Psyllid ID: psy4181

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ
Secondary Structure (PSIPRED)
cEEEEEccccccEEEEEccccccHHHHHHHHHHHHcccccEEEEEEEcEEccccEEEcccEEEccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccEEEEEccccccHHHHHHHHHHHHcccccEEEEEcccccccccEEEcccEEccccEEEEEEc
Coil and Loop (DISEMBL)
mieitcndrlgkkvrvkcnpddtiGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYeihdgmnlelyyq
Flexible Loop (DISEMBL)
mieitcndrlgkkvrvkcnpddtigdLKKLiaaqtgtrwekivlKKWYTIFKDHIRIMDYEIHDGMNLELYYQ
Low Complexity Region (SEG)
MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ
Disordered region (IsUnstruct)
****TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY*
Disordered Region (DISOPRED)
MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ
Disordered Region (DISEMBL)
MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ
Disordered Region (DISPRO)
MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
Q9V998	73	Ubiquitin-like protein 5	yes	N/A	1.0	1.0	0.931	3e-33
Q791B0	73	Ubiquitin-like protein 5	N/A	N/A	1.0	1.0	0.890	9e-33
Q9EPV8	73	Ubiquitin-like protein 5	yes	N/A	1.0	1.0	0.890	9e-33
Q6EGX7	73	Ubiquitin-like protein 5	N/A	N/A	1.0	1.0	0.890	9e-33
Q9BZL1	73	Ubiquitin-like protein 5	yes	N/A	1.0	1.0	0.890	9e-33
Q3T0Z3	73	Ubiquitin-like protein 5	yes	N/A	1.0	1.0	0.890	9e-33
P91302	73	Ubiquitin-like protein 5	yes	N/A	1.0	1.0	0.876	2e-32
Q7SXF2	73	Ubiquitin-like protein 5	yes	N/A	0.986	0.986	0.875	6e-32
Q9FGZ9	73	Ubiquitin-like protein 5	yes	N/A	1.0	1.0	0.780	2e-27
O94650	73	Ubiquitin-like modifier h	yes	N/A	1.0	1.0	0.726	5e-27

>sp|Q9V998|UBL5_DROME Ubiquitin-like protein 5 OS=Drosophila melanogaster GN=ubl PE=3 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/73 (93%), Positives = 70/73 (95%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGT+ EKIVLKKWYTIFKD IR+ DY
Sbjct: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTKHEKIVLKKWYTIFKDPIRLSDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Drosophila melanogaster (taxid: 7227)

>sp|Q791B0|UBL5_PSAOB Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1

 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Psammomys obesus (taxid: 48139)

>sp|Q9EPV8|UBL5_MOUSE Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1

 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Mus musculus (taxid: 10090)

>sp|Q6EGX7|UBL5_MESAU Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1

 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Mesocricetus auratus (taxid: 10036)

>sp|Q9BZL1|UBL5_HUMAN Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 PE=1 SV=1

 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Homo sapiens (taxid: 9606)

>sp|Q3T0Z3|UBL5_BOVIN Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1

 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Bos taurus (taxid: 9913)

>sp|P91302|UBL5_CAEEL Ubiquitin-like protein 5 OS=Caenorhabditis elegans GN=ubl-5 PE=3 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 68/73 (93%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIEIT NDRLGKKVR+KCNP DTIGDLKKLIAAQTGTRWEKIVLKKWYTI+KDHI +MDY
Sbjct: 1  MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIH+G N ELYYQ
Sbjct: 61 EIHEGFNFELYYQ 73

Caenorhabditis elegans (taxid: 6239)

>sp|Q7SXF2|UBL5_DANRE Ubiquitin-like protein 5 OS=Danio rerio GN=ubl5 PE=3 SV=1

 Score =  135 bits (340), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 63/72 (87%), Positives = 68/72 (94%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+ CNDRLGKKVRVKCN +DTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK+H+ + DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNQEDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKNHVSLGDY 60

Query: 61 EIHDGMNLELYY 72
          EIHDGMNLELYY
Sbjct: 61 EIHDGMNLELYY 72

Danio rerio (taxid: 7955)

>sp|Q9FGZ9|UBL5_ARATH Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=1 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 63/73 (86%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+  NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR EKI ++KWY I+KDHI + DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGM LELYY 
Sbjct: 61 EIHDGMGLELYYN 73

Arabidopsis thaliana (taxid: 3702)

>sp|O94650|HUB1_SCHPO Ubiquitin-like modifier hub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hub1 PE=1 SV=1

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 64/73 (87%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+ CNDRLGKKVRVKC PDDT+GD KKL+AAQTGT   +IVLKKW+++FKD+I + DY
Sbjct: 1  MIEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGM+LE+YY 
Sbjct: 61 EIHDGMSLEMYYS 73

Forms a conjugate with snu66 and facilitates its localization to the nucleus. Involved in morphogenesis. Required for efficient splicing of pre-mRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
321477907	73	hypothetical protein DAPPUDRAFT_95804 [D	1.0	1.0	0.945	4e-33
242009222	73	conserved hypothetical protein [Pediculu	1.0	1.0	0.917	4e-33
340711471	73	PREDICTED: ubiquitin-like protein 5-like	1.0	1.0	0.931	6e-33
307210161	73	Ubiquitin-like protein 5 [Harpegnathos s	1.0	1.0	0.904	9e-33
340374832	73	PREDICTED: ubiquitin-like protein 5-like	1.0	1.0	0.931	9e-33
110755004	73	PREDICTED: ubiquitin like [Apis mellifer	1.0	1.0	0.917	2e-32
156542801	73	PREDICTED: ubiquitin-like protein 5-like	1.0	1.0	0.917	2e-32
346470261	73	hypothetical protein [Amblyomma maculatu	1.0	1.0	0.917	2e-32
91078218	73	PREDICTED: similar to predicted protein	1.0	1.0	0.904	2e-32
357622113	73	hypothetical protein KGM_17710 [Danaus p	1.0	1.0	0.876	3e-32

>gi|321477907|gb|EFX88865.1| hypothetical protein DAPPUDRAFT_95804 [Daphnia pulex]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/73 (94%), Positives = 72/73 (98%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI+KDHI++ DY
Sbjct: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHIKLEDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009222|ref|XP_002425390.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509184|gb|EEB12652.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/73 (91%), Positives = 73/73 (100%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          M+E+TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW+KIVLKKWYTIFKDHI+++DY
Sbjct: 1  MLEVTCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWDKIVLKKWYTIFKDHIKLVDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711471|ref|XP_003394299.1| PREDICTED: ubiquitin-like protein 5-like [Bombus terrestris] gi|350416258|ref|XP_003490890.1| PREDICTED: ubiquitin-like protein 5-like [Bombus impatiens] gi|383848591|ref|XP_003699932.1| PREDICTED: ubiquitin-like protein 5-like [Megachile rotundata] gi|307168552|gb|EFN61610.1| Ubiquitin-like protein 5 [Camponotus floridanus] gi|332030516|gb|EGI70204.1| Ubiquitin-like protein 5 [Acromyrmex echinatior]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/73 (93%), Positives = 71/73 (97%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          M+EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGT WEKIVLKKWYTIFKDHI++ DY
Sbjct: 1  MLEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTHWEKIVLKKWYTIFKDHIKLQDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210161|gb|EFN86834.1| Ubiquitin-like protein 5 [Harpegnathos saltator]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 71/73 (97%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          M+EITCNDRLGKKVRVKCNPDDT+GDLKKLIAAQTGT WEKIVLKKWYTIFKDHI++ DY
Sbjct: 1  MLEITCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTHWEKIVLKKWYTIFKDHIKLQDY 60

Query: 61 EIHDGMNLELYYQ 73
          E+HDGMNLELYYQ
Sbjct: 61 EVHDGMNLELYYQ 73

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340374832|ref|XP_003385941.1| PREDICTED: ubiquitin-like protein 5-like [Amphimedon queenslandica]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 68/73 (93%), Positives = 71/73 (97%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW+KIVLKKWYT+FKDHI + DY
Sbjct: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWDKIVLKKWYTVFKDHITLEDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|110755004|ref|XP_001120009.1| PREDICTED: ubiquitin like [Apis mellifera] gi|380030074|ref|XP_003698683.1| PREDICTED: ubiquitin-like protein 5-like [Apis florea]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/73 (91%), Positives = 71/73 (97%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          M+EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGT WEKIVLKKWYTI+KDHI++ DY
Sbjct: 1  MLEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTHWEKIVLKKWYTIYKDHIKLQDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542801|ref|XP_001607481.1| PREDICTED: ubiquitin-like protein 5-like [Nasonia vitripennis]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/73 (91%), Positives = 70/73 (95%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIEITCNDRLGKKVRVKCNPDDT+GDLKKLIAAQTGT WEKIVLKKWY IFKDHI++ DY
Sbjct: 1  MIEITCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTHWEKIVLKKWYQIFKDHIKLQDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346470261|gb|AEO34975.1| hypothetical protein [Amblyomma maculatum]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/73 (91%), Positives = 72/73 (98%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW+KIVLKKWYT+FKD+I++ DY
Sbjct: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWDKIVLKKWYTVFKDNIKLEDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078218|ref|XP_969246.1| PREDICTED: similar to predicted protein [Tribolium castaneum] gi|270002984|gb|EEZ99431.1| hypothetical protein TcasGA2_TC030562 [Tribolium castaneum]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 71/73 (97%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIEITCNDRLGKKVRVKCNPDDT+GDLKKLIAAQTGT+W+KIVLKKWYT FKDHI++ DY
Sbjct: 1  MIEITCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTKWDKIVLKKWYTTFKDHIQLQDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622113|gb|EHJ73714.1| hypothetical protein KGM_17710 [Danaus plexippus]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 72/73 (98%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          M+E+TCNDRLGKKVRVKCNPDDT+GDLKKLIAAQTGTR++KIVLKKWYT+FKDHI++ DY
Sbjct: 1  MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLSDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
FB|FBgn0022224	73	ubl "ubiquitin like" [Drosophi	1.0	1.0	0.931	3.2e-33
UNIPROTKB|Q3T0Z3	73	UBL5 "Ubiquitin-like protein 5	1.0	1.0	0.890	5.2e-33
UNIPROTKB|Q9BZL1	73	UBL5 "Ubiquitin-like protein 5	1.0	1.0	0.890	5.2e-33
UNIPROTKB|B4F450	73	UBL5 "Ubiquitin-like protein 5	1.0	1.0	0.890	5.2e-33
MGI|MGI:1913427	73	Ubl5 "ubiquitin-like 5" [Mus m	1.0	1.0	0.890	5.2e-33
RGD|1564644	73	Ubl5 "ubiquitin-like 5" [Rattu	1.0	1.0	0.890	5.2e-33
UNIPROTKB|G3MY99	73	UBL5 "Ubiquitin-like protein 5	1.0	1.0	0.876	1.8e-32
WB|WBGene00006726	73	ubl-5 [Caenorhabditis elegans	1.0	1.0	0.876	1.8e-32
ZFIN|ZDB-GENE-040426-1629	73	zgc:66388 "zgc:66388" [Danio r	0.986	0.986	0.875	4.7e-32
TAIR|locus:2157597	73	UBL5 "AT5G42300" [Arabidopsis	0.986	0.986	0.791	8.2e-28

FB|FBgn0022224 ubl "ubiquitin like" [Drosophila melanogaster (taxid:7227)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 68/73 (93%), Positives = 70/73 (95%)

Query:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
             MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGT+ EKIVLKKWYTIFKD IR+ DY
Sbjct:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTKHEKIVLKKWYTIFKDPIRLSDY 60

Query:    61 EIHDGMNLELYYQ 73
             EIHDGMNLELYYQ
Sbjct:    61 EIHDGMNLELYYQ 73

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q3T0Z3 UBL5 "Ubiquitin-like protein 5" [Bos taurus (taxid:9913)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
             MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct:     1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query:    61 EIHDGMNLELYYQ 73
             EIHDGMNLELYYQ
Sbjct:    61 EIHDGMNLELYYQ 73

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9BZL1 UBL5 "Ubiquitin-like protein 5" [Homo sapiens (taxid:9606)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
             MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct:     1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query:    61 EIHDGMNLELYYQ 73
             EIHDGMNLELYYQ
Sbjct:    61 EIHDGMNLELYYQ 73

GO:0005737 "cytoplasm" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4F450 UBL5 "Ubiquitin-like protein 5" [Sus scrofa (taxid:9823)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
             MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct:     1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query:    61 EIHDGMNLELYYQ 73
             EIHDGMNLELYYQ
Sbjct:    61 EIHDGMNLELYYQ 73

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1913427 Ubl5 "ubiquitin-like 5" [Mus musculus (taxid:10090)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
             MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct:     1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query:    61 EIHDGMNLELYYQ 73
             EIHDGMNLELYYQ
Sbjct:    61 EIHDGMNLELYYQ 73

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0008150 "biological_process" evidence=ND

RGD|1564644 Ubl5 "ubiquitin-like 5" [Rattus norvegicus (taxid:10116)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
             MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct:     1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query:    61 EIHDGMNLELYYQ 73
             EIHDGMNLELYYQ
Sbjct:    61 EIHDGMNLELYYQ 73

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|G3MY99 UBL5 "Ubiquitin-like protein 5" [Bos taurus (taxid:9913)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 64/73 (87%), Positives = 67/73 (91%)

Query:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
             MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGT W KIVLKKWYTIFKDH+ + DY
Sbjct:     1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTHWNKIVLKKWYTIFKDHVSLGDY 60

Query:    61 EIHDGMNLELYYQ 73
             EIHDGMNLELYYQ
Sbjct:    61 EIHDGMNLELYYQ 73

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00006726 ubl-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 64/73 (87%), Positives = 68/73 (93%)

Query:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
             MIEIT NDRLGKKVR+KCNP DTIGDLKKLIAAQTGTRWEKIVLKKWYTI+KDHI +MDY
Sbjct:     1 MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDY 60

Query:    61 EIHDGMNLELYYQ 73
             EIH+G N ELYYQ
Sbjct:    61 EIHEGFNFELYYQ 73

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0034514 "mitochondrial unfolded protein response" evidence=IMP

ZFIN|ZDB-GENE-040426-1629 zgc:66388 "zgc:66388" [Danio rerio (taxid:7955)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 63/72 (87%), Positives = 68/72 (94%)

Query:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
             MIE+ CNDRLGKKVRVKCN +DTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK+H+ + DY
Sbjct:     1 MIEVVCNDRLGKKVRVKCNQEDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKNHVSLGDY 60

Query:    61 EIHDGMNLELYY 72
             EIHDGMNLELYY
Sbjct:    61 EIHDGMNLELYY 72

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2157597 UBL5 "AT5G42300" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 57/72 (79%), Positives = 63/72 (87%)

Query:     1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
             MIE+  NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR EKI ++KWY I+KDHI + DY
Sbjct:     1 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query:    61 EIHDGMNLELYY 72
             EIHDGM LELYY
Sbjct:    61 EIHDGMGLELYY 72

