Psyllid ID: psy4127

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MQLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP
Secondary Structure (PSIPRED)
ccccccccccccEEEEccccccHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHccccccEEEEEccccccHHHHHHHHHHHHHcccEEEEEEccHHHHcccccHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mqlekirgrhfdaidldpfgnptrFLDAAVSSLRDGGLLLVTCTDmavlcgntpetcYVKYNAVSLKTAACHEMP
Flexible Loop (DISEMBL)
mqlekirgrhfdaidldpfgnPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP
Low Complexity Region (SEG)
MQLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP
Disordered region (IsUnstruct)
*********HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAAC****
Disordered Region (DISOPRED)
************AIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHE*P
Disordered Region (DISEMBL)
MQLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP
Disordered Region (DISPRO)
*****IRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAAC****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q9VK89	578	Probable tRNA (guanine(26	yes	N/A	0.88	0.114	0.666	1e-21
Q9NXH9	659	tRNA (guanine(26)-N(2))-d	yes	N/A	0.96	0.109	0.630	3e-21
Q3TX08	663	tRNA (guanine(26)-N(2))-d	yes	N/A	0.866	0.098	0.692	5e-21
Q23270	526	tRNA (guanine(26)-N(2))-d	yes	N/A	0.986	0.140	0.552	4e-20
Q9SRU7	589	Probable tRNA (guanine(26	yes	N/A	0.88	0.112	0.560	2e-18
Q9LFU5	593	Probable tRNA (guanine(26	no	N/A	0.88	0.111	0.590	4e-18
Q9P804	548	tRNA (guanine(26)-N(2))-d	yes	N/A	0.853	0.116	0.553	4e-15
P81554	381	tRNA (guanine(26)-N(2))-d	yes	N/A	0.906	0.178	0.514	7e-14
O59493	381	tRNA (guanine(26)-N(2))-d	yes	N/A	0.906	0.178	0.529	8e-14
Q9V1P3	379	tRNA (guanine(26)-N(2))-d	yes	N/A	0.906	0.179	0.5	1e-13

>sp|Q9VK89|TRM1_DROME Probable tRNA (guanine(26)-N(2))-dimethyltransferase OS=Drosophila melanogaster GN=CG6388 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/66 (66%), Positives = 50/66 (75%)

Query: 9   RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
           + FDA+DLDP+G P RFLD A+  L DGGLLLVT TDMAVL GN PE CYVKY +V L+ 
Sbjct: 172 KRFDAVDLDPYGCPNRFLDGAMQCLVDGGLLLVTATDMAVLAGNAPEACYVKYGSVPLRM 231

Query: 69  AACHEM 74
             CHEM
Sbjct: 232 KCCHEM 237

Dimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1EC: 6

>sp|Q9NXH9|TRM1_HUMAN tRNA (guanine(26)-N(2))-dimethyltransferase OS=Homo sapiens GN=TRMT1 PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/73 (63%), Positives = 58/73 (79%), Gaps = 1/73 (1%)

Query: 2   QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61
           Q +++  R FD IDLDP+G+P  FLDAAV ++ +GGLL VTCTDMAVL GN+ ETCY KY
Sbjct: 219 QHQRVSER-FDVIDLDPYGSPATFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKY 277

Query: 62  NAVSLKTAACHEM 74
            A++LK+ ACHEM
Sbjct: 278 GAMALKSRACHEM 290

Dimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 6

>sp|Q3TX08|TRM1_MOUSE tRNA (guanine(26)-N(2))-dimethyltransferase OS=Mus musculus GN=Trmt1 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 53/65 (81%)

Query: 10  HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTA 69
            FD IDLDP+G+P  FLDAAV ++ DGGLL VTCTDMAVL GN+ ETCY KY A++LK+ 
Sbjct: 225 RFDVIDLDPYGSPAPFLDAAVQAVSDGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSR 284

Query: 70  ACHEM 74
           ACHEM
Sbjct: 285 ACHEM 289

Dimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 6

>sp|Q23270|TRM1_CAEEL tRNA (guanine(26)-N(2))-dimethyltransferase OS=Caenorhabditis elegans GN=trm-1 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 2/76 (2%)

Query: 1   MQLEKIRG--RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
           M + + RG  + F A+DLDP+G  + FLD+AV  + D G+L+VTCTDMAVLCGNTPE CY
Sbjct: 153 MTMMEHRGIDKRFHAVDLDPYGTASTFLDSAVQCVADRGILMVTCTDMAVLCGNTPEACY 212

Query: 59  VKYNAVSLKTAACHEM 74
            KY+AV+ +   CHE+
Sbjct: 213 NKYDAVTTRMKCCHEV 228

Dimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 6

>sp|Q9SRU7|TRM2_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 OS=Arabidopsis thaliana GN=At3g02320 PE=2 SV=3

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 48/66 (72%)

Query: 9   RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
           + FD +DLDP+G+P+ FLD+A+ S+ DGGLL+ T TDMAVLCG   E CY KY +  L+ 
Sbjct: 192 KEFDVVDLDPYGSPSIFLDSAIQSVTDGGLLMCTATDMAVLCGGNGEVCYSKYGSYPLRA 251

Query: 69  AACHEM 74
             CHEM
Sbjct: 252 KYCHEM 257

Dimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 6

>sp|Q9LFU5|TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 47/66 (71%)

Query: 9   RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
           + FD +DLDP+G P+ FLD+AV S+ DGGLL+ T TDMAVLCG   E CY KY +  LK 
Sbjct: 192 KDFDVVDLDPYGAPSIFLDSAVQSVADGGLLMCTATDMAVLCGANGEVCYSKYGSYPLKG 251

Query: 69  AACHEM 74
             CHEM
Sbjct: 252 KYCHEM 257

Dimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 6

>sp|Q9P804|TRM1_SCHPO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 10  HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNT-PETCYVKYNAVSLKT 68
           H+D IDLDP+G+   FLDAAV S+   GLL +TCTD AVL GN  PE C+  Y   SL++
Sbjct: 194 HYDVIDLDPYGSAAPFLDAAVQSVSKDGLLCITCTDSAVLAGNAYPEKCFSNYGGSSLRS 253

Query: 69  AACHE 73
             CHE
Sbjct: 254 NFCHE 258

Dimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 6

>sp|P81554|TRM1_PYRFU tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=trm1 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 45/68 (66%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           + R+F  IDLDPFG+P  FLD A+ S++  G+L VT TD A LCG  P+ C  KY AV L
Sbjct: 130 KHRYFHFIDLDPFGSPMEFLDTALRSVKRKGILGVTATDGAPLCGAHPKACLRKYLAVPL 189

Query: 67  KTAACHEM 74
           +   CHE+
Sbjct: 190 RGELCHEV 197

Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 6

>sp|O59493|TRM1_PYRHO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=trm1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 43/68 (63%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           R R+F  IDLDPFG+P  FLD A+ S +  G+L VT TD A LCG  P  C  KY AV L
Sbjct: 131 RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPL 190

Query: 67  KTAACHEM 74
           +   CHE+
Sbjct: 191 RGELCHEV 198

Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 6

>sp|Q9V1P3|TRM1_PYRAB tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=trm1 PE=3 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 45/68 (66%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           + R+F  IDLDPFG+P  FLD A+ S++  G+L +T TD A LCG  P+ C  KY AV L
Sbjct: 128 KHRYFHFIDLDPFGSPMEFLDTALRSVKRKGILGITATDGAPLCGAHPKACMRKYLAVPL 187

Query: 67  KTAACHEM 74
           +   CHE+
Sbjct: 188 RGELCHEV 195

Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
158298627	506	AGAP009740-PA [Anopheles gambiae str. PE	0.88	0.130	0.742	4e-23
170041673	557	N(2),N(2)-dimethylguanosine tRNA methylt	0.88	0.118	0.727	6e-23
157125947	571	tRNA (guanine-N2-)-methyltransferase, pu	0.88	0.115	0.727	6e-23
380024541	510	PREDICTED: probable tRNA (guanine(26)-N(	0.906	0.133	0.691	9e-23
328780361	839	PREDICTED: probable N(2),N(2)-dimethylgu	0.906	0.081	0.691	1e-22
312373612	356	hypothetical protein AND_17213 [Anophele	0.88	0.185	0.727	5e-22
357624400	547	putative tRNA (guanine-N2-)-methyltransf	0.986	0.135	0.662	6e-22
156552980	529	PREDICTED: probable N(2),N(2)-dimethylgu	0.986	0.139	0.648	7e-22
270012196	479	hypothetical protein TcasGA2_TC006307 [T	0.906	0.141	0.676	3e-21
189240047	930	PREDICTED: similar to Probable N(2),N(2)	0.906	0.073	0.676	3e-21

>gi|158298627|ref|XP_318825.4| AGAP009740-PA [Anopheles gambiae str. PEST] gi|157013975|gb|EAA14208.5| AGAP009740-PA [Anopheles gambiae str. PEST]

