..|+++|+++
T Consensus        25 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             ETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            788999999999999999999999999999999999999999999976   78999999999999999999999998765


Q ss_pred             c------cCCCCcCC
Q psy4084          78 F------DLKSKLCT   86 (86)
Q Consensus        78 ~------~~~c~~C~   86 (86)
                      +      +|+|..|+
T Consensus       105 ~p~~~~k~~~C~~C~  119 (133)
T 2lt7_A          105 DPSGDSKLYRLHPCR  119 (133)
T ss_dssp             CTTSSSCCEEECCCC
T ss_pred             CCCCCCCCeecCCCC
Confidence            4      46777774

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=8.3e-26  Score=108.58  Aligned_cols=86  Identities=26%  Similarity=0.548  Sum_probs=82.1

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC------CcceecccccccccCHHHHHHHHHhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS------DRQFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~------~~~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      |+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..      +++|.|+.|++.|.....|..|+++|
T Consensus        10 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   89 (124)
T 2dlq_A           10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH   89 (124)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            789999999999999999999999999999999999999999999862      67899999999999999999999999


Q ss_pred             CCCccCCCCcCC
Q psy4084          75 LQTFDLKSKLCT   86 (86)
Q Consensus        75 ~~~~~~~c~~C~   86 (86)
                      +++++|.|+.|+
T Consensus        90 ~~~~~~~C~~C~  101 (124)
T 2dlq_A           90 TGEMPYKCSSCS  101 (124)
T ss_dssp             SSSCSEECSSSC
T ss_pred             CCCCCccCCCcc
Confidence            999999999996

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.92  E-value=5.3e-25  Score=112.38  Aligned_cols=86  Identities=28%  Similarity=0.528  Sum_probs=61.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      |+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..   +++|.|+.|++.|.....|..|+++|+++
T Consensus        80 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  159 (190)
T 2i13_A           80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE  159 (190)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCC
T ss_pred             CcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            556667777777777777777667777777777777777777776654   56777777777777777777777777777


Q ss_pred             ccCCCCcCC
Q psy4084          78 FDLKSKLCT   86 (86)
Q Consensus        78 ~~~~c~~C~   86 (86)
                      ++|.|+.|+
T Consensus       160 ~~~~C~~C~  168 (190)
T 2i13_A          160 KPYKCPECG  168 (190)
T ss_dssp             CCEECTTTC
T ss_pred             CCeECCCCC
Confidence            777777774

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.91  E-value=3.8e-24  Score=100.53  Aligned_cols=82  Identities=30%  Similarity=0.496  Sum_probs=78.3

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      |..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..   +++|.|..|++.|.....|..|+++|+++
T Consensus        20 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT   99 (106)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSC
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHHhCCC
Confidence            788999999999999999999999999999999999999999999986   68999999999999999999999999999


Q ss_pred             ccCCC
Q psy4084          78 FDLKS   82 (86)
Q Consensus        78 ~~~~c   82 (86)
                      ++|..
T Consensus       100 ~~~~~  104 (106)
T 2ee8_A          100 SSPTA  104 (106)
T ss_dssp             CCCCC
T ss_pred             CCCcC
Confidence            99865

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=2e-24  Score=103.17  Aligned_cols=86  Identities=20%  Similarity=0.495  Sum_probs=80.9

Q ss_pred             Ccc--hhhhccChHHHHhhHHHHhCCCceecc--cccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHh
Q psy4084           1 MSE--CMGKFTEYQVIRKHIRTFHSDRQFACH--MCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus         1 c~~--C~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      |..  |++.|.....|..|++.|.++++|.|.  .|++.|.....|..|+..   +++|.|..|++.|.....|..|+++
T Consensus         9 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   88 (119)
T 2jp9_A            9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT   88 (119)
T ss_dssp             CCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHH
Confidence            554  999999999999999999999999999  799999999999999886   7899999999999999999999999


Q ss_pred             CCCCccCCC--CcCC
Q psy4084          74 GLQTFDLKS--KLCT   86 (86)
Q Consensus        74 ~~~~~~~~c--~~C~   86 (86)
                      |+++++|.|  +.|+
T Consensus        89 h~~~~~~~C~~~~C~  103 (119)
T 2jp9_A           89 HTGEKPFSCRWPSCQ  103 (119)
T ss_dssp             HHTCCCEECCSTTCC
T ss_pred             hcCCCCeeCCCCCCc
Confidence            999999999  7885

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.90  E-value=3.6e-24  Score=109.29  Aligned_cols=86  Identities=27%  Similarity=0.525  Sum_probs=72.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      |+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..   +++|.|+.|++.|.....|..|+++|+++
T Consensus        52 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  131 (190)
T 2i13_A           52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE  131 (190)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCC
T ss_pred             CCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCC
Confidence            677888888888888888888888888888888888888888888765   67888888888888888888888888888


Q ss_pred             ccCCCCcCC
Q psy4084          78 FDLKSKLCT   86 (86)
Q Consensus        78 ~~~~c~~C~   86 (86)
                      ++|.|+.|+
T Consensus       132 ~~~~C~~C~  140 (190)
T 2i13_A          132 KPYKCPECG  140 (190)
T ss_dssp             CCEECTTTC
T ss_pred             CCeECCCCC
Confidence            888888885

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=1.5e-23  Score=96.96  Aligned_cols=81  Identities=19%  Similarity=0.393  Sum_probs=76.1

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      |..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..   +++|.|..|++.|.....|..|+++|+++
T Consensus        11 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             BTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcCC
Confidence            788999999999999999999999999999999999999999999975   78999999999999999999999999987


Q ss_pred             ccCC
Q psy4084          78 FDLK   81 (86)
Q Consensus        78 ~~~~   81 (86)
                      ++..
T Consensus        91 ~~p~   94 (96)
T 2dmd_A           91 SGPS   94 (96)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7643

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.90  E-value=1.8e-23  Score=94.18  Aligned_cols=76  Identities=20%  Similarity=0.463  Sum_probs=71.9

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      |+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..   +++|.|+.|++.|.....|..|+++|++
T Consensus         4 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A            4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            789999999999999999999999999999999999999999999875   7899999999999999999999999864

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.89  E-value=2.8e-23  Score=95.01  Aligned_cols=77  Identities=27%  Similarity=0.672  Sum_probs=71.3

Q ss_pred             chhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCcc
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFD   79 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~   79 (86)
                      .|++.|.....|..|+++|.++++|.|..|++.|.....|..|+..   +++|.|+.|++.|.....|..|+++|+++++
T Consensus        11 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             SCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHGGGGC---
T ss_pred             CCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHHHhcccCC
Confidence            6999999999999999999999999999999999999999999875   7899999999999999999999999988753

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.89  E-value=1.8e-23  Score=103.76  Aligned_cols=84  Identities=20%  Similarity=0.393  Sum_probs=41.8

Q ss_pred             CcchhhhccChHHHHhhHHH-HhCCCc--------eecccccccCCChHHHhhhhhC---Ccceeccc--ccccccCHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRT-FHSDRQ--------FACHMCIKVFPSQDKLRMHMLS---DRQFACHM--CIKVFPSQDK   66 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~-~~~~~~--------~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~--C~~~~~~~~~   66 (86)
                      |..|++.|.....|..|++. |.+..+        +.|..|++.|.....|..|+..   +++|.|..  |++.|.....
T Consensus        28 C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~  107 (155)
T 2rpc_A           28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSEN  107 (155)
T ss_dssp             CCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHH
T ss_pred             cccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHH
Confidence            44455555555555555554 333322        4455555555555555555443   34455544  5555555555


Q ss_pred             HHHHHHhCCCCccCCCCc
Q psy4084          67 LRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        67 l~~h~~~~~~~~~~~c~~   84 (86)
                      |..|+++|+++++|.|..
T Consensus       108 L~~H~~~h~~~~~~~C~~  125 (155)
T 2rpc_A          108 LKIHKRTHTGEKPFKCEF  125 (155)
T ss_dssp             HHHHHTTTCSSCSBCCSS
T ss_pred             HHHHHHhhCCCCCccCCC
Confidence            555555555555555543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=4.9e-23  Score=98.99  Aligned_cols=85  Identities=28%  Similarity=0.498  Sum_probs=78.5

Q ss_pred             Cc--chhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc--ccccccCHHHHHHHHHh
Q psy4084           1 MS--ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM--CIKVFPSQDKLRMHMLS   73 (86)
Q Consensus         1 c~--~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~--C~~~~~~~~~l~~h~~~   73 (86)
                      |+  .|++.|.....|..|++.| +.++|.|..|++.|.....|..|+..   +++|.|..  |++.|.....|..|+++
T Consensus         8 C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~   86 (124)
T 1ubd_C            8 CPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI   86 (124)
T ss_dssp             CCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHH
Confidence            55  8999999999999999998 88999999999999999999999886   68899986  99999999999999999


Q ss_pred             CCCCccCCCC--cCC
Q psy4084          74 GLQTFDLKSK--LCT   86 (86)
Q Consensus        74 ~~~~~~~~c~--~C~   86 (86)
                      |+++++|.|.  .|+
T Consensus        87 h~~~~~~~C~~~~C~  101 (124)
T 1ubd_C           87 HTGDRPYVCPFDGCN  101 (124)
T ss_dssp             HHCCCCCCCCSTTCC
T ss_pred             hCCCCceECCCCCCC
Confidence            9999999995  485

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=2.2e-22  Score=99.88  Aligned_cols=83  Identities=22%  Similarity=0.457  Sum_probs=79.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceeccc--ccccCCChHHHhhhhhC---Ccceeccc--ccccccCHHHHHHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHM--CIKVFPSQDKLRMHMLS---DRQFACHM--CIKVFPSQDKLRMHMLS   73 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~---~~~~~C~~--C~~~~~~~~~l~~h~~~   73 (86)
                      |..|++.|.....|..|++.|.++++|.|..  |++.|.....|..|+..   +++|.|..  |++.|.....|..|+++
T Consensus        65 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~  144 (155)
T 2rpc_A           65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV  144 (155)
T ss_dssp             CTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTT
T ss_pred             CCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHH
Confidence            7789999999999999999999999999998  99999999999999986   68999997  99999999999999999


Q ss_pred             CCCCccCCCC
Q psy4084          74 GLQTFDLKSK   83 (86)
Q Consensus        74 ~~~~~~~~c~   83 (86)
                      |+++++|.|+
T Consensus       145 H~~~k~~~c~  154 (155)
T 2rpc_A          145 HTSDKSGPSS  154 (155)
T ss_dssp             TTSCCCSCSC
T ss_pred             hcCCCCCCCC
Confidence            9999999986

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=1.2e-22  Score=100.76  Aligned_cols=85  Identities=22%  Similarity=0.488  Sum_probs=60.2

Q ss_pred             cchhhhccChHHHHhhHHHHhCCCceeccc--ccccCCChHHHhhhhhC---Ccceeccc--ccccccCHHHHHHHH-Hh
Q psy4084           2 SECMGKFTEYQVIRKHIRTFHSDRQFACHM--CIKVFPSQDKLRMHMLS---DRQFACHM--CIKVFPSQDKLRMHM-LS   73 (86)
Q Consensus         2 ~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~---~~~~~C~~--C~~~~~~~~~l~~h~-~~   73 (86)
                      ..|++.|.....|..|++.|.++++|.|..  |++.|.....|..|+..   +++|.|+.  |++.|.....|..|+ +.
T Consensus        43 ~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~  122 (155)
T 2gli_A           43 SRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT  122 (155)
T ss_dssp             TTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHT
T ss_pred             cchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHh
Confidence            345577777777777777777777777764  77777777777777664   56677776  777777777777776 56


Q ss_pred             CCCCccCCCCc--CC
Q psy4084          74 GLQTFDLKSKL--CT   86 (86)
Q Consensus        74 ~~~~~~~~c~~--C~   86 (86)
                      |.++++|.|+.  |+
T Consensus       123 H~~~~~~~C~~~~C~  137 (155)
T 2gli_A          123 HSNEKPYVCKLPGCT  137 (155)
T ss_dssp             TCSCCCEECCSTTTC
T ss_pred             cCCCCCeeCCCCCCc
Confidence            77777777766  64

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.87  E-value=4.2e-22  Score=101.66  Aligned_cols=85  Identities=22%  Similarity=0.494  Sum_probs=60.5

Q ss_pred             cchhhhccChHHHHhhHHHHhCCCceecc--cccccCCChHHHhhhhh-C----Ccceec--ccccccccCHHHHHHHHH
Q psy4084           2 SECMGKFTEYQVIRKHIRTFHSDRQFACH--MCIKVFPSQDKLRMHML-S----DRQFAC--HMCIKVFPSQDKLRMHML   72 (86)
Q Consensus         2 ~~C~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~-~----~~~~~C--~~C~~~~~~~~~l~~h~~   72 (86)
                      +.|++.|.....|..|+++|.++++|.|.  .|++.|.....|..|+. .    .++|.|  +.|++.|.....|..|++
T Consensus        48 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~  127 (190)
T 1tf6_A           48 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF  127 (190)
T ss_dssp             TTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHG
T ss_pred             CCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHH
Confidence            56777777777777777777777777777  67777777777777762 1    456777  667777777777777777


Q ss_pred             hCCCCccCCCCc--CC
Q psy4084          73 SGLQTFDLKSKL--CT   86 (86)
Q Consensus        73 ~~~~~~~~~c~~--C~   86 (86)
                      +|+++++|.|..  |+
T Consensus       128 ~H~~~~~~~C~~~~C~  143 (190)
T 1tf6_A          128 SHTQQLPYECPHEGCD  143 (190)
T ss_dssp             GGSSSCSSBCCSSSCC
T ss_pred             HhCCCCCccCCCCCCC
Confidence            777777777765  64

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=4.3e-22  Score=91.82  Aligned_cols=77  Identities=21%  Similarity=0.461  Sum_probs=71.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---C--cceecccccccccCHHHHHHHHH-hC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---D--RQFACHMCIKVFPSQDKLRMHML-SG   74 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~--~~~~C~~C~~~~~~~~~l~~h~~-~~   74 (86)
                      |..|++.|.....|..|+++|.++++|.|..|++.|.....|..|+..   +  ++|.|..|++.|.....|..|++ .|
T Consensus        10 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   89 (95)
T 2yt9_A           10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH   89 (95)
T ss_dssp             CSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTS
T ss_pred             CCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhc
Confidence            789999999999999999999999999999999999999999999875   3  89999999999999999999996 67


Q ss_pred             CCC
Q psy4084          75 LQT   77 (86)
Q Consensus        75 ~~~   77 (86)
                      .++
T Consensus        90 ~~~   92 (95)
T 2yt9_A           90 SGP   92 (95)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=5.5e-22  Score=93.33  Aligned_cols=82  Identities=18%  Similarity=0.237  Sum_probs=75.6

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC--CcceecccccccccCHHHHHHHHH-hCCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS--DRQFACHMCIKVFPSQDKLRMHML-SGLQT   77 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~   77 (86)
                      |..|++.|.....|..|++.|.  ++|.|..|++.|.....|..|+..  +++|.|..|++.|.....|..|++ .|.++
T Consensus        19 C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   96 (107)
T 1wjp_A           19 CRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN   96 (107)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCCHHHHHHHHHHHcCCC
Confidence            7899999999999999999984  689999999999999999999853  789999999999999999999997 89999


Q ss_pred             ccCCCCc
Q psy4084          78 FDLKSKL   84 (86)
Q Consensus        78 ~~~~c~~   84 (86)
                      ++|.+..
T Consensus        97 ~~~~~~~  103 (107)
T 1wjp_A           97 NMAPTSG  103 (107)
T ss_dssp             CCCCCCC
T ss_pred             CCCCCCC
Confidence            9998763

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.85  E-value=3.1e-21  Score=91.09  Aligned_cols=74  Identities=26%  Similarity=0.468  Sum_probs=70.3

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      | .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..   +++|.|..|++.|.....|..|+++|+
T Consensus        13 C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~   89 (110)
T 2csh_A           13 C-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCT   89 (110)
T ss_dssp             C-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHHH
T ss_pred             c-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHcc
Confidence            6 7999999999999999999999999999999999999999999986   689999999999999999999999864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=3e-21  Score=95.70  Aligned_cols=86  Identities=22%  Similarity=0.487  Sum_probs=78.0

Q ss_pred             CcchhhhccChHHHHhhHH---HHhCCCceecccc-----cccCCChHHHhhhhhC---Ccceeccc--ccccccCHHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIR---TFHSDRQFACHMC-----IKVFPSQDKLRMHMLS---DRQFACHM--CIKVFPSQDKL   67 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~---~~~~~~~~~c~~c-----~~~~~~~~~l~~h~~~---~~~~~C~~--C~~~~~~~~~l   67 (86)
                      |+.|++.|.+...|..|++   .|.++++|.|..|     ++.|.....|..|+..   +++|.|+.  |++.|.....|
T Consensus         6 C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   85 (155)
T 2gli_A            6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENL   85 (155)
T ss_dssp             BTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHH
T ss_pred             cCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHH
Confidence            6789999999999999998   6778899998753     4899999999999875   68999985  99999999999


Q ss_pred             HHHHHhCCCCccCCCCc--CC
Q psy4084          68 RMHMLSGLQTFDLKSKL--CT   86 (86)
Q Consensus        68 ~~h~~~~~~~~~~~c~~--C~   86 (86)
                      ..|+++|.++++|.|+.  |+
T Consensus        86 ~~H~~~h~~~~~~~C~~~~C~  106 (155)
T 2gli_A           86 KTHLRSHTGEKPYMCEHEGCS  106 (155)
T ss_dssp             HHHHHHTTTCCCEECCSTTCC
T ss_pred             HHHHHHcCCCCCeeCCCCCCC
Confidence            99999999999999998  85

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.85  E-value=7.3e-22  Score=94.88  Aligned_cols=80  Identities=28%  Similarity=0.540  Sum_probs=71.0

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceeccc--ccccCCChHHHhhhhhC---Ccceecc--cccccccCHHHHHHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHM--CIKVFPSQDKLRMHMLS---DRQFACH--MCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~---~~~~~C~--~C~~~~~~~~~l~~h~~~   73 (86)
                      |+.|++.|.....|..|++.|.++++|.|..  |++.|.....|..|+..   +++|.|+  .|++.|.....|..|+++
T Consensus        37 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  116 (124)
T 1ubd_C           37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT  116 (124)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHH
Confidence            7899999999999999999999999999986  99999999999999975   7899996  599999999999999999


Q ss_pred             CCCCccC
Q psy4084          74 GLQTFDL   80 (86)
Q Consensus        74 ~~~~~~~   80 (86)
                      |++++++
T Consensus       117 H~~~k~~  123 (124)
T 1ubd_C          117 HAKAKNN  123 (124)
T ss_dssp             HC-----
T ss_pred             HcccccC
Confidence            9998875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.84  E-value=1.4e-20  Score=95.99  Aligned_cols=85  Identities=20%  Similarity=0.482  Sum_probs=78.5

Q ss_pred             cchhhhccChHHHHhhHHHHhCCCceec--ccccccCCChHHHhhhhhC---Ccceecc--cccccccCHHHHHHHH-Hh
Q psy4084           2 SECMGKFTEYQVIRKHIRTFHSDRQFAC--HMCIKVFPSQDKLRMHMLS---DRQFACH--MCIKVFPSQDKLRMHM-LS   73 (86)
Q Consensus         2 ~~C~~~~~~~~~l~~h~~~~~~~~~~~c--~~c~~~~~~~~~l~~h~~~---~~~~~C~--~C~~~~~~~~~l~~h~-~~   73 (86)
                      +.|++.|.....|..|++.|.++++|.|  ..|++.|.....|..|+..   +++|.|.  .|++.|.....|..|+ +.
T Consensus        18 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~   97 (190)
T 1tf6_A           18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF   97 (190)
T ss_dssp             TTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTT
T ss_pred             CCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHh
Confidence            6899999999999999999999999999  8899999999999999986   6899999  8999999999999999 55


Q ss_pred             C-CCCccCCC--CcCC
Q psy4084          74 G-LQTFDLKS--KLCT   86 (86)
Q Consensus        74 ~-~~~~~~~c--~~C~   86 (86)
                      | .++++|.|  +.|+
T Consensus        98 h~~~~~~~~C~~~~C~  113 (190)
T 1tf6_A           98 HNIKICVYVCHFENCG  113 (190)
T ss_dssp             SSTTTSCCEECSSSSC
T ss_pred             cCCCcceeeCCCCCCc
Confidence            6 46789999  8885

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=7.8e-21  Score=90.63  Aligned_cols=72  Identities=26%  Similarity=0.625  Sum_probs=68.9

Q ss_pred             chhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceec--ccccccccCHHHHHHHHHhC
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC--HMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C--~~C~~~~~~~~~l~~h~~~~   74 (86)
                      .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..   +++|.|  +.|++.|.....|..|+++|
T Consensus        43 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           43 DCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             TCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999986   789999  89999999999999999886

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.84  E-value=4.5e-21  Score=87.43  Aligned_cols=75  Identities=27%  Similarity=0.577  Sum_probs=69.9

Q ss_pred             Ccc--hhhhccChHHHHhhHHHHhCCCceecc--cccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHh
Q psy4084           1 MSE--CMGKFTEYQVIRKHIRTFHSDRQFACH--MCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus         1 c~~--C~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      |..  |++.|.....|..|++.|.++++|.|+  .|++.|.....|..|+..   +++|.|+.|++.|.....|..|+++
T Consensus         8 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A            8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHHHHh
Confidence            566  999999999999999999999999997  599999999999999875   7899999999999999999999998


Q ss_pred             CC
Q psy4084          74 GL   75 (86)
Q Consensus        74 ~~   75 (86)
                      |.
T Consensus        88 H~   89 (89)
T 2wbs_A           88 HF   89 (89)
T ss_dssp             GC
T ss_pred             hC
Confidence            73

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.84  E-value=2.1e-22  Score=98.05  Aligned_cols=71  Identities=18%  Similarity=0.398  Sum_probs=66.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      .|.+.|.|+++|.|..|++.|.....|..|+..   ++||.|+.|++.|.....|..|+++|.++++|.|+.|+
T Consensus        12 h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~   85 (133)
T 2lt7_A           12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACG   85 (133)
T ss_dssp             EEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSC
T ss_pred             hceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCC
Confidence            455678899999999999999999999999986   78999999999999999999999999999999999996