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EPV8	UBL5_MOUSE	No assigned EC number	0.8904	1.0	1.0	yes	N/A
Q6BUP7	HUB1_DEBHA	No assigned EC number	0.6575	1.0	1.0	yes	N/A
Q6Q546	HUB1_YEAST	No assigned EC number	0.5972	0.9863	0.9863	yes	N/A
Q9BZL1	UBL5_HUMAN	No assigned EC number	0.8904	1.0	1.0	yes	N/A
Q6FIX7	HUB1_CANGA	No assigned EC number	0.5890	1.0	1.0	yes	N/A
Q6EGX7	UBL5_MESAU	No assigned EC number	0.8904	1.0	1.0	N/A	N/A
O94650	HUB1_SCHPO	No assigned EC number	0.7260	1.0	1.0	yes	N/A
Q791B0	UBL5_PSAOB	No assigned EC number	0.8904	1.0	1.0	N/A	N/A
Q3T0Z3	UBL5_BOVIN	No assigned EC number	0.8904	1.0	1.0	yes	N/A
Q9V998	UBL5_DROME	No assigned EC number	0.9315	1.0	1.0	yes	N/A
P91302	UBL5_CAEEL	No assigned EC number	0.8767	1.0	1.0	yes	N/A
Q6CU12	HUB1_KLULA	No assigned EC number	0.6027	0.9863	0.9729	yes	N/A
Q756X3	HUB1_ASHGO	No assigned EC number	0.5833	0.9863	0.9863	yes	N/A
Q9FGZ9	UBL5_ARATH	No assigned EC number	0.7808	1.0	1.0	yes	N/A
Q7SXF2	UBL5_DANRE	No assigned EC number	0.875	0.9863	0.9863	yes	N/A
Q54Q03	UBL5_DICDI	No assigned EC number	0.6575	0.9178	1.0	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	73
cd01791	73	cd01791, Ubl5, UBL5 ubiquitin-like modifier	3e-48
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	7e-16
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	3e-08
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	0.002

>gnl|CDD|176386 cd01791, Ubl5, UBL5 ubiquitin-like modifier

 Score =  146 bits (370), Expect = 3e-48
 Identities = 67/73 (91%), Positives = 69/73 (94%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+ CNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR EKIVLKKWYTIFKDHI + DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDY 60

Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members. Length = 73

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 64.6 bits (158), Expect = 7e-16
 Identities = 25/69 (36%), Positives = 34/69 (49%)

Query: 5  TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHD 64
          T     GK   ++ +PDDT+ +LK  IAA+ G   E+  L     I KD   + DY I D
Sbjct: 1  TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 65 GMNLELYYQ 73
          G  L L  +
Sbjct: 61 GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 44.8 bits (106), Expect = 3e-08
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          GK V +      T+ DLK+ +A + G   E+  L     I  D + + DY + DG  L L
Sbjct: 7  GKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVL 66

Query: 71 YYQ 73
            +
Sbjct: 67 VPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 32.6 bits (75), Expect = 0.002
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK-----DHIRIMDYEIHDG 65
          GK + ++ +P DT+ +LK+ I  + G   ++  L     IF      D   + +Y I DG
Sbjct: 5  GKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRL-----IFSGKVLEDDTTLSEYGIQDG 59

Query: 66 MNLELY 71
            L L 
Sbjct: 60 STLHLV 65

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.98
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.96
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.96
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.96
PTZ00044	76	ubiquitin; Provisional	99.96
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.96
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.95
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.95
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.95
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.94
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.94
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.94
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.94
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.94
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.94
KOG0004|consensus	156		99.94
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.94
KOG0003|consensus	128		99.94
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.94
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.93
KOG0005|consensus	70		99.93
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.92
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.91
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.9
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.89
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.88
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.87
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.87
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.87
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.85
KOG0010|consensus	493		99.84
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.8
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.8
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.75
KOG0001|consensus	75		99.73
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.67
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.67
KOG0011|consensus	340		99.66
KOG3493|consensus	73		99.62
PLN02560	308	enoyl-CoA reductase	99.61
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	99.55
KOG4248|consensus	1143		99.53
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	99.48
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	99.39
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	99.36
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	99.36
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	99.11
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.95
KOG0006|consensus	446		98.78
KOG1872|consensus	473		98.67
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	98.55
KOG1769|consensus	99		98.51
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	98.38
KOG4495|consensus	110		98.36
PF13019	162	Telomere_Sde2: Telomere stability and silencing	98.32
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	98.3
KOG0013|consensus	231		98.28
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	98.28
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	97.82
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	97.69
KOG1639|consensus	297		97.57
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	97.57
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	97.49
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	97.42
KOG3206|consensus	234		97.37
PRK08364	70	sulfur carrier protein ThiS; Provisional	97.3
COG5417	81	Uncharacterized small protein [Function unknown]	97.13
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	97.08
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	97.03
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	97.03
PRK06437	67	hypothetical protein; Provisional	96.95
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	96.78
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	96.75
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	96.72
KOG4583|consensus	391		96.63
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	96.53
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	96.51
PF14453	57	ThiS-like: ThiS-like ubiquitin	96.47
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	96.39
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	96.1
smart00455	70	RBD Raf-like Ras-binding domain.	96.09
PRK06488	65	sulfur carrier protein ThiS; Validated	95.95
PF08337	539	Plexin_cytopl: Plexin cytoplasmic RasGAP domain; I	95.84
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	95.57
PRK06083	84	sulfur carrier protein ThiS; Provisional	95.54
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	95.51
PRK07440	70	hypothetical protein; Provisional	95.35
PRK05659	66	sulfur carrier protein ThiS; Validated	95.32
KOG0012|consensus	380		95.12
PRK05863	65	sulfur carrier protein ThiS; Provisional	95.12
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	94.97
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	94.97
TIGR02958	452	sec_mycoba_snm4 secretion protein snm4. Members of	94.87
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	94.87
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	94.82
PF14451	81	Ub-Mut7C: Mut7-C ubiquitin	94.74
KOG0007|consensus	341		94.65
PF12754	309	Blt1: Cell-cycle control medial ring component; In	94.42
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	94.32
PF06234	85	TmoB: Toluene-4-monooxygenase system protein B (Tm	94.05
PRK07696	67	sulfur carrier protein ThiS; Provisional	94.02
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	93.99
KOG4250|consensus	732		93.93
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	93.54
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	93.31
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	93.31
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	93.2
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	93.1
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	92.54
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	92.45
PRK08053	66	sulfur carrier protein ThiS; Provisional	92.34
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	92.13
cd01768	87	RA RA (Ras-associating) ubiquitin domain. The RA (	92.06
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	91.9
cd01817	73	RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS	91.86
PF00788	93	RA: Ras association (RalGDS/AF-6) domain; InterPro	91.84
COG5100	571	NPL4 Nuclear pore protein [Nuclear structure]	91.69
smart00144	108	PI3K_rbd PI3-kinase family, Ras-binding domain. Ce	91.27
smart00314	90	RA Ras association (RalGDS/AF-6) domain. RasGTP ef	91.16
PF14732	87	UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti	90.86
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	90.61
cd01787	85	GRB7_RA RA (RAS-associated like) domain of Grb7. G	90.45
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	90.43
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	90.21
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	90.0
PRK06944	65	sulfur carrier protein ThiS; Provisional	89.95
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	89.77
cd01777	87	SNX27_RA Ubiquitin domain of SNX27 (sorting nexin	89.73
PRK01777	95	hypothetical protein; Validated	89.09
cd01818	77	TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo	87.78
PF02505	153	MCR_D: Methyl-coenzyme M reductase operon protein	86.56
PF11834	69	DUF3354: Domain of unknown function (DUF3354); Int	86.45
cd01764	94	Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Rel	86.16
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	86.07
KOG3439|consensus	116		85.11
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	84.94
KOG2982|consensus	418		84.27
KOG2086|consensus	380		84.18
PTZ00380	121	microtubule-associated protein (MAP); Provisional	84.01
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	83.49
COG5272	57	UBI4 Ubiquitin [Posttranslational modification, pr	83.07
PF00794	106	PI3K_rbd: PI3-kinase family, ras-binding domain; I	81.51
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	81.45

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.98  E-value=2.4e-32  Score=160.47  Aligned_cols=73  Identities=92%  Similarity=1.419  Sum_probs=72.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||.|+||++.|+.+.++|+|++||++||++|+++.|+||++|||+|+|++|+|+.||++|||++|+||||+||
T Consensus         1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~~   73 (73)
T cd01791           1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYYQ   73 (73)
T ss_pred             CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEeC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999997

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.96  E-value=6.6e-30  Score=148.85  Aligned_cols=72  Identities=21%  Similarity=0.272  Sum_probs=70.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+.+|++++++|++++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|++|||.-|
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~   72 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVR   72 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEc
Confidence            799999999999999999999999999999999999999999999999999999999999999999999754

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.96  E-value=1.3e-29  Score=147.71  Aligned_cols=70  Identities=16%  Similarity=0.180  Sum_probs=67.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||||||+  +++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++++||||+.|
T Consensus         1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01793           1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGR   70 (74)
T ss_pred             CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence            7999998  589999999999999999999999999999999999999999999999999999999999864

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.96  E-value=7.4e-29  Score=146.93  Aligned_cols=71  Identities=17%  Similarity=0.096  Sum_probs=68.2

Q ss_pred             EEEEEEcCCCCE-EEEE-eCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKK-VRVK-CNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~-~~v~-v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ||||||+++|++ ++++ ++|++||++||++|++++|+|+++|||+|+||+|+|+.||++|||++|++|||.-
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~   73 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLV   73 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEE
Confidence            899999999997 6895 8999999999999999999999999999999999999999999999999999974

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>PTZ00044 ubiquitin; Provisional

Probab=99.96  E-value=1.3e-28  Score=143.23  Aligned_cols=71  Identities=21%  Similarity=0.371  Sum_probs=69.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ||||||+++|+++++++++++||++||++|+++.|+|+++|||+|+|++|+|+.+|++|+|++|++|||..
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~   71 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVL   71 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999975

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.96  E-value=1.6e-28  Score=141.56  Aligned_cols=70  Identities=16%  Similarity=0.246  Sum_probs=68.5

Q ss_pred             EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||||++.|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|+||||+.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999875

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.95  E-value=1.7e-28  Score=142.99  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=68.2

Q ss_pred             EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||||++.|++++++|+|++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|||++|+||||..+
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLR   70 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999864

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.95  E-value=4.2e-28  Score=150.38  Aligned_cols=72  Identities=21%  Similarity=0.254  Sum_probs=70.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+||||++.|++++++|++++||.+||++|++++|+|+++|||+|+|++|+|+.+|++|||++|+||||+.+
T Consensus        28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~   99 (103)
T cd01802          28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLA   99 (103)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999753

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.95  E-value=2.1e-27  Score=138.25  Aligned_cols=68  Identities=21%  Similarity=0.258  Sum_probs=65.9

Q ss_pred             EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +.||.++|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|+||||.
T Consensus         1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~   68 (70)
T cd01794           1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI   68 (70)
T ss_pred             CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence            36899999999999999999999999999999999999999999999999999999999999999985

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.94  E-value=6.6e-27  Score=135.23  Aligned_cols=71  Identities=23%  Similarity=0.343  Sum_probs=68.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|+. ++++++++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|+||||+.+
T Consensus         1 ~~i~vk~~~g~~-~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCCE-EEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            579999999985 89999999999999999999999999999999999999999999999999999999875

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.94  E-value=7.7e-27  Score=134.77  Aligned_cols=72  Identities=19%  Similarity=0.297  Sum_probs=70.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+.+|+++.+++++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~   72 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA   72 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence            799999999999999999999999999999999999999999999999999999999999999999999863

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.94  E-value=8.4e-27  Score=134.61  Aligned_cols=72  Identities=24%  Similarity=0.322  Sum_probs=70.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|+++.++++|++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++||+..+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~   72 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            789999999999999999999999999999999999999999999999999999999999999999999864

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.94  E-value=8.5e-27  Score=139.23  Aligned_cols=72  Identities=17%  Similarity=0.138  Sum_probs=65.6

Q ss_pred             EEEEEEcCCCCE--EEEEeCCCCcHHHHHHHHHHHhC--CCCccEEEEEcceEecCCccccccC--CCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKK--VRVKCNPDDTIGDLKKLIAAQTG--TRWEKIVLKKWYTIFKDHIRIMDYE--IHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~--~~v~v~~~~TV~~lK~~I~~~~g--ip~~~QrLif~Gk~L~D~~tL~~y~--I~~g~ti~L~~~   73 (73)
                      |.|+||+++|++  ++++++|++||++||++|++..+  .|+++|||||+||.|+|+.||++|+  +++|+||||+|.
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~~   79 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVCA   79 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEeC
Confidence            789999999999  55555899999999999999874  5689999999999999999999996  999999999983

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.94  E-value=1.4e-26  Score=134.64  Aligned_cols=70  Identities=24%  Similarity=0.343  Sum_probs=68.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCC--CCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGT--RWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gi--p~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+||+.+|++++++|++++||++||++|++++|+  |+++|||+|+|++|+|+.||++|||++|++|++.
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~   72 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVM   72 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEE
Confidence            799999999999999999999999999999999999  9999999999999999999999999999999875

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.94  E-value=1.8e-26  Score=132.05  Aligned_cols=72  Identities=25%  Similarity=0.302  Sum_probs=69.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||++.|+++++++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|||++|++|||.-+
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999743

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>KOG0004|consensus

Probab=99.94  E-value=9.4e-28  Score=157.78  Aligned_cols=71  Identities=23%  Similarity=0.297  Sum_probs=69.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+||||+++|+++.+++++++||.++|++|++.+|||++||||||+|++|+|++||+||+|+..+|+||+-
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l   71 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL   71 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999974

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.94  E-value=1.4e-26  Score=136.68  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=68.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+||++.|+.++++++|++||++||++|+++.|+|+++|||+|+|+.|+|+ +|++|||++|++|||+.
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~   71 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVP   71 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEe
Confidence            89999999999999999999999999999999999999999999999999999 99999999999999974

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>KOG0003|consensus

Probab=99.94  E-value=3.1e-28  Score=153.14  Aligned_cols=71  Identities=24%  Similarity=0.327  Sum_probs=69.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ||+|+|+++|++++++++||+||.+||++|++++||||++|||+|+||+|+|..||++|||+..||||++-
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~   71 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999863

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.94  E-value=1.8e-26  Score=136.44  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=69.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE--EEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL--KKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL--if~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+||++.|++++++++|++||++||++|+++.|+|+++|||  +|+|+.|+|+.||++|||++|++|||.-
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~   75 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVV   75 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEE
Confidence            7999999999999999999999999999999999999999999  9999999999999999999999999975

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.93  E-value=3.9e-26  Score=132.65  Aligned_cols=68  Identities=21%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             EEEEcC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCC-ccccccCCCCCCEEEEE
Q psy4181           4 ITCNDR-LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDH-IRIMDYEIHDGMNLELY   71 (73)
Q Consensus         4 i~vk~~-~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~-~tL~~y~I~~g~ti~L~   71 (73)
                      |+||+. +|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+ .+|++|||++|++|||-
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            589999 999999999999999999999999999999999999999999987 68999999999999983