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/66 (74%), Positives = 55/66 (83%)

Query: 9   RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
           + F AIDLDP+G+PTRFLD AV S+ DGGLLL+T TDMAVL GNTPE CYVKY +V LKT
Sbjct: 157 QRFTAIDLDPYGHPTRFLDGAVQSIEDGGLLLITATDMAVLAGNTPEACYVKYGSVPLKT 216

Query: 69  AACHEM 74
            ACHEM
Sbjct: 217 KACHEM 222

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041673|ref|XP_001848579.1| N(2),N(2)-dimethylguanosine tRNA methyltransferase [Culex quinquefasciatus] gi|167865239|gb|EDS28622.1| N(2),N(2)-dimethylguanosine tRNA methyltransferase [Culex quinquefasciatus]

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 55/66 (83%)

Query: 9   RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
           + F AIDLDP+G+PTRFLD AV S+ DGGLLL+T TDMAVL GN+PE CYVKY +V LKT
Sbjct: 153 KRFTAIDLDPYGHPTRFLDGAVQSIEDGGLLLITATDMAVLAGNSPEACYVKYGSVPLKT 212

Query: 69  AACHEM 74
            ACHEM
Sbjct: 213 KACHEM 218

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125947|ref|XP_001654461.1| tRNA (guanine-N2-)-methyltransferase, putative [Aedes aegypti] gi|108873471|gb|EAT37696.1| AAEL010349-PA [Aedes aegypti]

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 55/66 (83%)

Query: 9   RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
           + F AIDLDP+G+PTRFLD AV S+ DGGLLL+T TDMAVL GN+PE CYVKY +V LKT
Sbjct: 155 KRFTAIDLDPYGHPTRFLDGAVQSIEDGGLLLITATDMAVLAGNSPEACYVKYGSVPLKT 214

Query: 69  AACHEM 74
            ACHEM
Sbjct: 215 KACHEM 220

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024541|ref|XP_003696053.1| PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase-like [Apis florea]

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 56/68 (82%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           R   FDAIDLDP+G PT FLD+AV  + DGGLL++T TDMAVL GN+PETCY+KY A+SL
Sbjct: 135 RKSKFDAIDLDPYGCPTTFLDSAVQCISDGGLLMITATDMAVLAGNSPETCYLKYGAISL 194

Query: 67  KTAACHEM 74
           +T ACHEM
Sbjct: 195 RTKACHEM 202

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780361|ref|XP_003249791.1| PREDICTED: probable N(2),N(2)-dimethylguanosine tRNA methyltransferase-like [Apis mellifera]

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 56/68 (82%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           R   FDAIDLDP+G PT FLD+AV  + DGGLL++T TDMAVL GN+PETCY+KY A+SL
Sbjct: 135 RKTKFDAIDLDPYGCPTTFLDSAVQCVTDGGLLMITATDMAVLAGNSPETCYLKYGAISL 194

Query: 67  KTAACHEM 74
           +T ACHEM
Sbjct: 195 RTKACHEM 202

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373612|gb|EFR21322.1| hypothetical protein AND_17213 [Anopheles darlingi]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 55/66 (83%)

Query: 9  RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
          + F AIDLDP+G+PTRFLD AV S+ DGGLLL+T TDMAVL GNTPE CYVKY ++ LKT
Sbjct: 7  QRFTAIDLDPYGHPTRFLDGAVQSVEDGGLLLITATDMAVLAGNTPEACYVKYGSIPLKT 66

Query: 69 AACHEM 74
           ACHEM
Sbjct: 67 KACHEM 72

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624400|gb|EHJ75185.1| putative tRNA (guanine-N2-)-methyltransferase [Danaus plexippus]

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/74 (66%), Positives = 58/74 (78%)

Query: 1   MQLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVK 60
           M   K+  + F AIDLDP+G P+ FLD+AV S++DGGLLLVT TDMAVL GN+PETCY K
Sbjct: 146 MYKHKLPLKRFAAIDLDPYGCPSIFLDSAVQSIQDGGLLLVTATDMAVLAGNSPETCYSK 205

Query: 61  YNAVSLKTAACHEM 74
           Y A+SLKT  CHEM
Sbjct: 206 YGAISLKTKCCHEM 219

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156552980|ref|XP_001603751.1| PREDICTED: probable N(2),N(2)-dimethylguanosine tRNA methyltransferase-like [Nasonia vitripennis]

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/74 (64%), Positives = 58/74 (78%)

Query: 1   MQLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVK 60
           M + + R   FDA+DLDP+G P+ FLD AV  ++D GLLLVT TDMAVL GN+PETCYVK
Sbjct: 134 MVMYQNRRTKFDAVDLDPYGCPSIFLDGAVQCIKDNGLLLVTATDMAVLAGNSPETCYVK 193

Query: 61  YNAVSLKTAACHEM 74
           Y AVSLK+ +CHEM
Sbjct: 194 YGAVSLKSKSCHEM 207

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012196|gb|EFA08644.1| hypothetical protein TcasGA2_TC006307 [Tribolium castaneum]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 57/68 (83%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           + R FDAIDLDP+G P+ FLD+AV ++++GGLLLVT TDMAVL GN+PETCY KY A+SL
Sbjct: 137 KERRFDAIDLDPYGCPSIFLDSAVQTIKEGGLLLVTATDMAVLAGNSPETCYSKYGAISL 196

Query: 67  KTAACHEM 74
           +  ACHEM
Sbjct: 197 RMKACHEM 204

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240047|ref|XP_966393.2| PREDICTED: similar to Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) [Tribolium castaneum]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 57/68 (83%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           + R FDAIDLDP+G P+ FLD+AV ++++GGLLLVT TDMAVL GN+PETCY KY A+SL
Sbjct: 137 KERRFDAIDLDPYGCPSIFLDSAVQTIKEGGLLLVTATDMAVLAGNSPETCYSKYGAISL 196

Query: 67  KTAACHEM 74
           +  ACHEM
Sbjct: 197 RMKACHEM 204

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
UNIPROTKB|K7EJX9	191	TRMT1 "tRNA (guanine(26)-N(2))	0.96	0.376	0.630	6.3e-21
UNIPROTKB|F1MAP8	625	Trmt1 "Protein Trmt1" [Rattus	0.96	0.115	0.657	3.3e-20
UNIPROTKB|J9P9R4	637	TRMT1 "Uncharacterized protein	0.96	0.113	0.643	3.5e-20
UNIPROTKB|E2QUE2	694	TRMT1 "Uncharacterized protein	0.96	0.103	0.643	4.1e-20
MGI|MGI:1289155	663	Trmt1 "tRNA methyltransferase	0.853	0.096	0.703	4.9e-20
UNIPROTKB|Q9NXH9	659	TRMT1 "tRNA (guanine(26)-N(2))	0.96	0.109	0.630	6.1e-20
UNIPROTKB|F1SD98	542	TRMT1 "Uncharacterized protein	0.96	0.132	0.643	6.5e-20
UNIPROTKB|I3LQ55	577	I3LQ55 "Uncharacterized protei	0.96	0.124	0.643	7.6e-20
UNIPROTKB|F6R277	662	TRMT1 "Uncharacterized protein	0.96	0.108	0.643	7.9e-20
FB|FBgn0032430	578	CG6388 [Drosophila melanogaste	0.88	0.114	0.666	1.6e-19

UNIPROTKB|K7EJX9 TRMT1 "tRNA (guanine(26)-N(2))-dimethyltransferase" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 46/73 (63%), Positives = 58/73 (79%)

Query:     2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61
             Q +++  R FD IDLDP+G+P  FLDAAV ++ +GGLL VTCTDMAVL GN+ ETCY KY
Sbjct:     5 QHQRVSER-FDVIDLDPYGSPATFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKY 63

Query:    62 NAVSLKTAACHEM 74
              A++LK+ ACHEM
Sbjct:    64 GAMALKSRACHEM 76

GO:0003723 "RNA binding" evidence=IEA

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

UNIPROTKB|F1MAP8 Trmt1 "Protein Trmt1" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 3.3e-20, P = 3.3e-20
 Identities = 48/73 (65%), Positives = 57/73 (78%)

Query:     2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61
             Q +K   R FD IDLDP+G+P  FLDAAV ++ DGGLL VTCTDMAVL GN+ ETCY KY
Sbjct:   180 QHQKASER-FDVIDLDPYGSPAPFLDAAVQAVSDGGLLCVTCTDMAVLAGNSGETCYSKY 238

Query:    62 NAVSLKTAACHEM 74
              A++LK+ ACHEM
Sbjct:   239 GAMALKSRACHEM 251

GO:0003723 "RNA binding" evidence=IEA

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P9R4 TRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 47/73 (64%), Positives = 58/73 (79%)

Query:     2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61
             Q +K+  R FD IDLDP+G+P  FLDAAV ++ +GGLL VTCTDMAVL GN+ ETCY KY
Sbjct:   196 QHQKVSER-FDVIDLDPYGSPAPFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKY 254