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=87.75  Aligned_cols=74  Identities=26%  Similarity=0.577  Sum_probs=69.3

Q ss_pred             chhhhccChHHHHhhHHHHhCCCceecc--cccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCC
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHSDRQFACH--MCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      .|++.|.....|..|++.|.++++|.|.  .|++.|.....|..|+..   +++|.|+.|++.|.....|..|+++|.+
T Consensus        22 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             SCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            4999999999999999999999999996  699999999999999875   7899999999999999999999999853

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.83  E-value=5.8e-21  Score=81.39  Aligned_cols=55  Identities=25%  Similarity=0.455  Sum_probs=49.9

Q ss_pred             CCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          24 DRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        24 ~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      |+||.|..|++.|.....|..|++.   ++||.|.+||+.|...+.|..|+++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999999999999886   789999999999999999999999998865

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.83  E-value=4.4e-21  Score=86.97  Aligned_cols=74  Identities=22%  Similarity=0.377  Sum_probs=68.0

Q ss_pred             HHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---C----cceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          13 VIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---D----RQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        13 ~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~----~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++..|+++|+++++|.|..|++.|.....|..|+..   .    ++|.|..|++.|.....|..|+++|+++.++.|..|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            356799999999999999999999999999999863   2    689999999999999999999999999999999987


Q ss_pred             C
Q psy4084          86 T   86 (86)
Q Consensus        86 ~   86 (86)
                      +
T Consensus        82 ~   82 (86)
T 1x6h_A           82 G   82 (86)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=89.55  Aligned_cols=83  Identities=16%  Similarity=0.267  Sum_probs=72.4

Q ss_pred             CcchhhhccChHHHHhhHHH--HhCCCcee-cccccccC--CChHHHhhhhhC---CcceecccccccccCHHHHHHHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIRT--FHSDRQFA-CHMCIKVF--PSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHML   72 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~--~~~~~~~~-c~~c~~~~--~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~   72 (86)
                      |..|++.|.....|..|++.  |.+.+++. |..|++.|  .....|..|+..   ++||.|.+|++.|.....|..|++
T Consensus        22 C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~  101 (115)
T 2dmi_A           22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI  101 (115)
T ss_dssp             BSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHH
Confidence            78899999999999999998  77777655 99999998  888999999876   789999999999999999999999


Q ss_pred             hCCCCccCCCC
Q psy4084          73 SGLQTFDLKSK   83 (86)
Q Consensus        73 ~~~~~~~~~c~   83 (86)
                      .|+.......+
T Consensus       102 ~hh~~~~~~~~  112 (115)
T 2dmi_A          102 KTKHYQKVSGP  112 (115)
T ss_dssp             HTTTTTCSCCC
T ss_pred             HhCCcccCCCC
Confidence            98766555443

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.82  E-value=5e-22  Score=90.61  Aligned_cols=75  Identities=20%  Similarity=0.323  Sum_probs=70.8

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC--CcceecccccccccCHHHHHHHHHhCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS--DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      |+.|++.|.....|..|+++|.++++|.|..|++.|.....|..|+..  ..++.|..|++.|.....|..|++.++
T Consensus         6 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C            6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHHHH
Confidence            789999999999999999999999999999999999999999999876  678999999999999999999998754

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.82  E-value=4.4e-20  Score=83.40  Aligned_cols=74  Identities=18%  Similarity=0.314  Sum_probs=68.8

Q ss_pred             cchhhhccChHHHHhhHHHHhCCCceeccc--ccccCCChHHHhhhhhCCcceeccc---ccccccCHHHHHHHHHhCC
Q psy4084           2 SECMGKFTEYQVIRKHIRTFHSDRQFACHM--CIKVFPSQDKLRMHMLSDRQFACHM---CIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus         2 ~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~C~~---C~~~~~~~~~l~~h~~~~~   75 (86)
                      +.||+.|.....|..|+++|.++++|.|+.  |++.|.....|..|+.....|.|..   |++.|.....|..|+++|+
T Consensus         7 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A            7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             TTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHSEECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            789999999999999999999999999988  9999999999999998722299999   9999999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=8.9e-20  Score=87.42  Aligned_cols=77  Identities=23%  Similarity=0.521  Sum_probs=70.4

Q ss_pred             CcchhhhccChHHHHhhHHH---HhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHh-
Q psy4084           1 MSECMGKFTEYQVIRKHIRT---FHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLS-   73 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~---~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~-   73 (86)
                      |+.|++.|.....|..|++.   +.++++|.|..|++.|.....|..|+..   ++||.|+.|++.|.....|..|++. 
T Consensus        38 C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  117 (124)
T 2dlq_A           38 CPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKL  117 (124)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHH
Confidence            78999999999999999996   5788999999999999999999999985   7899999999999999999999985 


Q ss_pred             CCCC
Q psy4084          74 GLQT   77 (86)
Q Consensus        74 ~~~~   77 (86)
                      |.++
T Consensus       118 H~~~  121 (124)
T 2dlq_A          118 HSGP  121 (124)
T ss_dssp             SSCS
T ss_pred             CCCC
Confidence            5544

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=3.1e-19  Score=79.49  Aligned_cols=63  Identities=21%  Similarity=0.369  Sum_probs=58.9

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      .+.++++|.|..|++.|.....|..|+..   +++|.|..|++.|.....|..|+++|+++++|+|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            45678899999999999999999999986   6899999999999999999999999999999987

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=8.3e-19  Score=80.86  Aligned_cols=66  Identities=24%  Similarity=0.478  Sum_probs=61.9

Q ss_pred             HhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          21 FHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        21 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      +.++++|.|..|++.|.....|..|+..   +++|.|..|++.|.....|..|++.|+++++|.|..|+
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   71 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICP   71 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCC
Confidence            4568899999999999999999999986   68999999999999999999999999999999999995

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=9.8e-20  Score=84.52  Aligned_cols=75  Identities=20%  Similarity=0.271  Sum_probs=66.4

Q ss_pred             ccChHHHHhhHHHHhCCCceecccccccCC-ChHHHhhhhhC----CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084           8 FTEYQVIRKHIRTFHSDRQFACHMCIKVFP-SQDKLRMHMLS----DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus         8 ~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~-~~~~l~~h~~~----~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      +.....+..|++.|.++++|.|..|++.|. ....|..|+..    +++|.|.+|++.|.....|..|+++|+++++...
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~   85 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA   85 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCC
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCC
Confidence            344455678999999999999999999999 99999999875    5789999999999999999999999998888643

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.7e-18  Score=80.11  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=66.9

Q ss_pred             hccChHHHHhhHHHHhCCCceecccccccC-CChHHHhhhhhC--CcceecccccccccCHHHHHHH-HHhCCCCccCCC
Q psy4084           7 KFTEYQVIRKHIRTFHSDRQFACHMCIKVF-PSQDKLRMHMLS--DRQFACHMCIKVFPSQDKLRMH-MLSGLQTFDLKS   82 (86)
Q Consensus         7 ~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~-~~~~~l~~h~~~--~~~~~C~~C~~~~~~~~~l~~h-~~~~~~~~~~~c   82 (86)
                      .|.....+..|++.+.++++|.|..|++.| .....|..|+..  +++|.|.+|++.|.....|..| +++|.+...+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCSC
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCCCC
Confidence            456667788999999999999999999999 999999999875  7899999999999999999999 888876555543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.1e-18  Score=77.95  Aligned_cols=65  Identities=23%  Similarity=0.461  Sum_probs=54.4

Q ss_pred             hCCCceeccc--ccccCCChHHHhhhhh-C---Ccceeccc--ccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          22 HSDRQFACHM--CIKVFPSQDKLRMHML-S---DRQFACHM--CIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        22 ~~~~~~~c~~--c~~~~~~~~~l~~h~~-~---~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      +++++|.|..  |++.|.....|..|+. .   +++|.|+.  |++.|.....|..|+++|+++++|.|+.|+
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~   75 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG   75 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCC
Confidence            4567788886  8888888888888876 3   67888888  999999999999999988888899998885

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.7e-22  Score=89.20  Aligned_cols=70  Identities=16%  Similarity=0.133  Sum_probs=64.7

Q ss_pred             HHHHhhHHHHhCCCceecccccccCCChHHHhhhhhCCcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          12 QVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        12 ~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ..|..|++.|.++++|.|..|++.|.....|..    +++|.|+.|++.|.....|..|+++|+++++|.|+.|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~----~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR----RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC----SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc----CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            457789999999999999999999998888776    7899999999999999999999999999999999987

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.1e-18  Score=82.29  Aligned_cols=66  Identities=24%  Similarity=0.443  Sum_probs=62.1

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      .|+++++|.| .|++.|.....|..|+..   +++|.|..|++.|.....|..|++.|+++++|.|..|+
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   72 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA   72 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCc
Confidence            4788999999 899999999999999986   68999999999999999999999999999999999995

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.4e-19  Score=84.23  Aligned_cols=69  Identities=16%  Similarity=0.214  Sum_probs=63.9

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC-CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS-DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~-~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      +++.|.++++|.|..|++.|.....|..|+.. .++|.|..|++.|.....|..|+. |.++++|.|+.|+
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~   76 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECM   76 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGT
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCcccc
Confidence            45678899999999999999999999999987 689999999999999999999996 9999999999985

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=9.4e-19  Score=81.63  Aligned_cols=65  Identities=15%  Similarity=0.308  Sum_probs=58.6

Q ss_pred             HhCCCceecccccccCCChHHHhhhhh--C-----CcceecccccccccCHHHHHHH-HHhCCCCccCCCCcC
Q psy4084          21 FHSDRQFACHMCIKVFPSQDKLRMHML--S-----DRQFACHMCIKVFPSQDKLRMH-MLSGLQTFDLKSKLC   85 (86)
Q Consensus        21 ~~~~~~~~c~~c~~~~~~~~~l~~h~~--~-----~~~~~C~~C~~~~~~~~~l~~h-~~~~~~~~~~~c~~C   85 (86)
                      .+|++||.|..|++.|.....|..|+.  .     ++||.|..|++.|.....|..| +++|.++++|.|..+
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEEC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcc
Confidence            457899999999999999999999985  2     5789999999999999999999 899999999999753

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.75  E-value=1.5e-18  Score=83.88  Aligned_cols=69  Identities=23%  Similarity=0.426  Sum_probs=62.2

Q ss_pred             ccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC-CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084           8 FTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS-DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus         8 ~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~-~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      |.....|..|+ .|++++||.|..|++.|.....|..|+.. ++||.|..|++.|.....|..|+++|++.
T Consensus        57 ~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           57 LDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            34667777777 68899999999999999999999999987 78999999999999999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=4e-18  Score=78.42  Aligned_cols=65  Identities=25%  Similarity=0.495  Sum_probs=60.6

Q ss_pred             hCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCC--ccCCCCcCC
Q psy4084          22 HSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQT--FDLKSKLCT   86 (86)
Q Consensus        22 ~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~--~~~~c~~C~   86 (86)
                      .++++|.|..|++.|.....|..|+..   +++|.|..|++.|.....|..|++.|+++  ++|.|..|+
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~   72 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCG   72 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCcc
Confidence            467899999999999999999999985   68999999999999999999999999887  899999996

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.74  E-value=3.1e-18  Score=75.70  Aligned_cols=61  Identities=21%  Similarity=0.447  Sum_probs=56.4

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccC
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDL   80 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~   80 (86)
                      .+.++++|.|..|++.|.....|..|+..   +++|.|..|++.|.....|..|+++|+++++|
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            45678899999999999999999999975   78999999999999999999999999999886

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.74  E-value=3.1e-18  Score=72.89  Aligned_cols=48  Identities=21%  Similarity=0.371  Sum_probs=46.6

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |.+||+.|.....|..|+++|++++||.|..|++.|.....|..|++.
T Consensus         7 C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc
Confidence            789999999999999999999999999999999999999999999875

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=1e-20  Score=89.85  Aligned_cols=76  Identities=18%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             hHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC-----Ccc-eecccccccc--cCHHHHHHHHHhCCCCccCCC
Q psy4084          11 YQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS-----DRQ-FACHMCIKVF--PSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        11 ~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~-----~~~-~~C~~C~~~~--~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      ...|..|+++|+++++|.|..|++.|.....|..|+..     .++ +.|..|++.|  .....|..|+++|.++++|.|
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C   83 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKC   83 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceEC
Confidence            34577899999999999999999999999999999874     344 4599999999  899999999999999999999


Q ss_pred             CcCC
Q psy4084          83 KLCT   86 (86)
Q Consensus        83 ~~C~   86 (86)
                      +.|+
T Consensus        84 ~~C~   87 (115)
T 2dmi_A           84 MYCG   87 (115)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            9996

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=8.1e-18  Score=78.79  Aligned_cols=65  Identities=28%  Similarity=0.605  Sum_probs=60.7

Q ss_pred             hCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          22 HSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        22 ~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ..+++|.|..|++.|.....|..|+..   +++|.|..|++.|.....|..|++.|+++++|.|..|+
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   80 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG   80 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcC
Confidence            456789999999999999999999875   68999999999999999999999999999999999996

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=8.7e-19  Score=78.02  Aligned_cols=64  Identities=22%  Similarity=0.489  Sum_probs=57.5

Q ss_pred             HHhhHHHHhCCCceecccccccCCChHHHhhhhh-C----CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084          14 IRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML-S----DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        14 l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~----~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      +.+|+++|++++||.|..|++.|.....|..|+. .    .++|.|+.|++.|.....|..|+++++..
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            4578899999999999999999999999999986 2    27999999999999999999999986643

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=5.1e-18  Score=75.73  Aligned_cols=61  Identities=23%  Similarity=0.442  Sum_probs=56.7

Q ss_pred             cchhhhccChHHHHhhHH-HHhCCCceeccc--ccccCCChHHHhhhhhC---Ccceeccccccccc
Q psy4084           2 SECMGKFTEYQVIRKHIR-TFHSDRQFACHM--CIKVFPSQDKLRMHMLS---DRQFACHMCIKVFP   62 (86)
Q Consensus         2 ~~C~~~~~~~~~l~~h~~-~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~   62 (86)
                      +.|++.|.....|..|++ .|.++++|.|..  |++.|.....|..|+..   ++||.|..|++.|.
T Consensus        13 ~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             TTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            459999999999999999 799999999999  99999999999999986   78999999999873

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.73  E-value=3.6e-18  Score=77.86  Aligned_cols=64  Identities=23%  Similarity=0.604  Sum_probs=58.5

Q ss_pred             CCCceecc--cccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          23 SDRQFACH--MCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        23 ~~~~~~c~--~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ++++|.|+  .|++.|.....|..|+..   +++|.|..|++.|.....|..|+++|+++++|.|..|+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   69 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG   69 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCC
Confidence            46789998  699999999999999976   68999999999999999999999999999999999996

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=5e-18  Score=74.69  Aligned_cols=61  Identities=20%  Similarity=0.342  Sum_probs=56.1

Q ss_pred             HHHHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          18 IRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        18 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      .++|.++++|.|..|++.|.....|..|+..   +++|.|+.|++.|.....|..|+++|+++.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            4578899999999999999999999999986   789999999999999999999999987654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.72  E-value=5.6e-18  Score=75.96  Aligned_cols=61  Identities=26%  Similarity=0.591  Sum_probs=57.8

Q ss_pred             ceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ||.|..|++.|.....|..|+..   +++|.|+.|++.|.....|..|++.|+++++|.|..|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   64 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCG   64 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTS
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcc
Confidence            58999999999999999999975   78999999999999999999999999999999999986

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.1e-17  Score=73.24  Aligned_cols=62  Identities=24%  Similarity=0.293  Sum_probs=56.4

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccCC
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLK   81 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~   81 (86)
                      +|.++++|.|..|++.|.....|..|+..   +++|.|..|++.|.....|..|+++|+++++..
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            36788999999999999999999999986   789999999999999999999999999887754

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=2.2e-17  Score=71.41  Aligned_cols=58  Identities=19%  Similarity=0.517  Sum_probs=52.7

Q ss_pred             HHHhCCCceecccccccCCChHHHhhhhhC-----CcceecccccccccCHHHHHHHHHhCCC
Q psy4084          19 RTFHSDRQFACHMCIKVFPSQDKLRMHMLS-----DRQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        19 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~-----~~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      ++|+++++|.|..|++.|.....|..|+..     +++|.|+.|++.|...+.|..|++++++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            468899999999999999999999999753     5789999999999999999999998765

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.67  E-value=6.4e-17  Score=68.04  Aligned_cols=54  Identities=22%  Similarity=0.498  Sum_probs=42.6

Q ss_pred             CCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCC
Q psy4084          23 SDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        23 ~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      |+++|.|..|++.|.....|..|+..   ++||.|+.|++.|.....|..|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            35788888888888888888888875   6789999999999999999999988753

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.8e-16  Score=72.89  Aligned_cols=57  Identities=19%  Similarity=0.150  Sum_probs=46.5

Q ss_pred             eecccccccCCChHHHhhhhhC----Ccc--------eecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLS----DRQ--------FACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~----~~~--------~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      +.|..|++.|.....|..|+..    +++        |.|..|++.|.....|..|+++|+++++|.|+
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            5577777777777777776642    233        89999999999999999999999999999996

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.65  E-value=3.6e-16  Score=70.71  Aligned_cols=58  Identities=22%  Similarity=0.353  Sum_probs=51.0

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHh-CCCC
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLS-GLQT   77 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~-~~~~   77 (86)
                      .+.+.+++.|++|++.|.....|..|++.   ++||.|.+|++.|.....|..|++. |.++
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            34567789999999999999999999986   7899999999999999999999864 6554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.65  E-value=4.6e-16  Score=65.38  Aligned_cols=53  Identities=23%  Similarity=0.453  Sum_probs=39.4

Q ss_pred             ceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ||.|..|++.|.....|..|+..   +++|.|+.|++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            46677777777777777777654   567888888888888888888888877654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.64  E-value=1.8e-17  Score=75.36  Aligned_cols=62  Identities=23%  Similarity=0.551  Sum_probs=55.8

Q ss_pred             CCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          24 DRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        24 ~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ++||.|..|++.|.....|..|+..   ++||.|+.|++.|.....|..|++.|++ .+|.|..|+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~   65 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVE   65 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHH
Confidence            4789999999999999999999886   7899999999999999999999999874 778877663

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.64  E-value=4.2e-16  Score=70.79  Aligned_cols=63  Identities=19%  Similarity=0.465  Sum_probs=58.5

Q ss_pred             CCceeccc--ccccCCChHHHhhhhhC---Ccceecc--cccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          24 DRQFACHM--CIKVFPSQDKLRMHMLS---DRQFACH--MCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        24 ~~~~~c~~--c~~~~~~~~~l~~h~~~---~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ..+|.|..  |++.|.....|..|+..   +++|.|+  .|++.|.....|..|++.|.++++|.|..|+
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   72 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD   72 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSS
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCC
Confidence            46799999  99999999999999986   6889997  5999999999999999999999999999985

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.7e-16  Score=69.88  Aligned_cols=54  Identities=24%  Similarity=0.394  Sum_probs=50.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceec
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC   54 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C   54 (86)
                      |+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..   ++||.|
T Consensus        21 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            789999999999999999999999999999999999999999999986   677765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.63  E-value=2.5e-16  Score=71.24  Aligned_cols=48  Identities=25%  Similarity=0.499  Sum_probs=46.0

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |++||+.|.....|..|+++|++++||.|..|++.|.....|..|+..
T Consensus        31 C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK   78 (85)
T ss_dssp             CTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHT
T ss_pred             CCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcc
Confidence            889999999999999999999999999999999999999999999753

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=6.7e-16  Score=68.69  Aligned_cols=60  Identities=18%  Similarity=0.314  Sum_probs=52.0

Q ss_pred             HhCCCceecccccccCCChHHHhhhhhC------CcceecccccccccCHHHHHHHHHh-CCCCccC
Q psy4084          21 FHSDRQFACHMCIKVFPSQDKLRMHMLS------DRQFACHMCIKVFPSQDKLRMHMLS-GLQTFDL   80 (86)
Q Consensus        21 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~------~~~~~C~~C~~~~~~~~~l~~h~~~-~~~~~~~   80 (86)
                      |+++++|.|..|++.|.....|..|+..      +++|.|..|++.|.....|..|++. |.++.+.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            6789999999999999999999999864      4789999999999999999999954 5555544

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=70.39  Aligned_cols=64  Identities=22%  Similarity=0.512  Sum_probs=58.6

Q ss_pred             CCCceeccc--ccccCCChHHHhhhhhC---Ccceecc--cccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          23 SDRQFACHM--CIKVFPSQDKLRMHMLS---DRQFACH--MCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        23 ~~~~~~c~~--c~~~~~~~~~l~~h~~~---~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ..++|.|..  |++.|.....|..|+..   +++|.|+  .|++.|.....|..|+++|+++++|.|..|+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   82 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN   82 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSC
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCc
Confidence            356799996  99999999999999975   6899996  6999999999999999999999999999995

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.5e-15  Score=70.80  Aligned_cols=58  Identities=16%  Similarity=0.276  Sum_probs=52.0

Q ss_pred             CcchhhhccChHHHHhhHH-HH---hCCCceecccccccCCChHHHhhh-hhC---Ccceeccccc
Q psy4084           1 MSECMGKFTEYQVIRKHIR-TF---HSDRQFACHMCIKVFPSQDKLRMH-MLS---DRQFACHMCI   58 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~-~~---~~~~~~~c~~c~~~~~~~~~l~~h-~~~---~~~~~C~~C~   58 (86)
                      |..||+.|.....|..|++ .|   .+++||.|..|++.|.....|..| ++.   ++||.|..+.
T Consensus        21 C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           21 CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            7899999999999999998 58   568999999999999999999999 664   7899998754

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=5.3e-15  Score=62.68  Aligned_cols=53  Identities=28%  Similarity=0.669  Sum_probs=41.0

Q ss_pred             CceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHH-HhCCCC
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHM-LSGLQT   77 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~-~~~~~~   77 (86)
                      +||.|..|++.|.....|..|+..   +++|.|+.|++.|.....|..|+ +.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            467788888888888888888765   57788888888888888888887 456554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.58  E-value=2.3e-15  Score=66.32  Aligned_cols=48  Identities=17%  Similarity=0.415  Sum_probs=46.1