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>KOG0005|consensus

Probab=99.93  E-value=1.2e-26  Score=132.83  Aligned_cols=70  Identities=19%  Similarity=0.272  Sum_probs=68.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.|.||+++|+.+.++++|+|+|+.+|+++++++||||.+|||||+|+++.|+.|-++|++.-||++||+
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999985

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.92  E-value=8.3e-25  Score=124.75  Aligned_cols=67  Identities=33%  Similarity=0.437  Sum_probs=65.0

Q ss_pred             EcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           7 NDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         7 k~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+++|+.++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|||++|++|+|..+
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k   67 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIK   67 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEES
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEe
Confidence            7899999999999999999999999999999999999999999999999999999999999999864

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.91  E-value=2.2e-24  Score=123.44  Aligned_cols=69  Identities=23%  Similarity=0.237  Sum_probs=66.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+||+. |+..++++++++||++||++|++..|+|+++|||+|+|+.|.|+.+|++|||++|++|++.
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~   69 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL   69 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence            68999996 9999999999999999999999999999999999999999999999999999999999985

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.90  E-value=3.3e-23  Score=124.45  Aligned_cols=72  Identities=15%  Similarity=0.198  Sum_probs=70.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+.+|+.+.++|.+++|+..||++++++.|+|+++|||+|+|+.|+|+.|+++|++++|++||++.+
T Consensus        12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~   83 (87)
T cd01763          12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLE   83 (87)
T ss_pred             EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence            799999999999999999999999999999999999999999999999999999999999999999999753

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.89  E-value=2.9e-23  Score=121.64  Aligned_cols=64  Identities=22%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ++|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.||++|||++|++|||.-
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~   68 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQL   68 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEE
Confidence            5899999999999999999999999999999999999999999999999999999999999975

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.88  E-value=4.5e-23  Score=122.16  Aligned_cols=52  Identities=29%  Similarity=0.273  Sum_probs=49.1

Q ss_pred             CCCcHHHHHHHHHHH--hCCC-CccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          20 PDDTIGDLKKLIAAQ--TGTR-WEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        20 ~~~TV~~lK~~I~~~--~gip-~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      .++||++||++|+++  +|+| +++|||||+||+|+|+.||++|||++|+||||+
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv   73 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHIL   73 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEE
Confidence            489999999999999  5675 999999999999999999999999999999997

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>smart00213 UBQ Ubiquitin homologues

Probab=99.87  E-value=4.5e-22  Score=110.62  Aligned_cols=64  Identities=31%  Similarity=0.438  Sum_probs=61.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGM   66 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~   66 (73)
                      |+|+||+.+ +...++|++++||++||++|+++.|+|+++|+|+|+|+.|.|+.||++|||++|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            789999998 7999999999999999999999999999999999999999999999999999986

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.87  E-value=3.9e-22  Score=117.53  Aligned_cols=64  Identities=17%  Similarity=0.132  Sum_probs=59.9

Q ss_pred             EcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEec-CCccccccCCC-CCCEEEEE
Q psy4181           7 NDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK-DHIRIMDYEIH-DGMNLELY   71 (73)
Q Consensus         7 k~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~-D~~tL~~y~I~-~g~ti~L~   71 (73)
                      |...|.+++++|+|++||++||++|++++||||++||| |+|+.|. |..||++||++ +|+++||.
T Consensus         8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~   73 (75)
T cd01799           8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY   73 (75)
T ss_pred             cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence            44588999999999999999999999999999999999 9999995 77999999999 89999996

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.87  E-value=6.4e-22  Score=116.12  Aligned_cols=69  Identities=20%  Similarity=0.227  Sum_probs=65.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE---cceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK---WYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif---~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.|.||- .|++++++|++++||++||++|++..|+||++|+|+|   +|+.|+|+.+|++|||++|+.|+|.
T Consensus         1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            5688886 8999999999999999999999999999999999996   9999999999999999999999984

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.85  E-value=2.6e-21  Score=141.71  Aligned_cols=70  Identities=21%  Similarity=0.315  Sum_probs=68.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTG---TRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~g---ip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+||++.|+++.++|++++||.+||++|++..|   +|+++|||||+||+|+|+.||++|||++|++|++.
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvm   73 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVM   73 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence            79999999999999999999999999999999999   99999999999999999999999999999999875

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0010|consensus

Probab=99.84  E-value=3.2e-21  Score=144.19  Aligned_cols=70  Identities=30%  Similarity=0.393  Sum_probs=67.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |.|.||+..+ +..|.|..+.||++||+.|+.++++|+|+|+|||.||+|||++||..|||+||+||||+-
T Consensus        16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVi   85 (493)
T KOG0010|consen   16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVI   85 (493)
T ss_pred             eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEe
Confidence            6899999988 888999999999999999999999999999999999999999999999999999999983

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.80  E-value=4e-19  Score=99.71  Aligned_cols=68  Identities=35%  Similarity=0.472  Sum_probs=65.3

Q ss_pred             EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           6 CNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         6 vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||..+|+.+.++++++.||++||++|+++.|+|++.|+|+|+|+.|+|..+|++|++.+|++|++.++
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~~   69 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVLR   69 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEEC
Confidence            78889999999999999999999999999999999999999999999999999999999999998763

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.80  E-value=8.9e-20  Score=115.01  Aligned_cols=73  Identities=14%  Similarity=0.109  Sum_probs=64.7

Q ss_pred             CEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHH-----HHhCCC--CccEEEEEcceEecCCccccccC------CCCCC
Q psy4181           1 MIEITCNDRLGKKV-RVKCNPDDTIGDLKKLIA-----AQTGTR--WEKIVLKKWYTIFKDHIRIMDYE------IHDGM   66 (73)
Q Consensus         1 ~~~i~vk~~~G~~~-~v~v~~~~TV~~lK~~I~-----~~~gip--~~~QrLif~Gk~L~D~~tL~~y~------I~~g~   66 (73)
                      ++.|.++-.+|..+ +..++|++||++||++|+     +++|+|  +++|||||+||+|+|+.||++|+      ++...
T Consensus         4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~   83 (113)
T cd01814           4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVI   83 (113)
T ss_pred             cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCce
Confidence            36778888888544 667899999999999999     667788  99999999999999999999999      88899


Q ss_pred             EEEEEeC
Q psy4181          67 NLELYYQ   73 (73)
Q Consensus        67 ti~L~~~   73 (73)
                      |+|++.|
T Consensus        84 TmHvvlr   90 (113)
T cd01814          84 TMHVVVQ   90 (113)
T ss_pred             EEEEEec
Confidence            9999875

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.75  E-value=8.4e-18  Score=96.59  Aligned_cols=70  Identities=23%  Similarity=0.262  Sum_probs=66.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC-ccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW-EKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~-~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+|++.+|+.+.+.|.+++++..|++.++++.|+|+ ++.+|+|.|+.|.++.|+++||+++|++|++.
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence            79999999999999999999999999999999999999 99999999999999999999999999999975

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0001|consensus

Probab=99.73  E-value=3.4e-17  Score=90.87  Aligned_cols=70  Identities=26%  Similarity=0.328  Sum_probs=67.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ++++++..|++..+++.++++|..+|++|+...|+|+++|++.|+|+.|+|..+|.+|+|.++++++|+.
T Consensus         1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~   70 (75)
T KOG0001|consen    1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVL   70 (75)
T ss_pred             CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEE
Confidence            3789999999999999999999999999999999999999999999999999999999999999999875

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.67  E-value=7e-16  Score=92.23  Aligned_cols=70  Identities=19%  Similarity=0.197  Sum_probs=59.5

Q ss_pred             EEEEEEcCC-CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE-EEcce-----Ee-cCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRL-GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL-KKWYT-----IF-KDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~-G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL-if~Gk-----~L-~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +.|+|+... .......++++.||.+||++++...|+||+.||| +|.|+     .| +|..+|++||+++|++||+.
T Consensus         2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv   79 (84)
T cd01789           2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI   79 (84)
T ss_pred             EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence            567888743 3334444999999999999999999999999999 58888     56 78889999999999999985

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.67  E-value=1.9e-16  Score=98.41  Aligned_cols=60  Identities=13%  Similarity=-0.013  Sum_probs=56.0

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEec-CCccccccCCCCCCEEEEE
Q psy4181          12 KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK-DHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        12 ~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~-D~~tL~~y~I~~g~ti~L~   71 (73)
                      +..+++|+|++||++||.+|..++|+||++|+|+|.|+.|. |..||++|||..|++|+|.
T Consensus        15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Ll   75 (107)
T cd01795          15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLK   75 (107)
T ss_pred             CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEE
Confidence            45678899999999999999999999999999999999996 4789999999999999985

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>KOG0011|consensus

Probab=99.66  E-value=2e-16  Score=114.21  Aligned_cols=69  Identities=20%  Similarity=0.321  Sum_probs=66.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC--CCCccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTG--TRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~g--ip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      |.|+||++.|.++++++.|++||.++|.+|+...|  .|+++|.|||+||.|+|+.|+.+|+|.+++-|-+
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVv   71 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVV   71 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEE
Confidence            78999999999999999999999999999999999  9999999999999999999999999999987643

>KOG3493|consensus

Probab=99.62  E-value=1.4e-16  Score=92.38  Aligned_cols=73  Identities=89%  Similarity=1.335  Sum_probs=71.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||++.+++..|+++.+.|.|+|||+++|.-|+++.|..|+..+|--.+..++|+-||++|.|++|..+.|+|+
T Consensus         1 miev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy~   73 (73)
T KOG3493|consen    1 MIEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYYQ   73 (73)
T ss_pred             CceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEeeC
Confidence            8999999999999999999999999999999999999999999998899999999999999999999999996

>PLN02560 enoyl-CoA reductase

Probab=99.61  E-value=2.5e-15  Score=107.78  Aligned_cols=69  Identities=23%  Similarity=0.330  Sum_probs=63.5

Q ss_pred             EEEEEEcCCCCEE---EEEeCCCCcHHHHHHHHHHHhCC-CCccEEEEEc---c----eEecCCccccccCCCCCCEEEE
Q psy4181           2 IEITCNDRLGKKV---RVKCNPDDTIGDLKKLIAAQTGT-RWEKIVLKKW---Y----TIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~~~G~~~---~v~v~~~~TV~~lK~~I~~~~gi-p~~~QrLif~---G----k~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      |+|.||..+|+.+   +++++|++||++||++|+++.|+ ++++|||++.   |    +.|+|+.||++||+++|++|++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            6899999999998   89999999999999999999997 8999999983   4    4899999999999999999875

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=99.55  E-value=3.4e-14  Score=84.82  Aligned_cols=71  Identities=18%  Similarity=0.280  Sum_probs=59.6

Q ss_pred             CEEEEEEcCCC--CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc----ce---Ee-cCCccccccCCCCCCEEEE
Q psy4181           1 MIEITCNDRLG--KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW----YT---IF-KDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         1 ~~~i~vk~~~G--~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~----Gk---~L-~D~~tL~~y~I~~g~ti~L   70 (73)
                      |+.|+|.....  ......++++.||.+||++|+...|+||+.|||.+.    +.   .+ .|..+|.+||+++|++||+
T Consensus         1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V   80 (87)
T PF14560_consen    1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV   80 (87)
T ss_dssp             EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred             CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence            57888888766  488899999999999999999999999999999775    22   23 5789999999999999997


Q ss_pred             E
Q psy4181          71 Y   71 (73)
Q Consensus        71 ~   71 (73)
                      .
T Consensus        81 ~   81 (87)
T PF14560_consen   81 V   81 (87)
T ss_dssp             E
T ss_pred             E
Confidence            4

>KOG4248|consensus

Probab=99.53  E-value=1.5e-14  Score=115.48  Aligned_cols=71  Identities=18%  Similarity=0.199  Sum_probs=68.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +.|.|||++.++.++.|..-+||.++|..|.+..+|+.+.|||||+||.|.|+.++.+||| ||-+|||+=|
T Consensus         3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlver   73 (1143)
T KOG4248|consen    3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVER   73 (1143)
T ss_pred             cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeecc
Confidence            3589999999999999999999999999999999999999999999999999999999999 9999999843

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=99.48  E-value=1.2e-13  Score=80.90  Aligned_cols=68  Identities=31%  Similarity=0.340  Sum_probs=55.9

Q ss_pred             EEEEEcCCCCEEE-EEe-CCCCcHHHHHHHHHHHhC-CCCccEEE--EEcceEecCCccccccCCCCCCEEEE
Q psy4181           3 EITCNDRLGKKVR-VKC-NPDDTIGDLKKLIAAQTG-TRWEKIVL--KKWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         3 ~i~vk~~~G~~~~-v~v-~~~~TV~~lK~~I~~~~g-ip~~~QrL--if~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      +|.+|....+.+. +++ +|+.||++||..|+++.+ +|+++|||  .+.|+.|.|+.||++||+++|++|++
T Consensus         2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801           2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            5677764424443 444 488999999999999975 58999999  48999999999999999999999875

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=99.39  E-value=7.1e-12  Score=78.78  Aligned_cols=72  Identities=24%  Similarity=0.233  Sum_probs=56.0

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHh-------CCCCccEEEEEcceEecCCccccccCCCCCC------E
Q psy4181           2 IEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQT-------GTRWEKIVLKKWYTIFKDHIRIMDYEIHDGM------N   67 (73)
Q Consensus         2 ~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~-------gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~------t   67 (73)
                      +.|.++-.+|+ ..++.+++++||.+||+.|.+.-       -..+...||||.||.|+|..||+++++.-|.      +
T Consensus         3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v   82 (111)
T PF13881_consen    3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV   82 (111)
T ss_dssp             EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred             EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence            56667777999 89999999999999999998652       2345679999999999999999999999877      6


Q ss_pred             EEEEeC
Q psy4181          68 LELYYQ   73 (73)
Q Consensus        68 i~L~~~   73 (73)
                      +||+.|
T Consensus        83 mHlvvr   88 (111)
T PF13881_consen   83 MHLVVR   88 (111)
T ss_dssp             EEEEE-
T ss_pred             EEEEec
Confidence            799865

>cd00196 UBQ Ubiquitin-like proteins

Probab=99.36  E-value=9.3e-12  Score=65.15  Aligned_cols=66  Identities=29%  Similarity=0.313  Sum_probs=61.4

Q ss_pred             EcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           7 NDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         7 k~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      +..+|....+.+.++.|+.+||++|+++.|.+++.|+|.++|..+++...+.+|++.+|+++++.-
T Consensus         3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            344789999999999999999999999999999999999999999999998999999999999864

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=99.36  E-value=2.5e-12  Score=81.53  Aligned_cols=71  Identities=14%  Similarity=0.120  Sum_probs=61.0