Query:    62 NAVSLKTAACHEM 74
              A++LK+ ACHEM
Sbjct:   255 GAMALKSRACHEM 267

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2QUE2 TRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 47/73 (64%), Positives = 58/73 (79%)

Query:     2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61
             Q +K+  R FD IDLDP+G+P  FLDAAV ++ +GGLL VTCTDMAVL GN+ ETCY KY
Sbjct:   253 QHQKVSER-FDVIDLDPYGSPAPFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKY 311

Query:    62 NAVSLKTAACHEM 74
              A++LK+ ACHEM
Sbjct:   312 GAMALKSRACHEM 324

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:1289155 Trmt1 "tRNA methyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 247 (92.0 bits), Expect = 4.9e-20, P = 4.9e-20
 Identities = 45/64 (70%), Positives = 53/64 (82%)

Query:    11 FDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAA 70
             FD IDLDP+G+P  FLDAAV ++ DGGLL VTCTDMAVL GN+ ETCY KY A++LK+ A
Sbjct:   226 FDVIDLDPYGSPAPFLDAAVQAVSDGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRA 285

Query:    71 CHEM 74
             CHEM
Sbjct:   286 CHEM 289

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008033 "tRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9NXH9 TRMT1 "tRNA (guanine(26)-N(2))-dimethyltransferase" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 6.1e-20, P = 6.1e-20
 Identities = 46/73 (63%), Positives = 58/73 (79%)

Query:     2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61
             Q +++  R FD IDLDP+G+P  FLDAAV ++ +GGLL VTCTDMAVL GN+ ETCY KY
Sbjct:   219 QHQRVSER-FDVIDLDPYGSPATFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKY 277

Query:    62 NAVSLKTAACHEM 74
              A++LK+ ACHEM
Sbjct:   278 GAMALKSRACHEM 290

GO:0003723 "RNA binding" evidence=IEA

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1SD98 TRMT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 6.5e-20, P = 6.5e-20
 Identities = 47/73 (64%), Positives = 57/73 (78%)

Query:     2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61
             Q +K   R FD IDLDP+G+P  FLDAAV ++ +GGLL VTCTDMAVL GN+ ETCY KY
Sbjct:   193 QHQKASER-FDVIDLDPYGSPAPFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKY 251

Query:    62 NAVSLKTAACHEM 74
              A++LK+ ACHEM
Sbjct:   252 GAMALKSRACHEM 264

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|I3LQ55 I3LQ55 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 7.6e-20, P = 7.6e-20
 Identities = 47/73 (64%), Positives = 57/73 (78%)

Query:     2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61
             Q +K   R FD IDLDP+G+P  FLDAAV ++ +GGLL VTCTDMAVL GN+ ETCY KY
Sbjct:   205 QHQKASER-FDVIDLDPYGSPAPFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKY 263

Query:    62 NAVSLKTAACHEM 74
              A++LK+ ACHEM
Sbjct:   264 GAMALKSRACHEM 276

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F6R277 TRMT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 7.9e-20, P = 7.9e-20
 Identities = 47/73 (64%), Positives = 57/73 (78%)

Query:     2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61
             Q +K   R FD IDLDP+G+P  FLDAAV ++ +GGLL VTCTDMAVL GN+ ETCY KY
Sbjct:   221 QHQKASER-FDVIDLDPYGSPASFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKY 279

Query:    62 NAVSLKTAACHEM 74
              A++LK+ ACHEM
Sbjct:   280 GAMALKSRACHEM 292

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

FB|FBgn0032430 CG6388 [Drosophila melanogaster (taxid:7227)]

 Score = 241 (89.9 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 44/66 (66%), Positives = 50/66 (75%)

Query:     9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
             + FDA+DLDP+G P RFLD A+  L DGGLLLVT TDMAVL GN PE CYVKY +V L+ 
Sbjct:   172 KRFDAVDLDPYGCPNRFLDGAMQCLVDGGLLLVTATDMAVLAGNAPEACYVKYGSVPLRM 231

Query:    69 AACHEM 74
               CHEM
Sbjct:   232 KCCHEM 237

GO:0006400 "tRNA modification" evidence=ISS

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3CW75	TRM1_METMJ	2, ., 1, ., 1, ., 2, 1, 6	0.5652	0.5866	0.1185	yes	N/A
A9A871	TRM1_METM6	2, ., 1, ., 1, ., 2, 1, 6	0.5517	0.76	0.1528	yes	N/A
O59493	TRM1_PYRHO	2, ., 1, ., 1, ., 2, 1, 6	0.5294	0.9066	0.1784	yes	N/A
Q9SRU7	TRM2_ARATH	2, ., 1, ., 1, ., 2, 1, 6	0.5606	0.88	0.1120	yes	N/A
A5UM08	TRM1_METS3	2, ., 1, ., 1, ., 2, 1, 6	0.5068	0.96	0.1855	yes	N/A
Q3TX08	TRM1_MOUSE	2, ., 1, ., 1, ., 2, 1, 6	0.6923	0.8666	0.0980	yes	N/A
C5A6N2	TRM1_THEGJ	2, ., 1, ., 1, ., 2, 1, 6	0.5076	0.8666	0.1719	yes	N/A
Q9NXH9	TRM1_HUMAN	2, ., 1, ., 1, ., 2, 1, 6	0.6301	0.96	0.1092	yes	N/A
Q5JIB3	TRM1_PYRKO	2, ., 1, ., 1, ., 2, 1, 6	0.5076	0.8666	0.1728	yes	N/A
Q9VK89	TRM1_DROME	2, ., 1, ., 1, ., 2, 1, 6	0.6666	0.88	0.1141	yes	N/A
Q23270	TRM1_CAEEL	2, ., 1, ., 1, ., 2, 1, 6	0.5526	0.9866	0.1406	yes	N/A
A6VIL5	TRM1_METM7	2, ., 1, ., 1, ., 2, 1, 6	0.5517	0.76	0.1528	yes	N/A
Q9P804	TRM1_SCHPO	2, ., 1, ., 1, ., 2, 1, 6	0.5538	0.8533	0.1167	yes	N/A
P81554	TRM1_PYRFU	2, ., 1, ., 1, ., 2, 1, 6	0.5147	0.9066	0.1784	yes	N/A
A4FZY5	TRM1_METM5	2, ., 1, ., 1, ., 2, 1, 6	0.5517	0.76	0.1528	yes	N/A
P0CW64	TRM1_METMI	2, ., 1, ., 1, ., 2, 1, 6	0.5689	0.76	0.1528	yes	N/A
P0CW65	TRM1_METMP	2, ., 1, ., 1, ., 2, 1, 6	0.5689	0.76	0.1528	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
pfam02005	375	pfam02005, TRM, N2,N2-dimethylguanosine tRNA methy	3e-34
COG1867	380	COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyl	3e-28
PRK04338	382	PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tR	7e-26
TIGR00308	374	TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltran	5e-24

>gnl|CDD|216840 pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase

 Score =  119 bits (300), Expect = 3e-34
 Identities = 41/68 (60%), Positives = 47/68 (69%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
             R FD IDLDPFG+P  FLD+AV S++ GGLL VT TD AVLCG  PE C  KY AV L
Sbjct: 117 NHRRFDVIDLDPFGSPAPFLDSAVQSVKRGGLLCVTATDTAVLCGAYPEACLRKYGAVPL 176

Query: 67  KTAACHEM 74
           +   CHE+
Sbjct: 177 RGEFCHEV 184

This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria. Length = 375

>gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

 Score =  103 bits (258), Expect = 3e-28
 Identities = 41/67 (61%), Positives = 47/67 (70%)

Query: 9   RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
           R FD ID+DPFG+P  FLDAA+ S+R GGLL VT TD A LCG+ P  C  KY AV LKT
Sbjct: 120 RAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVTATDTAPLCGSYPRKCRRKYGAVPLKT 179

Query: 69  AACHEMP 75
             CHE+ 
Sbjct: 180 EFCHEVG 186

Length = 380

>gnl|CDD|235286 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

 Score = 96.9 bits (242), Expect = 7e-26
 Identities = 38/68 (55%), Positives = 47/68 (69%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
             R FD +D+DPFG+P  FLD+A+ S++ GGLL VT TD A LCG  P++C  KY AV L
Sbjct: 122 EERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVTATDTAPLCGAYPKSCLRKYGAVPL 181

Query: 67  KTAACHEM 74
           KT   HEM
Sbjct: 182 KTEFYHEM 189

Length = 382

>gnl|CDD|232913 TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltransferase

 Score = 91.8 bits (228), Expect = 5e-24
 Identities = 35/67 (52%), Positives = 46/67 (68%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           R R F  ID+DPFG P  F+D+A+ +  + GLLLVT TD + LCGN P++C  KY A  +
Sbjct: 111 RNRKFHVIDIDPFGTPAPFVDSAIQASAERGLLLVTATDTSALCGNYPKSCLRKYGANPV 170