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..
T Consensus        20 C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   67 (74)
T 2lce_A           20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI   67 (74)
T ss_dssp             CTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHh
Confidence            789999999999999999999999999999999999999999999875

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.57  E-value=5e-15  Score=62.14  Aligned_cols=47  Identities=23%  Similarity=0.472  Sum_probs=45.3

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML   47 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~   47 (86)
                      |+.|++.|.....|..|+++|+++++|.|..|++.|.....|..|+.
T Consensus         7 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   53 (57)
T 3uk3_C            7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLE   53 (57)
T ss_dssp             CTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999976

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=5.5e-15  Score=64.90  Aligned_cols=56  Identities=27%  Similarity=0.630  Sum_probs=50.9

Q ss_pred             HHhCCCceecc--cccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCC
Q psy4084          20 TFHSDRQFACH--MCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        20 ~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      .+.++++|.|+  .|++.|.....|..|+..   +++|.|+.|++.|.....|..|+++|+
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            47788999997  599999999999999875   789999999999999999999999874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.56  E-value=6e-15  Score=61.89  Aligned_cols=48  Identities=31%  Similarity=0.555  Sum_probs=46.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |+.|++.|.....|..|+++|+++++|.|..|++.|.....|..|+..
T Consensus         4 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A            4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHS
T ss_pred             CCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=7.3e-15  Score=66.24  Aligned_cols=61  Identities=20%  Similarity=0.367  Sum_probs=55.1

Q ss_pred             CcchhhhccChHHHHhhHHHHhCC----CceecccccccCCChHHHhhhhhC---Ccceecccccccc
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSD----RQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVF   61 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~----~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~   61 (86)
                      |..|++.|.....|..|++.++..    ++|.|..|++.|.....|..|+..   ++++.|..|+..+
T Consensus        18 C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             CSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            789999999999999999987765    789999999999999999999986   6789999998764

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=3.8e-15  Score=64.36  Aligned_cols=57  Identities=23%  Similarity=0.337  Sum_probs=50.4

Q ss_pred             hCCCceecccccccCCChHHHhhhhhC--Ccceecc-cccccccCHHHHHHHHHhCCCCcc
Q psy4084          22 HSDRQFACHMCIKVFPSQDKLRMHMLS--DRQFACH-MCIKVFPSQDKLRMHMLSGLQTFD   79 (86)
Q Consensus        22 ~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~C~-~C~~~~~~~~~l~~h~~~~~~~~~   79 (86)
                      .+++||.|..|++.|. ...|..|+..  ++||.|+ .|++.|...+.|..|+++|...++
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4678999999999999 9999999864  7899999 999999999999999999876654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.54  E-value=6.6e-15  Score=66.19  Aligned_cols=58  Identities=26%  Similarity=0.569  Sum_probs=53.2

Q ss_pred             ceec--ccccccCCChHHHhhhhhC---Ccceeccc--ccccccCHHHHHHHHHhCCCCccCCCCc---CC
Q psy4084          26 QFAC--HMCIKVFPSQDKLRMHMLS---DRQFACHM--CIKVFPSQDKLRMHMLSGLQTFDLKSKL---CT   86 (86)
Q Consensus        26 ~~~c--~~c~~~~~~~~~l~~h~~~---~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~~~~~c~~---C~   86 (86)
                      ||.|  ..|++.|.....|..|+..   +++|.|+.  |++.|.....|..|+++|++   |.|..   |+
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~   68 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCS   68 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCC
Confidence            5889  8999999999999999876   78999988  99999999999999999987   88888   74

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.4e-14  Score=58.36  Aligned_cols=37  Identities=16%  Similarity=0.198  Sum_probs=35.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A           10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.6e-14  Score=61.18  Aligned_cols=47  Identities=21%  Similarity=0.587  Sum_probs=45.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHML   47 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~   47 (86)
                      |+.|++.|.....|..|+++|+++++|.|..|++.|.....|..|+.
T Consensus         5 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A            5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999974

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.7e-14  Score=58.03  Aligned_cols=37  Identities=16%  Similarity=0.147  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A           10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.6e-14  Score=58.16  Aligned_cols=37  Identities=16%  Similarity=0.311  Sum_probs=34.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A           10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.8e-14  Score=57.97  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|+.|++.|...+.|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A           10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.8e-14  Score=58.02  Aligned_cols=37  Identities=24%  Similarity=0.371  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A           10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.8e-14  Score=58.03  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A           10 GKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.4e-14  Score=58.29  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=34.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|+++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A           10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.51  E-value=1.4e-14  Score=58.33  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A           10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=2.4e-14  Score=66.09  Aligned_cols=47  Identities=23%  Similarity=0.476  Sum_probs=44.6

Q ss_pred             Ccchhhhc-cChHHHHhhHHHHhCCCceecccccccCCChHHHhhh-hhC
Q psy4084           1 MSECMGKF-TEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMH-MLS   48 (86)
Q Consensus         1 c~~C~~~~-~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h-~~~   48 (86)
                      |++|++.| .....|..|+++| ++++|.|..|++.|.....|..| +..
T Consensus        37 C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~   85 (96)
T 2ctd_A           37 CPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMAN   85 (96)
T ss_dssp             CTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHh
Confidence            78999999 9999999999999 99999999999999999999999 654

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.3e-14  Score=57.65  Aligned_cols=37  Identities=16%  Similarity=0.337  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A           10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.9e-14  Score=57.88  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|+++++|+|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A           10 EKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.51  E-value=1.5e-14  Score=58.18  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=34.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|...+.|..|+++|+++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A           10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=2.4e-14  Score=62.74  Aligned_cols=48  Identities=23%  Similarity=0.456  Sum_probs=46.0

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.
T Consensus        17 C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A           17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence            789999999999999999999999999999999999999999999874

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=2.1e-14  Score=62.61  Aligned_cols=48  Identities=29%  Similarity=0.443  Sum_probs=46.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |..|++.|.....|..|+++|+++++|.|..|++.|.....|..|+..
T Consensus        12 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~   59 (70)
T 1x5w_A           12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK   59 (70)
T ss_dssp             CSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999875

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.6e-14  Score=57.53  Aligned_cols=37  Identities=16%  Similarity=0.235  Sum_probs=34.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|...+.|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A           10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.2e-14  Score=57.74  Aligned_cols=37  Identities=19%  Similarity=0.358  Sum_probs=35.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A           10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.7e-14  Score=58.08  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=35.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A           10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.7e-14  Score=58.05  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A           10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.3e-14  Score=57.66  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=34.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A           10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.50  E-value=2.3e-14  Score=58.22  Aligned_cols=38  Identities=29%  Similarity=0.383  Sum_probs=36.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      +++|.|.+|++.|.....|..|+++|+++++|.|.+|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            68999999999999999999999999999999999996

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.7e-14  Score=58.09  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=34.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A           10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.6e-14  Score=57.52  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|+++++|+|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.8e-14  Score=58.03  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A           10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.50  E-value=1.8e-14  Score=58.00  Aligned_cols=37  Identities=19%  Similarity=0.318  Sum_probs=34.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A           10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.4e-14  Score=57.63  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=34.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A           10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.3e-14  Score=57.65  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A           10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3.7e-14  Score=57.04  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A           10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.9e-14  Score=57.88  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A           10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.1e-14  Score=57.81  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=35.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A           10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.49  E-value=1.7e-14  Score=58.08  Aligned_cols=37  Identities=16%  Similarity=0.308  Sum_probs=34.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A           10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            6789999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2.2e-14  Score=57.69  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A           10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.3e-14  Score=57.18  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2.1e-14  Score=57.76  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A           10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.4e-14  Score=57.60  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=34.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A           10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.49  E-value=3.3e-14  Score=57.22  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A           10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2.7e-14  Score=57.46  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.49  E-value=2.3e-14  Score=57.64  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=34.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|+|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A           10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=1.5e-14  Score=58.22  Aligned_cols=37  Identities=19%  Similarity=0.287  Sum_probs=34.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A           10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=2.5e-14  Score=57.55  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A           10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.7e-14  Score=58.07  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=34.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A           10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=3.8e-14  Score=57.00  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A           10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999875

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.48  E-value=2e-14  Score=57.87  Aligned_cols=37  Identities=19%  Similarity=0.243  Sum_probs=34.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A           10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.6e-14  Score=58.20  Aligned_cols=37  Identities=19%  Similarity=0.339  Sum_probs=34.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|...+.|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A           10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=2.6e-14  Score=57.50  Aligned_cols=37  Identities=16%  Similarity=0.290  Sum_probs=35.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A           10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=2.9e-14  Score=57.42  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=34.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=4e-14  Score=56.94  Aligned_cols=37  Identities=14%  Similarity=0.204  Sum_probs=34.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A           10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.47  E-value=4.9e-14  Score=56.47  Aligned_cols=38  Identities=16%  Similarity=0.364  Sum_probs=36.2

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|+.|+
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            68999999999999999999999999999999999996

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.6e-14  Score=55.95  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=35.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A           10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6899999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.6e-14  Score=58.19  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=33.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A           10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.7e-14  Score=57.51  Aligned_cols=37  Identities=14%  Similarity=0.175  Sum_probs=34.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.6e-14  Score=58.11  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=33.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A           10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=9.1e-14  Score=56.07  Aligned_cols=37  Identities=16%  Similarity=0.158  Sum_probs=34.5

Q ss_pred             CcceecccccccccCHHHHHHHHH-hCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHML-SGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~~~~~c~~C   85 (86)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A           10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            678999999999999999999999 9999999999987

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.1e-13  Score=59.56  Aligned_cols=48  Identities=21%  Similarity=0.471  Sum_probs=44.4

Q ss_pred             CcchhhhccChHHHHhhHHH-H-hCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRT-F-HSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~-~-~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |+.|++.|.....|..|++. | .++++|.|+.|++.|.....|..|+..
T Consensus        13 C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A           13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHH
Confidence            78999999999999999998 6 589999999999999999999999763

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=7e-14  Score=56.25  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=34.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            6889999999999999999999999999999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.5e-13  Score=55.23  Aligned_cols=37  Identities=19%  Similarity=0.256  Sum_probs=34.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A           10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6789999999999999999999999999999999875

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.6e-13  Score=60.88  Aligned_cols=47  Identities=21%  Similarity=0.332  Sum_probs=44.8

Q ss_pred             CcchhhhccChHHHHhhHHHHhC---CCceecccccccCCChHHHhhhhh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHS---DRQFACHMCIKVFPSQDKLRMHML   47 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~---~~~~~c~~c~~~~~~~~~l~~h~~   47 (86)
                      |..|++.|.....|..|+++|.+   +++|.|..|++.|.....|..|+.
T Consensus        10 C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A           10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHH
Confidence            78999999999999999999996   899999999999999999999985

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=3.2e-13  Score=59.18  Aligned_cols=46  Identities=26%  Similarity=0.716  Sum_probs=43.8

Q ss_pred             chhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      .|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.
T Consensus        26 ~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             TBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            6999999999999999999999999999999999999999999763

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.41  E-value=5e-13  Score=55.49  Aligned_cols=38  Identities=21%  Similarity=0.359  Sum_probs=28.8

Q ss_pred             CcceecccccccccCHHHHHHHHH-hCCCCccCCCCcCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHML-SGLQTFDLKSKLCT   86 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~~~~~c~~C~   86 (86)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~   48 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV   48 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCC
Confidence            567777777777777777777776 67777777777774

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=3.1e-13  Score=54.25  Aligned_cols=36  Identities=19%  Similarity=0.369  Sum_probs=33.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|+++++|.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A           10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            688999999999999999999999999999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=6.8e-14  Score=56.29  Aligned_cols=37  Identities=16%  Similarity=0.330  Sum_probs=34.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|..|++.|.....|..|+++|+++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6789999999999999999999999999999999987

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=7.7e-14  Score=64.52  Aligned_cols=48  Identities=21%  Similarity=0.423  Sum_probs=45.8

Q ss_pred             Ccchhhhcc-ChHHHHhhHHHHhC-CCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFT-EYQVIRKHIRTFHS-DRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~-~~~~l~~h~~~~~~-~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |.+|++.|. ....|..|+++|++ +++|.|..|++.|.....|..|++.
T Consensus        27 C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A           27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA   76 (98)
T ss_dssp             CTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHH
T ss_pred             CCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHH
Confidence            789999999 99999999999999 9999999999999999999999864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=3e-13  Score=54.35  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=33.2

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A           10 ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            688999999999999999999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.3e-13  Score=54.18  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=32.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A           10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            678999999999999999999999999999999874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.5e-13  Score=54.13  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A           10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.1e-13  Score=54.29  Aligned_cols=36  Identities=17%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A           10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.38  E-value=4.6e-13  Score=52.74  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=32.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            8 ENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            67899999999999999999999999999999985

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.38  E-value=3.4e-13  Score=54.18  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=33.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A           10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.9e-13  Score=54.00  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=32.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|+++++|.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A           10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=3.5e-13  Score=54.12  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=33.2

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      ++||.|..|++.|.....|..|+++|.++++|+|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A           10 QRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4.1e-13  Score=53.87  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=33.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.4e-13  Score=54.14  Aligned_cols=36  Identities=17%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A           10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.38  E-value=4.8e-13  Score=58.47  Aligned_cols=54  Identities=24%  Similarity=0.502  Sum_probs=43.0

Q ss_pred             HhCCCceeccc--ccccCCChHHHhhhhhC---Ccceeccc--ccccccCHHHHHHHHHhC
Q psy4084          21 FHSDRQFACHM--CIKVFPSQDKLRMHMLS---DRQFACHM--CIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        21 ~~~~~~~~c~~--c~~~~~~~~~l~~h~~~---~~~~~C~~--C~~~~~~~~~l~~h~~~~   74 (86)
                      ....++|.|..  |++.|.....|..|+..   +++|.|.+  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34567788877  88888888888888865   67888864  888888888888888765

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.5e-13  Score=54.13  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=32.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A           10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4.1e-13  Score=53.88  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=32.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A           10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            678999999999999999999999999999999874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=5.7e-13  Score=53.51  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A           10 KKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             SCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            678999999999999999999999999999999973

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.7e-13  Score=53.74  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A           10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=6.6e-13  Score=52.76  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=32.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A           10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            67899999999999999999999999999999985

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.7e-13  Score=53.72  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=32.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A           10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            678999999999999999999999999999999874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=6.3e-13  Score=53.35  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=33.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A           10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.5e-13  Score=53.82  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=32.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A           10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            678999999999999999999999999999999873

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.4e-13  Score=53.85  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=32.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.2e-13  Score=53.62  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=33.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A           10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.6e-13  Score=52.96  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=32.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A           10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            67899999999999999999999999999999885

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=57.34  Aligned_cols=47  Identities=26%  Similarity=0.549  Sum_probs=43.6

Q ss_pred             Ccc--hhhhccChHHHHhhHHHHhCCCceeccc--ccccCCChHHHhhhhh
Q psy4084           1 MSE--CMGKFTEYQVIRKHIRTFHSDRQFACHM--CIKVFPSQDKLRMHML   47 (86)
Q Consensus         1 c~~--C~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~   47 (86)
                      |..  |++.|.....|..|+++|+++++|.|..  |++.|.....|..|++
T Consensus        20 C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           20 CSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             CCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            556  9999999999999999999999999965  9999999999999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4.3e-13  Score=53.86  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A           10 GKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            678899999999999999999999999999999864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=6.5e-13  Score=52.82  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=32.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A           10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            68899999999999999999999999999999984

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.3e-13  Score=53.59  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=32.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A           10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            67899999999999999999999999999999986

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=9.1e-13  Score=52.21  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=33.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|+++++|.|++
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            678999999999999999999999999999999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.3e-12  Score=52.81  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=34.8

Q ss_pred             Ccceecc--cccccccCHHHHHHHHHhCCCCccCCCCcC
Q psy4084          49 DRQFACH--MCIKVFPSQDKLRMHMLSGLQTFDLKSKLC   85 (86)
Q Consensus        49 ~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C   85 (86)
                      +++|.|.  .|++.|.....|..|+++|.++++|+|..|
T Consensus        10 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A           10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6789998  899999999999999999999999999987

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1e-12  Score=51.72  Aligned_cols=35  Identities=17%  Similarity=0.371  Sum_probs=32.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      ++||.|..|++.|...+.|..|+++|.++++|.|.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            8 EKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            67899999999999999999999999999999884

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.7e-13  Score=53.74  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=32.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            678999999999999999999999999999999863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.1e-13  Score=53.87  Aligned_cols=36  Identities=17%  Similarity=0.272  Sum_probs=32.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|++
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A           10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            678999999999999999999999999999999874

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=7.2e-13  Score=52.66  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=31.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A           10 ENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            67899999999999999999999999999999885

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=7.2e-13  Score=52.69  Aligned_cols=35  Identities=17%  Similarity=0.318  Sum_probs=32.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A           10 RKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            67899999999999999999999999999999985

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=7.7e-13  Score=53.11  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=33.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCC-CccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQ-TFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~-~~~~~c~~   84 (86)
                      ++||.|..|++.|.....|..|+++|.+ +++|.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A           10 EKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999999999999 99999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1e-12  Score=52.75  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=33.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|+++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            678999999999999999999999999999999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.34  E-value=4.2e-13  Score=55.71  Aligned_cols=46  Identities=13%  Similarity=0.097  Sum_probs=32.6

Q ss_pred             cCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhCCCCccC
Q psy4084          35 VFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDL   80 (86)
Q Consensus        35 ~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~   80 (86)
                      .|.....|..|+..   +++|.|..|++.|...+.|..|+++|+++++|
T Consensus         5 ~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            5 RAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            34444444445443   56778888888888888888888888888776

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.8e-13  Score=55.00  Aligned_cols=42  Identities=14%  Similarity=0.281  Sum_probs=37.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            477889999999999999999999999999876   788999876

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=1.4e-12  Score=57.71  Aligned_cols=48  Identities=23%  Similarity=0.502  Sum_probs=43.9

Q ss_pred             CcchhhhccChHHHHhhHH-HHhCC-CceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIR-TFHSD-RQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~-~~~~~-~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |++|++.|.....|..|++ .|.++ ++|.|..|++.|.....|..|+..
T Consensus        18 C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~   67 (77)
T 2ct1_A           18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK   67 (77)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHH
Confidence            7899999999999999997 57664 899999999999999999999875

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.1e-13  Score=54.76  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=37.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            467788999999999999999999999999876   788999876

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=9.5e-13  Score=52.78  Aligned_cols=36  Identities=17%  Similarity=0.313  Sum_probs=32.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A           10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            678999999999999999999999999999999863

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=6.2e-13  Score=57.29  Aligned_cols=46  Identities=20%  Similarity=0.354  Sum_probs=43.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecc-cccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACH-MCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~-~c~~~~~~~~~l~~h~~~   48 (86)
                      |..|++.|. ...|..|+++ ++++||.|. .|++.|.....|..|+..
T Consensus        13 C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A           13 CTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             ccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            788999999 9999999999 999999999 999999999999999875

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.33  E-value=2.2e-13  Score=54.72  Aligned_cols=42  Identities=14%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            477889999999999999999999999999876   788999876

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.6e-12  Score=50.93  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=32.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            6889999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.6e-13  Score=54.50  Aligned_cols=42  Identities=14%  Similarity=0.171  Sum_probs=37.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477789999999999999999999999999876   788999876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.9e-13  Score=54.35  Aligned_cols=42  Identities=14%  Similarity=0.208  Sum_probs=37.5

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477889999999999999999999999999876   788999876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.8e-13  Score=54.43  Aligned_cols=42  Identities=21%  Similarity=0.346  Sum_probs=37.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467789999999999999999999999999876   788999876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.5e-13  Score=54.58  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=37.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            467789999999999999999999999999886   688999876

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.7e-12  Score=51.82  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=33.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            688999999999999999999999999999999963

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.6e-13  Score=54.53  Aligned_cols=42  Identities=19%  Similarity=0.291  Sum_probs=37.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477889999999999999999999999999886   788999876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.32  E-value=2.6e-13  Score=54.51  Aligned_cols=42  Identities=17%  Similarity=0.299  Sum_probs=36.9

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477788999999999999999999999999876   788998876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.7e-13  Score=54.43  Aligned_cols=42  Identities=17%  Similarity=0.261  Sum_probs=37.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477889999999999999999999999999876   688999876

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.32  E-value=2.6e-12  Score=50.48  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=32.0

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      ++||.|..|++.|...+.|..|+++|.++++|.|
T Consensus         9 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            6889999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2.3e-13  Score=54.69  Aligned_cols=42  Identities=17%  Similarity=0.209  Sum_probs=37.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477888999999999999999999999999876   788999876

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1e-12  Score=51.72  Aligned_cols=34  Identities=15%  Similarity=0.352  Sum_probs=31.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      ++||.|..|++.|...+.|..|+++|.++++|+|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            6789999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.3e-13  Score=54.63  Aligned_cols=42  Identities=19%  Similarity=0.329  Sum_probs=36.5

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467788999999999999999999999999875   688998876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.1e-13  Score=54.26  Aligned_cols=42  Identities=14%  Similarity=0.316  Sum_probs=37.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477889999999999999999999999999876   788999876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.2e-13  Score=54.70  Aligned_cols=42  Identities=14%  Similarity=0.155  Sum_probs=36.8

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            467788999999999999999999999999875   788999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.3e-13  Score=54.63  Aligned_cols=42  Identities=17%  Similarity=0.222  Sum_probs=37.0

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477788999999999999999999999999876   788999876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.32  E-value=2.6e-13  Score=54.47  Aligned_cols=42  Identities=17%  Similarity=0.229  Sum_probs=37.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477789999999999999999999999999876   788999876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.1e-13  Score=53.94  Aligned_cols=42  Identities=14%  Similarity=0.196  Sum_probs=36.9

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367788999999999999999999999999876   788999876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.32  E-value=2.2e-13  Score=54.76  Aligned_cols=42  Identities=14%  Similarity=0.233  Sum_probs=36.1

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467788899999999999999999999999875   788888876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.9e-13  Score=53.98  Aligned_cols=41  Identities=17%  Similarity=0.197  Sum_probs=36.5