Q ss_pred             EEEEEcCCC-CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCC-------CCCCEEEEEeC
Q psy4181           3 EITCNDRLG-KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI-------HDGMNLELYYQ   73 (73)
Q Consensus         3 ~i~vk~~~G-~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I-------~~g~ti~L~~~   73 (73)
                      -+|+.-.-. .++=+++.++.||.+||.+|+.-...||+.|||+-.+..|+|..||++||+       ++-.+|-|.||
T Consensus         2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r   80 (119)
T cd01788           2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR   80 (119)
T ss_pred             ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence            455555433 455568999999999999999999999999999977788999999999999       88889988875

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=99.11  E-value=1.3e-10  Score=69.19  Aligned_cols=69  Identities=23%  Similarity=0.263  Sum_probs=43.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc---ceEe--cCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW---YTIF--KDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~---Gk~L--~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |-|-|++..|.. .|+++|++|+.+||++|++..++|++.|.|..+   ...|  .+..||+++||+.|+-|+|.
T Consensus         5 milRvrS~dG~~-Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    5 MILRVRSKDGMK-RIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             -EEEEE-SSEEE-EEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             EEEEEECCCCCE-EEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            567888887755 489999999999999999999999999998442   2245  46889999999999999874

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.95  E-value=5.6e-09  Score=62.07  Aligned_cols=68  Identities=19%  Similarity=0.175  Sum_probs=59.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE---cce--EecCCccccccCCCCCCEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK---WYT--IFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif---~Gk--~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      |||.||-..+...++.|.|..+|..+|++|...-|++- +|||-|   +|+  .|.+..||++|||=..-.|-|
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~l   73 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICL   73 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEE
Confidence            68999999999999999999999999999999999987 999999   343  368999999999976555544

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG0006|consensus

Probab=98.78  E-value=1.5e-08  Score=74.26  Aligned_cols=70  Identities=10%  Similarity=0.159  Sum_probs=60.4

Q ss_pred             EEEEEEcC---CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDR---LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~---~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |-++|...   ....++++|+.+.+|.+||+-++.+.|+|+++.|.||.||.|.|..|++.+.+.--+.+|..
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM   73 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence            34566554   56778899999999999999999999999999999999999999999998887777777754

>KOG1872|consensus

Probab=98.67  E-value=5.7e-08  Score=73.24  Aligned_cols=67  Identities=24%  Similarity=0.157  Sum_probs=62.8

Q ss_pred             EEEEcCCCCEEEEE-eCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           4 ITCNDRLGKKVRVK-CNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         4 i~vk~~~G~~~~v~-v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.||- .|+..+++ ++.++|+..+|+++.+..|+||+.|++...|+.++|+--+...+|++|.||+|.
T Consensus         6 v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMm   73 (473)
T KOG1872|consen    6 VIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMM   73 (473)
T ss_pred             Eeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEee
Confidence            66775 89999998 999999999999999999999999999999999999988999999999999984

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=98.55  E-value=4.6e-07  Score=53.14  Aligned_cols=69  Identities=19%  Similarity=0.196  Sum_probs=50.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc------EEEE-EcceEecCCccccccCCCCCCEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK------IVLK-KWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~------QrLi-f~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      +.|.|....|+.+.+.+..+.+|++|...|.+..+.+...      .+|. -+|.+|.++.||+++||.||++++|
T Consensus         3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            4567777568999999999999999999999988774433      4554 5799999999999999999999987

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG1769|consensus

Probab=98.51  E-value=1.7e-06  Score=53.64  Aligned_cols=70  Identities=17%  Similarity=0.202  Sum_probs=65.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |++.|+.-.|..+.+.|.-+.+.+.|+.--+++.|++..+-|.+|.|+.+.+.+|=++.+.++|+.|..+
T Consensus        21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~   90 (99)
T KOG1769|consen   21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVV   90 (99)
T ss_pred             EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEE
Confidence            5778888788888999999999999999999999999999999999999999999999999999999764

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=98.38  E-value=2.4e-06  Score=49.25  Aligned_cols=63  Identities=16%  Similarity=0.122  Sum_probs=47.7

Q ss_pred             cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181           8 DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         8 ~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      +.+|+..++.|.|+.|+.++=++...++|+++++-.|.|+++.|+-..+..-.|+.+|+.+.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            458999999999999999999999999999999999999999999899999999999999876

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG4495|consensus

Probab=98.36  E-value=8.2e-07  Score=55.24  Aligned_cols=60  Identities=13%  Similarity=0.091  Sum_probs=48.9

Q ss_pred             EEEEEcC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-cc-eEecCCccccccCC
Q psy4181           3 EITCNDR-LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-WY-TIFKDHIRIMDYEI   62 (73)
Q Consensus         3 ~i~vk~~-~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-~G-k~L~D~~tL~~y~I   62 (73)
                      .+|++-. .-.++-++++++.||.+||.+++.-..-|++.|||.- .. ..|+|..||+++|.
T Consensus         2 ~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf   64 (110)
T KOG4495|consen    2 DVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF   64 (110)
T ss_pred             ceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence            3455544 3445566899999999999999999999999999976 44 56899999999954

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=98.32  E-value=5.6e-06  Score=55.26  Aligned_cols=71  Identities=14%  Similarity=0.110  Sum_probs=55.7

Q ss_pred             EEEEEEcCCC----CEEEEEeCCCCcHHHHHHHHHHHhCCCCccE-EEEE-cceEe--cCCccccccCCCCCC----EEE
Q psy4181           2 IEITCNDRLG----KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKI-VLKK-WYTIF--KDHIRIMDYEIHDGM----NLE   69 (73)
Q Consensus         2 ~~i~vk~~~G----~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Q-rLif-~Gk~L--~D~~tL~~y~I~~g~----ti~   69 (73)
                      |+|||++..|    .++.+.+.++.||.+|+..|.+..++|+..| .|.+ .++.|  .++..+..+.-.+.+    +++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            6899999999    6999999999999999999999999999985 4555 46666  455566666544443    566


Q ss_pred             EEe
Q psy4181          70 LYY   72 (73)
Q Consensus        70 L~~   72 (73)
                      |.+
T Consensus        81 l~~   83 (162)
T PF13019_consen   81 LSL   83 (162)
T ss_pred             EEE
Confidence            655

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=98.30  E-value=1.6e-05  Score=46.28  Aligned_cols=70  Identities=16%  Similarity=0.113  Sum_probs=60.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEE--EcceEecCC--ccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLK--KWYTIFKDH--IRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLi--f~Gk~L~D~--~tL~~y~I~~g~ti~L~   71 (73)
                      ..|-||.++|+.+.-...+++||.+|.+-|....+.+... -+|+  |--+.|.+.  .||++.|+.+..+|++.
T Consensus         7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            4688999999999999999999999999999998877765 6675  566788654  59999999999999986

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>KOG0013|consensus

Probab=98.28  E-value=1.2e-06  Score=60.88  Aligned_cols=57  Identities=16%  Similarity=0.188  Sum_probs=54.9

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCC
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGM   66 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~   66 (73)
                      +++.+.+.+...||++++|.++.+++|+++-.||++|+|+.|-|..-|+.++|++|.
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~  211 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQ  211 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCC
Confidence            788899999999999999999999999999999999999999999999999999993

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=98.28  E-value=2.6e-06  Score=52.42  Aligned_cols=56  Identities=16%  Similarity=0.096  Sum_probs=43.1

Q ss_pred             EEEEcCC-CCEEEEEeC--CCCcHHHHHHHHHHHhCCCC--ccEEEEEcceEecCCccccc
Q psy4181           4 ITCNDRL-GKKVRVKCN--PDDTIGDLKKLIAAQTGTRW--EKIVLKKWYTIFKDHIRIMD   59 (73)
Q Consensus         4 i~vk~~~-G~~~~v~v~--~~~TV~~lK~~I~~~~gip~--~~QrLif~Gk~L~D~~tL~~   59 (73)
                      |.|+..+ -..++++|.  ++.||..||.+|.++-+-++  ..+||||+||.|.|+..|..
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~   63 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSS   63 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhh
Confidence            4455544 355777877  89999999999999984444  45688999999999988764

They contain a characteristic GFDRL sequence motif.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=97.82  E-value=0.00021  Score=41.73  Aligned_cols=70  Identities=11%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE--EcceEecC---CccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK--KWYTIFKD---HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi--f~Gk~L~D---~~tL~~y~I~~g~ti~L~   71 (73)
                      ..|-||.++|+.+.-...+++||.+|.+-+....+.+...-.|+  |-.+.|.+   ..||.+.|+.+..+|.+.
T Consensus         5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~   79 (80)
T smart00166        5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE   79 (80)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence            36889999999999999999999999999977777776677774  45667764   469999999999998875

Present in FAF1 and Shp1p.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=97.69  E-value=0.0005  Score=40.56  Aligned_cols=67  Identities=13%  Similarity=0.151  Sum_probs=53.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC-CccEEEE--EcceEecC-CccccccCCCCCCEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR-WEKIVLK--KWYTIFKD-HIRIMDYEIHDGMNL   68 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip-~~~QrLi--f~Gk~L~D-~~tL~~y~I~~g~ti   68 (73)
                      -.|-||.++|+.+...+..++||++|.+-|....+-+ ...-.|.  |=.|.|.| +.||++.|+.+...+
T Consensus         5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            3688999999999999999999999999999875432 3445664  66788854 789999999975554

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG1639|consensus

Probab=97.57  E-value=0.00019  Score=51.26  Aligned_cols=69  Identities=23%  Similarity=0.273  Sum_probs=52.0

Q ss_pred             EEEEEEcCCC-CEEE-EEeCCCCcHHHHHHHHHHH-hCCCCccE--EEEE--cceEecCCccccccCCCCCCEEEE
Q psy4181           2 IEITCNDRLG-KKVR-VKCNPDDTIGDLKKLIAAQ-TGTRWEKI--VLKK--WYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~~~G-~~~~-v~v~~~~TV~~lK~~I~~~-~gip~~~Q--rLif--~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      |.|.+++.++ -..+ ...+.+.||++++..|..+ ..+.+..+  +|-+  +|++|.|+.+|++|+..+|.|+.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            5678888766 2333 4567789999999665555 57877444  4444  799999999999999999988854

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=97.57  E-value=0.0016  Score=39.00  Aligned_cols=68  Identities=9%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc--eEec--------CCccccccCCCCCCEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY--TIFK--------DHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G--k~L~--------D~~tL~~y~I~~g~ti~L   70 (73)
                      +.|-||-++|+.+.-....++||++|.+=|... +-+++.-.|+.+=  |.+.        .+.||++.|+.+..+|.+
T Consensus         5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V   82 (85)
T cd01774           5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV   82 (85)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence            578899999999999999999999999999754 5566889998877  7885        267999999999888765

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=97.49  E-value=0.0016  Score=37.63  Aligned_cols=68  Identities=12%  Similarity=0.152  Sum_probs=53.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE--EcceEecC---CccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK--KWYTIFKD---HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi--f~Gk~L~D---~~tL~~y~I~~g~ti~L~   71 (73)
                      ..|-||.++|+.+.-...+++||.+|.+-|.....- ...-.|+  |-.+.+.|   +.||++.|+. .+++-+.
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~   75 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR   75 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence            368899999999999999999999999999876543 4555665  44567754   7899999999 4555443

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=97.42  E-value=0.002  Score=37.78  Aligned_cols=68  Identities=10%  Similarity=0.147  Sum_probs=55.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE--EcceEecC---CccccccCCCCCCEEEEE
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK--KWYTIFKD---HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi--f~Gk~L~D---~~tL~~y~I~~g~ti~L~   71 (73)
                      .|-||.++|+.+.-...+++|+.+|.+-++...+-+ ..-.|+  |--|.+.+   ..||++.|+.+..+|.+.
T Consensus         6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~   78 (79)
T cd01772           6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT   78 (79)
T ss_pred             EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence            578999999999999999999999999998776543 445564  45667753   479999999999998863

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG3206|consensus

Probab=97.37  E-value=0.00099  Score=46.47  Aligned_cols=71  Identities=17%  Similarity=0.280  Sum_probs=57.1

Q ss_pred             CEEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE-EEcc-----eEec-CCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL-KKWY-----TIFK-DHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL-if~G-----k~L~-D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+.|+|-+...+ ......+++.||.++|.+++-..|.+++..+| +|.|     -.|. ++..|..|+..+|..||+.
T Consensus         1 ~v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi   79 (234)
T KOG3206|consen    1 MVRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI   79 (234)
T ss_pred             CeEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence            677888765443 23345689999999999999999999999998 7766     2464 5779999999999999974

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=97.30  E-value=0.0039  Score=35.70  Aligned_cols=61  Identities=20%  Similarity=0.286  Sum_probs=46.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ||.|+++.. +....+++++..||.+|-+++    |++++.-....+|+.+..     ++-+++|+.|.++
T Consensus         4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii   64 (70)
T PRK08364          4 MIRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVI   64 (70)
T ss_pred             EEEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEE
Confidence            678888542 235678888889999888664    888877777789998853     5568999998775

>COG5417 Uncharacterized small protein [Function unknown]

Probab=97.13  E-value=0.0082  Score=35.84  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=55.2

Q ss_pred             EEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC-----ccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181           5 TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW-----EKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~-----~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      =++.-+|.++.+.++.--+|+.|-.-..+.+.++.     .+.|..-.++.|.+++.|.+|+|.+|+.+.+
T Consensus        10 D~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417          10 DFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            34566899999999999999999887777765542     4567778999999999999999999999875

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=97.08  E-value=0.0027  Score=38.39  Aligned_cols=43  Identities=21%  Similarity=0.343  Sum_probs=37.6

Q ss_pred             EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc---cEEEEE
Q psy4181           4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE---KIVLKK   46 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~---~QrLif   46 (73)
                      ..+|++.|+++.+.+.|+..+.+|++.|+.+.|++.+   .-.|.|
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            4678999999999999999999999999999999985   444544

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=97.03  E-value=0.0014  Score=38.45  Aligned_cols=54  Identities=26%  Similarity=0.429  Sum_probs=46.5

Q ss_pred             eCCCCcHHHHHHHHHHHhC-CCCccEEEEEcceEecCCccccccC-CCCCCEEEEE
Q psy4181          18 CNPDDTIGDLKKLIAAQTG-TRWEKIVLKKWYTIFKDHIRIMDYE-IHDGMNLELY   71 (73)
Q Consensus        18 v~~~~TV~~lK~~I~~~~g-ip~~~QrLif~Gk~L~D~~tL~~y~-I~~g~ti~L~   71 (73)
                      |.|+++|.++++-+.+... ..-..-.|.++|+.|.|...|.+.. +++|++++|+
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lv   56 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELV   56 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEE
Confidence            5789999999999999865 4555668899999999999998875 9999999986

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=97.03  E-value=0.0067  Score=34.65  Aligned_cols=65  Identities=12%  Similarity=0.062  Sum_probs=49.7