Query: 67  KTAACHE 73
           KT +CHE
Sbjct: 171 KTESCHE 177

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes [Protein synthesis, tRNA and rRNA base modification]. Length = 374

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	100.0
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	100.0
KOG1253|consensus	525		99.98
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.95
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.87
PRK04457	262	spermidine synthase; Provisional	89.55
PRK14901	434	16S rRNA methyltransferase B; Provisional	88.16
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	85.33
PLN02366	308	spermidine synthase	85.16
PRK00811	283	spermidine synthase; Provisional	84.71
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	84.24
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	84.03
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	83.18
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	82.98
PRK00536	262	speE spermidine synthase; Provisional	82.51
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	82.46
PRK03612	521	spermidine synthase; Provisional	81.14
PLN02823	336	spermine synthase	80.86

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=100.00  E-value=4.9e-35  Score=222.24  Aligned_cols=73  Identities=59%  Similarity=1.018  Sum_probs=58.7

Q ss_pred             ccccccCCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccCCCCccCCC
Q psy4127           2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP   75 (75)
Q Consensus         2 ~m~~~~~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~~   75 (75)
                      +|+. .+++||+|||||||||+||||+|+|++++||+|+|||||+++|||++|++|+||||++|++++++||++
T Consensus       114 ll~~-~~~~fD~IDlDPfGSp~pfldsA~~~v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~g  186 (377)
T PF02005_consen  114 LLYS-RQERFDVIDLDPFGSPAPFLDSALQAVKDGGLLCVTATDTAVLCGSYPEKCFRKYGAVPRKTPYCHEMG  186 (377)
T ss_dssp             HHCH-STT-EEEEEE--SS--HHHHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSSB---STTHHHHH
T ss_pred             Hhhh-ccccCCEEEeCCCCCccHhHHHHHHHhhcCCEEEEeccccccccCCChhHHHHhcCCcccCCCcccHHH
Confidence            4542 467899999999999999999999999999999999999999999999999999999999999999974

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-33  Score=216.27  Aligned_cols=73  Identities=58%  Similarity=0.983  Sum_probs=69.0

Q ss_pred             ccccccCCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccCCCCccCCC
Q psy4127           2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP   75 (75)
Q Consensus         2 ~m~~~~~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~~   75 (75)
                      +|+++. ..||+|||||||||+||||+|++++++||+|||||||+++|||++|++|+|||++.+++++++||++
T Consensus       114 lm~~~~-~~fd~IDiDPFGSPaPFlDaA~~s~~~~G~l~vTATD~a~L~G~~p~~c~rkY~a~~~~~~~~hE~g  186 (380)
T COG1867         114 LLHELH-RAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVTATDTAPLCGSYPRKCRRKYGAVPLKTEFCHEVG  186 (380)
T ss_pred             HHHhcC-CCccEEecCCCCCCchHHHHHHHHhhcCCEEEEEecccccccCCChHHHHHHhccccCCCcchhHHH
Confidence            566643 6899999999999999999999999999999999999999999999999999999999999999974

>KOG1253|consensus

Probab=99.98  E-value=8.1e-34  Score=223.17  Aligned_cols=74  Identities=58%  Similarity=1.044  Sum_probs=70.0

Q ss_pred             cccccc--CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccCCCCccCCC
Q psy4127           2 QLEKIR--GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP   75 (75)
Q Consensus         2 ~m~~~~--~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~~   75 (75)
                      +|++|+  .++||+|||||||||++|||+|+|+|++||||||||||+++|||+.|++||+|||++++++++|||||
T Consensus       173 lM~~~~~~~~~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL~gn~pe~C~~kYG~~~lr~~~chE~a  248 (525)
T KOG1253|consen  173 LMYEHPMVAKFFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVLAGNAPEKCYSKYGASILRMKYCHEMA  248 (525)
T ss_pred             HHHhccccccccceEecCCCCCccHHHHHHHHHhhcCCEEEEEecchHhhccCChhhHHHhcCcccccchhhhHHH
Confidence            567653  47899999999999999999999999999999999999999999999999999999999999999986

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.95  E-value=2.6e-28  Score=185.36  Aligned_cols=67  Identities=51%  Similarity=0.972  Sum_probs=65.4

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccCCCCccCCC
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP   75 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~~   75 (75)
                      ++||+||+||||+|++|||+|++++++||+|+|||||+++|||++|++|+||||+++++++++||++
T Consensus       113 ~~fDvIdlDPfGs~~~fld~al~~~~~~glL~vTaTD~~~L~G~~~~~~~rkYga~~~~~~~~~E~g  179 (374)
T TIGR00308       113 RKFHVIDIDPFGTPAPFVDSAIQASAERGLLLVTATDTSALCGNYPKSCLRKYGANPVKTESCHESA  179 (374)
T ss_pred             CCCCEEEeCCCCCcHHHHHHHHHhcccCCEEEEEecccHHhcCCChHHHHHHhCCcccCCcchHHHH
Confidence            5799999999999999999999999999999999999999999999999999999999999999985

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.87  E-value=1.3e-22  Score=154.27  Aligned_cols=68  Identities=56%  Similarity=0.976  Sum_probs=65.6

Q ss_pred             CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccCCCCccCCC
Q psy4127           8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP   75 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~~   75 (75)
                      +++||+||+||||+|.+||++|++++++||+|+|||||+++|||+++.+|+++||.+|.+++++||++
T Consensus       123 ~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvSAtD~~~L~g~y~~~~~~~yd~fP~~~~~~~E~g  190 (382)
T PRK04338        123 ERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVTATDTAPLCGAYPKSCLRKYGAVPLKTEFYHEMG  190 (382)
T ss_pred             cCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEEecCchhhcCCChHHHHHHhcCcccCCcchhHHH
Confidence            35699999999999999999999999999999999999999999999999999999999999999975

>PRK04457 spermidine synthase; Provisional

Probab=89.55  E-value=0.73  Score=33.43  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             CCCCceeeeCCCCCc--------hhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDPFGNP--------TRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp--------~pfldsA~~av~~gGll~vTaT   44 (75)
                      ++.||+|=+|.|.+.        ..|+..+.+.+++||++.+...
T Consensus       134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~  178 (262)
T PRK04457        134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW  178 (262)
T ss_pred             CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence            357999999998654        5899999999999999999643

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=88.16  E-value=0.84  Score=35.20  Aligned_cols=36  Identities=36%  Similarity=0.551  Sum_probs=27.9

Q ss_pred             CCCceeeeCCC--CCc------------------------hhhHHHHHHhcccCcE-EEEEec
Q psy4127           9 RHFDAIDLDPF--GNP------------------------TRFLDAAVSSLRDGGL-LLVTCT   44 (75)
Q Consensus         9 ~~fD~IDlDPf--GSp------------------------~pfldsA~~av~~gGl-l~vTaT   44 (75)
                      +.||.|=+||=  |+-                        ...|+.|.+.+|+||. ++.|||
T Consensus       324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs  386 (434)
T PRK14901        324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT  386 (434)
T ss_pred             ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            46999999973  321                        3569999999999994 677777

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=85.33  E-value=1.1  Score=29.75  Aligned_cols=39  Identities=23%  Similarity=0.143  Sum_probs=32.7

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccc
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVL   49 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L   49 (75)
                      .-|++||+-.|=||..|+++|.+.  +-=+++++++++..+
T Consensus        29 ~GfeVi~lg~~~s~e~~v~aa~e~--~adii~iSsl~~~~~   67 (132)
T TIGR00640        29 LGFDVDVGPLFQTPEEIARQAVEA--DVHVVGVSSLAGGHL   67 (132)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCchhhhH
Confidence            469999999999999999999876  444999999886544

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>PLN02366 spermidine synthase

Probab=85.16  E-value=1.4  Score=33.02  Aligned_cols=37  Identities=27%  Similarity=0.542  Sum_probs=28.1

Q ss_pred             CCCCceeeeCC---CCCc-----hhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDP---FGNP-----TRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDP---fGSp-----~pfldsA~~av~~gGll~vTaT   44 (75)
                      +++||+|=+|.   .|-+     ..|++.+.+++++||++.+.++
T Consensus       163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~  207 (308)
T PLN02366        163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE  207 (308)
T ss_pred             CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence            45799998874   4422     2589999999999999977654

>PRK00811 spermidine synthase; Provisional

Probab=84.71  E-value=1.9  Score=31.53  Aligned_cols=37  Identities=24%  Similarity=0.567  Sum_probs=28.2

Q ss_pred             CCCCceeeeC---CCCCc-----hhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLD---PFGNP-----TRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlD---PfGSp-----~pfldsA~~av~~gGll~vTaT   44 (75)
                      +++||+|=+|   |+|.+     ..|+..+-+.+++||++.+.+.
T Consensus       148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            4579998775   66644     4678888899999999987543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=84.24  E-value=2.4  Score=29.20  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=28.5