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      |+++|.++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67788999999999999999999999999886   788999876

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.5e-13  Score=55.21  Aligned_cols=42  Identities=17%  Similarity=0.267  Sum_probs=36.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            477788999999999999999999999999875   788988876

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.2e-13  Score=52.34  Aligned_cols=34  Identities=18%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      ++||.|+.|++.|...+.|..|+++|.++++|.|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            6788899999999999999999999999999887

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.7e-13  Score=53.76  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=31.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A           10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            678899999999999999999999999999998874

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.8e-12  Score=51.99  Aligned_cols=36  Identities=17%  Similarity=0.331  Sum_probs=32.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            678999999999999999999999999999999863

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.4e-13  Score=54.59  Aligned_cols=42  Identities=14%  Similarity=0.201  Sum_probs=37.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477788999999999999999999999999876   788999876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2e-13  Score=54.81  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=36.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467788999999999999999999999999875   788988876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.6e-13  Score=54.00  Aligned_cols=41  Identities=20%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      |+++|+++++|.|..|++.|.....|..|+..   ++||.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45677888889999999999988888888875   678888765

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.4e-13  Score=54.63  Aligned_cols=42  Identities=14%  Similarity=0.211  Sum_probs=36.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467788899999999999999999999999875   788988876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.31  E-value=3.2e-13  Score=54.20  Aligned_cols=42  Identities=14%  Similarity=0.158  Sum_probs=37.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            467789999999999999999999999999876   788999876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.2e-13  Score=54.70  Aligned_cols=42  Identities=17%  Similarity=0.272  Sum_probs=36.1

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467788899999999999999999999999875   788888876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.3e-13  Score=54.18  Aligned_cols=42  Identities=17%  Similarity=0.184  Sum_probs=37.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477789999999999999999999999999876   788999876

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.7e-13  Score=54.05  Aligned_cols=42  Identities=17%  Similarity=0.262  Sum_probs=37.6

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999876   788999876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5.4e-13  Score=53.58  Aligned_cols=42  Identities=19%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            367788999999999999999999999999886   788999876

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.31  E-value=1.2e-12  Score=54.26  Aligned_cols=44  Identities=23%  Similarity=0.436  Sum_probs=36.0

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhh-C---CcceecccccccccC
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHML-S---DRQFACHMCIKVFPS   63 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~---~~~~~C~~C~~~~~~   63 (86)
                      .+.++++|.|..|++.|.....|..|+. .   ++||.|.+|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            3567788899999999988888888875 4   678889999888864

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.2e-12  Score=51.27  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=32.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      +++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A           10 KTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            67899999999999999999999999999999985

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.6e-13  Score=54.06  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=36.8

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999875   788988875

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.7e-13  Score=54.45  Aligned_cols=42  Identities=17%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|.++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            467788899999999999999999999999875   788888876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.3e-13  Score=54.64  Aligned_cols=42  Identities=17%  Similarity=0.250  Sum_probs=36.7

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467788999999999999999999999999875   788998876

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.30  E-value=2.2e-14  Score=61.30  Aligned_cols=53  Identities=17%  Similarity=0.406  Sum_probs=41.7

Q ss_pred             HHhhHHHHhCCCceecccccccCCChHHHhhhhhCCcceecccccccccCHHH
Q psy4084          14 IRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFPSQDK   66 (86)
Q Consensus        14 l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~~~~~~   66 (86)
                      |..|+++|++++||.|+.|++.|.....|..-...++||.|..|++.|....+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTT
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCcc
Confidence            45688889999999999999999888877611112789999999999876554

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3e-13  Score=54.33  Aligned_cols=42  Identities=17%  Similarity=0.328  Sum_probs=36.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467788899999999999999999999999875   788988876

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=4.6e-13  Score=53.77  Aligned_cols=42  Identities=14%  Similarity=0.230  Sum_probs=36.8

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367788999999999999999999999999876   788998876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.29  E-value=3.3e-13  Score=54.22  Aligned_cols=42  Identities=17%  Similarity=0.233  Sum_probs=36.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788999999999999999999999999875   788998876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.1e-13  Score=54.28  Aligned_cols=42  Identities=17%  Similarity=0.270  Sum_probs=35.8

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            467788899999999999999999999999875   788888876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.7e-13  Score=53.47  Aligned_cols=42  Identities=14%  Similarity=0.226  Sum_probs=37.0

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999876   788988764

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.1e-13  Score=53.81  Aligned_cols=42  Identities=14%  Similarity=0.158  Sum_probs=37.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhh-C---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHML-S---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~---~~~~~C~~C   57 (86)
                      .|+++|.++++|.|..|++.|.....|..|+. .   ++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            46778999999999999999999999999988 5   788999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.2e-13  Score=54.22  Aligned_cols=42  Identities=19%  Similarity=0.232  Sum_probs=36.7

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467788999999999999999999999999875   688998876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.4e-13  Score=53.81  Aligned_cols=42  Identities=19%  Similarity=0.249  Sum_probs=37.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            367788999999999999999999999999886   688999876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.6e-13  Score=54.07  Aligned_cols=42  Identities=17%  Similarity=0.192  Sum_probs=35.6

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            467788889999999999999999999999875   688888876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.28  E-value=6.2e-13  Score=53.40  Aligned_cols=42  Identities=14%  Similarity=0.187  Sum_probs=36.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            356778899999999999999999999999876   788988876

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=6e-13  Score=53.46  Aligned_cols=41  Identities=15%  Similarity=0.177  Sum_probs=34.6

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      |+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778888999999999999999999888875   678888876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8.2e-13  Score=53.01  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=30.2

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSK   83 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~   83 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A           10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            67888888888888888899998888888888885

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=51.45  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=30.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      ++||.|..|++.|.....|..|+++|.++++|.|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             SCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            6789999999999999999999999999999887

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.9e-12  Score=50.55  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=31.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      ++||.|.+|++.|...+.|..|+++|+++++|.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A           10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            6789999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=5.4e-13  Score=53.55  Aligned_cols=42  Identities=12%  Similarity=0.131  Sum_probs=35.6

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366788889999999999999999999999875   788888876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.7e-13  Score=54.03  Aligned_cols=42  Identities=14%  Similarity=0.275  Sum_probs=35.6

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            467788889999999999999999999999875   788888876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=5.5e-13  Score=53.51  Aligned_cols=42  Identities=17%  Similarity=0.199  Sum_probs=36.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|..|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            367788899999999999999999999999875   788988876

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.26  E-value=6.8e-12  Score=60.38  Aligned_cols=46  Identities=26%  Similarity=0.475  Sum_probs=43.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |+.||+.|.....|..|+++|  ++||.|..|++.|.....|..|+..
T Consensus        77 C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~  122 (129)
T 2wbt_A           77 CPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCK  122 (129)
T ss_dssp             CTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHH
Confidence            789999999999999999998  8899999999999999999999874

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=9.1e-13  Score=52.89  Aligned_cols=41  Identities=12%  Similarity=0.165  Sum_probs=34.3

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      |+++|.++++|.|..|++.|.....|..|+..   ++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56678888899999999999999999888875   678888876

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.3e-12  Score=51.93  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=30.5

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      ++||.|..|++.|.....|..|+++|+++++|.|
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A           10 SKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            6788999999999999999999999999999887

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.24  E-value=7.1e-12  Score=46.87  Aligned_cols=32  Identities=28%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCCccCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQTFDLK   81 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~   81 (86)
                      +||.|.+|++.|...+.|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            57999999999999999999999999999885

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.23  E-value=2.2e-12  Score=52.20  Aligned_cols=39  Identities=26%  Similarity=0.457  Sum_probs=29.5

Q ss_pred             HhCCCceecccccccCCChHHHhhhhhC---Ccceecccccc
Q psy4084          21 FHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIK   59 (86)
Q Consensus        21 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~   59 (86)
                      +.++++|.|..|++.|.....|..|+..   ++||.|.+|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            4566778888888888888888888765   67788887764

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=4.6e-13  Score=59.21  Aligned_cols=64  Identities=20%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             HHHhhHHHHhCCCceecccccccCCChHHHhhhhhC--CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          13 VIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS--DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        13 ~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      .|..|++++.+++++.|..|+..|. ...|..|+..  ++|+.|+.|++.|.. ..|..|++++.+++
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGRNVLV-KDLKTHPEVCGREG   69 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEECSSSCCEEET-TGGGTHHHHBTTBS
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHHhHcCCCceEcccCCCcCcH-HHHHHHHHHccCCc
Confidence            4667888899999999999999995 8889999843  799999999998874 88999999987654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.21  E-value=2.4e-11  Score=46.98  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKS   82 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c   82 (86)
                      ++||.|..|++.|...+.|..|+++|.++++|.+
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            5789999999999999999999999999999865

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.5e-12  Score=51.09  Aligned_cols=41  Identities=17%  Similarity=0.258  Sum_probs=35.7

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            467788999999999999999999999999876   68888864

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.2e-12  Score=51.76  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=34.9

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366778889999999999999999999998875   678888753

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.19  E-value=1.9e-12  Score=53.67  Aligned_cols=48  Identities=17%  Similarity=0.211  Sum_probs=42.2

Q ss_pred             hhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccce
Q psy4084           5 MGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQF   52 (86)
Q Consensus         5 ~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~   52 (86)
                      ++.|.....|..|+++|+++++|.|..|++.|.....|..|+..   ++||
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            46778888899999999999999999999999999999999875   4554

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.19  E-value=4.1e-12  Score=49.92  Aligned_cols=39  Identities=18%  Similarity=0.309  Sum_probs=32.4

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      |+++|+++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            45678889999999999999999999999875   6777764

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=1.2e-11  Score=49.33  Aligned_cols=39  Identities=15%  Similarity=0.293  Sum_probs=28.0

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC---Ccceeccccc
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCI   58 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~   58 (86)
                      .|+++++|.|..|++.|.....|..|+..   +++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            35667777777777777777777777764   6677777765

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.6e-12  Score=51.09  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=35.7

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467788999999999999999999999999886   68888864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.9e-12  Score=50.96  Aligned_cols=41  Identities=17%  Similarity=0.271  Sum_probs=35.6

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467788999999999999999999999999876   68888864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.8e-12  Score=50.95  Aligned_cols=41  Identities=15%  Similarity=0.240  Sum_probs=35.6

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            467788999999999999999999999999875   67888864

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.18  E-value=4.3e-11  Score=51.73  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=32.5

Q ss_pred             Ccceeccc--ccccccCHHHHHHHH-HhCCCCccCCCCc
Q psy4084          49 DRQFACHM--CIKVFPSQDKLRMHM-LSGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~--C~~~~~~~~~l~~h~-~~~~~~~~~~c~~   84 (86)
                      ++||.|.+  |+++|...++|..|+ ++|++++|+-|..
T Consensus        25 EKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           25 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            89999975  999999999999998 6899999998753

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=5.7e-12  Score=50.48  Aligned_cols=41  Identities=15%  Similarity=0.277  Sum_probs=35.5

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|.++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467788999999999999999999999999876   68888864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.7e-12  Score=50.68  Aligned_cols=41  Identities=17%  Similarity=0.344  Sum_probs=35.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467788999999999999999999999999876   67888864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.1e-12  Score=50.89  Aligned_cols=41  Identities=17%  Similarity=0.269  Sum_probs=35.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            467788999999999999999999999999876   67888763

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.7e-12  Score=50.73  Aligned_cols=41  Identities=17%  Similarity=0.279  Sum_probs=35.5

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            477788999999999999999999999999875   67888763

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=5.4e-12  Score=50.54  Aligned_cols=41  Identities=22%  Similarity=0.311  Sum_probs=35.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467788999999999999999999999999876   67888863

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=5.2e-12  Score=50.57  Aligned_cols=41  Identities=15%  Similarity=0.249  Sum_probs=35.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467788899999999999999999999999876   67888863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5.1e-12  Score=50.14  Aligned_cols=40  Identities=20%  Similarity=0.309  Sum_probs=35.0

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            477889999999999999999999999999886   6778774

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.16  E-value=3.6e-12  Score=51.11  Aligned_cols=41  Identities=17%  Similarity=0.258  Sum_probs=34.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467788889999999999999999999999875   67888763

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.8e-12  Score=50.97  Aligned_cols=41  Identities=15%  Similarity=0.336  Sum_probs=34.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            467788889999999999999999999999875   67888763

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5.7e-12  Score=49.95  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            467788999999999999999999999999876   6788774

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5.9e-12  Score=50.42  Aligned_cols=41  Identities=20%  Similarity=0.318  Sum_probs=35.1

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            467788999999999999999999999999876   67888763

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5.6e-12  Score=50.47  Aligned_cols=41  Identities=15%  Similarity=0.255  Sum_probs=35.5

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467788999999999999999999999999876   67888863

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=5.6e-12  Score=50.48  Aligned_cols=41  Identities=15%  Similarity=0.315  Sum_probs=35.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467788999999999999999999999999876   67888763

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=5e-12  Score=50.66  Aligned_cols=41  Identities=20%  Similarity=0.269  Sum_probs=34.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            367788889999999999999999999999875   67888763

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=4.5e-12  Score=50.78  Aligned_cols=41  Identities=15%  Similarity=0.348  Sum_probs=34.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467788889999999999999999999999875   67888763

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=8.2e-12  Score=49.98  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=34.1

Q ss_pred             HHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          18 IRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        18 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +++|+++++|.|..|++.|.....|..|+..   ++||.|..|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4567888999999999999999999999876   688888876

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=8e-12  Score=50.08  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      |+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            56788999999999999999999999999876   67888863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=4.9e-12  Score=50.63  Aligned_cols=41  Identities=15%  Similarity=0.259  Sum_probs=34.0

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|.++++|.|..|++.|.....|..|+..   ++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467788888999999999999999999988875   67888763

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=6e-12  Score=49.42  Aligned_cols=38  Identities=16%  Similarity=0.343  Sum_probs=32.7

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceec
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC   54 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C   54 (86)
                      |+++|+++++|.|..|++.|.....|..|+..   ++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            66788999999999999999999999999875   567765

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=7.3e-12  Score=49.15  Aligned_cols=38  Identities=13%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceec
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC   54 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C   54 (86)
                      |+++|.+++||.|..|++.|.....|..|+..   ++||.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            45678888999999999999999999988875   667766

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=6.6e-12  Score=50.30  Aligned_cols=41  Identities=17%  Similarity=0.253  Sum_probs=34.6

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            367788899999999999999999999999875   67888763

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.1e-11  Score=48.76  Aligned_cols=40  Identities=15%  Similarity=0.311  Sum_probs=32.3

Q ss_pred             HHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          18 IRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        18 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      +++|.++++|.|..|++.|.....|..|+..   ++||.|+.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3567788888888888888888888888875   678888776

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.7e-12  Score=50.75  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=34.1

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      +|+++|++++||.|..|++.|.....|..|+..   ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            467788899999999999999999999999875   6788776

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.7e-12  Score=50.74  Aligned_cols=40  Identities=15%  Similarity=0.296  Sum_probs=34.1

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      +|+++|+++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            467788899999999999999999999999875   6788876

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=7.6e-12  Score=50.12  Aligned_cols=41  Identities=17%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHM   56 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~   56 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            366778888999999999999999999988875   67888763

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=6.6e-12  Score=49.76  Aligned_cols=40  Identities=15%  Similarity=0.348  Sum_probs=33.8

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            467788899999999999999999999999875   6777764

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=8.8e-12  Score=49.86  Aligned_cols=40  Identities=15%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            467788999999999999999999999999876   6788876

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=6.6e-12  Score=49.82  Aligned_cols=40  Identities=18%  Similarity=0.274  Sum_probs=34.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      .|+++|.+++||.|..|++.|.....|..|+..   ++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            467788999999999999999999999999875   6777763

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=9.6e-12  Score=49.80  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=34.1

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      .|+++|.++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            467788899999999999999999999999875   7788876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=7e-12  Score=50.20  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=34.8

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            467788999999999999999999999999875   7888875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=9.6e-12  Score=49.33  Aligned_cols=40  Identities=15%  Similarity=0.285  Sum_probs=34.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      .|+++|.++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            467788999999999999999999999999876   6777763

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.8e-11  Score=49.00  Aligned_cols=39  Identities=15%  Similarity=0.344  Sum_probs=34.1

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      |+++|+++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            56678899999999999999999999999876   6788876

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.3e-11  Score=48.50  Aligned_cols=38  Identities=13%  Similarity=0.316  Sum_probs=32.4

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceec
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC   54 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C   54 (86)
                      |+++|.+++||.|..|++.|.....|..|+..   ++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            56778899999999999999999999999875   566655

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.09  E-value=1.6e-10  Score=43.37  Aligned_cols=31  Identities=26%  Similarity=0.507  Sum_probs=27.9

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCcc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFD   79 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~   79 (86)
                      +++|.|..|++.|...+.|..|+++|+++++
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            5 SSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5789999999999999999999999988764

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.1e-11  Score=48.62  Aligned_cols=38  Identities=18%  Similarity=0.336  Sum_probs=31.4

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceec
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC   54 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C   54 (86)
                      |+++|++++||.|..|++.|.....|..|+..   ++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            56678889999999999999999999988865   667765

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.07  E-value=1.6e-11  Score=48.11  Aligned_cols=38  Identities=18%  Similarity=0.298  Sum_probs=31.0

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceec
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC   54 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C   54 (86)
                      |+++|+++++|.|..|++.|.....|..|+..   ++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            55678888899999999999999999888875   567765

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.06  E-value=2.8e-11  Score=51.48  Aligned_cols=35  Identities=20%  Similarity=0.457  Sum_probs=32.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      ++||.|+.|++.|.....|.   ++|.++++|.|..|+
T Consensus        12 ~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~   46 (62)
T 1vd4_A           12 RASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCH   46 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSC
T ss_pred             CCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCC
Confidence            78999999999999988876   789999999999996

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.05  E-value=2.3e-10  Score=42.96  Aligned_cols=31  Identities=23%  Similarity=0.612  Sum_probs=27.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCcc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFD   79 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~   79 (86)
                      ++||.|..|++.|.....|..|+++|+++++
T Consensus         5 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            5 KRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5789999999999999999999999987764

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.3e-11  Score=48.92  Aligned_cols=39  Identities=15%  Similarity=0.189  Sum_probs=33.2

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceec
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC   54 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C   54 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            467788899999999999999999999999875   677776

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.5e-10  Score=45.58  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=24.9

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      +|+++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            45667777777777777777777777654   5666664

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=99.05  E-value=3.2e-10  Score=40.90  Aligned_cols=30  Identities=13%  Similarity=0.289  Sum_probs=26.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ++||.|..|++.|.....|..|+++|.+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            468999999999999999999999998753

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.4e-12  Score=56.94  Aligned_cols=50  Identities=14%  Similarity=0.132  Sum_probs=44.3

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecccc
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      |+.||+.|.....|..       +++|.|..|++.|.....|..|+..   +++|.|+.|
T Consensus        21 C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           21 CSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            7889999998888776       7899999999999999999999876   688999876

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.9e-11  Score=47.55  Aligned_cols=39  Identities=15%  Similarity=0.205  Sum_probs=33.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceec
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC   54 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C   54 (86)
                      .|+++|+++++|.|..|++.|.....|..|+..   ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            467788999999999999999999999999875   567654

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=5.4e-11  Score=47.88  Aligned_cols=41  Identities=22%  Similarity=0.210  Sum_probs=34.0

Q ss_pred             hHHHHhCCCceecc--cccccCCChHHHhhhhhC---Ccceecccc
Q psy4084          17 HIRTFHSDRQFACH--MCIKVFPSQDKLRMHMLS---DRQFACHMC   57 (86)
Q Consensus        17 h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~---~~~~~C~~C   57 (86)
                      |.++|+++++|.|.  .|++.|.....|..|+..   ++||.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34567888999998  899999999999999876   678888876

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.9e-10  Score=43.76  Aligned_cols=31  Identities=19%  Similarity=0.550  Sum_probs=27.2

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCcc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFD   79 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~   79 (86)
                      ++||.|..|++.|.....|..|+++|+++++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            7 GRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            6789999999999999999999999887764

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=2e-10  Score=45.83  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=28.3

Q ss_pred             HHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          18 IRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        18 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      ++.|+++++|.|..|++.|.....|..|+..   ++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            3456777888888888888888888888764   6677765

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=3e-10  Score=43.80  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=26.3

Q ss_pred             Ccceeccc--ccccccCHHHHHHHHHhCCCC
Q psy4084          49 DRQFACHM--CIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ++||.|++  |++.|...+.|..|+++|+++
T Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            7 GILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            78999986  999999999999999999764

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=3.5e-10  Score=44.70  Aligned_cols=39  Identities=15%  Similarity=0.143  Sum_probs=31.1

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      |+++|.++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            55677888888888888888888888888765   6777763

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.99  E-value=7e-12  Score=46.55  Aligned_cols=31  Identities=32%  Similarity=0.547  Sum_probs=28.3

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCCccC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQTFDL   80 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~   80 (86)
                      +||.|..|++.|...+.|..|+++|+++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4789999999999999999999999998886

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=8.1e-11  Score=46.81  Aligned_cols=38  Identities=18%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             HHHHhCCCceecccccccCCChHHHhhhhhC---Ccceecc
Q psy4084          18 IRTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACH   55 (86)
Q Consensus        18 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~   55 (86)
                      .++|+++++|.|..|++.|.....|..|+..   ++||.|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            3467888899999999999999999999875   6788775

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=7.7e-10  Score=41.76  Aligned_cols=30  Identities=23%  Similarity=0.425  Sum_probs=26.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ++||.|..|++.|.....|..|+++|++++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            678999999999999999999999987653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=6e-10  Score=42.07  Aligned_cols=30  Identities=23%  Similarity=0.493  Sum_probs=26.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ++||.|..|++.|...+.|..|+++|++++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            678999999999999999999999987653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.97  E-value=7e-10  Score=39.21  Aligned_cols=27  Identities=15%  Similarity=0.416  Sum_probs=24.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      ++||.|..|++.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468999999999999999999998874

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.97  E-value=3.3e-10  Score=40.67  Aligned_cols=28  Identities=36%  Similarity=0.609  Sum_probs=25.3