Q ss_pred             EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEE----c--ceEecCCccccccCCCCCCEEEE
Q psy4181           6 CNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKK----W--YTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         6 vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif----~--Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      |..++|...+++|+++.|+.+|=++|+++.|+.-.+ --|.|    +  ...|+.+.+|.++....+....|
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l   72 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTL   72 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEE
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEE
Confidence            567899999999999999999999999999997322 25666    2  34678899999998883443333

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PRK06437 hypothetical protein; Provisional

Probab=96.95  E-value=0.011  Score=33.73  Aligned_cols=53  Identities=13%  Similarity=0.031  Sum_probs=43.8

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      .++...+++++..||.+|=++    .|++++.--+..+|+.+.     .++-+++|+.|.++
T Consensus         9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv   61 (67)
T PRK06437          9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLIL   61 (67)
T ss_pred             CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEE
Confidence            567788888888999887655    699998888888999997     55678999999876

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=96.78  E-value=0.028  Score=33.69  Aligned_cols=68  Identities=10%  Similarity=0.058  Sum_probs=57.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE--cceEec---CCccccccCCCCCCEEEEE
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK--WYTIFK---DHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif--~Gk~L~---D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|-||.++|+.+.-....++|+..|-.-++. .|.+++.-.|+-  ==|.+.   .+.||++.|+.+-.+|.+.
T Consensus         7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq   79 (82)
T cd01773           7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ   79 (82)
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence            6889999999999999999999999998888 577889888874  344452   2579999999999998774

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=96.75  E-value=0.0092  Score=35.75  Aligned_cols=44  Identities=14%  Similarity=0.098  Sum_probs=38.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcce
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT   49 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk   49 (73)
                      +.||.+   + ++.+.|.+..+..+|.++|.++.++|+++-.|-|.-.
T Consensus         5 vKV~f~---~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde   48 (80)
T cd06406           5 VKVHFK---Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE   48 (80)
T ss_pred             EEEEEE---E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence            466666   3 9999999999999999999999999999999998543

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=96.72  E-value=0.017  Score=33.53  Aligned_cols=66  Identities=17%  Similarity=0.076  Sum_probs=45.5

Q ss_pred             CEEEEEEcC------CC-CEEEEEeCCCCcHHHHHHHHHHHh-CCCC--ccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181           1 MIEITCNDR------LG-KKVRVKCNPDDTIGDLKKLIAAQT-GTRW--EKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         1 ~~~i~vk~~------~G-~~~~v~v~~~~TV~~lK~~I~~~~-gip~--~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      ||.|.|+..      .| ....+++....||.+|.+.+.++. +...  ..-.+.-+|+...     .++-+++|++|.+
T Consensus         1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai   75 (82)
T PLN02799          1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI   75 (82)
T ss_pred             CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence            788888864      55 567788888999999999998775 1111  1112445777754     3345799999876


Q ss_pred             E
Q psy4181          71 Y   71 (73)
Q Consensus        71 ~   71 (73)
                      .
T Consensus        76 ~   76 (82)
T PLN02799         76 I   76 (82)
T ss_pred             e
Confidence            4

>KOG4583|consensus

Probab=96.63  E-value=0.00086  Score=49.60  Aligned_cols=59  Identities=17%  Similarity=0.142  Sum_probs=46.3

Q ss_pred             EEEEEEcCCC--CEEEEEeCCCCcHHHHHHHHHHHh-CCC-CccEEEEEcceEecCCcccccc
Q psy4181           2 IEITCNDRLG--KKVRVKCNPDDTIGDLKKLIAAQT-GTR-WEKIVLKKWYTIFKDHIRIMDY   60 (73)
Q Consensus         2 ~~i~vk~~~G--~~~~v~v~~~~TV~~lK~~I~~~~-gip-~~~QrLif~Gk~L~D~~tL~~y   60 (73)
                      ..++||.++-  +..+++++-..||++||..++... +-| ...|||||+||.|-|+.-|.+.
T Consensus        10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~   72 (391)
T KOG4583|consen   10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW   72 (391)
T ss_pred             eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence            3578888865  556667788999999999998874 333 4579999999999998877664

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.019  Score=35.51  Aligned_cols=66  Identities=12%  Similarity=0.096  Sum_probs=59.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEE
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNL   68 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti   68 (73)
                      .+.|-+-.|..+-+.|.-+.|-..|-...+.+.|-..+.-|..|.|+...-+.|=++++.++++.|
T Consensus        26 nLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~i   91 (103)
T COG5227          26 NLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEI   91 (103)
T ss_pred             ceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHH
Confidence            344555588999999999999999999999999999999999999999999999999999998865

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=96.51  E-value=0.042  Score=32.42  Aligned_cols=69  Identities=13%  Similarity=0.130  Sum_probs=57.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE--EcceEec--C-CccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK--KWYTIFK--D-HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi--f~Gk~L~--D-~~tL~~y~I~~g~ti~L~   71 (73)
                      .+|-||-++|+.+.-...+++|+.+|-.=+... |.+++.-+|+  |==|.+.  | +.||++.|+.+..+|.++
T Consensus         5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve   78 (80)
T cd01771           5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE   78 (80)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence            478899999999999999999999999988764 8888888885  3445563  3 569999999999998875

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=96.47  E-value=0.028  Score=31.67  Aligned_cols=53  Identities=17%  Similarity=0.195  Sum_probs=38.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      |+|+|   +|+.  ++++++.|..+||.++.    -+++  .+|++|-+.+++..     +++|+.|.|
T Consensus         1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k----~~~D--I~I~NGF~~~~d~~-----L~e~D~v~~   53 (57)
T PF14453_consen    1 MKIKV---NEKE--IETEENTTLFELRKESK----PDAD--IVILNGFPTKEDIE-----LKEGDEVFL   53 (57)
T ss_pred             CEEEE---CCEE--EEcCCCcCHHHHHHhhC----CCCC--EEEEcCcccCCccc-----cCCCCEEEE
Confidence            67777   4555  56677789999998743    3444  88999988887665     588888765

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=96.39  E-value=0.054  Score=32.94  Aligned_cols=60  Identities=18%  Similarity=0.168  Sum_probs=42.8

Q ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE-E-E--cce-EecC-CccccccCCCCCCEEEEE
Q psy4181          11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL-K-K--WYT-IFKD-HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL-i-f--~Gk-~L~D-~~tL~~y~I~~g~ti~L~   71 (73)
                      ...++-.++..|||..++..+.+.+.| .+.-|| . |  ++. .|.+ +.||++.||.+|-+|-|+
T Consensus        13 ~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE   78 (88)
T PF14836_consen   13 QSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIE   78 (88)
T ss_dssp             CEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEE
T ss_pred             ccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEE
Confidence            446778899999999999999999999 566788 3 2  232 4655 569999999999998776

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=96.10  E-value=0.056  Score=30.67  Aligned_cols=57  Identities=16%  Similarity=0.259  Sum_probs=42.1

Q ss_pred             CCC-EEEEEeCCCCcHHHHHHHHHHHhCC----CCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          10 LGK-KVRVKCNPDDTIGDLKKLIAAQTGT----RWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        10 ~G~-~~~v~v~~~~TV~~lK~~I~~~~gi----p~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      .|+ ...+++++..||.+|.+.+.++.+-    ....-++.-+|+...     .++-+++|+.|.++
T Consensus        13 ~g~~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~   74 (80)
T cd00754          13 AGKDEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAII   74 (80)
T ss_pred             hCCceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEe
Confidence            344 3567777789999999999988642    334555666998887     34568999999875

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>smart00455 RBD Raf-like Ras-binding domain

Probab=96.09  E-value=0.042  Score=31.69  Aligned_cols=43  Identities=19%  Similarity=0.102  Sum_probs=39.4

Q ss_pred             EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc
Q psy4181           6 CNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY   48 (73)
Q Consensus         6 vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G   48 (73)
                      |=.++|+...+.+.|+.||.++=+++.++.|+.++.-.+...|
T Consensus         4 v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        4 VHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             EECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            3457999999999999999999999999999999999998855

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=95.95  E-value=0.078  Score=29.58  Aligned_cols=59  Identities=10%  Similarity=0.156  Sum_probs=42.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|.|   +|+.+.+  ++ .|+.+|.+.+    +++++.-..-.+|+.+. ....++.-+++|+.|.++
T Consensus         1 m~i~~---Ng~~~~~--~~-~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv   59 (65)
T PRK06488          1 MKLFV---NGETLQT--EA-TTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEIL   59 (65)
T ss_pred             CEEEE---CCeEEEc--Cc-CcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEE
Confidence            56666   6887776  33 5899888764    77776666677898875 334456678999999875

>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e

Probab=95.84  E-value=0.024  Score=43.98  Aligned_cols=63  Identities=24%  Similarity=0.322  Sum_probs=44.5

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHh--CCCCcc------EEE--EEc--ce-EecCCc-------------cccccCCC
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQT--GTRWEK------IVL--KKW--YT-IFKDHI-------------RIMDYEIH   63 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~--gip~~~------QrL--if~--Gk-~L~D~~-------------tL~~y~I~   63 (73)
                      .+..+.|.|-.-|||.++|+||-+..  +.|..+      --|  ..+  |+ .|.|.+             ||++|||.
T Consensus       200 ~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~  279 (539)
T PF08337_consen  200 GSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVP  279 (539)
T ss_dssp             SSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--
T ss_pred             CCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCC
Confidence            34668899999999999999999883  655433      333  332  34 566653             79999999


Q ss_pred             CCCEEEEEe
Q psy4181          64 DGMNLELYY   72 (73)
Q Consensus        64 ~g~ti~L~~   72 (73)
                      ||++|-|+-
T Consensus       280 dga~vaLv~  288 (539)
T PF08337_consen  280 DGATVALVP  288 (539)
T ss_dssp             TTEEEEEEE
T ss_pred             CCceEEEee
Confidence            999998864

g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=95.57  E-value=0.073  Score=31.03  Aligned_cols=44  Identities=14%  Similarity=0.020  Sum_probs=39.6

Q ss_pred             EEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc
Q psy4181           5 TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY   48 (73)
Q Consensus         5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G   48 (73)
                      .|=.++|....+.|.|..||.++=+++.++-|++++.-.|.+.|
T Consensus         3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            44568999999999999999999999999999999999887754

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=95.54  E-value=0.16  Score=30.29  Aligned_cols=61  Identities=10%  Similarity=0.125  Sum_probs=45.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ||+|.|   +|+...+  ++..||.+|=+.    .++|+..--+-.+|..+. ...-+++-+++|+.|.++
T Consensus        18 ~m~I~V---NG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv   78 (84)
T PRK06083         18 LITISI---NDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLF   78 (84)
T ss_pred             eEEEEE---CCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEE
Confidence            577777   6776655  567788877654    588887777788999884 445566789999999876

>smart00666 PB1 PB1 domain

Probab=95.51  E-value=0.11  Score=29.70  Aligned_cols=46  Identities=20%  Similarity=0.230  Sum_probs=39.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY   48 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G   48 (73)
                      +.|.++. .|....+.++++.|-.+|+.+|+.+.+.+.+..+|-|..
T Consensus         2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D   47 (81)
T smart00666        2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD   47 (81)
T ss_pred             ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence            3455555 678999999999999999999999999998888888863

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PRK07440 hypothetical protein; Provisional

Probab=95.35  E-value=0.25  Score=28.33  Aligned_cols=61  Identities=18%  Similarity=0.235  Sum_probs=44.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ||+|.|   +|+..  ++.+..||.+|-+    ..|++++.--.-.+|..+. ...-++.-+++|+.|.++
T Consensus         4 ~m~i~v---NG~~~--~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~-r~~w~~~~L~~gD~IEIv   64 (70)
T PRK07440          4 PITLQV---NGETR--TCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILH-RQFWEQTQVQPGDRLEIV   64 (70)
T ss_pred             ceEEEE---CCEEE--EcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEE
Confidence            577777   57764  5567788887764    4688988888888999885 223345668999999875

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=95.32  E-value=0.23  Score=27.53  Aligned_cols=60  Identities=12%  Similarity=0.160  Sum_probs=42.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+|   +|+..  ++.+..||.++-+.    .|++++.--+-.+|..+.-. .-.+.-+++|+.|.++
T Consensus         1 m~i~v---NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~   60 (66)
T PRK05659          1 MNIQL---NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIV   60 (66)
T ss_pred             CEEEE---CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEE
Confidence            46666   67755  55677888877654    69999888888899777522 2234558999999875

>KOG0012|consensus

Probab=95.12  E-value=0.031  Score=41.70  Aligned_cols=61  Identities=20%  Similarity=0.227  Sum_probs=54.9

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecC--CccccccCCCCCCEEEE
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKD--HIRIMDYEIHDGMNLEL   70 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L   70 (73)
                      .-+.++++|...-...++++-++...|++.+..-|+|++++|.+  ..+|.+||..+|+++-|
T Consensus        11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~l   73 (380)
T KOG0012|consen   11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLAL   73 (380)
T ss_pred             ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEec
Confidence            55778888888888999999999999999999999999999975  57899999999999865

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=95.12  E-value=0.15  Score=28.60  Aligned_cols=57  Identities=19%  Similarity=0.282  Sum_probs=42.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEec--CCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK--DHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~--D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|.|   +|+...+  .+..|+.+|=+.    .|+|+..--+-.+|..+.  ++.   .+ +++|+.|.++
T Consensus         1 m~i~v---NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~---~~-L~~gD~ieIv   59 (65)
T PRK05863          1 MIVVV---NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWA---TK-LRDGARLEVV   59 (65)
T ss_pred             CEEEE---CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhh---hh-cCCCCEEEEE
Confidence            45666   6776655  467788777554    799999999999999774  333   35 9999999876

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=94.97  E-value=0.17  Score=29.64  Aligned_cols=63  Identities=21%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHH---hCCCCccEEEEE-cceEecCCccccccCCCCCCEEEEEe
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQ---TGTRWEKIVLKK-WYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~---~gip~~~QrLif-~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      +|....++..++...--+.++--+.   .|-|++..-|.= +|..|+=++.++|||+.+|-++.|+.
T Consensus         4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsL   70 (76)
T PF10790_consen    4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSL   70 (76)
T ss_pred             CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEe
Confidence            6888999998888877777766555   478999998865 78888889999999999999999864

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=94.97  E-value=0.16  Score=29.19  Aligned_cols=58  Identities=16%  Similarity=0.270  Sum_probs=40.6

Q ss_pred             CCCCE-EEEEeCCC-CcHHHHHHHHHHHhC-CC--CccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           9 RLGKK-VRVKCNPD-DTIGDLKKLIAAQTG-TR--WEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         9 ~~G~~-~~v~v~~~-~TV~~lK~~I~~~~g-ip--~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ..|+. ..+++.++ .||.+|++.+.++.+ .-  ....++.-+|+...+     +.-+++|+.|.+.
T Consensus        12 ~~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~   74 (80)
T TIGR01682        12 QAGTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFI   74 (80)
T ss_pred             HhCCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence            45654 47888876 899999999999864 11  122345558887764     4568999998764

The C-terminal Gly-Gly of this model is critical to function.