Q ss_pred             CCCCceeee---CCCCC---------chhhHHHHHHhcccCcEEEEEe
Q psy4127           8 GRHFDAIDL---DPFGN---------PTRFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus         8 ~~~fD~IDl---DPfGS---------p~pfldsA~~av~~gGll~vTa   43 (75)
                      ++.||.|.+   ||+-.         -..||..+.+.+++||.+.++.
T Consensus       109 ~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        109 DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            456999988   66643         2468999999999999999864

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=84.03  E-value=2.6  Score=25.37  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=27.3

Q ss_pred             CCCceeeeCC-CCCchhhHHHHHHhcccCcEEEEEe
Q psy4127           9 RHFDAIDLDP-FGNPTRFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus         9 ~~fD~IDlDP-fGSp~pfldsA~~av~~gGll~vTa   43 (75)
                      +.||+|=++. ......+++.+.+.+++||.+.++.
T Consensus        87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            4799998763 2233568999999999999999874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=83.18  E-value=1.3  Score=31.55  Aligned_cols=33  Identities=33%  Similarity=0.570  Sum_probs=26.7

Q ss_pred             CCCCceeeeCCCCCchhhHHHHHHhcccCcEEE
Q psy4127           8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLL   40 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~   40 (75)
                      ++.+|.|=.+...+...||++|++++++||+++
T Consensus       167 ~~~~drvim~lp~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  167 EGKFDRVIMNLPESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             TT-EEEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred             ccccCEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence            456888888888888899999999999999986

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=82.98  E-value=1.1  Score=32.29  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             CCceeeeCCCC---Cc-----hhhHHHHHHhcccCcEEEEEe
Q psy4127          10 HFDAIDLDPFG---NP-----TRFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus        10 ~fD~IDlDPfG---Sp-----~pfldsA~~av~~gGll~vTa   43 (75)
                      +||+|=+|.+-   .+     .+|++.+-++++++|++.+.+
T Consensus       150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            89999988775   22     389999999999999999988

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK00536 speE spermidine synthase; Provisional

Probab=82.51  E-value=2.4  Score=31.40  Aligned_cols=35  Identities=14%  Similarity=0.196  Sum_probs=29.7

Q ss_pred             CCCCceeeeC-CCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLD-PFGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlD-PfGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      .++||+|=+| .|.  ..|....-+++++||++.+.++
T Consensus       137 ~~~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        137 IKKYDLIICLQEPD--IHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             CCcCCEEEEcCCCC--hHHHHHHHHhcCCCcEEEECCC
Confidence            4689999999 443  5888999999999999998876

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=82.46  E-value=2.9  Score=30.10  Aligned_cols=36  Identities=42%  Similarity=0.746  Sum_probs=26.8

Q ss_pred             CCCceeeeCC--CCCc------------------------hhhHHHHHHhcccCcEE-EEEec
Q psy4127           9 RHFDAIDLDP--FGNP------------------------TRFLDAAVSSLRDGGLL-LVTCT   44 (75)
Q Consensus         9 ~~fD~IDlDP--fGSp------------------------~pfldsA~~av~~gGll-~vTaT   44 (75)
                      +.||.|=+||  +|+-                        ...|+.|++.+|+||.| +.|||
T Consensus       139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3599999997  4431                        24899999999999965 55566

>PRK03612 spermidine synthase; Provisional

Probab=81.14  E-value=2.7  Score=33.47  Aligned_cols=36  Identities=31%  Similarity=0.427  Sum_probs=28.6

Q ss_pred             CCCCceeeeCCCCC--c-------hhhHHHHHHhcccCcEEEEEe
Q psy4127           8 GRHFDAIDLDPFGN--P-------TRFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus         8 ~~~fD~IDlDPfGS--p-------~pfldsA~~av~~gGll~vTa   43 (75)
                      +++||+|=+|+.-.  |       ..|++.+.+.+++||++.+++
T Consensus       371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            46899999996531  1       148899999999999999875

>PLN02823 spermine synthase

Probab=80.86  E-value=3.7  Score=31.25  Aligned_cols=39  Identities=26%  Similarity=0.452  Sum_probs=29.1

Q ss_pred             CCCCceeeeC---CC--CCc-----hhhHH-HHHHhcccCcEEEEEecCc
Q psy4127           8 GRHFDAIDLD---PF--GNP-----TRFLD-AAVSSLRDGGLLLVTCTDM   46 (75)
Q Consensus         8 ~~~fD~IDlD---Pf--GSp-----~pfld-sA~~av~~gGll~vTaTD~   46 (75)
                      +++||+|=+|   |.  |.|     ..|++ .+.+.++.||++.+.+...
T Consensus       174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~  223 (336)
T PLN02823        174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPA  223 (336)
T ss_pred             CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCc
Confidence            4679999999   43  212     24887 7889999999998876643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
2dul_A	378	Crystal Structure Of Trna G26 Methyltransferase Trm		7e-15
3axs_A	392	Complex Structure Of Trna Methyltransferase Trm1 Fr		1e-11

>pdb|2DUL|A Chain A, Crystal Structure Of Trna G26 Methyltransferase Trm1 In Apo Form From Pyrococcus Horikoshii Length = 378

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 43/68 (63%)
Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           R R+F  IDLDPFG+P  FLD A+ S +  G+L VT TD A LCG  P  C  KY AV L
Sbjct: 128 RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPL 187
Query: 67  KTAACHEM 74
           +   CHE+
Sbjct: 188 RGELCHEV 195

>pdb|3AXS|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From Aquifex Aeolicus With Sinefungin Length = 392

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 3   LEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYN 62
           L K  G  FD +DLDPFG P  F+++   S++ GG+L +T TD A L G  P+TC  +Y 
Sbjct: 118 LRKEWGFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYM 177
Query: 63  AVSLKTAACHEM 74
           A  L+    HE+
Sbjct: 178 ARPLRNEFKHEV 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	2e-21
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	4e-18

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378

 Score = 84.5 bits (208), Expect = 2e-21
 Identities = 36/69 (52%), Positives = 43/69 (62%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           R R+F  IDLDPFG+P  FLD A+ S +  G+L VT TD A LCG  P  C  KY AV L
Sbjct: 128 RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPL 187

Query: 67  KTAACHEMP 75
           +   CHE+ 
Sbjct: 188 RGELCHEVG 196

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392

 Score = 75.3 bits (184), Expect = 4e-18
 Identities = 31/75 (41%), Positives = 43/75 (57%)

Query: 1   MQLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVK 60
             L K  G  FD +DLDPFG P  F+++   S++ GG+L +T TD A L G  P+TC  +
Sbjct: 116 FFLRKEWGFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRR 175

Query: 61  YNAVSLKTAACHEMP 75
           Y A  L+    HE+ 
Sbjct: 176 YMARPLRNEFKHEVG 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.68
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.68
3k6r_A	278	Putative transferase PH0793; structural genomics,	95.13
2frn_A	278	Hypothetical protein PH0793; structural genomics,	92.92
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	92.67
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	91.96
1ws6_A	171	Methyltransferase; structural genomics, riken stru	89.49
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	88.04
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	87.52
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	86.82
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	86.46
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	85.24
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	85.2
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	85.11
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	85.02
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	84.87
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	84.23
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	83.87
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	83.73
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	83.18
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	83.16
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	82.58
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	82.3
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	82.27
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	82.1
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	82.0
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	81.95
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	81.13
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	80.95
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	80.85
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	80.8
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	80.29
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	80.28
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	80.19
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	80.06

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.68  E-value=9.4e-18  Score=126.58  Aligned_cols=67  Identities=43%  Similarity=0.784  Sum_probs=64.3

Q ss_pred             CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccCCCCccCC
Q psy4127           8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEM   74 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~   74 (75)
                      .+.||+|++||||++.+|+++|++.+++||+|++|+||+++|+|+.+..|+|+||..|.+.+++||+
T Consensus       123 ~~~fD~V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~t~~~~l~g~~~~~~~rkYg~~p~r~~~~~e~  189 (392)
T 3axs_A          123 GFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYMARPLRNEFKHEV  189 (392)
T ss_dssp             SSCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHH
T ss_pred             CCCCcEEEECCCcCHHHHHHHHHHHhCCCCEEEEEecchhhhccccHHHHHHHhCCcccccccccch
Confidence            3479999999999999999999999999999999999999999999999999999999999999985

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.68  E-value=1.2e-17  Score=124.54  Aligned_cols=66  Identities=53%  Similarity=0.897  Sum_probs=63.7