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      +||.|+.|++.|...+.|..|+++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5789999999999999999999998765

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.97  E-value=3.2e-10  Score=43.21  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=18.7

Q ss_pred             CcceecccccccccCHHHHHHHH
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHM   71 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~   71 (86)
                      ++||.|.+|++.|...++|..|+
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH
T ss_pred             ccCeECCCCCCccCCHhHccCcC
Confidence            67888888888888888888887

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.97  E-value=5.3e-10  Score=40.04  Aligned_cols=28  Identities=32%  Similarity=0.726  Sum_probs=25.3

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4789999999999999999999998765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.96  E-value=8e-10  Score=39.33  Aligned_cols=28  Identities=21%  Similarity=0.465  Sum_probs=24.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      ++||.|..|++.|...+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4689999999999999999999998863

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=6.6e-11  Score=53.72  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=24.6

Q ss_pred             HHHhCCCceecccccccCCChHHHhhhhhC---Ccceeccccc
Q psy4084          19 RTFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCI   58 (86)
Q Consensus        19 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~   58 (86)
                      ++|+++++|.|..|++.|.....|..|+..   ++||.|..+.
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~   60 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE   60 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh
Confidence            345666666666666666666666666654   4566665543

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.96  E-value=5.6e-10  Score=39.55  Aligned_cols=27  Identities=22%  Similarity=0.468  Sum_probs=23.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      ++||.|..|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999998873

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=6.7e-10  Score=41.88  Aligned_cols=30  Identities=13%  Similarity=0.308  Sum_probs=26.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ++||.|..|++.|.....|..|+++|.+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            678999999999999999999999987653

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.95  E-value=9e-10  Score=40.18  Aligned_cols=29  Identities=31%  Similarity=0.502  Sum_probs=25.8

Q ss_pred             cceecc--cccccccCHHHHHHHHHhCCCCc
Q psy4084          50 RQFACH--MCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        50 ~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      +||.|.  .|++.|...+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            478997  89999999999999999998753

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=5.2e-10  Score=42.77  Aligned_cols=32  Identities=28%  Similarity=0.540  Sum_probs=29.0

Q ss_pred             Ccceecc--cccccccCHHHHHHHHHhCCCCccC
Q psy4084          49 DRQFACH--MCIKVFPSQDKLRMHMLSGLQTFDL   80 (86)
Q Consensus        49 ~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~   80 (86)
                      ++||.|.  .|++.|...+.|..|+++|.++++|
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5789999  5999999999999999999988876

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=8.6e-10  Score=41.62  Aligned_cols=30  Identities=27%  Similarity=0.504  Sum_probs=26.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ++||.|..|++.|.....|..|+++|.+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            678999999999999999999999987653

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=3.2e-10  Score=44.10  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=28.7

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC---Ccceec
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS---DRQFAC   54 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C   54 (86)
                      +|+++++|.|..|++.|.....|..|+..   ++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            57788899999999999999999888875   567665

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=8.6e-10  Score=41.56  Aligned_cols=30  Identities=30%  Similarity=0.448  Sum_probs=26.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      +++|.|..|++.|.....|..|+++|++++
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            678999999999999999999999987653

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.92  E-value=9.3e-10  Score=40.41  Aligned_cols=30  Identities=30%  Similarity=0.473  Sum_probs=26.5

Q ss_pred             Ccceecc--cccccccCHHHHHHHHHhCCCCc
Q psy4084          49 DRQFACH--MCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        49 ~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ++||.|.  .|++.|...+.|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4689999  89999999999999999998753

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.92  E-value=9.3e-10  Score=40.87  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=24.3

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCcee
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFA   28 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~   28 (86)
                      |++||+.|...+.|..|+++|+++++|.
T Consensus         5 C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            5 CPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            7789999999999999999999888764

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.92  E-value=9.3e-10  Score=41.74  Aligned_cols=28  Identities=25%  Similarity=0.513  Sum_probs=21.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      ++||.|+.|++.|.....|..|+++|.+
T Consensus         9 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            9 IKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            5677788888888888888888877765

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.91  E-value=6.5e-10  Score=39.77  Aligned_cols=29  Identities=21%  Similarity=0.355  Sum_probs=25.6

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      +||.|..|++.|.....|..|+++|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47899999999999999999999987653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.91  E-value=7.8e-10  Score=39.83  Aligned_cols=29  Identities=14%  Similarity=0.352  Sum_probs=25.9

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ++|.|..|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            47899999999999999999999988765

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.42  E-value=1.6e-10  Score=41.58  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=25.1

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      +||.|..|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4789999999999999999999998765

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=5e-10  Score=44.64  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=33.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC----Ccceecc
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS----DRQFACH   55 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~----~~~~~C~   55 (86)
                      .|+++|.+++||.|..|++.|.....|..|+..    ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            366788899999999999999999999999875    4677775

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.88  E-value=1.6e-09  Score=38.13  Aligned_cols=26  Identities=19%  Similarity=0.465  Sum_probs=23.0

Q ss_pred             ceecccccccccCHHHHHHHHHhCCC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      ||.|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            57899999999999999999999875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.87  E-value=5.9e-10  Score=39.84  Aligned_cols=28  Identities=21%  Similarity=0.477  Sum_probs=24.8

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4789999999999999999999988765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.37  E-value=2.5e-10  Score=41.26  Aligned_cols=29  Identities=17%  Similarity=0.397  Sum_probs=25.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            36899999999999999999999998765

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.2e-09  Score=41.43  Aligned_cols=29  Identities=21%  Similarity=0.383  Sum_probs=24.4

Q ss_pred             CcceecccccccccCH-HHHHHHHHhCCCC
Q psy4084          49 DRQFACHMCIKVFPSQ-DKLRMHMLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~-~~l~~h~~~~~~~   77 (86)
                      ++||.|..|++.|... +.|..|+++|.++
T Consensus         7 ~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            7 GRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            5788899999999888 8999998888664

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.84  E-value=3.8e-09  Score=42.52  Aligned_cols=30  Identities=30%  Similarity=0.569  Sum_probs=22.9

Q ss_pred             CcceecccccccccCHHHHHHHHH-hCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHML-SGLQTF   78 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~~   78 (86)
                      ++||.|..|++.|.....|..|++ +|.++.
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            578888888888888888888888 776543

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=3.2e-09  Score=45.67  Aligned_cols=30  Identities=30%  Similarity=0.456  Sum_probs=25.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ++||.|.+|++.|.....|..|+++|++..
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            688999999999999999999999887654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.81  E-value=1.8e-09  Score=41.48  Aligned_cols=27  Identities=30%  Similarity=0.581  Sum_probs=15.9

Q ss_pred             hCCCceecccccccCCChHHHhhhhhC
Q psy4084          22 HSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        22 ~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      +++++|.|..|++.|.....|..|+..
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~   28 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNV   28 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHH
Confidence            445566666666666666666666553

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.81  E-value=2.4e-09  Score=38.56  Aligned_cols=28  Identities=25%  Similarity=0.505  Sum_probs=24.2

Q ss_pred             cceecccccccccCHHHHHHH-HHhCCCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMH-MLSGLQT   77 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h-~~~~~~~   77 (86)
                      +||.|..|++.|...+.|..| +++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            478999999999999999999 6788765

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=5.9e-09  Score=39.55  Aligned_cols=29  Identities=14%  Similarity=0.279  Sum_probs=24.7

Q ss_pred             CcceecccccccccCHHHHHHH-HHhCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMH-MLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h-~~~~~~~   77 (86)
                      ++||.|..|++.|.....|..| ++.|.+.
T Consensus         7 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            7 GHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            6789999999999999999999 8888653

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.80  E-value=1.3e-09  Score=41.33  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=29.0

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |+++|++++||.|+.|++.|.....|..|+..
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            67789999999999999999999999999764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.80  E-value=1.6e-09  Score=41.21  Aligned_cols=32  Identities=25%  Similarity=0.525  Sum_probs=27.7

Q ss_pred             HhCCCceecccccccCCChHHHhhhhhCCcceeccc
Q psy4084          21 FHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACHM   56 (86)
Q Consensus        21 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~   56 (86)
                      +.+++||.|..|++.|...+.|..|+    ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~----py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ----AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH----HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC----CeECcC
Confidence            46899999999999999999999997    666653

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=4.5e-10  Score=50.97  Aligned_cols=35  Identities=11%  Similarity=0.152  Sum_probs=31.9

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceeccccccc
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKV   35 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~   35 (86)
                      |++|++.|.....|..|+++|++++||.|..+...
T Consensus        28 C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~~   62 (88)
T 1x6f_A           28 CKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERR   62 (88)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSCC
T ss_pred             CCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhhH
Confidence            78999999999999999999999999999876543

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.26  E-value=6.8e-10  Score=38.88  Aligned_cols=25  Identities=24%  Similarity=0.529  Sum_probs=22.1

Q ss_pred             cceecccccccccCHHHHHHHHHhC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      +||.|+.|++.|...+.|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4788999999999999999998876

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.76  E-value=4.8e-09  Score=39.82  Aligned_cols=30  Identities=30%  Similarity=0.529  Sum_probs=25.6

Q ss_pred             Ccceeccc--ccccccCHHHHHHHHHhCCCCc
Q psy4084          49 DRQFACHM--CIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        49 ~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ++||.|.+  |++.|...+.|..|+++|++++
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            67899984  9999999999999999887653

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.68  E-value=1.8e-08  Score=35.78  Aligned_cols=27  Identities=26%  Similarity=0.453  Sum_probs=23.7

Q ss_pred             cceecc--cccccccCHHHHHHHHHhCCC
Q psy4084          50 RQFACH--MCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        50 ~~~~C~--~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      ++|.|.  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            478899  999999999999999998853

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.65  E-value=1.7e-08  Score=43.63  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=25.5

Q ss_pred             HhCCCceeccc--ccccCCChHHHhhhh-hC---Ccceeccc
Q psy4084          21 FHSDRQFACHM--CIKVFPSQDKLRMHM-LS---DRQFACHM   56 (86)
Q Consensus        21 ~~~~~~~~c~~--c~~~~~~~~~l~~h~-~~---~~~~~C~~   56 (86)
                      .++++||.|..  |++.|.....|..|+ +.   ++|+.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            45677888864  888888888888886 32   67776654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=3.5e-08  Score=44.83  Aligned_cols=37  Identities=11%  Similarity=0.061  Sum_probs=32.7

Q ss_pred             cceecccccccccCHHHHHHHHHh-CCCCcc--------CCCCcCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLS-GLQTFD--------LKSKLCT   86 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~-~~~~~~--------~~c~~C~   86 (86)
                      ..+.|..|++.|.....|..|+++ |.++++        |.|..|+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~   69 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREG   69 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTT
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCC
Confidence            346799999999999999999998 888877        8999885

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.63  E-value=2.1e-08  Score=37.29  Aligned_cols=26  Identities=35%  Similarity=0.586  Sum_probs=23.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCc
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQ   26 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~   26 (86)
                      |..|++.|.....|..|++.|++++|
T Consensus        10 C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A           10 CALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            78999999999999999999998764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=2.1e-08  Score=37.81  Aligned_cols=26  Identities=31%  Similarity=0.576  Sum_probs=23.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCc
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQ   26 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~   26 (86)
                      |..|++.|.....|..|+++|++++|
T Consensus        12 C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A           12 CPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             ETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            67899999999999999999998764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.60  E-value=8.7e-10  Score=40.65  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=24.9

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCce
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQF   27 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~   27 (86)
                      |..||+.|...+.|..|+++|++++||
T Consensus         5 C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            5 CPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             SSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            789999999999999999999998876

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.58  E-value=1.4e-08  Score=40.56  Aligned_cols=30  Identities=30%  Similarity=0.621  Sum_probs=25.5

Q ss_pred             Ccceecc--cccccccCHHHHHHHHHhCCCCc
Q psy4084          49 DRQFACH--MCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        49 ~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      ++||.|.  .|++.|...+.|..|+++|++++
T Consensus        16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            6889995  69999999999999999987753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.57  E-value=3.5e-08  Score=36.70  Aligned_cols=26  Identities=15%  Similarity=0.335  Sum_probs=23.6

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCc
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQ   26 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~   26 (86)
                      |..|++.|.....|..|+++|++++|
T Consensus        10 C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A           10 CRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            78899999999999999999998764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.57  E-value=5.5e-08  Score=34.44  Aligned_cols=25  Identities=16%  Similarity=0.514  Sum_probs=22.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |+.|++.|.....|..|+++|++++
T Consensus         5 C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            5 CEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhcCCC
Confidence            7899999999999999999998753

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.54  E-value=6.4e-08  Score=34.22  Aligned_cols=25  Identities=24%  Similarity=0.558  Sum_probs=22.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |+.|++.|.....|..|+++|++++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            5 CRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCCCCCccCChhHHHHHHHHhcCCC
Confidence            7889999999999999999998763

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.54  E-value=5.8e-08  Score=34.58  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=23.3

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCc
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQ   26 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~   26 (86)
                      |..||+.|.....|..|+++|+++++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            5 CQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCCCCCccCCHHHHHHHHHHHccCCC
Confidence            78999999999999999999988753

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=3.1e-08  Score=43.52  Aligned_cols=45  Identities=16%  Similarity=0.273  Sum_probs=39.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |..|++.|. ...|..|+ .+.+++|+.|+.|++.+. ...|..|+..
T Consensus        20 C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~   64 (75)
T 2d9k_A           20 CQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEV   64 (75)
T ss_dssp             CSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHH
T ss_pred             CcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHH
Confidence            778999994 88899999 899999999999999876 4888888764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.52  E-value=4.3e-08  Score=34.79  Aligned_cols=25  Identities=20%  Similarity=0.388  Sum_probs=22.4

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |+.||+.|.....|..|+++|++++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            5 CPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCCCCchhCCHHHHHHHHHHhcCCC
Confidence            7889999999999999999998763

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.52  E-value=6.9e-08  Score=36.57  Aligned_cols=25  Identities=32%  Similarity=0.672  Sum_probs=12.0

Q ss_pred             CCCceecc--cccccCCChHHHhhhhh
Q psy4084          23 SDRQFACH--MCIKVFPSQDKLRMHML   47 (86)
Q Consensus        23 ~~~~~~c~--~c~~~~~~~~~l~~h~~   47 (86)
                      ++++|.|.  .|++.|.....|..|+.
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~   29 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKH   29 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHH
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHH
Confidence            44445555  25555555555544443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=1.5e-08  Score=38.36  Aligned_cols=29  Identities=17%  Similarity=0.295  Sum_probs=25.4

Q ss_pred             HHHhCCCceecccccccCCChHHHhhh-hh
Q psy4084          19 RTFHSDRQFACHMCIKVFPSQDKLRMH-ML   47 (86)
Q Consensus        19 ~~~~~~~~~~c~~c~~~~~~~~~l~~h-~~   47 (86)
                      ++|++++||.|..|++.|.....|..| +.
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   31 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQ   31 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHH
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHH
Confidence            357889999999999999999999998 54

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=1e-07  Score=35.56  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=22.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |++|++.|.....|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A           12 CDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             cCcCCCCcCchHHHHHHHHHhcCCC
Confidence            7899999999999999999998764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.47  E-value=7.7e-08  Score=33.96  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=22.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |+.|++.|.....|..|+++|++++
T Consensus         5 C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            5 CPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhccCC
Confidence            7889999999999999999998763

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.46  E-value=8.9e-08  Score=38.38  Aligned_cols=29  Identities=28%  Similarity=0.552  Sum_probs=26.3

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhh-C
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHML-S   48 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~   48 (86)
                      +|+++++|.|..|++.|.....|..|+. .
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~   30 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHS   30 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHS
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhh
Confidence            4788999999999999999999999988 5

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.46  E-value=8.7e-08  Score=34.09  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=22.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |..||+.|.....|..|++.|++++
T Consensus         6 C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            6 CDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhccCC
Confidence            7889999999999999999988753

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=1.4e-07  Score=35.18  Aligned_cols=25  Identities=12%  Similarity=0.240  Sum_probs=22.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |+.|++.|.....|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A           12 CPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHccCCC
Confidence            7899999999999999999998763

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.46  E-value=5.8e-08  Score=33.87  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHS   23 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~   23 (86)
                      |..||+.|.....|..|+++|++
T Consensus         4 C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            4 CGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CCCCCCcCCCHHHHHHHHHHcCC
Confidence            78899999999999999988875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.3e-07  Score=35.31  Aligned_cols=25  Identities=16%  Similarity=0.363  Sum_probs=22.6

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |+.|++.|.....|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A           12 CEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCceeCCHHHHHHHHHHhCCCC
Confidence            7899999999999999999998763

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.7e-07  Score=35.90  Aligned_cols=24  Identities=8%  Similarity=0.157  Sum_probs=21.5

Q ss_pred             Ccc--hhhhccChHHHHhhHHHHhCC
Q psy4084           1 MSE--CMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         1 c~~--C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      |+.  |+++|...+.|..|+++|+++
T Consensus        12 C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A           12 CPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            554  999999999999999999875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.79  E-value=2.9e-08  Score=35.34  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=21.8

Q ss_pred             CcchhhhccChHHHHhhHHHHhCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      |..||+.|.....|..|+++|+++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            5 CVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            788999999999999999998875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.41  E-value=1.1e-07  Score=34.32  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=20.7

Q ss_pred             chhhhccChHHHHhhHHHHhCCC
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      .||+.|...+.|..|+++|++++
T Consensus         9 ~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            9 YCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             TCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCcccCCHhHHHHHHHHhcCCC
Confidence            89999999999999999998763

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.1e-07  Score=35.58  Aligned_cols=29  Identities=28%  Similarity=0.504  Sum_probs=25.0

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      .|.+++||.|..|++.|.....|..|+..
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            46778899999999999999999998764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1e-07  Score=35.64  Aligned_cols=29  Identities=28%  Similarity=0.500  Sum_probs=24.7

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      +|.+++||+|..|++.|.....|..|+..
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            46788899999999999999999888763

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.9e-07  Score=35.07  Aligned_cols=25  Identities=16%  Similarity=0.242  Sum_probs=22.6

Q ss_pred             CcchhhhccCh-HHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEY-QVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~-~~l~~h~~~~~~~~   25 (86)
                      |+.|++.|... ..|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A           12 CPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCChhhccCHHHHHHHHHhcCCCC
Confidence            78999999999 99999999998763

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.35  E-value=2.3e-07  Score=33.63  Aligned_cols=25  Identities=12%  Similarity=0.301  Sum_probs=21.9

Q ss_pred             Cc--chhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MS--ECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~--~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |.  .||+.|.....|..|+++|++++
T Consensus         6 C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            6 CDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            55  79999999999999999998763

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.70  E-value=5.3e-08  Score=34.76  Aligned_cols=24  Identities=17%  Similarity=0.527  Sum_probs=21.6

Q ss_pred             CcchhhhccChHHHHhhHHHHhCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      |+.||+.|.....|..|+++|+++
T Consensus         6 C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            6 CIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            788999999999999999998875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.31  E-value=2.6e-07  Score=32.16  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.4

Q ss_pred             CcchhhhccChHHHHhhHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFH   22 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~   22 (86)
                      |+.||+.|.....|..|+++|+
T Consensus         6 C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            6 CSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CSSSSCEESSHHHHHHHHHHCC
T ss_pred             CCCcChhhCCHHHHHHHHHHcc
Confidence            7889999999999999998764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.31  E-value=1.6e-07  Score=32.94  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             CcchhhhccChHHHHhhHHHHhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHS   23 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~   23 (86)
                      |+.|++.|.....|..|+++|++
T Consensus         6 C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            6 CSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCC
Confidence            78899999999999999888754

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.26  E-value=6.5e-07  Score=33.65  Aligned_cols=25  Identities=20%  Similarity=0.392  Sum_probs=21.9

Q ss_pred             Cc--chhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MS--ECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~--~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |.  .||+.|...+.|..|+++|++++
T Consensus        11 C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A           11 CHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            55  59999999999999999998863

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.22  E-value=7.9e-07  Score=30.95  Aligned_cols=24  Identities=25%  Similarity=0.569  Sum_probs=20.6

Q ss_pred             CCceecccccccCCChHHHhhhhh
Q psy4084          24 DRQFACHMCIKVFPSQDKLRMHML   47 (86)
Q Consensus        24 ~~~~~c~~c~~~~~~~~~l~~h~~   47 (86)
                      ++||.|..|++.|.....|..|+.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHH
Confidence            468899999999999999988875

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.22  E-value=2.7e-07  Score=32.85  Aligned_cols=24  Identities=17%  Similarity=0.376  Sum_probs=20.3

Q ss_pred             CcchhhhccChHHHHhh-HHHHhCC
Q psy4084           1 MSECMGKFTEYQVIRKH-IRTFHSD   24 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h-~~~~~~~   24 (86)
                      |+.||+.|.....|..| +++|+++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            5 CGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcccCcccCChHHHHHHHHHHccCC
Confidence            78899999999999999 6777765

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.22  E-value=9.9e-07  Score=37.84  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=23.4

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |.+|++.|.....|..|+++|+++.
T Consensus        16 C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A           16 CGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCCccCCHHHHHhhhhhhCCCc
Confidence            7899999999999999999999864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.51  E-value=1.8e-07  Score=32.33  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.0

Q ss_pred             CcchhhhccChHHHHhhHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFH   22 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~   22 (86)
                      |+.||+.|.....|..|+++|+
T Consensus         5 C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            5 CERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            7789999999999999988763

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.12  E-value=9.2e-07  Score=31.04  Aligned_cols=21  Identities=14%  Similarity=0.445  Sum_probs=18.7

Q ss_pred             chhhhccChHHHHhhHHHHhC
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHS   23 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~   23 (86)
                      .||+.|...+.|..|+++|++
T Consensus         9 ~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            9 NCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             TTCEEESSHHHHHHHHGGGTC
T ss_pred             cCcCccCCHHHHHHHHHHhCC
Confidence            899999999999999988864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.02  E-value=3.5e-07  Score=36.37  Aligned_cols=33  Identities=24%  Similarity=0.491  Sum_probs=27.6

Q ss_pred             hhHHHHhCCCceecc--cccccCCChHHHhhhhhC
Q psy4084          16 KHIRTFHSDRQFACH--MCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~   48 (86)
                      .|...|.+++||.|.  .|++.|.....|..|+..
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            344568999999995  799999999999999764