>TIGR02958 sec_mycoba_snm4 secretion protein snm4

Probab=94.87  E-value=0.17  Score=38.27  Aligned_cols=69  Identities=14%  Similarity=0.085  Sum_probs=53.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCC----C--CccEEEE-EcceEecCCccccccCCCCCCEEEEEe
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGT----R--WEKIVLK-KWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gi----p--~~~QrLi-f~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      .|.|-.. .+.+.+-+..+..|.++--.|-+..|-    +  +..-+|- -+|.+|+-+.||++.||.||++++|.-
T Consensus         4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p   79 (452)
T TIGR02958         4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP   79 (452)
T ss_pred             EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence            4566654 355778888999999999988888765    2  2233442 288999999999999999999999964

Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.

>smart00295 B41 Band 4

Probab=94.87  E-value=0.12  Score=33.60  Aligned_cols=62  Identities=11%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccE-EEEE--c-c---eEecCCccccccCCC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKI-VLKK--W-Y---TIFKDHIRIMDYEIH   63 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Q-rLif--~-G---k~L~D~~tL~~y~I~   63 (73)
                      +.+.|-.++|....+.++++.|+.++-+.++.+.|++..+- -|.+  . +   ..|....+|.+....
T Consensus         4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~   72 (207)
T smart00295        4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK   72 (207)
T ss_pred             EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence            45677788999999999999999999999999999954221 3332  1 1   355556676666544

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=94.82  E-value=0.12  Score=31.48  Aligned_cols=59  Identities=14%  Similarity=0.149  Sum_probs=42.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181          14 VRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus        14 ~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      +...++-..++..||..++.+.|++.+.--..-...+|+++.+|-+-+++-.-+|++.-
T Consensus         5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnv   63 (88)
T PF11620_consen    5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNV   63 (88)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEE
T ss_pred             EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEE
Confidence            44566777889999999999999999988887788889999999999999999988764

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>PF14451 Ub-Mut7C: Mut7-C ubiquitin

Probab=94.74  E-value=0.24  Score=29.38  Aligned_cols=52  Identities=19%  Similarity=0.233  Sum_probs=42.1

Q ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-cceEecCCccccccCCCCCCEEEEE
Q psy4181          11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-WYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +..+.+.+++..||+++-+.    .|+|..+--+++ +|+.-.=     +|-+++|+.|.++
T Consensus        22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~   74 (81)
T PF14451_consen   22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVY   74 (81)
T ss_pred             CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC-----cccCCCCCEEEEE
Confidence            56788999999999987655    899999998877 8877642     3678999998764

>KOG0007|consensus

Probab=94.65  E-value=0.014  Score=42.47  Aligned_cols=51  Identities=18%  Similarity=0.236  Sum_probs=44.8

Q ss_pred             cCCCCEEEEEeC-CCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCcccc
Q psy4181           8 DRLGKKVRVKCN-PDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIM   58 (73)
Q Consensus         8 ~~~G~~~~v~v~-~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~   58 (73)
                      ..+|....+.+. -+..+..+|.++.+..+|+++.|.+.|.|..|+|..+++
T Consensus       289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~  340 (341)
T KOG0007|consen  289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA  340 (341)
T ss_pred             CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence            457888888777 678899999999999999999999999999999986553

>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures

Probab=94.42  E-value=0.011  Score=43.08  Aligned_cols=62  Identities=16%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCEEEEEe--C-C--CCcHHHHHHHHHH----------HhCCCCccEE-----EEEcceEecCCccccccC
Q psy4181           2 IEITCNDRLGKKVRVKC--N-P--DDTIGDLKKLIAA----------QTGTRWEKIV-----LKKWYTIFKDHIRIMDYE   61 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v--~-~--~~TV~~lK~~I~~----------~~gip~~~Qr-----Lif~Gk~L~D~~tL~~y~   61 (73)
                      |.|.+|.+-+-.+.+.+  . |  +.||.++|..++.          ..++|.+..+     |.|+-|++-|..||.+..
T Consensus        79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l  158 (309)
T PF12754_consen   79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL  158 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence            34566666554443332  2 3  6899999999999          8999999999     999999999999998865


Q ss_pred             CC
Q psy4181          62 IH   63 (73)
Q Consensus        62 I~   63 (73)
                      -.
T Consensus       159 ~~  160 (309)
T PF12754_consen  159 AD  160 (309)
T ss_dssp             --
T ss_pred             hc
Confidence            44

Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=94.32  E-value=0.36  Score=26.80  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=39.8

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|+...+  ++..||.+|.++    .+++++.-....+|+.+..+ .-+++-+++|+.|.++
T Consensus         5 Ng~~~~~--~~~~tv~~ll~~----l~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii   59 (65)
T cd00565           5 NGEPREV--EEGATLAELLEE----LGLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIV   59 (65)
T ss_pred             CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEE
Confidence            4666544  567899988877    46888888888899987532 2233568999999875

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences

Probab=94.05  E-value=0.58  Score=28.32  Aligned_cols=60  Identities=13%  Similarity=0.210  Sum_probs=45.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHh-CCC----Cc-cEEEEEcc--eEecCCccccccCCCCCCEEEEEe
Q psy4181          13 KVRVKCNPDDTIGDLKKLIAAQT-GTR----WE-KIVLKKWY--TIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus        13 ~~~v~v~~~~TV~~lK~~I~~~~-gip----~~-~QrLif~G--k~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ..-+.|+..||+.++=++++... |.-    ++ --|+.+.|  +.+..+.|+++.||++-+.|...|
T Consensus        16 ~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~   83 (85)
T PF06234_consen   16 LQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF   83 (85)
T ss_dssp             EEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred             EEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence            34578899999999999999873 543    23 45777888  999999999999999999999988

Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=94.02  E-value=0.59  Score=26.41  Aligned_cols=60  Identities=17%  Similarity=0.292  Sum_probs=42.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCC-CcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPD-DTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~-~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+|   +|+...+  +.. .||.+|-+    ..|+++..--.-.+|..+. ...-+++-+++|+.|.++
T Consensus         1 m~I~v---NG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~-r~~w~~~~L~~gD~iEIv   61 (67)
T PRK07696          1 MNLKI---NGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQ-KDDHTDTSVFDGDQIEIV   61 (67)
T ss_pred             CEEEE---CCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEE
Confidence            55666   6776655  444 57877654    4788988888888999885 233445679999999876

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=93.99  E-value=0.39  Score=28.47  Aligned_cols=37  Identities=24%  Similarity=0.165  Sum_probs=32.0

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCCC-ccEEEEE
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRW-EKIVLKK   46 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~-~~QrLif   46 (73)
                      .|..+.+.+.|+.+..+|+++|+++.+++. ..-.|-|
T Consensus         8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY   45 (82)
T cd06407           8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKY   45 (82)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence            778999999999999999999999999975 4556655

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>KOG4250|consensus

Probab=93.93  E-value=0.22  Score=40.05  Aligned_cols=42  Identities=21%  Similarity=0.060  Sum_probs=38.7

Q ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceE
Q psy4181           9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI   50 (73)
Q Consensus         9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~   50 (73)
                      .++..+.+-++++.|+..+++.|+...|+|.+.|-|+|.|..
T Consensus       322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~  363 (732)
T KOG4250|consen  322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL  363 (732)
T ss_pred             ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence            377888999999999999999999999999999999998764

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=93.54  E-value=0.7  Score=25.76  Aligned_cols=59  Identities=17%  Similarity=0.258  Sum_probs=45.8

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCC--CCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGT--RWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gi--p~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      .| ...+.+....||.+|.+++.++..-  ..+.-++..+|+...+  .-.+.-+++|++|.+.
T Consensus        11 ~g-~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~   71 (77)
T PF02597_consen   11 AG-EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAIL   71 (77)
T ss_dssp             HT-EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEE
T ss_pred             hC-CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEE
Confidence            45 6778889999999999999887631  2356677779999988  3556678999999875

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=93.31  E-value=0.54  Score=26.55  Aligned_cols=43  Identities=21%  Similarity=0.103  Sum_probs=34.4

Q ss_pred             EEEEcCCCCEEEEEeC-CCCcHHHHHHHHHHHhCCCCccEEEEEc
Q psy4181           4 ITCNDRLGKKVRVKCN-PDDTIGDLKKLIAAQTGTRWEKIVLKKW   47 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~-~~~TV~~lK~~I~~~~gip~~~QrLif~   47 (73)
                      |.++. .|....+.+. ++.|..+|+++|+++.+.+...-++-|.
T Consensus         3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~   46 (81)
T cd05992           3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP   46 (81)
T ss_pred             EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence            44444 4678888888 8999999999999999998756666664

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=93.31  E-value=0.71  Score=25.56  Aligned_cols=55  Identities=18%  Similarity=0.167  Sum_probs=39.6

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|+...+  ..+.||.+|.+.    .+++++.-.+-.+|+.+. ...-+++-+++|+.|.++
T Consensus         4 Ng~~~~~--~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~-~~~~~~~~L~~gD~veii   58 (64)
T TIGR01683         4 NGEPVEV--EDGLTLAALLES----LGLDPRRVAVAVNGEIVP-RSEWDDTILKEGDRIEIV   58 (64)
T ss_pred             CCeEEEc--CCCCcHHHHHHH----cCCCCCeEEEEECCEEcC-HHHcCceecCCCCEEEEE
Confidence            5666655  567789988876    578888878888998874 122234568999999875

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=93.20  E-value=0.71  Score=26.24  Aligned_cols=45  Identities=22%  Similarity=0.168  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc
Q psy4181           3 EITCNDRLGKKVR-VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY   48 (73)
Q Consensus         3 ~i~vk~~~G~~~~-v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G   48 (73)
                      .|.+.. .|.... +.+.++.|..+|+++|+++.|.+...-+|.|..
T Consensus         3 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D   48 (84)
T PF00564_consen    3 RVKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD   48 (84)
T ss_dssp             EEEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred             EEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence            344444 444444 889999999999999999999998888888853

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=93.10  E-value=0.13  Score=35.83  Aligned_cols=68  Identities=16%  Similarity=0.101  Sum_probs=45.7

Q ss_pred             EEEEEEcCC--CCEE----EEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc------eEecCCccccccCCCCCCEEE
Q psy4181           2 IEITCNDRL--GKKV----RVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY------TIFKDHIRIMDYEIHDGMNLE   69 (73)
Q Consensus         2 ~~i~vk~~~--G~~~----~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G------k~L~D~~tL~~y~I~~g~ti~   69 (73)
                      +-||+|--+  .+++    .+-|..+++|.++=..|.++.|.|++..-++|.-      .+++...|++.+.+++|+.|-
T Consensus        69 iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~  148 (249)
T PF12436_consen   69 ILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIIC  148 (249)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEE
Confidence            456777542  2222    2457899999999999999999999999888854      347789999999999999874

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=92.54  E-value=0.5  Score=28.26  Aligned_cols=38  Identities=8%  Similarity=0.132  Sum_probs=31.6

Q ss_pred             CCCEEEEEeCC--CCcHHHHHHHHHHHhCCCCccEEEEEcceEecC
Q psy4181          10 LGKKVRVKCNP--DDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKD   53 (73)
Q Consensus        10 ~G~~~~v~v~~--~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D   53 (73)
                      .|.++.+.++|  +.|-.+|+++++.+.+++      -|.=|.|.|
T Consensus         8 ~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~------~f~lKYlDd   47 (81)
T cd06396           8 NGESQSFLVSDSENTTWASVEAMVKVSFGLN------DIQIKYVDE   47 (81)
T ss_pred             CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC------cceeEEEcC
Confidence            78999999999  669999999999999999      345555643

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=92.45  E-value=0.84  Score=26.17  Aligned_cols=43  Identities=19%  Similarity=0.085  Sum_probs=34.1

Q ss_pred             EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc
Q psy4181           6 CNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY   48 (73)
Q Consensus         6 vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G   48 (73)
                      |=-++|....+.+.|+.||.++=+++.++-|+.++.-.+...|
T Consensus         5 v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~   47 (71)
T PF02196_consen    5 VHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG   47 (71)
T ss_dssp             EEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred             EECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            3347999999999999999999999999999999887765433

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=92.34  E-value=1.1  Score=24.93  Aligned_cols=60  Identities=13%  Similarity=0.138  Sum_probs=41.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+|   +|+...+  .+..||.+|-+.    .+.++..-.+-.+|+.+. ...-+++-+++|+.|.++
T Consensus         1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii   60 (66)
T PRK08053          1 MQILF---NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLF   60 (66)
T ss_pred             CEEEE---CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEE
Confidence            56666   6777766  566789988765    566666677778998884 122233568999999775

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=92.13  E-value=1.1  Score=27.02  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=38.1

Q ss_pred             EEEEcC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCcccc
Q psy4181           4 ITCNDR-LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIM   58 (73)
Q Consensus         4 i~vk~~-~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~   58 (73)
                      |.||.. .|....+.|+|+-+-.+|.++|.++.|+. ..-++-|.-.  -|..|+.
T Consensus         3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~   55 (86)
T cd06408           3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG   55 (86)
T ss_pred             EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence            344544 78899999999999999999999999995 3445555433  3444543

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd01768 RA RA (Ras-associating) ubiquitin domain

Probab=92.06  E-value=1.4  Score=25.35  Aligned_cols=46  Identities=15%  Similarity=0.121  Sum_probs=35.5

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCC--CccEEEEE------cceEecCCc
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTR--WEKIVLKK------WYTIFKDHI   55 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip--~~~QrLif------~Gk~L~D~~   55 (73)
                      .|...++.|.+++|..++-+.+.++.|++  +..-.|+=      ..|.|.|++
T Consensus        11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e   64 (87)
T cd01768          11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDE   64 (87)
T ss_pred             CccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCC
Confidence            37789999999999999999999999998  44445532      345676654

The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=91.90  E-value=1.5  Score=25.37  Aligned_cols=59  Identities=17%  Similarity=0.203  Sum_probs=40.4

Q ss_pred             CCCC-EEEEEeCCCCcHHHHHHHHHHHhCC-----------CCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           9 RLGK-KVRVKCNPDDTIGDLKKLIAAQTGT-----------RWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         9 ~~G~-~~~v~v~~~~TV~~lK~~I~~~~gi-----------p~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ..|+ ...++++ ..||.+|.+.+.++..-           .....+..-+|+...+...   .-+++|+.|.+.
T Consensus        12 ~~g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~   82 (88)
T TIGR01687        12 ITGKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIF   82 (88)
T ss_pred             HhCCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEe
Confidence            3564 5677776 88999999999988631           1123445558887754432   568999999875

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14

Probab=91.86  E-value=0.77  Score=27.04  Aligned_cols=42  Identities=19%  Similarity=0.172  Sum_probs=37.8

Q ss_pred             cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcce
Q psy4181           8 DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT   49 (73)
Q Consensus         8 ~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk   49 (73)
                      -++|....+.+.|..||.++=.++.++-|++++---++..|+
T Consensus         6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~   47 (73)
T cd01817           6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG   47 (73)
T ss_pred             CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence            478999999999999999999999999999999998877553

RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.