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccCCCCccCC
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEM   74 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~   74 (75)
                      +.||+|++||||++.+||++|++.+++||+|++|+||+++|+|+++..|+|+||..|.+++++||+
T Consensus       130 ~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~td~~~l~~~~~~~~~~~yg~~p~~~~~~~e~  195 (378)
T 2dul_A          130 RYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEV  195 (378)
T ss_dssp             TCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHH
T ss_pred             CCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEeecchhhccccHHHHHHHccCCCcccccccch
Confidence            479999999999999999999999999999999999999999999999999999999999999885

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=95.13  E-value=0.016  Score=41.55  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=30.1

Q ss_pred             CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEE
Q psy4127           8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLV   41 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~v   41 (75)
                      ++.||.|-+||-.++..||+.|++++++||+|.+
T Consensus       190 ~~~~D~Vi~~~p~~~~~~l~~a~~~lk~gG~ih~  223 (278)
T 3k6r_A          190 ENIADRILMGYVVRTHEFIPKALSIAKDGAIIHY  223 (278)
T ss_dssp             CSCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEE
T ss_pred             ccCCCEEEECCCCcHHHHHHHHHHHcCCCCEEEE
Confidence            4569999999877789999999999999999965

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=92.92  E-value=0.1  Score=36.19  Aligned_cols=38  Identities=21%  Similarity=0.203  Sum_probs=32.9

Q ss_pred             CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127           8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTD   45 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD   45 (75)
                      .+.||+|=+||-.+...|++.+.+.+++||++.+...-
T Consensus       190 ~~~fD~Vi~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          190 ENIADRILMGYVVRTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             CSCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCCccEEEECCchhHHHHHHHHHHHCCCCeEEEEEEee
Confidence            45799999999888889999999999999999886543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=92.67  E-value=0.11  Score=35.90  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=33.7

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCc
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDM   46 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~   46 (75)
                      +.||+|=+||--....+++.+++.++.||++.+++.-.
T Consensus       185 ~~~D~Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          185 DVADRVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             TCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCceEEEECCcccHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            46999999998668899999999999999999988754

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=91.96  E-value=0.12  Score=37.33  Aligned_cols=42  Identities=31%  Similarity=0.341  Sum_probs=33.3

Q ss_pred             CCCCceeeeCC--CCCc------------hhhHHHHHHhcccCcEEEEEecCcccc
Q psy4127           8 GRHFDAIDLDP--FGNP------------TRFLDAAVSSLRDGGLLLVTCTDMAVL   49 (75)
Q Consensus         8 ~~~fD~IDlDP--fGSp------------~pfldsA~~av~~gGll~vTaTD~a~L   49 (75)
                      .+.||+|=+||  ||..            ..++..+.+.+++||++.++++-...+
T Consensus       223 ~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~  278 (332)
T 2igt_A          223 GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRA  278 (332)
T ss_dssp             TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTS
T ss_pred             CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCC
Confidence            45799999998  5532            478999999999999988888765544

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=89.49  E-value=0.37  Score=29.46  Aligned_cols=41  Identities=15%  Similarity=0.311  Sum_probs=31.7

Q ss_pred             CCCceeeeCC-C-CCchhhHHHHH--HhcccCcEEEEEecCcccc
Q psy4127           9 RHFDAIDLDP-F-GNPTRFLDAAV--SSLRDGGLLLVTCTDMAVL   49 (75)
Q Consensus         9 ~~fD~IDlDP-f-GSp~pfldsA~--~av~~gGll~vTaTD~a~L   49 (75)
                      +.||+|=.|| | +....+++...  +.+++||.+.++......+
T Consensus       109 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~  153 (171)
T 1ws6_A          109 ERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYL  153 (171)
T ss_dssp             CCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred             CceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence            3699999997 7 55667787777  8899999999877655443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=88.04  E-value=0.46  Score=34.32  Aligned_cols=37  Identities=32%  Similarity=0.597  Sum_probs=29.4

Q ss_pred             CCCCceeeeCC--CCCc-----------hhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDP--FGNP-----------TRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDP--fGSp-----------~pfldsA~~av~~gGll~vTaT   44 (75)
                      .+.||+|=+||  |+..           ..++..+.+.+++||+|.+++-
T Consensus       277 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          277 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            45799999998  4421           3588899999999999888653

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=87.52  E-value=0.53  Score=33.54  Aligned_cols=36  Identities=14%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      +.||+|=+||--....+++.+++.++.||+|.+.+-
T Consensus       257 ~~fD~Vi~dpP~~~~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          257 VKGNRVIMNLPKFAHKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             CCEEEEEECCTTTGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcEEEECCcHhHHHHHHHHHHHcCCCCEEEEEEe
Confidence            469999999555567999999999999998877543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=86.82  E-value=1.2  Score=28.27  Aligned_cols=38  Identities=21%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             CCCCceeeeCC-CCCc----hhhHHHHHH--hcccCcEEEEEecC
Q psy4127           8 GRHFDAIDLDP-FGNP----TRFLDAAVS--SLRDGGLLLVTCTD   45 (75)
Q Consensus         8 ~~~fD~IDlDP-fGSp----~pfldsA~~--av~~gGll~vTaTD   45 (75)
                      .+.||+|=.|| |...    ..++....+  .++.||++.+....
T Consensus       111 ~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          111 TSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             SSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             CCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            46799999995 8763    456666666  89999999997643

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=86.46  E-value=0.58  Score=32.52  Aligned_cols=37  Identities=19%  Similarity=0.463  Sum_probs=30.2

Q ss_pred             CCCCceeeeCCCCC--c------hhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDPFGN--P------TRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDPfGS--p------~pfldsA~~av~~gGll~vTaT   44 (75)
                      ++.||+|=+|++-.  |      ..|++.+.+.+++||++.+...
T Consensus       146 ~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (275)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            45799999998752  1      5799999999999999998753

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=85.24  E-value=1.2  Score=30.19  Aligned_cols=37  Identities=19%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             CCCCceeeeCC-CCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDP-FGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDP-fGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      .+.||+|=+|. ......|++.+.+.++.||+|.+.-+
T Consensus       154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             CCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            35799999886 34457899999999999999988544

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=85.20  E-value=0.61  Score=34.51  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=26.3

Q ss_pred             CCceeeeCCCCC-------------chhhHHHHHHhcccCcEEEEEe
Q psy4127          10 HFDAIDLDPFGN-------------PTRFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus        10 ~fD~IDlDPfGS-------------p~pfldsA~~av~~gGll~vTa   43 (75)
                      .||+|=+||=--             -..++..|++.+++||+|.+.+
T Consensus       280 ~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s  326 (393)
T 4dmg_A          280 PFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSS  326 (393)
T ss_dssp             CEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            499999998210             1378999999999999997443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=85.02  E-value=1.5  Score=27.94  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             CCCceeeeCC-CCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           9 RHFDAIDLDP-FGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         9 ~~fD~IDlDP-fGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      +.||+|=++. ++.+..+++.+.+.++.||.+.++..
T Consensus       107 ~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          107 PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             CCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            4699998876 56678899999999999999999754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=84.87  E-value=0.64  Score=31.88  Aligned_cols=40  Identities=20%  Similarity=0.407  Sum_probs=29.3

Q ss_pred             cCCCCceeeeCC-CCCc-----------------hhhHHHHHHhcccCcEEEEEecCc
Q psy4127           7 RGRHFDAIDLDP-FGNP-----------------TRFLDAAVSSLRDGGLLLVTCTDM   46 (75)
Q Consensus         7 ~~~~fD~IDlDP-fGSp-----------------~pfldsA~~av~~gGll~vTaTD~   46 (75)
                      ..+.||+|=+|| |+..                 ...|..+.+.++++|.+.|...|-
T Consensus        20 ~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~   77 (260)
T 1g60_A           20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF   77 (260)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH
T ss_pred             cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcH
Confidence            345799999997 7755                 134455567899999999987654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=84.23  E-value=2.1  Score=27.84  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=29.8

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      +.||+|=.|+ +.|..+++.+.+.++.||.+.+..-
T Consensus       157 ~~~D~v~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          157 GIFHAAFVDV-REPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             TCBSEEEECS-SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             CcccEEEECC-cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            4699998876 4688999999999999999988664

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=83.87  E-value=0.94  Score=30.29  Aligned_cols=38  Identities=21%  Similarity=0.212  Sum_probs=29.8

Q ss_pred             CCCCceeeeCCCC-CchhhHHHHHHhcccCcEEEEEecC
Q psy4127           8 GRHFDAIDLDPFG-NPTRFLDAAVSSLRDGGLLLVTCTD   45 (75)
Q Consensus         8 ~~~fD~IDlDPfG-Sp~pfldsA~~av~~gGll~vTaTD   45 (75)
                      .+.||+|=+|+-- ....|++.+.+.++.||+|.+.-+.
T Consensus       127 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          127 NDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             TTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             CCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            4679999988643 3346999999999999999985443

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=83.73  E-value=0.79  Score=29.69  Aligned_cols=35  Identities=29%  Similarity=0.422  Sum_probs=28.9