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.97  E-value=1.3e-05  Score=34.04  Aligned_cols=53  Identities=15%  Similarity=0.184  Sum_probs=31.3

Q ss_pred             chhhhccChHHHHhhHH-HHhCCCceecccccccCCChHHHhhhhhCCcceecc--cccccccCHHHHHHHHHhC
Q psy4084           3 ECMGKFTEYQVIRKHIR-TFHSDRQFACHMCIKVFPSQDKLRMHMLSDRQFACH--MCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~-~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~--~C~~~~~~~~~l~~h~~~~   74 (86)
                      .|++.|.+...|..|+. .|.+.++-                   ....+|.|.  .|++.+.....|..|++..
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~-------------------~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFK-------------------HPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCC-------------------CSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccC-------------------CCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            46667777777777763 45544310                   001256665  4777777777777777653

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.55  E-value=2.6e-05  Score=37.34  Aligned_cols=27  Identities=19%  Similarity=0.454  Sum_probs=13.8

Q ss_pred             HhCCCceecccccccCCChHHHhhhhh
Q psy4084          21 FHSDRQFACHMCIKVFPSQDKLRMHML   47 (86)
Q Consensus        21 ~~~~~~~~c~~c~~~~~~~~~l~~h~~   47 (86)
                      |+|+++|.|..|++.|.....|..|++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHh
Confidence            344455555555555555555555544

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.52  E-value=8.9e-05  Score=29.34  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=17.7

Q ss_pred             cceecccccccccCHHHHHHHHHh
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      -++.|+.|+..|.....|+.||+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            356777788888777788777763

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.00027  Score=29.94  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=23.7

Q ss_pred             eccc--ccccccCHHHHHHHHH-hCCCCc------cCCCC
Q psy4084          53 ACHM--CIKVFPSQDKLRMHML-SGLQTF------DLKSK   83 (86)
Q Consensus        53 ~C~~--C~~~~~~~~~l~~h~~-~~~~~~------~~~c~   83 (86)
                      .|..  |++.|.+...|..|+. .|.+.+      +|.|.
T Consensus         3 ~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~   42 (64)
T 1zw8_A            3 KCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACN   42 (64)
T ss_dssp             CCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECC
T ss_pred             eEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEee
Confidence            4544  9999999999999985 676554      67776

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.29  E-value=8.6e-05  Score=35.57  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=23.3

Q ss_pred             CcceecccccccccCHHHHHHHHHh
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      +++|.|..|++.|.+...|..|+++
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CcceEcccCcchhCCHHHHHHHHhh
Confidence            6899999999999999999999874

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.93  E-value=0.00073  Score=26.75  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=21.1

Q ss_pred             CceecccccccCCChHHHhhhhh
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHML   47 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~~   47 (86)
                      .++.|+.|+..|.....|+.||.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            57899999999999999999987

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.59  E-value=0.0035  Score=30.14  Aligned_cols=69  Identities=17%  Similarity=0.269  Sum_probs=43.4

Q ss_pred             CcchhhhccChHHHHhhHH--HHhCC-Cceeccc------ccccCCChHHHhhhhh---CCcceecccccccccCHHHHH
Q psy4084           1 MSECMGKFTEYQVIRKHIR--TFHSD-RQFACHM------CIKVFPSQDKLRMHML---SDRQFACHMCIKVFPSQDKLR   68 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~--~~~~~-~~~~c~~------c~~~~~~~~~l~~h~~---~~~~~~C~~C~~~~~~~~~l~   68 (86)
                      |..|+..|.+.+.+..|..  .|... +.+....      -+..+....    +..   ....+.|..|+..|.+...+.
T Consensus        35 C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             ETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            7789999999999999983  44332 1121110      011111110    111   145688999999999999999


Q ss_pred             HHHHh
Q psy4084          69 MHMLS   73 (86)
Q Consensus        69 ~h~~~   73 (86)
                      .|...
T Consensus       111 ~H~~g  115 (127)
T 1zu1_A          111 SHYIG  115 (127)
T ss_dssp             HHHTS
T ss_pred             HHHCC
Confidence            99864

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.36  E-value=0.0052  Score=22.69  Aligned_cols=25  Identities=32%  Similarity=0.499  Sum_probs=21.1

Q ss_pred             ceecccccccccCHHHHHHHHHhCC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      .|.|+.|.+.+.+...|..|....+
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcc
Confidence            5889999999999999999987644

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.26  E-value=0.0035  Score=31.42  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=10.9

Q ss_pred             cceecccccccccCHHHHHHHHHhCCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      ++..|+.|+..+... .+..|...+.+
T Consensus       136 r~~~C~~C~~~~~~~-~l~~H~~~~~~  161 (170)
T 3hcs_A          136 RQVSCDNCAASMAFE-DKEIHDQNCPL  161 (170)
T ss_dssp             CEEECTTTCCEEEGG-GHHHHHTTCCC
T ss_pred             CCeECCCCCCccCHH-HHHhHHHhCcC
Confidence            334444454443322 33444444433

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.21  E-value=0.0046  Score=30.99  Aligned_cols=61  Identities=16%  Similarity=0.367  Sum_probs=43.6

Q ss_pred             CCceecc--cccccCCChHHHhhhhhC--CcceecccccccccCHHHHHHHHHhCCCCccCCCCcCC
Q psy4084          24 DRQFACH--MCIKVFPSQDKLRMHMLS--DRQFACHMCIKVFPSQDKLRMHMLSGLQTFDLKSKLCT   86 (86)
Q Consensus        24 ~~~~~c~--~c~~~~~~~~~l~~h~~~--~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~C~   86 (86)
                      .-...|+  .|+..+. ...+..|...  -++..|+.|+..+ ....|..|+......+.-.|..|+
T Consensus        80 ~l~v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~  144 (170)
T 3hcs_A           80 SLMVKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCA  144 (170)
T ss_dssp             TSEEECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTC
T ss_pred             hcccCCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCC
Confidence            3456674  4654433 4566778765  5678999999987 555689999888888888888874

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.11  E-value=0.0098  Score=28.58  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             CCceecccccccCCChHHHhhhhhC
Q psy4084          24 DRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        24 ~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      .+++.|..|...|.+...+..|..+
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~g   54 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQS   54 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHC
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCc
Confidence            3678999999999999999888864

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=94.25  E-value=0.027  Score=25.30  Aligned_cols=28  Identities=25%  Similarity=0.420  Sum_probs=21.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCCcc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQTFD   79 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~   79 (86)
                      .....|.+||+.|..   |.+|+.++++..+
T Consensus        19 ~d~iiClecGK~fK~---LkRHL~~~hgltp   46 (87)
T 2jsp_A           19 DDHIVCLECGGSFKS---LKRHLTTHHSMTP   46 (87)
T ss_dssp             SSCEECTBTCCEESB---HHHHHHHTTCSCH
T ss_pred             CCceEecccchhhHH---HHHHHHHccCCCH
Confidence            345789999999885   6699999766554

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=93.92  E-value=0.083  Score=18.54  Aligned_cols=22  Identities=32%  Similarity=0.779  Sum_probs=16.7

Q ss_pred             ceecccccccccCHHHHHHHHH
Q psy4084          51 QFACHMCIKVFPSQDKLRMHML   72 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~   72 (86)
                      .+.|+.|....+....+..|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            3678888888888888877754

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=93.75  E-value=0.12  Score=21.08  Aligned_cols=46  Identities=20%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             ecccccccCCChHHHhhhhhCCcceecccc-cccccCHHHHHHHHHh
Q psy4084          28 ACHMCIKVFPSQDKLRMHMLSDRQFACHMC-IKVFPSQDKLRMHMLS   73 (86)
Q Consensus        28 ~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C-~~~~~~~~~l~~h~~~   73 (86)
                      +|.+|.........|..|...-..-+|++| ...-++.+.|+.|.+.
T Consensus         5 vC~~C~~ECET~kEl~~H~~sCp~gqCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHHHHTTTBCTTTCCBCCSSHHHHHHHHTT
T ss_pred             hhhHHHhhhhhHHHHHHHhccCCCCCCCcccCcCCcCHHHHHHHHHH
Confidence            577777777788888888876233467777 3445788899998764

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=92.82  E-value=0.11  Score=24.20  Aligned_cols=11  Identities=36%  Similarity=0.670  Sum_probs=5.7

Q ss_pred             ceecccccccC
Q psy4084          26 QFACHMCIKVF   36 (86)
Q Consensus        26 ~~~c~~c~~~~   36 (86)
                      |+.|..||..|
T Consensus        67 p~~C~~CG~~F   77 (105)
T 2gmg_A           67 PAQCRKCGFVF   77 (105)
T ss_dssp             CCBBTTTCCBC
T ss_pred             CcChhhCcCee
Confidence            44555555554

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=92.64  E-value=0.17  Score=18.25  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=18.3

Q ss_pred             ecccccccccCHHHHHHHHHhCC
Q psy4084          53 ACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        53 ~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      -|..|.+.+..-.+|..|++-.+
T Consensus        11 hcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            57888888888888888887644

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=91.63  E-value=0.11  Score=27.06  Aligned_cols=9  Identities=22%  Similarity=0.726  Sum_probs=4.5

Q ss_pred             eeccccccc
Q psy4084          52 FACHMCIKV   60 (86)
Q Consensus        52 ~~C~~C~~~   60 (86)
                      |.|..||..
T Consensus       172 ~~C~~CG~i  180 (202)
T 1yuz_A          172 HLCPICGYI  180 (202)
T ss_dssp             EECSSSCCE
T ss_pred             EEECCCCCE
Confidence            445555544

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=91.33  E-value=0.086  Score=27.03  Aligned_cols=37  Identities=19%  Similarity=0.337  Sum_probs=27.8

Q ss_pred             ChHHHhhhhhC----C------cceecccccccccCHHHHHHHHHhCC
Q psy4084          38 SQDKLRMHMLS----D------RQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        38 ~~~~l~~h~~~----~------~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      ....|..|++.    .      +=|+|..||+ +....+|..|++.|-
T Consensus       131 LGgrlieHlK~~~~~GqDyvFWQFYKCe~CgK-YvDId~~~~Hlk~Hg  177 (226)
T 2czr_A          131 LGAALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHG  177 (226)
T ss_dssp             CHHHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             hhHHHHHHHHhccccCcceEEEEEEehhhcCc-eecHHHHHHHHHHcC
Confidence            34667777764    1      3478999997 568889999999874

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=91.29  E-value=0.15  Score=26.68  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=22.6

Q ss_pred             CcceecccccccccC-HHHHHHHHHhC
Q psy4084          49 DRQFACHMCIKVFPS-QDKLRMHMLSG   74 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~-~~~l~~h~~~~   74 (86)
                      ..|+.|..|+..|.+ -..|..|+..|
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            458899999999986 99999998765

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=91.27  E-value=0.32  Score=23.27  Aligned_cols=26  Identities=19%  Similarity=0.382  Sum_probs=14.5

Q ss_pred             cceecccccccccCHHHHHHHHHhCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      .+..|..|...|.....+..|++..|
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H~k~~H   39 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSS
T ss_pred             CceeEecCCCcccCHHHHHHHHHHhc
Confidence            34555555555555555555555543

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.37  E-value=0.37  Score=17.88  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=13.6

Q ss_pred             ceecccccccccCHHHHHHHHHh
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      .+.|..|+-.|.....+..|.+-
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhhee
Confidence            34566666666666666666543

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=89.79  E-value=0.06  Score=21.91  Aligned_cols=19  Identities=32%  Similarity=0.420  Sum_probs=12.0

Q ss_pred             CcchhhhccChHHHHhhHH
Q psy4084           1 MSECMGKFTEYQVIRKHIR   19 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~   19 (86)
                      |..|+..|..+..+..|+-
T Consensus        16 C~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           16 CTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             CTTTTCCCCSSSCHHHHHT
T ss_pred             ccccCcccccccchhhhhc
Confidence            5666666666666666654

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=89.57  E-value=0.16  Score=22.52  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=22.2

Q ss_pred             eecccccccCCChHHHhhhhhC-------------------Ccceeccccccccc
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLS-------------------DRQFACHMCIKVFP   62 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~-------------------~~~~~C~~C~~~~~   62 (86)
                      -.|+.||....... |...|..                   +-.|+|+.||..|.
T Consensus         9 ~~~PlCG~~L~W~e-LIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFy   62 (95)
T 2k5c_A            9 AKCPICGSPLKWEE-LIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFY   62 (95)
T ss_dssp             EECSSSCCEECHHH-HHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEE
T ss_pred             ccCCcCCCccCHHH-HHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHh
Confidence            46888887665433 3333322                   34689999988764

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.52  E-value=0.32  Score=21.30  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=18.6

Q ss_pred             ceeccccccccc-------CHHHHHHHHHhCC
Q psy4084          51 QFACHMCIKVFP-------SQDKLRMHMLSGL   75 (86)
Q Consensus        51 ~~~C~~C~~~~~-------~~~~l~~h~~~~~   75 (86)
                      ...|..|++.+.       .-+.|.+|++..|
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H   59 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMH   59 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTT
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHC
Confidence            467888888876       3568899988654

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=89.31  E-value=0.16  Score=20.02  Aligned_cols=30  Identities=20%  Similarity=0.408  Sum_probs=17.0

Q ss_pred             ceecccccccCCChHHHhhhhhCCcceeccccccc
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKV   60 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~   60 (86)
                      .|.|..||..|....-     ..-....|+.||..
T Consensus         3 iY~C~rCg~~fs~~el-----~~lP~IrCpyCGyr   32 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQL-----KVLPGVRCPYCGYK   32 (48)
T ss_dssp             --CCCCTTTTCCCCCS-----CCCSSSCCTTTCCS
T ss_pred             EEEeeccCCCccHHHH-----hhCCCcccCccCcE
Confidence            4678888887765331     11123578888864

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=87.27  E-value=0.41  Score=22.15  Aligned_cols=44  Identities=20%  Similarity=0.398  Sum_probs=31.9

Q ss_pred             ceecccccccCCChHHHhhhhhCCcceecc---cccccccCHHHHHHHHHh
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLSDRQFACH---MCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~---~C~~~~~~~~~l~~h~~~   73 (86)
                      .-.|+.|...+......   .. +.-|.|.   .|.++|.+...|+.|+..
T Consensus        37 ~k~Cp~C~~~V~rVe~~---~~-~~if~C~~~~~CkrtyLs~rdlqaHI~~   83 (101)
T 3vk6_A           37 DKMCPGCSDPVQRIEQC---TR-GSLFMCSIVQGCKRTYLSQRDLQAHINH   83 (101)
T ss_dssp             CCBCTTTCCBCSEEEEE---EG-GGCCCCCCCCCCCCCCSSHHHHHHHHHH
T ss_pred             CCCCcCcCCeeeeeEEe---cc-CCEEECCCCCCHHHHhcCHHHHHHHHHH
Confidence            34688887665544331   11 5567887   499999999999999986

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=87.01  E-value=0.21  Score=22.03  Aligned_cols=40  Identities=20%  Similarity=0.374  Sum_probs=24.8

Q ss_pred             CCCceecccccccCCChHHHhhhhhC--C-cceecccccccccC
Q psy4084          23 SDRQFACHMCIKVFPSQDKLRMHMLS--D-RQFACHMCIKVFPS   63 (86)
Q Consensus        23 ~~~~~~c~~c~~~~~~~~~l~~h~~~--~-~~~~C~~C~~~~~~   63 (86)
                      .+..|.|..|+..+..+. +..|...  . ..|.|..|+..|..
T Consensus         7 ~MV~F~C~~Cgd~lKK~k-v~~H~~~Cr~~~~~SCIDC~~~F~~   49 (79)
T 1wjv_A            7 GMVFFTCNACGESVKKIQ-VEKHVSNCRNCECLSCIDCGKDFWG   49 (79)
T ss_dssp             CCCEEEESSSCCEEETTH-HHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred             ceeEEEcCCCCCeeeccc-chhHHhhCCCCCcEEecccCCeeCC
Confidence            445677888876665433 4555443  1 35778888888764

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=86.70  E-value=0.48  Score=23.99  Aligned_cols=11  Identities=18%  Similarity=0.555  Sum_probs=5.9

Q ss_pred             ceecccccccC
Q psy4084          26 QFACHMCIKVF   36 (86)
Q Consensus        26 ~~~c~~c~~~~   36 (86)
                      .|.|..||..+
T Consensus       138 ~~~C~~CG~i~  148 (170)
T 3pwf_A          138 VYICPICGYTA  148 (170)
T ss_dssp             EEECTTTCCEE
T ss_pred             eeEeCCCCCee
Confidence            35566665544

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=86.65  E-value=0.58  Score=22.11  Aligned_cols=11  Identities=36%  Similarity=0.945  Sum_probs=5.7

Q ss_pred             eeccccccccc
Q psy4084          52 FACHMCIKVFP   62 (86)
Q Consensus        52 ~~C~~C~~~~~   62 (86)
                      +.|..||..|.
T Consensus        74 ~~C~~CG~~~e   84 (119)
T 2kdx_A           74 LECKDCSHVFK   84 (119)
T ss_dssp             EECSSSSCEEC
T ss_pred             EEcCCCCCEEe
Confidence            45555555543

>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...

Probab=86.45  E-value=0.4  Score=19.54  Aligned_cols=36  Identities=17%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             CceecccccccCCChHHHhhh-hh--C---C--cceeccccccc
Q psy4084          25 RQFACHMCIKVFPSQDKLRMH-ML--S---D--RQFACHMCIKV   60 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h-~~--~---~--~~~~C~~C~~~   60 (86)
                      +.|+|..|+..+.....-... +.  +   +  --|.|+.|+..
T Consensus         2 ~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~   45 (54)
T 4rxn_A            2 KKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG   45 (54)
T ss_dssp             CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             CceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence            458889998776543211111 11  1   2  23788888754

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=86.16  E-value=0.2  Score=21.47  Aligned_cols=46  Identities=20%  Similarity=0.451  Sum_probs=30.5

Q ss_pred             CCceec-ccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHH
Q psy4084          24 DRQFAC-HMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHM   71 (86)
Q Consensus        24 ~~~~~c-~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~   71 (86)
                      ..+..| ..|+..+. ...+..|...   .++..|..|+..+.. ..|..|.
T Consensus        14 ~~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~   63 (76)
T 2yuc_A           14 FNVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHE   63 (76)
T ss_dssp             CSCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTT
T ss_pred             CcccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHH
Confidence            445667 46776543 4556778763   567889999988754 4566665

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=85.97  E-value=0.14  Score=22.79  Aligned_cols=31  Identities=19%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             CceecccccccCCChHHHhhhhhCCcceeccccccccc
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVFP   62 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~~   62 (86)
                      ..|.|+.|+........       ...+.|+.|+..|.
T Consensus        26 ~~y~Cp~CG~~~v~r~a-------tGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQG-------TGIWQCSYCDYKFT   56 (83)
T ss_dssp             SCEECSSSCCEEEEEEE-------TTEEEETTTCCEEE
T ss_pred             ccCcCCCCCCcceeccC-------CCeEECCCCCCEec
Confidence            46899999863211111       23589999998864

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=84.47  E-value=0.37  Score=18.24  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=13.5

Q ss_pred             cceecccccccccCHHHHHHHHH
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHML   72 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~   72 (86)
                      ..+.|+.|+..+.. .....|.-
T Consensus         8 ~~~~C~~C~~~i~~-~~~~EH~D   29 (39)
T 2i5o_A            8 DQVPCEKCGSLVPV-WDMPEHMD   29 (39)
T ss_dssp             CEEECTTTCCEEEG-GGHHHHHH
T ss_pred             CCcccccccCcCCc-ccccchhh
Confidence            45678888877665 33455543

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=80.19  E-value=1.5  Score=18.87  Aligned_cols=26  Identities=15%  Similarity=0.494  Sum_probs=14.2

Q ss_pred             ceecccccccCCChHHHhhhhhCCcceecccccc
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIK   59 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~   59 (86)
                      .|.|..|+..|....        .-+..|+.||.
T Consensus        28 ~Y~C~~CG~~~e~~~--------~d~irCp~CG~   53 (70)
T 1twf_L           28 KYICAECSSKLSLSR--------TDAVRCKDCGH   53 (70)
T ss_dssp             CEECSSSCCEECCCT--------TSTTCCSSSCC
T ss_pred             EEECCCCCCcceeCC--------CCCccCCCCCc
Confidence            466777776654431        12335777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	86
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.74
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.7
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.51
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.47
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.44
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.43
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.41
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.37
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.35
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.33
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.33
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.31
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.29
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.29
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.26
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.25
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.21
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.21
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.2
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.19
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.18
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.17
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.16
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.16
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.14
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.09
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.08
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.06
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.06
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.97
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.95
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.93
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.91
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.89
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.87
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.84
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.8
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.79
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.58
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.52
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.51
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.49
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.46
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.43
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.4
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.37
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.34
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.33
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.26
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	98.24
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.23
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.22
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.13
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.07
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.0
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.98
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.96
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.94
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.93
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.89
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.78
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.74
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.72
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.69
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.67
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.67
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.54
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.5
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.48
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.47
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	97.46
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.28
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.19
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.18
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.13
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.07
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.79
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.48
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.35
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.21
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.06
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.91
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.85
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	95.69
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.48
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.16
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	95.06
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.04
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	95.03
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.99
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	94.69
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	93.39
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	92.07
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	92.05
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	91.11
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	90.92
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	90.08
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	89.19
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	88.39
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	87.39
d2dsxa1	52	Rubredoxin {Desulfovibrio gigas [TaxId: 879]}	87.31
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	86.81
d2dkta1	74	RING finger and CHY zinc finger domain-containing	85.7
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	84.56
d1brfa_	53	Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2	83.46
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	81.69
d1dx8a_	70	Rubredoxin {Guillardia theta [TaxId: 55529]}	80.49
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	80.48
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	80.15

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-18  Score=71.71  Aligned_cols=50  Identities=30%  Similarity=0.557  Sum_probs=31.3

Q ss_pred             CCceecccccccCCChHHHhhhhhC---CcceecccccccccCHHHHHHHHHhC
Q psy4084          24 DRQFACHMCIKVFPSQDKLRMHMLS---DRQFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        24 ~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      ++||.|. ||+.|.....|..|+..   ++||.|.+||+.|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            3566663 66666666666666654   56666666666666666666666554