>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []

Probab=91.84  E-value=1.5  Score=25.08  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=33.4

Q ss_pred             EEEEEEcCCCC----EEEEEeCCCCcHHHHHHHHHHHhCC--CCccEEEE
Q psy4181           2 IEITCNDRLGK----KVRVKCNPDDTIGDLKKLIAAQTGT--RWEKIVLK   45 (73)
Q Consensus         2 ~~i~vk~~~G~----~~~v~v~~~~TV~~lK~~I~~~~gi--p~~~QrLi   45 (73)
                      ++|+.-+  +.    ..++.|.+++|+.+|-+++.++.|+  +|..-.|.
T Consensus         5 lrVy~~~--~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~   52 (93)
T PF00788_consen    5 LRVYDGD--GSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV   52 (93)
T ss_dssp             EEEEETT--SSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred             EEEEcCC--CCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence            4555544  44    8899999999999999999999999  55556773

This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....

>COG5100 NPL4 Nuclear pore protein [Nuclear structure]

Probab=91.69  E-value=0.8  Score=35.25  Aligned_cols=70  Identities=21%  Similarity=0.218  Sum_probs=52.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHh--CCCCccEEEEE----cceE--ecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT--GTRWEKIVLKK----WYTI--FKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~--gip~~~QrLif----~Gk~--L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |-+-+++..|.. .++|.++|+.+.|-++|-+-.  +-+|++..+.-    .|..  +-.++|+.+.|+..|..+.|.|
T Consensus         1 Mi~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y   78 (571)
T COG5100           1 MIFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY   78 (571)
T ss_pred             CeEEEecCCCce-eeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence            345667766654 599999999999999988775  55666666543    2222  3457899999999999999998

>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain

Probab=91.27  E-value=2.3  Score=26.16  Aligned_cols=62  Identities=15%  Similarity=0.117  Sum_probs=43.6

Q ss_pred             CCEEEEEeCCCCcHHHHHHHHHHH------hCCCCc-cEEEEEcceE--ecCCccccccC-----CCCCCEEEEEe
Q psy4181          11 GKKVRVKCNPDDTIGDLKKLIAAQ------TGTRWE-KIVLKKWYTI--FKDHIRIMDYE-----IHDGMNLELYY   72 (73)
Q Consensus        11 G~~~~v~v~~~~TV~~lK~~I~~~------~gip~~-~QrLif~Gk~--L~D~~tL~~y~-----I~~g~ti~L~~   72 (73)
                      -..+++.|++++|+.+|.+.+-.+      ..-+++ +-.|-=.|+.  |-.+..|.+|.     ++.|.++||..
T Consensus        28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L  103 (108)
T smart00144       28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVL  103 (108)
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEE
Confidence            467899999999999999977776      222233 4566556663  66677777775     66677777764

Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).

>smart00314 RA Ras association (RalGDS/AF-6) domain

Probab=91.16  E-value=1.9  Score=25.02  Aligned_cols=53  Identities=13%  Similarity=0.122  Sum_probs=39.1

Q ss_pred             EEEEEEc-CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc--cEEEE--E-cc--eEecCC
Q psy4181           2 IEITCND-RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE--KIVLK--K-WY--TIFKDH   54 (73)
Q Consensus         2 ~~i~vk~-~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~--~QrLi--f-~G--k~L~D~   54 (73)
                      ++||.-+ ..+...++.|.+++|..++-..+.++.|++.+  .-.|+  . +|  +.|.|+
T Consensus         5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~   65 (90)
T smart00314        5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDD   65 (90)
T ss_pred             EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCC
Confidence            4555544 45788999999999999999999999999853  44553  2 34  567653

RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)

>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B

Probab=90.86  E-value=0.57  Score=27.94  Aligned_cols=53  Identities=25%  Similarity=0.317  Sum_probs=29.1

Q ss_pred             EEeCC-CCcHHHHHHHHH-HHhCCCCccEEEEEcceEecC----------CccccccCCCCCCEEEE
Q psy4181          16 VKCNP-DDTIGDLKKLIA-AQTGTRWEKIVLKKWYTIFKD----------HIRIMDYEIHDGMNLEL   70 (73)
Q Consensus        16 v~v~~-~~TV~~lK~~I~-~~~gip~~~QrLif~Gk~L~D----------~~tL~~y~I~~g~ti~L   70 (73)
                      +.+++ ..|+.+|-++|- .+.|.....-.+  +|+.|-|          +.+|+++||.+|+.+.+
T Consensus         2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~--~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v   66 (87)
T PF14732_consen    2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSV--GGTILYDSDEEEYDDNLPKKLSELGIVNGSILTV   66 (87)
T ss_dssp             EEE-TTT-BHHHHHHHCCCCCS--SSEEEEE--S-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEE
T ss_pred             EEEechhCcHHHHHHHHHHhccCCCCCEEEe--CCCEEEcCCcchhhhcccCChhHcCCCCCCEEEE
Confidence            34443 679999988764 456666533322  5555522          46899999999998865

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=90.61  E-value=2.1  Score=29.17  Aligned_cols=48  Identities=19%  Similarity=0.185  Sum_probs=30.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHhCCCCc---cEEE--EEcceE---ecCCcccccc
Q psy4181          13 KVRVKCNPDDTIGDLKKLIAAQTGTRWE---KIVL--KKWYTI---FKDHIRIMDY   60 (73)
Q Consensus        13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~---~QrL--if~Gk~---L~D~~tL~~y   60 (73)
                      .+.+-|..+.||.+|.+.++.+.+++.+   ..||  +++||.   +..+.+|++.
T Consensus        35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l   90 (213)
T PF14533_consen   35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL   90 (213)
T ss_dssp             EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence            4677789999999999999999999876   4555  557775   5667777655

>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7

Probab=90.45  E-value=1.3  Score=26.71  Aligned_cols=56  Identities=13%  Similarity=0.184  Sum_probs=41.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-------cceEecCCccccc
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-------WYTIFKDHIRIMD   59 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-------~Gk~L~D~~tL~~   59 (73)
                      ++||.  .+|.+.++.|+++.|+.++=+.+.++-+...+.=--++       -.|.++|++.|.+
T Consensus         5 vkv~~--~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd   67 (85)
T cd01787           5 VKVYS--EDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE   67 (85)
T ss_pred             EEEEe--cCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence            34444  67999999999999999999999999887765432223       2566777776543

Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=90.43  E-value=1.7  Score=26.62  Aligned_cols=40  Identities=15%  Similarity=0.077  Sum_probs=35.0

Q ss_pred             EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE
Q psy4181           6 CNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK   46 (73)
Q Consensus         6 vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif   46 (73)
                      ++...|.+..+.|+.+.|-.+|+.++++..+++.. ..|-|
T Consensus        17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky   56 (97)
T cd06410          17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY   56 (97)
T ss_pred             EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence            35568999999999999999999999999999987 66655

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=90.21  E-value=1.9  Score=31.78  Aligned_cols=60  Identities=18%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+|   +|+..  ++.+..||.+|-+.    .|++++.--+-.+|+.+. ...-.++-+++|+.|.++
T Consensus         1 M~I~V---NGk~~--el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII   60 (326)
T PRK11840          1 MRIRL---NGEPR--QVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIV   60 (326)
T ss_pred             CEEEE---CCEEE--ecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEE
Confidence            56666   57765  44677788877654    699999999999999984 333355779999999875

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=90.00  E-value=1  Score=26.81  Aligned_cols=35  Identities=11%  Similarity=0.169  Sum_probs=32.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc
Q psy4181          13 KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW   47 (73)
Q Consensus        13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~   47 (73)
                      ++.+.+.+..+..+|.++|+++.+.|++.-.|-|.
T Consensus         8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~   42 (78)
T cd06411           8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR   42 (78)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence            77888999999999999999999999999999884

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=89.95  E-value=2  Score=23.45  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=38.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+|   +|+...+  .+..|+.+|-+.+    |+++ .-..-.+|+..... .-++.-+++|++|.++
T Consensus         1 m~i~v---Ng~~~~~--~~~~tl~~ll~~l----~~~~-~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~   59 (65)
T PRK06944          1 MDIQL---NQQTLSL--PDGATVADALAAY----GARP-PFAVAVNGDFVART-QHAARALAAGDRLDLV   59 (65)
T ss_pred             CEEEE---CCEEEEC--CCCCcHHHHHHhh----CCCC-CeEEEECCEEcCch-hcccccCCCCCEEEEE
Confidence            45666   5776644  5678999888764    4543 34556788877421 1223448999999875

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=89.77  E-value=2.5  Score=24.26  Aligned_cols=61  Identities=23%  Similarity=0.250  Sum_probs=44.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ||+|.++   |+..  +++...|+.+|=++    .|++++.--...+|.++-. .--++.-+++|+-|.++
T Consensus         2 ~m~i~~n---g~~~--e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr-~~~~~~~l~~gD~ievv   62 (68)
T COG2104           2 PMTIQLN---GKEV--EIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPR-SQWADTILKEGDRIEVV   62 (68)
T ss_pred             cEEEEEC---CEEE--EcCCCCcHHHHHHH----hCCCCceEEEEECCEEccc-hhhhhccccCCCEEEEE
Confidence            5666664   6554  55666899988765    8999999999999998852 22345678888887664

>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27)

Probab=89.73  E-value=1.3  Score=26.92  Aligned_cols=42  Identities=14%  Similarity=0.093  Sum_probs=36.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL   44 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL   44 (73)
                      ++-|=-++|.+++++|..+++..++=+.++.+.|+|.+-.+-
T Consensus         3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y   44 (87)
T cd01777           3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY   44 (87)
T ss_pred             EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence            344445789999999999999999999999999999998764

SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.

>PRK01777 hypothetical protein; Validated

Probab=89.09  E-value=3.5  Score=25.05  Aligned_cols=62  Identities=18%  Similarity=0.147  Sum_probs=39.8

Q ss_pred             CEEEEEEcCC---CCEEEEEeCCCCcHHHHHHHHHHHhCCCCc--cE-----EEEEcceEecCCccccccCCCCCCEEEE
Q psy4181           1 MIEITCNDRL---GKKVRVKCNPDDTIGDLKKLIAAQTGTRWE--KI-----VLKKWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         1 ~~~i~vk~~~---G~~~~v~v~~~~TV~~lK~~I~~~~gip~~--~Q-----rLif~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      ||+|.|=...   .....+++.+..||.++=..    .||+.+  +.     .+.-+|+...-     +.-+++|+.|.+
T Consensus         3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeI   73 (95)
T PRK01777          3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEI   73 (95)
T ss_pred             eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEE
Confidence            5666654432   23467788999999987655    588776  32     34346665543     345799999987


Q ss_pred             E
Q psy4181          71 Y   71 (73)
Q Consensus        71 ~   71 (73)
                      +
T Consensus        74 y   74 (95)
T PRK01777         74 Y   74 (95)
T ss_pred             e
Confidence            5

>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor

Probab=87.78  E-value=4.1  Score=24.26  Aligned_cols=39  Identities=10%  Similarity=-0.049  Sum_probs=35.6

Q ss_pred             EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181           6 CNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL   44 (73)
Q Consensus         6 vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL   44 (73)
                      |=-++|...++.+.|++|++++=+-...+-|..|..-.|
T Consensus         4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~L   42 (77)
T cd01818           4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYL   42 (77)
T ss_pred             EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhee
Confidence            445799999999999999999999999999999998866

Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.

>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2

Probab=86.56  E-value=2.2  Score=28.40  Aligned_cols=52  Identities=15%  Similarity=0.328  Sum_probs=39.3

Q ss_pred             EEEEEEcCCCCEEEEEeCC-CCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCcccccc
Q psy4181           2 IEITCNDRLGKKVRVKCNP-DDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY   60 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~-~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y   60 (73)
                      +.+.|+.  |+.+ ++++. .+.+..+++-+.+..-.+.+-    .-|+-++...|+.||
T Consensus        68 veL~V~v--Gri~-lele~~~~~ie~I~~iCee~lpf~y~i----~~G~f~r~~~TvtDY  120 (153)
T PF02505_consen   68 VELTVKV--GRII-LELEDEEDVIEKIREICEEVLPFGYDI----KEGKFIRTKPTVTDY  120 (153)
T ss_pred             EEEEEEE--eEEE-EEecCcHHHHHHHHHHHHHhCCCceEe----eeeEEeccCCchhhh
Confidence            4455554  6655 88888 889999998888877555543    469999999999987

8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis

>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement

Probab=86.45  E-value=3.5  Score=23.82  Aligned_cols=51  Identities=29%  Similarity=0.356  Sum_probs=34.8

Q ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+.+.+   | +|+.+|.+..++++|++ ..-.+.-.|-..+|=..     |.||+.+.++
T Consensus        19 GKvi~l---P-~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~-----IRDgD~L~~~   69 (69)
T PF11834_consen   19 GKVIWL---P-DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDV-----IRDGDHLYLV   69 (69)
T ss_pred             CEEEEc---C-ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEE-----EEcCCEEEEC
Confidence            555554   3 69999999999999997 33334445555554433     7888887763

Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].