Q ss_pred             CCCceeeeCCC-CCchhhHHHHHHhcccCcEEEEEe
Q psy4127           9 RHFDAIDLDPF-GNPTRFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus         9 ~~fD~IDlDPf-GSp~pfldsA~~av~~gGll~vTa   43 (75)
                      +.||+|=+|+- .....+++.+.+.++.||+|.+.-
T Consensus       144 ~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          144 GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             TCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            57999999974 334679999999999999999854

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=83.18  E-value=2.4  Score=25.94  Aligned_cols=36  Identities=22%  Similarity=0.141  Sum_probs=28.8

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      +.||+|=+..--....+++.+.+.++.||.+.++.-
T Consensus        93 ~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           93 DNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             SCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence            579999876644446799999999999999998753

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=83.16  E-value=0.78  Score=29.66  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             CCCceeeeCCCCC-chhhHHHHHHhcccCcEEEEEecC
Q psy4127           9 RHFDAIDLDPFGN-PTRFLDAAVSSLRDGGLLLVTCTD   45 (75)
Q Consensus         9 ~~fD~IDlDPfGS-p~pfldsA~~av~~gGll~vTaTD   45 (75)
                      +.||+|=+|+--. ...+++.+.+.++.||+|.+.-..
T Consensus       139 ~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          139 WQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            5799999998643 567899999999999999986554

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=82.58  E-value=1.4  Score=31.28  Aligned_cols=40  Identities=15%  Similarity=0.238  Sum_probs=31.3

Q ss_pred             cCCCCceeeeCC-CCCc-----------------hhhHHHHHHhcccCcEEEEEecCc
Q psy4127           7 RGRHFDAIDLDP-FGNP-----------------TRFLDAAVSSLRDGGLLLVTCTDM   46 (75)
Q Consensus         7 ~~~~fD~IDlDP-fGSp-----------------~pfldsA~~av~~gGll~vTaTD~   46 (75)
                      ..+.||.|=+|| |+..                 .+.|..+.+.+++||.|++...|.
T Consensus        30 ~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           30 PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            356799999996 8764                 244566678899999999998875

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=82.30  E-value=1.3  Score=29.89  Aligned_cols=35  Identities=29%  Similarity=0.592  Sum_probs=30.0

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      +.||+|=+|+ ..|..+|+.+.+.++.||.|.+...
T Consensus       180 ~~~D~V~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          180 KDVDALFLDV-PDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CSEEEEEECC-SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             CccCEEEECC-cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            4699999987 4578999999999999999988653

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=82.27  E-value=1.1  Score=32.57  Aligned_cols=39  Identities=31%  Similarity=0.528  Sum_probs=31.6

Q ss_pred             CCCCceeeeCCCCC---c-----hhhHHHHHHhcccCcEEEEEecCc
Q psy4127           8 GRHFDAIDLDPFGN---P-----TRFLDAAVSSLRDGGLLLVTCTDM   46 (75)
Q Consensus         8 ~~~fD~IDlDPfGS---p-----~pfldsA~~av~~gGll~vTaTD~   46 (75)
                      .+.||+|=+|.|..   |     ..|++.+.+.++.||++.+...+.
T Consensus       157 ~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~  203 (317)
T 3gjy_A          157 PASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH  203 (317)
T ss_dssp             TTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             CCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            46799999987643   2     478999999999999999888653

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=82.10  E-value=0.85  Score=31.98  Aligned_cols=36  Identities=22%  Similarity=0.407  Sum_probs=28.0

Q ss_pred             CCCCceeeeCCCCC----c-----hhhHHHHHHhcccCcEEEEEe
Q psy4127           8 GRHFDAIDLDPFGN----P-----TRFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus         8 ~~~fD~IDlDPfGS----p-----~pfldsA~~av~~gGll~vTa   43 (75)
                      .+.||+|=+|++-.    +     ..|++.+.+.+++||++.+..
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            45799999887531    1     578999999999999999974

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=81.95  E-value=1.5  Score=28.82  Aligned_cols=36  Identities=25%  Similarity=0.483  Sum_probs=30.3

Q ss_pred             CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      .+.||+|=+|+ ..+..+++.+.+.++.||.+.+...
T Consensus       160 ~~~~D~v~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          160 EENVDHVILDL-PQPERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             CCSEEEEEECS-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCcCEEEECC-CCHHHHHHHHHHHcCCCCEEEEEEC
Confidence            34699999987 4577899999999999999998754

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=81.13  E-value=1.9  Score=28.90  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=29.4

Q ss_pred             CCCceeeeCCCC-CchhhHHHHHHhcccCcEEEEEecC
Q psy4127           9 RHFDAIDLDPFG-NPTRFLDAAVSSLRDGGLLLVTCTD   45 (75)
Q Consensus         9 ~~fD~IDlDPfG-Sp~pfldsA~~av~~gGll~vTaTD   45 (75)
                      +.||+|=+|.-- ...+|++.+.+.+|.||+|.+..+.
T Consensus       135 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          135 PAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             CCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            379999888643 2247899999999999999987654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=80.95  E-value=2.1  Score=27.62  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=29.9

Q ss_pred             CCCceeeeCCCCC-chhhHHHHHHhcccCcEEEEEecCc
Q psy4127           9 RHFDAIDLDPFGN-PTRFLDAAVSSLRDGGLLLVTCTDM   46 (75)
Q Consensus         9 ~~fD~IDlDPfGS-p~pfldsA~~av~~gGll~vTaTD~   46 (75)
                      +.||+|=+|+--. ...+++.+.+.++.||+|.+.....
T Consensus       132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          132 EPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             CCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            4699999997632 2578999999999999999865543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=80.85  E-value=1.3  Score=31.29  Aligned_cols=37  Identities=16%  Similarity=0.290  Sum_probs=30.0

Q ss_pred             CCCCceeeeCCCCCc-----------hhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDPFGNP-----------TRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp-----------~pfldsA~~av~~gGll~vTaT   44 (75)
                      .+.||+|=+|++-.-           ..|++.+.+.++.||++.+...
T Consensus       149 ~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            457999998876421           4789999999999999999754

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=80.80  E-value=2.6  Score=27.45  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=29.6

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCc
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDM   46 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~   46 (75)
                      +.||+|=+++-..+. +++.+.+.++.||.+.++....
T Consensus       121 ~~~D~v~~~~~~~~~-~l~~~~~~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          121 PLPEAVFIGGGGSQA-LYDRLWEWLAPGTRIVANAVTL  157 (204)
T ss_dssp             CCCSEEEECSCCCHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred             CCCCEEEECCcccHH-HHHHHHHhcCCCcEEEEEecCc
Confidence            369999998843333 9999999999999999976543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=80.29  E-value=1.9  Score=28.68  Aligned_cols=40  Identities=25%  Similarity=0.459  Sum_probs=29.9

Q ss_pred             CCCCceeee---CCCCCch---------hhHHHHHHhcccCcEEEEEecCccc
Q psy4127           8 GRHFDAIDL---DPFGNPT---------RFLDAAVSSLRDGGLLLVTCTDMAV   48 (75)
Q Consensus         8 ~~~fD~IDl---DPfGSp~---------pfldsA~~av~~gGll~vTaTD~a~   48 (75)
                      .+.||.|-+   ||+-...         .|++.+.+.+|.||.+.+. ||...
T Consensus       103 ~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~-td~~~  154 (218)
T 3dxy_A          103 DNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA-TDWEP  154 (218)
T ss_dssp             TTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE-ESCHH
T ss_pred             CCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE-eCCHH
Confidence            456888887   7765332         4999999999999999885 55443

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=80.28  E-value=1.4  Score=28.79  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      +.||+|=+|+ ..+..+|+.+.+.++.||.+.+...
T Consensus       165 ~~~D~v~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          165 AAYDGVALDL-MEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             TCEEEEEEES-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCcCEEEECC-cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            4699998876 5678999999999999999998764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=80.19  E-value=1.1  Score=34.04  Aligned_cols=37  Identities=35%  Similarity=0.571  Sum_probs=27.4

Q ss_pred             CCCCceeeeCCC--CCch------------------------hhHHHHHHhcccCcEE-EEEec
Q psy4127           8 GRHFDAIDLDPF--GNPT------------------------RFLDAAVSSLRDGGLL-LVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDPf--GSp~------------------------pfldsA~~av~~gGll-~vTaT   44 (75)
                      .+.||.|=+||=  |+-+                        .+|+.|.+.||.||.| +.|||
T Consensus       173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  236 (456)
T 3m4x_A          173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT  236 (456)
T ss_dssp             TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred             cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence            357999999973  2111                        6799999999999965 45665

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=80.06  E-value=1  Score=32.55  Aligned_cols=37  Identities=35%  Similarity=0.561  Sum_probs=29.1