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1e-17  Score=68.66  Aligned_cols=47  Identities=26%  Similarity=0.420  Sum_probs=44.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      | .||++|.....|..|+++|++++||.|..|++.|.....|..|++.
T Consensus         6 C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           6 C-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             C-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             C-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            7 4999999999999999999999999999999999999999999863

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5e-17  Score=61.97  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=33.7

Q ss_pred             CcceecccccccccCHHHHHHHHH-hCCCCccCCCCc
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHML-SGLQTFDLKSKL   84 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~~~~~c~~   84 (86)
                      ++||.|.+||+.|...++|..|++ +|++++||+|++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            689999999999999999999986 699999999974

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.51  E-value=9.6e-15  Score=52.21  Aligned_cols=29  Identities=31%  Similarity=0.663  Sum_probs=27.5

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      +||.|++|++.|...+.|.+|+++|++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1e-14  Score=51.61  Aligned_cols=28  Identities=25%  Similarity=0.706  Sum_probs=26.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      ++||.|++|++.|...++|..|+++|++
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5899999999999999999999999864

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.4e-14  Score=51.08  Aligned_cols=29  Identities=31%  Similarity=0.539  Sum_probs=27.2

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCCc
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      +||.|.+|++.|...+.|..|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.9e-14  Score=52.98  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=30.6

Q ss_pred             eeccc--ccccccCHHHHHHHHHhCCCCccCCCCc
Q psy4084          52 FACHM--CIKVFPSQDKLRMHMLSGLQTFDLKSKL   84 (86)
Q Consensus        52 ~~C~~--C~~~~~~~~~l~~h~~~~~~~~~~~c~~   84 (86)
                      |.|++  |++.|...+.|.+|+++|++++||.|++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67876  9999999999999999999999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7e-14  Score=53.06  Aligned_cols=29  Identities=24%  Similarity=0.464  Sum_probs=25.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ++||.|++||+.|...++|..|+++|+++
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            78899999999999999999999998875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-13  Score=49.71  Aligned_cols=29  Identities=21%  Similarity=0.385  Sum_probs=25.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ++||.|.+||+.|...+.|..|+++|+++
T Consensus         5 ekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           5 EKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            78899999999999999999999998874

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-13  Score=52.46  Aligned_cols=30  Identities=23%  Similarity=0.511  Sum_probs=19.1

Q ss_pred             CcchhhhccChHHHHhhHH-HHhCCCceecc
Q psy4084           1 MSECMGKFTEYQVIRKHIR-TFHSDRQFACH   30 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~-~~~~~~~~~c~   30 (86)
                      |.+||++|...++|..|++ +|++++||+|.
T Consensus         8 C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           8 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             CSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            5566666666666666654 46666666664

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=4.9e-13  Score=49.57  Aligned_cols=29  Identities=24%  Similarity=0.626  Sum_probs=26.2

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ++||.|.+|++.|...++|..|+++|++.
T Consensus         5 ekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           5 KRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CccccCCCCCCcccChHHHHHHccccCCc
Confidence            78999999999999999999999998765

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.5e-13  Score=50.03  Aligned_cols=28  Identities=18%  Similarity=0.555  Sum_probs=26.7

Q ss_pred             chhhhccChHHHHhhHHHHhCCCceecc
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHSDRQFACH   30 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~~~~~~c~   30 (86)
                      .||++|...+.|++|+++|++++||+|.
T Consensus         8 ~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           8 ACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            4999999999999999999999999996

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.3e-13  Score=47.03  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=23.7

Q ss_pred             cceecccccccccCHHHHHHHHHhCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      +||+|.+||++|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999873

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1e-12  Score=47.07  Aligned_cols=28  Identities=21%  Similarity=0.529  Sum_probs=26.1

Q ss_pred             cceeccc--ccccccCHHHHHHHHHhCCCC
Q psy4084          50 RQFACHM--CIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        50 ~~~~C~~--C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      +||.|++  |++.|...+.|..|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899988  999999999999999999875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.3e-13  Score=50.86  Aligned_cols=27  Identities=26%  Similarity=0.551  Sum_probs=16.1

Q ss_pred             CcceecccccccccCHHHHHHHHHhCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      ++||.|.+|++.|...++|..|+++|.
T Consensus         9 eKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           9 IKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             ccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            455556666666666666666666553

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.3e-12  Score=48.19  Aligned_cols=29  Identities=28%  Similarity=0.559  Sum_probs=24.6

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ++||.|.+|++.|...+.|..|+++|+++
T Consensus         6 ekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           6 EKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            68888888888888888899998888754

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-12  Score=46.87  Aligned_cols=28  Identities=29%  Similarity=0.487  Sum_probs=25.7

Q ss_pred             cceeccc--ccccccCHHHHHHHHHhCCCC
Q psy4084          50 RQFACHM--CIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        50 ~~~~C~~--C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      +||.|++  |++.|...+.|..|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899987  999999999999999999875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.5e-12  Score=46.02  Aligned_cols=29  Identities=31%  Similarity=0.502  Sum_probs=26.3

Q ss_pred             cceecc--cccccccCHHHHHHHHHhCCCCc
Q psy4084          50 RQFACH--MCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        50 ~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      +||.|+  .|++.|...++|..|+++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589995  59999999999999999999875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.21  E-value=3.1e-12  Score=45.53  Aligned_cols=25  Identities=16%  Similarity=0.514  Sum_probs=23.8

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |++||++|...+.|..|+++|+|++
T Consensus         5 C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           5 CEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CCCCCCCCCCchHcccccCcccCCC
Confidence            8899999999999999999999985

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=4.3e-12  Score=47.72  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             hHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084          17 HIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        17 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |.|+|++++||.|..|++.|...+.|..|++.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhc
Confidence            67899999999999999999999999999864

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.1e-12  Score=49.69  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=30.4

Q ss_pred             hhHHHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084          16 KHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        16 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      +|+++|++++||.|..|++.|...+.|..|++.
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCcc
Confidence            477899999999999999999999999999874

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=8.4e-13  Score=52.12  Aligned_cols=37  Identities=24%  Similarity=0.538  Sum_probs=30.6

Q ss_pred             HhhhhhC--Ccceeccc--ccccccCHHHHHHHHHhCCCCc
Q psy4084          42 LRMHMLS--DRQFACHM--CIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        42 l~~h~~~--~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      +..|+..  ++||.|.+  |++.|...++|..|+++|++++
T Consensus         7 l~~h~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchhhccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            3444433  89999987  9999999999999999999875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.9e-12  Score=47.53  Aligned_cols=30  Identities=33%  Similarity=0.675  Sum_probs=27.8

Q ss_pred             HHHhCCCceecccccccCCChHHHhhhhhC
Q psy4084          19 RTFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        19 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |+|+|++||+|..|++.|...+.|..|++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcc
Confidence            578999999999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.3e-12  Score=47.69  Aligned_cols=27  Identities=22%  Similarity=0.694  Sum_probs=20.4

Q ss_pred             CcceecccccccccCHHHHHHHHHhCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      ++||.|++|++.|...++|..|++.++
T Consensus         6 ekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           6 EKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CCCEeCCCCcccccchHHHHHHccccc
Confidence            677888888888888888888876533

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.8e-12  Score=44.27  Aligned_cols=25  Identities=28%  Similarity=0.584  Sum_probs=23.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |++||++|.+.+.|..|+++|++++
T Consensus         5 C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           5 CPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCcCCCeecchHHhhhhcCccCCcC
Confidence            8899999999999999999999975

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.3e-11  Score=46.03  Aligned_cols=29  Identities=28%  Similarity=0.762  Sum_probs=27.1

Q ss_pred             HHHhCCCceecccccccCCChHHHhhhhh
Q psy4084          19 RTFHSDRQFACHMCIKVFPSQDKLRMHML   47 (86)
Q Consensus        19 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~   47 (86)
                      |+|+|++||.|+.|++.|...+.|..|+.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcc
Confidence            46899999999999999999999999975

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=1.8e-11  Score=44.35  Aligned_cols=29  Identities=31%  Similarity=0.541  Sum_probs=26.2

Q ss_pred             Ccceeccc--ccccccCHHHHHHHHHhCCCC
Q psy4084          49 DRQFACHM--CIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ++||.|.+  |++.|...++|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            58999988  999999999999999999764

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.5e-11  Score=44.28  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=25.9

Q ss_pred             HHhCCCceecccccccCCChHHHhhhhhC
Q psy4084          20 TFHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        20 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      +|++++||+|..|++.|...+.|..|++.
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccc
Confidence            47899999999999999999999999864

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=3.4e-11  Score=42.32  Aligned_cols=23  Identities=30%  Similarity=0.545  Sum_probs=22.0

Q ss_pred             CcchhhhccChHHHHhhHHHHhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHS   23 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~   23 (86)
                      |++|+++|..+++|..|+++|+|
T Consensus         6 C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           6 CRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCCCcCEecccccccccCCCccC
Confidence            88999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.9e-11  Score=44.32  Aligned_cols=28  Identities=21%  Similarity=0.609  Sum_probs=25.7

Q ss_pred             HhCCCceecccccccCCChHHHhhhhhC
Q psy4084          21 FHSDRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        21 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      |+|++||+|.+|++.|.....|..|++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccc
Confidence            6899999999999999999999999875

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=2.2e-11  Score=43.12  Aligned_cols=27  Identities=26%  Similarity=0.530  Sum_probs=24.3

Q ss_pred             cceeccc--ccccccCHHHHHHHHHhCCC
Q psy4084          50 RQFACHM--CIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        50 ~~~~C~~--C~~~~~~~~~l~~h~~~~~~   76 (86)
                      +||.|.+  |++.|...+.|.+|+++|++
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899977  99999999999999999864

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.1e-11  Score=42.01  Aligned_cols=26  Identities=31%  Similarity=0.732  Sum_probs=23.2

Q ss_pred             cceeccc--ccccccCHHHHHHHHHhCC
Q psy4084          50 RQFACHM--CIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        50 ~~~~C~~--C~~~~~~~~~l~~h~~~~~   75 (86)
                      +||.|.+  |++.|...++|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5889987  9999999999999999874

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=5e-10  Score=38.07  Aligned_cols=27  Identities=30%  Similarity=0.656  Sum_probs=24.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      ++||.|..||+.|+......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999885

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.5e-10  Score=39.20  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             CcchhhhccChHHHHhhHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFH   22 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~   22 (86)
                      |.+||++|...+.|..|+++|+
T Consensus         5 C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           5 CLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcCeeccCcccccCccCCC
Confidence            7899999999999999999985

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.5e-10  Score=36.82  Aligned_cols=26  Identities=35%  Similarity=0.644  Sum_probs=23.3

Q ss_pred             ceecccccccccCHHHHHHHHHhCCC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      |.+|+.|++.|++...|..|++.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45799999999999999999999874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5e-10  Score=39.88  Aligned_cols=24  Identities=13%  Similarity=0.491  Sum_probs=21.8

Q ss_pred             Ccc--hhhhccChHHHHhhHHHHhCC
Q psy4084           1 MSE--CMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         1 c~~--C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      |+.  ||++|...+.|..|+++|+|+
T Consensus         5 C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           5 CTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCCCCCCceECChhHhhhhcCcCcCC
Confidence            555  999999999999999999985

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.6e-10  Score=39.59  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             chhhhccChHHHHhhHHHHhCC
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      .||++|...++|..|+++|+|+
T Consensus         9 gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           9 GCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             TCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCCceECcHHHcCccccccCCC
Confidence            3999999999999999999986

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.4e-09  Score=36.09  Aligned_cols=29  Identities=24%  Similarity=0.527  Sum_probs=26.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ++||+|..|.+.....+.|..|++.|+++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            57999999999999999999999999874

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=6.1e-10  Score=36.71  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=21.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHS   23 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~   23 (86)
                      |+.|++.|+.+..|+.|+|.|+|
T Consensus         4 c~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           4 CEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             BTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             cchhhhHhcchhHHHHHhhccCC
Confidence            78899999999999999999875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.1e-09  Score=39.35  Aligned_cols=24  Identities=29%  Similarity=0.551  Sum_probs=22.2

Q ss_pred             cchhhhccChHHHHhhHHHHhCCC
Q psy4084           2 SECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         2 ~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      +.||++|...++|..|+++|++++
T Consensus         8 ~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           8 SYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             TTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCCcCcCChhHhhhhcCcccccC
Confidence            469999999999999999999975

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.5e-09  Score=37.24  Aligned_cols=32  Identities=31%  Similarity=0.453  Sum_probs=29.0

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCCccCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQTFDLK   81 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~   81 (86)
                      +...|..||+.|...-.|++|..+|.+++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            45689999999999999999999999999984

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.9e-09  Score=37.94  Aligned_cols=27  Identities=11%  Similarity=0.316  Sum_probs=21.8

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCCce
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDRQF   27 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~~~   27 (86)
                      |..||++|..-..|.+|.-+|.+++||
T Consensus         8 ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           8 CEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             ETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            667888888888888888888888876

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=9.5e-09  Score=34.45  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=21.8

Q ss_pred             CcchhhhccChHHHHhhHHHHhCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      |.+||++|...+.|++|+-.|+++
T Consensus         5 c~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           5 CAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             HHHHhHHHHHHHHHHHHhhcccCC
Confidence            789999999999999999988874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=1.1e-08  Score=36.00  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=19.5

Q ss_pred             chhhhccChHHHHhhHHHHhC
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHS   23 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~   23 (86)
                      .||++|...++|..|+++|+|
T Consensus         9 gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           9 SCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             TCCCEESSHHHHHHHTHHHHT
T ss_pred             CCCcEECchhHhhhhcCccCC
Confidence            499999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=8.5e-09  Score=40.39  Aligned_cols=25  Identities=36%  Similarity=0.470  Sum_probs=22.5

Q ss_pred             Ccc--hhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSE--CMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~--C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |..  |+++|...++|..|+++|+|++
T Consensus        21 C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          21 CLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCcCCCCccccCchHHHhhcccccCCC
Confidence            555  9999999999999999999975

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=6.2e-08  Score=32.91  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=23.3

Q ss_pred             cceecccccccccCHHHHHHHHHhCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      +||+|..|....+..++|..|+++.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            58999999999999999999999744

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.2e-07  Score=32.53  Aligned_cols=27  Identities=22%  Similarity=0.604  Sum_probs=22.7

Q ss_pred             cceeccc--ccccccCHHHHHHHHHhCCC
Q psy4084          50 RQFACHM--CIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        50 ~~~~C~~--C~~~~~~~~~l~~h~~~~~~   76 (86)
                      +||.|..  |++.+...++|+.|++++++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5788876  89999999999999998664

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.7e-07  Score=31.27  Aligned_cols=26  Identities=15%  Similarity=0.359  Sum_probs=24.3

Q ss_pred             cceecccccccccCHHHHHHHHHhCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      +|++|..|..+....++|+.|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68999999999999999999999984

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.4e-07  Score=31.51  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=22.7

Q ss_pred             eecccccccccCHHHHHHHHHhCCCC
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ..|.+||++|...+.|.+|...|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46889999999999999999998764

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.6e-07  Score=31.20  Aligned_cols=27  Identities=15%  Similarity=0.264  Sum_probs=24.4

Q ss_pred             eecccccccccCHHHHHHHHHhCCCCc
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      |.|++||....-.+-|..|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            679999999999999999999998764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.3e-07  Score=32.42  Aligned_cols=28  Identities=21%  Similarity=0.536  Sum_probs=21.8

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      ++||.|+.|+..|.....+.-|.++|.+
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            4678888888888888888888877754

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=9e-08  Score=34.34  Aligned_cols=22  Identities=14%  Similarity=0.357  Sum_probs=19.5

Q ss_pred             chhhhccChHHHHhhHHHHhCC
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      .||++|...++|.+|+++|+..
T Consensus        10 gC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_          10 GCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             TCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCeeCCHHHHHHHhhhccCC
Confidence            3999999999999999999763

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.5e-08  Score=34.34  Aligned_cols=20  Identities=30%  Similarity=0.514  Sum_probs=17.9

Q ss_pred             chhhhccChHHHHhhHHHHh
Q psy4084           3 ECMGKFTEYQVIRKHIRTFH   22 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~   22 (86)
                      .||++|...++|++|+++|+
T Consensus         9 gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           9 GCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             TCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCcCCCHHHHHHHHhhcc
Confidence            39999999999999999885

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.4e-07  Score=31.28  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=22.8

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |+.||..-...+-|+.|+++|++++
T Consensus         4 C~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           4 CEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccCcccCCHHHHHHHHHHhcCCC
Confidence            7899999999999999999999863

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=5.2e-07  Score=29.71  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=23.1

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |+.|.+.|.++..|+-|-|.|+|++
T Consensus         3 cp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             CcchHHHHHHhHhhhhccccccCCC
Confidence            7899999999999999999999874

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.1e-06  Score=29.65  Aligned_cols=24  Identities=29%  Similarity=0.577  Sum_probs=21.1

Q ss_pred             ceecccccccccCHHHHHHHHHhC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      ||.|..|+..|...++|..||++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            688999999999999999999863

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.23  E-value=5.5e-07  Score=30.30  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=20.9

Q ss_pred             cceeccc--ccccccCHHHHHHHHHhC
Q psy4084          50 RQFACHM--CIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        50 ~~~~C~~--C~~~~~~~~~l~~h~~~~   74 (86)
                      .||.|+.  |++.|+..+.|.+|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5788875  899999999999998875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.22  E-value=1.5e-06  Score=31.83  Aligned_cols=30  Identities=27%  Similarity=0.473  Sum_probs=24.3

Q ss_pred             cceecccccccccCHHHHHHHHHhCCCCcc
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQTFD   79 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~   79 (86)
                      +.|.|..|++.|.+.-.|--|++.|..++.
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchHH
Confidence            568888999999988889889888876543

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=1.2e-06  Score=28.84  Aligned_cols=26  Identities=27%  Similarity=0.347  Sum_probs=23.4

Q ss_pred             ecccccccccCHHHHHHHHHhCCCCc
Q psy4084          53 ACHMCIKVFPSQDKLRMHMLSGLQTF   78 (86)
Q Consensus        53 ~C~~C~~~~~~~~~l~~h~~~~~~~~   78 (86)
                      +|+.|.+.|.+.-.|..|-+.|++++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            68999999999999999999998864

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=6.3e-07  Score=30.70  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=22.2

Q ss_pred             CcchhhhccChHHHHhhHHHHhCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      |+.|++.|..+..+..|.++|.|.
T Consensus         6 cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           6 CPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             ETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             cchHHHHhhccccceEeeecccCc
Confidence            789999999999999999999874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.5e-06  Score=32.10  Aligned_cols=25  Identities=24%  Similarity=0.615  Sum_probs=15.7

Q ss_pred             CCCceecccccccCCChHHHhhhhh
Q psy4084          23 SDRQFACHMCIKVFPSQDKLRMHML   47 (86)
Q Consensus        23 ~~~~~~c~~c~~~~~~~~~l~~h~~   47 (86)
                      |-+||+|..|++.|-..+++.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            4566666666666666666666654

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.1e-06  Score=29.02  Aligned_cols=27  Identities=26%  Similarity=0.349  Sum_probs=23.2

Q ss_pred             cceecccccccccCHHHHHHHHHhCCC
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      +||+|..|.......++|..|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            589999999999999999999987544

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=3.3e-06  Score=28.48  Aligned_cols=24  Identities=29%  Similarity=0.726  Sum_probs=21.2

Q ss_pred             CCceecccccccCCChHHHhhhhh
Q psy4084          24 DRQFACHMCIKVFPSQDKLRMHML   47 (86)
Q Consensus        24 ~~~~~c~~c~~~~~~~~~l~~h~~   47 (86)
                      ++||.|.+||+.|.......+|..
T Consensus         1 EkPf~C~~CgrkFArsderkRH~k   24 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTK   24 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHG
T ss_pred             CCCcccchhhhhhhcchhhhhhhh
Confidence            589999999999999988888865

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=5.5e-06  Score=27.82  Aligned_cols=29  Identities=31%  Similarity=0.708  Sum_probs=25.3

Q ss_pred             CcceecccccccccCHHHHHHHHHhCCCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      ++.|.|..|...|...-.|+.||-+|+++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45688999999999999999999998764

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.94  E-value=4.3e-06  Score=27.03  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             eecccccccccCHHHHHHHHHhCC
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      |+|..|.+.|...+.|.+|.+.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            578899999999999999998874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=5.1e-06  Score=30.63  Aligned_cols=24  Identities=25%  Similarity=0.635  Sum_probs=21.8

Q ss_pred             CcceecccccccccCHHHHHHHHH
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHML   72 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~   72 (86)
                      -+||.|..|++.|.+..++.+|..
T Consensus         3 iKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           3 IKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCceeccchhhhhhhHHHHHHhhh
Confidence            379999999999999999999864

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.89  E-value=8e-06  Score=28.14  Aligned_cols=24  Identities=25%  Similarity=0.553  Sum_probs=21.2

Q ss_pred             ceecccccccccCHHHHHHHHHhC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      ||.|..|++.|+...-|.+|...-
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKl   24 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKI   24 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTT
T ss_pred             CcccccccchhhHHHHHHHHHHHH
Confidence            789999999999999999998763

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.78  E-value=6.7e-06  Score=30.03  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=21.6

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |..|++.|.+...|-.|++.|..++
T Consensus         8 C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           8 CSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             CTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCCCCCccCCcccccchHhhhcchH
Confidence            7889999999999999999887654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.74  E-value=5.9e-06  Score=27.84  Aligned_cols=28  Identities=32%  Similarity=0.545  Sum_probs=22.6

Q ss_pred             cceeccc--ccccccCHHHHHHHHHhCCCC
Q psy4084          50 RQFACHM--CIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        50 ~~~~C~~--C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      +||.|.+  |.+.|.+...|.+|..+|+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4778865  899999999999998887653

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3.1e-05  Score=25.73  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=22.8

Q ss_pred             ceecccccccccCHHHHHHHHHhCCC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGLQ   76 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~~   76 (86)
                      |.+|+.|.+...+...|+.|.+.|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            56899999999999999999998864