Q ss_pred             CCCCceeeeCC--CC-----------CchhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDP--FG-----------NPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDP--fG-----------Sp~pfldsA~~av~~gGll~vTaT   44 (75)
                      .+.||+|=+||  |+           ....++..+++.++.||+|.+++-
T Consensus       291 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          291 GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            35799999997  22           124788899999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	5e-22

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 84.7 bits (209), Expect = 5e-22
 Identities = 36/69 (52%), Positives = 43/69 (62%)

Query: 7   RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
           R R+F  IDLDPFG+P  FLD A+ S +  G+L VT TD A LCG  P  C  KY AV L
Sbjct: 126 RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPL 185

Query: 67  KTAACHEMP 75
           +   CHE+ 
Sbjct: 186 RGELCHEVG 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.97
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	93.93
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	90.09
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	89.28
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	88.45
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	88.15
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	86.75
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	84.14
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	81.96
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	81.75
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	81.38
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	81.22

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=4.4e-33  Score=207.70  Aligned_cols=69  Identities=52%  Similarity=0.867  Sum_probs=66.4

Q ss_pred             cCCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccCCCCccCCC
Q psy4127           7 RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEMP   75 (75)
Q Consensus         7 ~~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~~   75 (75)
                      ++++||+|||||||||+||||+|++++++||+|+|||||+++|||++|++|+||||+.+++++++||++
T Consensus       126 ~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~g  194 (375)
T d2dula1         126 RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEVG  194 (375)
T ss_dssp             STTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHH
T ss_pred             hcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecCchhhcCCCcHHHHHHhCCeecCCcccchHH
Confidence            356799999999999999999999999999999999999999999999999999999999999999974

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.93  E-value=0.022  Score=38.54  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=30.5

Q ss_pred             CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEE
Q psy4127           8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVT   42 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vT   42 (75)
                      +..||.|=++|..+...||+.|++.+++||+|.+.
T Consensus       172 ~~~~D~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         172 ENIADRILMGYVVRTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             CSCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCEEEECCCCchHHHHHHHHhhcCCCCEEEEE
Confidence            35699999988777899999999999999999654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.089  Score=34.63  Aligned_cols=41  Identities=24%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CCCCceeeeCCCCC-chhhHHHHHHhcccCcEEEEEecCcccccC
Q psy4127           8 GRHFDAIDLDPFGN-PTRFLDAAVSSLRDGGLLLVTCTDMAVLCG   51 (75)
Q Consensus         8 ~~~fD~IDlDPfGS-p~pfldsA~~av~~gGll~vTaTD~a~L~G   51 (75)
                      .+.||+|.+|-=-+ -..+++.+++.+++||+|.+   |-..+.|
T Consensus       133 ~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~---Dn~l~~G  174 (219)
T d2avda1         133 AGTFDVAVVDADKENCSAYYERCLQLLRPGGILAV---LRVLWRG  174 (219)
T ss_dssp             TTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEE---ECCSGGG
T ss_pred             cCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEE---eCCcccC
Confidence            45799999984333 35778999999999999998   4444444

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=89.28  E-value=0.16  Score=34.75  Aligned_cols=36  Identities=33%  Similarity=0.618  Sum_probs=26.9

Q ss_pred             CCCCceeeeCC--CCCch-----------hhHHHHHHhcccCcEEEEEe
Q psy4127           8 GRHFDAIDLDP--FGNPT-----------RFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus         8 ~~~fD~IDlDP--fGSp~-----------pfldsA~~av~~gGll~vTa   43 (75)
                      .++||+|=+||  |+...           ..+..|++.|++||+|.+++
T Consensus       213 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s  261 (318)
T d1wxxa2         213 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS  261 (318)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            46899999998  54433           25667888999999986643

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=88.45  E-value=0.18  Score=31.38  Aligned_cols=54  Identities=17%  Similarity=0.306  Sum_probs=33.2

Q ss_pred             cCCCCceeeeCC-CCCc-hhhHHHHHH--hcccCcEEEEEecCcccccCCChhHHHHHhcCc
Q psy4127           7 RGRHFDAIDLDP-FGNP-TRFLDAAVS--SLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAV   64 (75)
Q Consensus         7 ~~~~fD~IDlDP-fGSp-~pfldsA~~--av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~   64 (75)
                      ..++||+|-+|| |+.. ...+...++  .+++||++.+...--..+    +-...|+||..
T Consensus       107 ~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~~~~l----~l~~~r~YG~t  164 (171)
T d1ws6a1         107 QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYL----PLGERRVYGEN  164 (171)
T ss_dssp             TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC----TTSEEEEETTE
T ss_pred             cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecCCCCC----CcCcEEecCCE
Confidence            346799999996 7654 234444443  489999998854322222    22234788864

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=88.15  E-value=0.17  Score=34.87  Aligned_cols=37  Identities=22%  Similarity=0.537  Sum_probs=27.4

Q ss_pred             cCCCCceeeeCC--CCCc-----------hhhHHHHHHhcccCcEEEEEe
Q psy4127           7 RGRHFDAIDLDP--FGNP-----------TRFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus         7 ~~~~fD~IDlDP--fGSp-----------~pfldsA~~av~~gGll~vTa   43 (75)
                      ..++||+|=+||  |+.-           ...+..|++.|++||+|.+++
T Consensus       214 ~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         214 HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            346899999997  2210           147888999999999998755

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=86.75  E-value=0.19  Score=34.67  Aligned_cols=37  Identities=19%  Similarity=0.403  Sum_probs=28.6

Q ss_pred             cCCCCceeeeCC---CCCc--------hhhHHHHHHhcccCcEEEEEe
Q psy4127           7 RGRHFDAIDLDP---FGNP--------TRFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus         7 ~~~~fD~IDlDP---fGSp--------~pfldsA~~av~~gGll~vTa   43 (75)
                      .+++||+|=+|+   +|..        ..|+..+-+.+++||++++.+
T Consensus       148 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            356799997665   6632        258899999999999998865

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=84.14  E-value=0.44  Score=31.83  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      ++.||.|=+|. ..|..+|+.+.+++|.||.|++...
T Consensus       152 ~~~fD~V~ld~-p~p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         152 DQMYDAVIADI-PDPWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             SCCEEEEEECC-SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             cceeeeeeecC-CchHHHHHHHHHhcCCCceEEEEeC
Confidence            45699998884 5688899999999999999988543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.96  E-value=0.47  Score=32.28  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=27.2

Q ss_pred             CCCCceeeeCCCCC--c-----------hhhHHHHHHhcccCcEEEEEe
Q psy4127           8 GRHFDAIDLDPFGN--P-----------TRFLDAAVSSLRDGGLLLVTC   43 (75)
Q Consensus         8 ~~~fD~IDlDPfGS--p-----------~pfldsA~~av~~gGll~vTa   43 (75)
                      .++||+|=+||=-.  .           ..++..|++.|++||+|.+++
T Consensus       215 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         215 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            46899999998321  1           227889999999999877654

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=81.75  E-value=0.77  Score=29.17  Aligned_cols=39  Identities=21%  Similarity=0.053  Sum_probs=33.2

Q ss_pred             CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccc
Q psy4127           9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVL   49 (75)
Q Consensus         9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L   49 (75)
                      .-||+|++-+|=+|..++++|.+.=.  -+++++++++..+
T Consensus        64 ~G~eVi~lg~~~~~e~iv~aa~~~~a--dvI~iSs~~~~~~  102 (168)
T d7reqa2          64 LGFDVDVGPLFQTPEETARQAVEADV--HVVGVSSLAGGHL  102 (168)
T ss_dssp             TTCEEEECCTTBCHHHHHHHHHHHTC--SEEEEEECSSCHH
T ss_pred             CCcceecCCCcCcHHHHHHHHHccCC--CEEEEecCcccch
Confidence            35999999999999999999998844  4999998877654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=81.38  E-value=0.69  Score=30.87  Aligned_cols=36  Identities=28%  Similarity=0.568  Sum_probs=30.5

Q ss_pred             CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT   44 (75)
                      ...||.|-+|- ..|..+|+.+.+.+|.||.|++.+.
T Consensus       170 ~~~~D~V~~d~-p~p~~~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         170 EKDVDALFLDV-PDPWNYIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             CCSEEEEEECC-SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccceeeeEecC-CCHHHHHHHHHhhcCCCCEEEEEeC
Confidence            34689888884 6688999999999999999998764

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=81.22  E-value=0.96  Score=29.60  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=29.6

Q ss_pred             CCCCceeeeCCCCCc-hhhHHHHHHhcccCcEEEEEec
Q psy4127           8 GRHFDAIDLDPFGNP-TRFLDAAVSSLRDGGLLLVTCT   44 (75)
Q Consensus         8 ~~~fD~IDlDPfGSp-~pfldsA~~av~~gGll~vTaT   44 (75)
                      .+.||+|-||---+- ..|++.+++.+++||+|.+--+
T Consensus       134 ~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         134 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             CCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccC
Confidence            346999988855443 5799999999999999998644