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=2.6e-05  Score=25.72  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             ceecccccccccCHHHHHHHHHhC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      ||+|..||+-+....+|..|....
T Consensus         1 pf~c~kcgkcyfrkenllehearn   24 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEARN   24 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCccccchhhhhhHhHHHHHHHHh
Confidence            678889999999999998887653

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=8.6e-06  Score=28.06  Aligned_cols=27  Identities=19%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             cceeccc--ccccccCHHHHHHHH-HhCCC
Q psy4084          50 RQFACHM--CIKVFPSQDKLRMHM-LSGLQ   76 (86)
Q Consensus        50 ~~~~C~~--C~~~~~~~~~l~~h~-~~~~~   76 (86)
                      +||.|..  |.++|...+....|. ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            5788876  888888888888886 66643

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=2.8e-05  Score=25.06  Aligned_cols=23  Identities=26%  Similarity=0.706  Sum_probs=20.2

Q ss_pred             ceecccccccccCHHHHHHHHHh
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      ||+|..|...|.....|..||..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            78999999999999999998754

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=4e-05  Score=25.65  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=21.7

Q ss_pred             CcchhhhccChHHHHhhHHHHhCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      |+.|...|..+-.|+.|+-+|+|+
T Consensus         7 cs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           7 CSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             eHHHHHHHHHHHhheeeeecccCC
Confidence            788999999999999999999875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=4.3e-05  Score=25.63  Aligned_cols=23  Identities=30%  Similarity=0.618  Sum_probs=19.6

Q ss_pred             ceecccccccCCChHHHhhhhhC
Q psy4084          26 QFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        26 ~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      ||.|..|+-.|..+.+|..||.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            67888888888899999888875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.48  E-value=2.2e-05  Score=25.33  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=18.2

Q ss_pred             CcchhhhccChHHHHhhHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFH   22 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~   22 (86)
                      |..|.+.|..++.|.+|++.|.
T Consensus         3 cglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           3 CGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccchHHHHHHHHHHHHHHHhhc
Confidence            6678889999999999988763

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=5.4e-05  Score=27.44  Aligned_cols=27  Identities=30%  Similarity=0.556  Sum_probs=21.8

Q ss_pred             Ccceec--ccccccccCHHHHHHHHHhCC
Q psy4084          49 DRQFAC--HMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        49 ~~~~~C--~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      ++||.|  +-|+..|.+...|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            678888  458888999998988887763

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00012  Score=24.15  Aligned_cols=25  Identities=24%  Similarity=0.534  Sum_probs=21.7

Q ss_pred             ceecccccccccCHHHHHHHHHhCC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      .|+|+.|+-..++.+.|+.|++.-+
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4789999999999999999998743

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=7.1e-05  Score=25.47  Aligned_cols=21  Identities=33%  Similarity=0.787  Sum_probs=17.5

Q ss_pred             chhhhccChHHHHhhHHHHhC
Q psy4084           3 ECMGKFTEYQVIRKHIRTFHS   23 (86)
Q Consensus         3 ~C~~~~~~~~~l~~h~~~~~~   23 (86)
                      .|++.+...++|+.|+++++|
T Consensus         9 gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           9 GCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             TTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCcccCCHHHHHHHHHhhCC
Confidence            488999999999999987654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00012  Score=27.83  Aligned_cols=24  Identities=33%  Similarity=0.674  Sum_probs=21.2

Q ss_pred             ceecccccccccCHHHHHHHHHhC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      .|.|..|++.|.....|+.|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            478999999999999999998875

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00015  Score=25.68  Aligned_cols=20  Identities=15%  Similarity=0.356  Sum_probs=17.5

Q ss_pred             hhhccChHHHHhhHHHHhCC
Q psy4084           5 MGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         5 ~~~~~~~~~l~~h~~~~~~~   24 (86)
                      ++.|.....|..|+|.|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            46788999999999999985

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.13  E-value=0.0003  Score=22.64  Aligned_cols=22  Identities=27%  Similarity=0.768  Sum_probs=19.0

Q ss_pred             eecccccccccCHHHHHHHHHh
Q psy4084          52 FACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        52 ~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      |.|+.|-+.|.+..++..|.+.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6789999999999999888775

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00012  Score=24.41  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=19.8

Q ss_pred             CcchhhhccChHHHHhhHHHHhCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      |..|..+-.+.+.|.-|++.|+|+
T Consensus         6 cqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           6 CQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             eeecccccCCchheEEeeecccCc
Confidence            566777788889999999999874

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00033  Score=26.59  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=18.7

Q ss_pred             CcchhhhccChHHHHhhHHHHh
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFH   22 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~   22 (86)
                      |..||+.|.....|+.|...|-
T Consensus         9 CG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           9 CGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ccccccccCCHHHHhHhHHhcC
Confidence            6789999999999999987764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00024  Score=25.13  Aligned_cols=21  Identities=24%  Similarity=0.230  Sum_probs=17.4

Q ss_pred             ccccccCHHHHHHHHHhCCCC
Q psy4084          57 CIKVFPSQDKLRMHMLSGLQT   77 (86)
Q Consensus        57 C~~~~~~~~~l~~h~~~~~~~   77 (86)
                      =++.|.....|..||++|+++
T Consensus        13 ~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          13 ELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCcchhHHHHHHHHhhcCCC
Confidence            356788999999999999874

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.48  E-value=0.0021  Score=24.24  Aligned_cols=26  Identities=23%  Similarity=0.512  Sum_probs=23.2

Q ss_pred             CcceecccccccccCHHHHHHHHHhC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      ++|..|+.|+.......+|++|+..-
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~   47 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELR   47 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999998763

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.35  E-value=0.002  Score=21.82  Aligned_cols=23  Identities=9%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             cchhhhccChHHHHhhHHHHhCC
Q psy4084           2 SECMGKFTEYQVIRKHIRTFHSD   24 (86)
Q Consensus         2 ~~C~~~~~~~~~l~~h~~~~~~~   24 (86)
                      +.|+..|.....|..|+-.|+|+
T Consensus         9 ~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           9 ADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             GGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CCcchhhccchhhhHHhhhhcCC
Confidence            56889999999999999999985

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.005  Score=21.44  Aligned_cols=25  Identities=24%  Similarity=0.497  Sum_probs=20.0

Q ss_pred             ceecccccccccCHHHHHHHHHhCC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      .|.|..|++.|.....+.+|...-.
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            4788889999998888888877543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0046  Score=20.38  Aligned_cols=19  Identities=26%  Similarity=0.574  Sum_probs=15.8

Q ss_pred             cccccccCHHHHHHHHHhC
Q psy4084          56 MCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        56 ~C~~~~~~~~~l~~h~~~~   74 (86)
                      -|++.|...+.++.|+-+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3888999999998888775

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.91  E-value=0.0031  Score=20.51  Aligned_cols=21  Identities=14%  Similarity=0.298  Sum_probs=17.9

Q ss_pred             cchhhhccChHHHHhhHHHHh
Q psy4084           2 SECMGKFTEYQVIRKHIRTFH   22 (86)
Q Consensus         2 ~~C~~~~~~~~~l~~h~~~~~   22 (86)
                      ..|+++|.....|+-|+-+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            358999999999999988875

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.002  Score=26.56  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=18.0

Q ss_pred             CCceecccccccCCChHHHhhhhhC
Q psy4084          24 DRQFACHMCIKVFPSQDKLRMHMLS   48 (86)
Q Consensus        24 ~~~~~c~~c~~~~~~~~~l~~h~~~   48 (86)
                      ...|.|..|++.|.+...|..|+++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCEEecccccCccCCHHHHHHHHcc
Confidence            3457777777777777777777765

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.003  Score=25.61  Aligned_cols=35  Identities=20%  Similarity=0.557  Sum_probs=16.7

Q ss_pred             CceecccccccCCChHHHhhhhhCCcceecccccc
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIK   59 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~   59 (86)
                      ..|.|+.|++.|........--...-.|.|..|+-
T Consensus        13 ~~y~Cp~C~~~ys~Lda~~L~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHT   47 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCC
T ss_pred             CceECCCCCCCcchhhHHHhcCcCCCeEEecCCCC
Confidence            34666666666655444322101133456666654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0027  Score=26.15  Aligned_cols=23  Identities=26%  Similarity=0.558  Sum_probs=20.7

Q ss_pred             ceecccccccccCHHHHHHHHHh
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~   73 (86)
                      .|.|..|++.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            47899999999999999999864

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.16  E-value=0.016  Score=20.22  Aligned_cols=27  Identities=15%  Similarity=0.586  Sum_probs=20.7

Q ss_pred             CcceecccccccccCHHHHHHHHHhCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      +..|.|..|.+.+...+++-+|.-+.+
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            346788888888888888888876643

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.06  E-value=0.007  Score=21.88  Aligned_cols=26  Identities=15%  Similarity=0.415  Sum_probs=15.4

Q ss_pred             CceecccccccCCChHHHhhhhhCCcceeccccccc
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKV   60 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~   60 (86)
                      +.|.|..||..+..          +.|-.|+.|+..
T Consensus         4 ~~~~C~vCG~i~~g----------~~P~~CPvCg~~   29 (37)
T d1nnqa2           4 KVYICPICGYTAVD----------EAPEYCPVCGAP   29 (37)
T ss_dssp             CEEECTTTCCEEES----------CCCSBCTTTCCB
T ss_pred             cEEECCCCCCEecC----------CCCCcCCCCCCc
Confidence            45677777755422          345567777643

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.017  Score=19.13  Aligned_cols=23  Identities=13%  Similarity=0.307  Sum_probs=16.0

Q ss_pred             CcchhhhccChHHHHhhHHHHhC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHS   23 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~   23 (86)
                      |..||+...+...++.|+...+.
T Consensus         5 c~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           5 CHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             chhHHHHHhhccCceEEEeeccc
Confidence            66777777777777777665443

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=95.03  E-value=0.0076  Score=21.65  Aligned_cols=27  Identities=19%  Similarity=0.567  Sum_probs=16.4

Q ss_pred             CCceecccccccCCChHHHhhhhhCCcceeccccccc
Q psy4084          24 DRQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKV   60 (86)
Q Consensus        24 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~   60 (86)
                      ++.|.|..||.....          +.|-.|+.|+..
T Consensus         3 ~~~~vC~vCGyi~~g----------~~Pe~CPvCg~~   29 (36)
T d1yuza2           3 DKFHLCPICGYIHKG----------EDFEKCPICFRP   29 (36)
T ss_dssp             CCEEECSSSCCEEES----------SCCSBCTTTCCB
T ss_pred             CCEEECCCCCCEeeC----------CCCCcCCCCCCc
Confidence            455778888755321          345577777653

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.99  E-value=0.0099  Score=20.47  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=18.0

Q ss_pred             ceecccccccccCHHHHHHHHH
Q psy4084          51 QFACHMCIKVFPSQDKLRMHML   72 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~   72 (86)
                      .|.|.-||-.|.+.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4788889999999988887764

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.013  Score=23.69  Aligned_cols=27  Identities=19%  Similarity=0.380  Sum_probs=23.2

Q ss_pred             CcceecccccccccCHHHHHHHHHhCC
Q psy4084          49 DRQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        49 ~~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      ...|+|..|.-.|.+...|..|+..|.
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhcc
Confidence            346999999999999999999988764

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.038  Score=18.19  Aligned_cols=19  Identities=21%  Similarity=0.389  Sum_probs=14.3

Q ss_pred             cchhhhccChHHHHhhHHH
Q psy4084           2 SECMGKFTEYQVIRKHIRT   20 (86)
Q Consensus         2 ~~C~~~~~~~~~l~~h~~~   20 (86)
                      +-||+.|+++..|..|..-
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            4588888888888877664

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=92.07  E-value=0.03  Score=27.16  Aligned_cols=36  Identities=19%  Similarity=0.365  Sum_probs=26.8

Q ss_pred             hHHHhhhhhC----C------cceecccccccccCHHHHHHHHHhCC
Q psy4084          39 QDKLRMHMLS----D------RQFACHMCIKVFPSQDKLRMHMLSGL   75 (86)
Q Consensus        39 ~~~l~~h~~~----~------~~~~C~~C~~~~~~~~~l~~h~~~~~   75 (86)
                      ...|..|++.    .      +-|+|..||+ +....+|..||+.|-
T Consensus       124 GgrlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         124 GAALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             HHHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             hHHHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHHcC
Confidence            4566677653    1      3478999997 567889999999873

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.1  Score=18.17  Aligned_cols=23  Identities=30%  Similarity=0.727  Sum_probs=14.5

Q ss_pred             cceecccccccccCHHHHHHHHH
Q psy4084          50 RQFACHMCIKVFPSQDKLRMHML   72 (86)
Q Consensus        50 ~~~~C~~C~~~~~~~~~l~~h~~   72 (86)
                      +-|.|+.|-+-..+...+.+|+.
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHH
Confidence            34666666666666666666654

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.11  E-value=0.16  Score=23.18  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=12.9

Q ss_pred             ceecccccccccCHHHHHHHHHhC
Q psy4084          51 QFACHMCIKVFPSQDKLRMHMLSG   74 (86)
Q Consensus        51 ~~~C~~C~~~~~~~~~l~~h~~~~   74 (86)
                      +..|..|.+.|.+...+-.|++..
T Consensus        15 ~~~CLFCd~~f~s~~~~l~H~k~~   38 (121)
T d1wira_          15 HTPCLFCDRLFASAEETFSHCKLE   38 (121)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHS
T ss_pred             cceecccCCccCCHHHHHHHHHHh
Confidence            445555555555555555555543

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.095  Score=18.34  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=18.5

Q ss_pred             CcchhhhccChHHHHhhHHHHhCCC
Q psy4084           1 MSECMGKFTEYQVIRKHIRTFHSDR   25 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~~~~~~~   25 (86)
                      |-+|.+.|.+..++.+|+-.-+.++
T Consensus         6 clecmrtfkssfsiwrhqvevhnqn   30 (41)
T d1wjpa3           6 CLECMRTFKSSFSIWRHQVEVHNQN   30 (41)
T ss_dssp             EGGGTEECSSHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHhhheecccc
Confidence            5578888988888888877554443

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.08  E-value=0.08  Score=20.57  Aligned_cols=36  Identities=14%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             CceecccccccCCChHHHhhhh-h--C-----Ccceeccccccc
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHM-L--S-----DRQFACHMCIKV   60 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~-~--~-----~~~~~C~~C~~~   60 (86)
                      +.|+|..|+..+.....-..+- .  +     .--|.|+.|+..
T Consensus         2 ~ky~C~~CgyiYd~~~Gd~~~gi~pGT~F~~LP~dw~CP~C~a~   45 (53)
T d1iroa_           2 KKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVG   45 (53)
T ss_dssp             CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             CCeEcCCCCcEECcccCCcccCCCCCCCHHHCCCCCCCcCCCCc
Confidence            4588888887775432211111 1  1     233788888753

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=89.19  E-value=0.11  Score=19.40  Aligned_cols=36  Identities=11%  Similarity=0.427  Sum_probs=17.7

Q ss_pred             CceecccccccCCChHHHhhhhh-CCcceeccccccc
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHML-SDRQFACHMCIKV   60 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~C~~C~~~   60 (86)
                      +.|+|..|+..+.....=-.-.. ....|.|+.|+..
T Consensus         2 ~~y~C~~CgyiYd~~~Gdgt~Fe~LP~dw~CP~C~a~   38 (45)
T d6rxna_           2 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS   38 (45)
T ss_dssp             CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred             CCeEeCCCCeEECcccCCCCCHHHCCCCCCCcCCCCc
Confidence            35788888876644221000000 0234678887643

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.22  Score=16.95  Aligned_cols=19  Identities=37%  Similarity=0.527  Sum_probs=16.0

Q ss_pred             ccccccccCHHHHHHHHHh
Q psy4084          55 HMCIKVFPSQDKLRMHMLS   73 (86)
Q Consensus        55 ~~C~~~~~~~~~l~~h~~~   73 (86)
                      ..|+..|..+..|..|+..
T Consensus         7 ~~C~~eFdtQd~LV~Hinn   25 (32)
T d2glia1           7 DGCSQEFDSQEQLVHHINS   25 (32)
T ss_dssp             TTCCCBCSCHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHccc
Confidence            3588899999999999876

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.39  E-value=0.16  Score=22.57  Aligned_cols=29  Identities=21%  Similarity=0.427  Sum_probs=17.1

Q ss_pred             CceecccccccCCChHHHhhhhhCCcceecccccccc
Q psy4084          25 RQFACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVF   61 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~   61 (86)
                      .|-.|..||..|..        ...+|-.|+.|...+
T Consensus        66 ~Pp~CrkCGfvFr~--------~~kkPSRCP~CKSE~   94 (105)
T d2gmga1          66 KPAQCRKCGFVFKA--------EINIPSRCPKCKSEW   94 (105)
T ss_dssp             CCCBBTTTCCBCCC--------CSSCCSSCSSSCCCC
T ss_pred             eChhhhhcCCeecc--------cCCCCCCCCCCCCcc
Confidence            35667777777632        114566777776544

>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=87.31  E-value=0.16  Score=19.60  Aligned_cols=36  Identities=14%  Similarity=0.373  Sum_probs=19.5

Q ss_pred             CceecccccccCCChHHHhhh-hh--C-----Ccceeccccccc
Q psy4084          25 RQFACHMCIKVFPSQDKLRMH-ML--S-----DRQFACHMCIKV   60 (86)
Q Consensus        25 ~~~~c~~c~~~~~~~~~l~~h-~~--~-----~~~~~C~~C~~~   60 (86)
                      ..|+|..|+..+.....-..+ +.  +     ...|.|+.|+..
T Consensus         2 ~~y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP~~w~CP~C~a~   45 (52)
T d2dsxa1           2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS   45 (52)
T ss_dssp             CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             CeEEeCCCCeEECcccCCcccCCCCCCCHHHCCCCCCCcCCCCc
Confidence            457888888776443221111 11  1     234788888753

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.057  Score=20.34  Aligned_cols=19  Identities=32%  Similarity=0.420  Sum_probs=11.5

Q ss_pred             CcchhhhccChHHHHhhHH
Q psy4084           1 MSECMGKFTEYQVIRKHIR   19 (86)
Q Consensus         1 c~~C~~~~~~~~~l~~h~~   19 (86)
                      |..|+..|+.+.+++.|+-
T Consensus         9 C~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           9 CTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             CTTTTCCCCSSSCHHHHHT
T ss_pred             CcccceeeeeecchHhhhh
Confidence            5566666666666665543

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.70  E-value=0.056  Score=22.42  Aligned_cols=9  Identities=33%  Similarity=0.767  Sum_probs=4.2

Q ss_pred             ceecccccc
Q psy4084          51 QFACHMCIK   59 (86)
Q Consensus        51 ~~~C~~C~~   59 (86)
                      .+.|..||.
T Consensus        51 ~l~CH~Cg~   59 (74)
T d2dkta1          51 EVQCINCEK   59 (74)
T ss_dssp             CEEESSSCC
T ss_pred             EEEeccCCC
Confidence            344555544

>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.46  E-value=0.18  Score=19.53  Aligned_cols=13  Identities=15%  Similarity=0.830  Sum_probs=8.8

Q ss_pred             ceecccccccCCC
Q psy4084          26 QFACHMCIKVFPS   38 (86)
Q Consensus        26 ~~~c~~c~~~~~~   38 (86)
                      .|+|..|+..+..
T Consensus         2 ky~C~~CgyiYd~   14 (53)
T d1brfa_           2 KWVCKICGYIYDE   14 (53)
T ss_dssp             EEEETTTCCEEET
T ss_pred             ceECCCCCcEECc
Confidence            3678888876643

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=81.69  E-value=0.09  Score=18.82  Aligned_cols=30  Identities=3%  Similarity=-0.144  Sum_probs=15.0

Q ss_pred             eecccccccCCChHHHhhhhhCCcceecccccccc
Q psy4084          27 FACHMCIKVFPSQDKLRMHMLSDRQFACHMCIKVF   61 (86)
Q Consensus        27 ~~c~~c~~~~~~~~~l~~h~~~~~~~~C~~C~~~~   61 (86)
                      +.|+.||..|.....     ...+.-.|..||..+
T Consensus         3 ~vc~~cG~~Yh~~~~-----pPk~~g~CD~cg~~L   32 (37)
T d2ak3a2           3 WIHPGSGRVYNIEFN-----PPKTMGIDDLTGEPL   32 (37)
T ss_dssp             EEETTTTEEEETTTB-----CCSSTTBCTTTCCBC
T ss_pred             eeeCCcCChhhhccC-----CccccCCccCCCCcC
Confidence            456777766532111     113345677776543

>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Guillardia theta [TaxId: 55529]

Probab=80.49  E-value=0.35  Score=19.82  Aligned_cols=38  Identities=13%  Similarity=0.519  Sum_probs=21.3

Q ss_pred             CCCceecccccccCCChHHHhhh-hh--C-----Ccceeccccccc
Q psy4084          23 SDRQFACHMCIKVFPSQDKLRMH-ML--S-----DRQFACHMCIKV   60 (86)
Q Consensus        23 ~~~~~~c~~c~~~~~~~~~l~~h-~~--~-----~~~~~C~~C~~~   60 (86)
                      ....|+|..|+..+.....-..+ +.  +     ...|.|+.|+..
T Consensus         4 ~~~ky~C~~CgyiYDp~~GD~~~gI~pGT~F~dLP~dW~CP~Cga~   49 (70)
T d1dx8a_           4 DEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP   49 (70)
T ss_dssp             CSSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred             cCCeEEcCCCCeEECcccCCcccCCCCCCChHHCCCCCCCcCCCCc
Confidence            34568999998776443211111 11  1     234788888754

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=80.15  E-value=0.33  Score=17.03  Aligned_cols=11  Identities=18%  Similarity=0.600  Sum_probs=6.4

Q ss_pred             eecccccccCC
Q psy4084          27 FACHMCIKVFP   37 (86)
Q Consensus        27 ~~c~~c~~~~~   37 (86)
                      +.|+.|+..|.
T Consensus         3 ~~C~~CG~~Yh   13 (35)
T d1s3ga2           3 RICKVCGTSYH   13 (35)
T ss_dssp             EEETTTCCEEE
T ss_pred             cCCcCcCchhc
Confidence            45666666553