>cd01764 Urm1 Urm1-like ubuitin domain

Probab=86.16  E-value=3.6  Score=24.74  Aligned_cols=54  Identities=20%  Similarity=0.189  Sum_probs=35.3

Q ss_pred             EEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc-c------eEecC---Cccc--cccCCCCCCEEEEE
Q psy4181          16 VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW-Y------TIFKD---HIRI--MDYEIHDGMNLELY   71 (73)
Q Consensus        16 v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~-G------k~L~D---~~tL--~~y~I~~g~ti~L~   71 (73)
                      +++++..||.+|=+.+.++.  |+..-+|+.. |      ..|-+   .+.|  .++-+++|+.|.++
T Consensus        23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~   88 (94)
T cd01764          23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI   88 (94)
T ss_pred             ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence            44546789999999998877  4445555442 2      22332   3344  36889999999875

Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=86.07  E-value=0.76  Score=31.33  Aligned_cols=31  Identities=19%  Similarity=0.291  Sum_probs=22.7

Q ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc
Q psy4181          11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK   41 (73)
Q Consensus        11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~   41 (73)
                      |-.+.+.|.|..|..++|++|+++.|+|-.+
T Consensus       132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke  162 (213)
T PF14533_consen  132 GIPFLFVVKPGETFSDTKERLQKRLGVSDKE  162 (213)
T ss_dssp             EEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred             CCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence            5677788999999999999999999999654

>KOG3439|consensus

Probab=85.11  E-value=5.4  Score=25.38  Aligned_cols=50  Identities=16%  Similarity=0.141  Sum_probs=39.2

Q ss_pred             EEEEEEcCCC----CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEe
Q psy4181           2 IEITCNDRLG----KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF   51 (73)
Q Consensus         2 ~~i~vk~~~G----~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L   51 (73)
                      ++|..|...+    |.....|+|++|++.+-..|....++++..|-.+|-..-.
T Consensus        31 V~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF   84 (116)
T KOG3439|consen   31 VQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF   84 (116)
T ss_pred             EEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence            4556665333    4556789999999999999999999999999998855443

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=84.94  E-value=6.4  Score=23.70  Aligned_cols=42  Identities=12%  Similarity=0.066  Sum_probs=32.5

Q ss_pred             EEEEcCCCCEEEEEeCC-----CCcHHHHHHHHHHHhCCCC-ccEEEEE
Q psy4181           4 ITCNDRLGKKVRVKCNP-----DDTIGDLKKLIAAQTGTRW-EKIVLKK   46 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~~-----~~TV~~lK~~I~~~~gip~-~~QrLif   46 (73)
                      |.|+. .|....+.+..     +.+-..|+++|++...+|+ ..-.|.|
T Consensus         3 vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y   50 (91)
T cd06398           3 VKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTY   50 (91)
T ss_pred             EEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence            44444 67777788874     7999999999999999998 4445666

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>KOG2982|consensus

Probab=84.27  E-value=1.3  Score=33.29  Aligned_cols=52  Identities=15%  Similarity=0.193  Sum_probs=41.9

Q ss_pred             eCCCCcHHHHHHHHHHHhCCCCccEEEEE---cceEe-----cCCccccccCCCCCCEEE
Q psy4181          18 CNPDDTIGDLKKLIAAQTGTRWEKIVLKK---WYTIF-----KDHIRIMDYEIHDGMNLE   69 (73)
Q Consensus        18 v~~~~TV~~lK~~I~~~~gip~~~QrLif---~Gk~L-----~D~~tL~~y~I~~g~ti~   69 (73)
                      |.-+-||.++|.++.-+-|.-+...||++   .||.-     .-...|-.|+|++|+.+-
T Consensus       354 I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~l  413 (418)
T KOG2982|consen  354 ICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFL  413 (418)
T ss_pred             EEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEee
Confidence            45667999999999999999999999987   45432     235678889999999763

>KOG2086|consensus

Probab=84.18  E-value=1.7  Score=32.64  Aligned_cols=66  Identities=15%  Similarity=0.214  Sum_probs=50.6

Q ss_pred             EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCCCccEEEEE--cceEecC-CccccccCCCCCCEEE
Q psy4181           4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT-GTRWEKIVLKK--WYTIFKD-HIRIMDYEIHDGMNLE   69 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~-gip~~~QrLif--~Gk~L~D-~~tL~~y~I~~g~ti~   69 (73)
                      |-||-.+|+-....+.-+.||.+++.-|...- +-+..-+.|+.  =-|+|.| ..||++.|+.+-..|.
T Consensus       308 IQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq  377 (380)
T KOG2086|consen  308 IQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ  377 (380)
T ss_pred             EEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence            34566789999999999999999999998775 55555677754  4577865 7799999998765543

>PTZ00380 microtubule-associated protein (MAP); Provisional

Probab=84.01  E-value=1.7  Score=27.84  Aligned_cols=46  Identities=17%  Similarity=0.039  Sum_probs=34.3

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-cceEecCCcccc
Q psy4181          12 KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-WYTIFKDHIRIM   58 (73)
Q Consensus        12 ~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-~Gk~L~D~~tL~   58 (73)
                      +..-+-|..+.||+++..-|..+.++++++ -.+| ++..+.-..|+.
T Consensus        41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg   87 (121)
T PTZ00380         41 KVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVG   87 (121)
T ss_pred             ceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHH
Confidence            333236899999999999999999999999 4445 554555555654

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=83.49  E-value=4  Score=26.24  Aligned_cols=59  Identities=14%  Similarity=0.259  Sum_probs=39.7

Q ss_pred             EEEE-EeCC-CCcHHHHHHHHHHH----hCCCCcc------EEEEEc-----------------ceEe---cCCcccccc
Q psy4181          13 KVRV-KCNP-DDTIGDLKKLIAAQ----TGTRWEK------IVLKKW-----------------YTIF---KDHIRIMDY   60 (73)
Q Consensus        13 ~~~v-~v~~-~~TV~~lK~~I~~~----~gip~~~------QrLif~-----------------Gk~L---~D~~tL~~y   60 (73)
                      .+.+ .|+. +.||++|++.+.+.    .|+||-+      ..+++.                 ...|   +|+.||.++
T Consensus        16 ~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~   95 (122)
T PF10209_consen   16 NLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKEL   95 (122)
T ss_pred             eeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHc
Confidence            3334 3676 88999988876665    4666533      333321                 1356   788899999


Q ss_pred             CCCCCCEEEEE
Q psy4181          61 EIHDGMNLELY   71 (73)
Q Consensus        61 ~I~~g~ti~L~   71 (73)
                      ||.++.-|-++
T Consensus        96 gv~nETEiSfF  106 (122)
T PF10209_consen   96 GVENETEISFF  106 (122)
T ss_pred             CCCccceeeee
Confidence            99999887664

>COG5272 UBI4 Ubiquitin [Posttranslational modification, protein turnover, chaperones]

Probab=83.07  E-value=0.2  Score=27.56  Aligned_cols=54  Identities=6%  Similarity=-0.006  Sum_probs=43.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCcc
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIR   56 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~t   56 (73)
                      ..+++..++....++.....+-.......++..+..++++++++.|+.+...+.
T Consensus         2 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (57)
T COG5272           2 AKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRI   55 (57)
T ss_pred             CccccccccccccccchHHHHhhccchhhhhhhccChhhhhccccccccccccc
Confidence            346677788888888777777776666778889999999999999998876654

>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2

Probab=81.51  E-value=9.2  Score=22.97  Aligned_cols=68  Identities=15%  Similarity=0.168  Sum_probs=40.8

Q ss_pred             EEEEEcC-CCCEEEEEeCCCCcHHHHHHHHHHH--hCCCCc----cEEEEEcce--EecCCccccccC-----CCCCCEE
Q psy4181           3 EITCNDR-LGKKVRVKCNPDDTIGDLKKLIAAQ--TGTRWE----KIVLKKWYT--IFKDHIRIMDYE-----IHDGMNL   68 (73)
Q Consensus         3 ~i~vk~~-~G~~~~v~v~~~~TV~~lK~~I~~~--~gip~~----~QrLif~Gk--~L~D~~tL~~y~-----I~~g~ti   68 (73)
                      .|.|... .+..+++.|+++.|+.+|-+++-.+  .+..+.    +=.|-=.|+  -|..+..|.+|.     ++.+-.+
T Consensus        18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~   97 (106)
T PF00794_consen   18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP   97 (106)
T ss_dssp             EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred             EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence            3445555 6788999999999999999887766  222222    345544565  366777788775     3344444


Q ss_pred             EE
Q psy4181          69 EL   70 (73)
Q Consensus        69 ~L   70 (73)
                      +|
T Consensus        98 ~L   99 (106)
T PF00794_consen   98 HL   99 (106)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=81.45  E-value=7  Score=27.21  Aligned_cols=37  Identities=11%  Similarity=0.012  Sum_probs=28.8

Q ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE
Q psy4181           9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK   45 (73)
Q Consensus         9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi   45 (73)
                      ..+..++++++..+|-.+|-++|+++.|++|+..||.
T Consensus       187 ~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~  223 (249)
T PF12436_consen  187 PNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF  223 (249)
T ss_dssp             TT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence            3556899999999999999999999999999999985

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	73
1uh6_A	100	Solution Structure Of The Murine Ubiquitin-Like 5 P		2e-34
1p0r_A	93	Solution Structure Of Ubl5 A Human Ubiquitin-Like P		7e-34
1m94_A	93	Solution Structure Of The Yeast Ubiquitin-Like Modi		4e-21
3plu_A	93	Structure Of Hub-1 Protein In Complex With Snu66 Pe		5e-21

>pdb|1UH6|A Chain A, Solution Structure Of The Murine Ubiquitin-Like 5 Protein From Riken Cdna 0610031k06 Length = 100

Iteration: 1
 Score =  140 bits (352), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 68/73 (93%)
Query: 1   MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
           MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct: 28  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 87
Query: 61  EIHDGMNLELYYQ 73
           EIHDGMNLELYYQ
Sbjct: 88  EIHDGMNLELYYQ 100

>pdb|1P0R|A Chain A, Solution Structure Of Ubl5 A Human Ubiquitin-Like Protein Length = 93

Iteration: 1
 Score =  138 bits (348), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 68/73 (93%)
Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct: 21 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 80
Query: 61 EIHDGMNLELYYQ 73
          EIHDGMNLELYYQ
Sbjct: 81 EIHDGMNLELYYQ 93

>pdb|1M94|A Chain A, Solution Structure Of The Yeast Ubiquitin-Like Modifier Protein Hub1 Length = 93

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 56/72 (77%)
Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+  NDRLGKKVRVKC  +D++GD KK+++ Q GT+  KIVL+K  ++ KDHI + DY
Sbjct: 21 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY 80
Query: 61 EIHDGMNLELYY 72
          E+HD  NLELYY
Sbjct: 81 EVHDQTNLELYY 92

>pdb|3PLU|A Chain A, Structure Of Hub-1 Protein In Complex With Snu66 Peptide (Hindi) Length = 93

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 56/72 (77%)
Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+  NDRLGKKVRVKC  +D++GD KK+++ Q GT+  KIVL+K  ++ KDHI + DY
Sbjct: 21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY 80
Query: 61 EIHDGMNLELYY 72
          E+HD  NLELYY
Sbjct: 81 EVHDQTNLELYY 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-42
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	1e-42
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	1e-06
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	2e-06
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	7e-06
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-05
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	1e-05
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	1e-05
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	2e-05
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	2e-05
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	2e-05
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	2e-05
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	3e-05
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	3e-05
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	7e-05
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	9e-05
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	1e-04
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-04
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	1e-04
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-04
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-04
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-04
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	3e-04
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	3e-04
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	4e-04
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	5e-04
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	5e-04
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	6e-04
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	7e-04
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-04
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	9e-04

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score =  132 bits (333), Expect = 1e-42
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+  NDRLGKKVRVKC  +D++GD KK+++ Q GT+  KIVL+K  ++ KDHI + DY
Sbjct: 21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY 80

Query: 61 EIHDGMNLELYY 72
          E+HD  NLELYY
Sbjct: 81 EVHDQTNLELYY 92

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score =  132 bits (333), Expect = 1e-42
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query: 1   MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
           MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct: 28  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 87

Query: 61  EIHDGMNLELYYQ 73
           EIHDGMNLELYYQ
Sbjct: 88  EIHDGMNLELYYQ 100

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 40.9 bits (96), Expect = 1e-06
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIRIMDYEIHDG 65
          GK +++     DT+  +K+ + A  G              F      D ++  + +I   
Sbjct: 33 GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRW-----FFSGRPLTDKMKFEELKIPKD 87

Query: 66 MNLEL 70
            +++
Sbjct: 88 YVVQV 92

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 40.8 bits (96), Expect = 2e-06
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHI 55
          +I++T       K         TI  LK+ I+ +     +++VL     IF     KD  
Sbjct: 22 LIKVTVKT-PKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVL-----IFAGKILKDPD 75

Query: 56 RIMDYEIHDGMNLEL 70
           +    + DG+ + L
Sbjct: 76 SLAQCGVRDGLTVHL 90

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 39.3 bits (92), Expect = 7e-06
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHI 55
          M+ +T  +   +KV +   P +TI + K  +A        +I L     I+     +D  
Sbjct: 1  MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKL-----IYSGKVLQDSK 55

Query: 56 RIMDYEIHDG 65
           + +  + DG
Sbjct: 56 TVSECGLKDG 65

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 38.5 bits (90), Expect = 1e-05
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIRIMDYEIHD 64
                     +  +   KK I+       +++VL     IF     +D   +    I D
Sbjct: 25 PQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVL-----IFTGKILRDQDILSQRGILD 79

Query: 65 GMNLEL 70
          G  + +
Sbjct: 80 GSTVHV 85

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 38.1 bits (89), Expect = 1e-05
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          GK++ +   P D +  +K+ +  + G   ++  L        D     DY+I  G  L L
Sbjct: 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHL 81

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 38.0 bits (89), Expect = 1e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIRIMDYEIHDG 65
          GK++ +   P D +  +K+ +  + G   ++  L     I+      D     DY+I  G
Sbjct: 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRL-----IYSGKQMNDEKTAADYKILGG 64

Query: 66 MNLEL 70
            L L
Sbjct: 65 SVLHL 69

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.2 bits (89), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWE--KIVLKKWYTIFKDHIRIMDYEIHDGMNL 68
            K  VK   D T  +LK+ I + TG      K++ K    +  +   + + ++  G  +
Sbjct: 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKG---LVPEDKTLREIKVTSGAKI 82

Query: 69 EL 70
           +
Sbjct: 83 MV 84

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 10  LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIRIMDYEIHD 64
             +K       + ++   K+ I+ +  ++ +++VL     IF     KD   ++ + IHD
Sbjct: 40  PKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVL-----IFAGKILKDQDTLIQHGIHD 94

Query: 65  GMNLEL 70
           G+ + L
Sbjct: 95  GLTVHL 100

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIRIMDYEIHD 64
            +K       + ++   K+ I+ +  +  +++VL     IF     KD   +  + IHD
Sbjct: 33 PKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVL-----IFAGKILKDQDTLSQHGIHD 87

Query: 65 GMNLEL 70
          G+ + L
Sbjct: 88 GLTVHL 93

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 38.1 bits (89), Expect = 2e-05
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIRIMDYEIHD 64
             K         TI  LK+ I+ +     +++VL     IF     KD   +    + D
Sbjct: 25 PKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVL-----IFAGKILKDPDSLAQCGVRD 79

Query: 65 GMNLEL 70
          G+ + L
Sbjct: 80 GLTVHL 85

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 37.4 bits (87), Expect = 3e-05
 Identities = 9/60 (15%), Positives = 21/60 (35%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
           +    +    +T+  +K  +A+  G   E  V+       +D   +    +     LE+
Sbjct: 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEV 86

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 38.8 bits (89), Expect = 3e-05
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 2  IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIR 56
          + IT      +  +++  PD+T+  LK+ I A+ G   +   +     I+      D + 
Sbjct: 8  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKG--RDAFPVAGQKLIYAGKILSDDVP 65

Query: 57 IMDYEIHDGMNLELY 71
          I DY I +   + + 
Sbjct: 66 IRDYRIDEKNFVVVM 80

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 36.2 bits (84), Expect = 7e-05
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          GK++ +   P D +  +K+ +  + G   ++  L        D     DY+I  G  L L
Sbjct: 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHL 69

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 36.7 bits (85), Expect = 9e-05
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 13/74 (17%)

Query: 2   IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIR 56
            E   N   G+ +       D +  +K  I   TG    K  L      +     KD   
Sbjct: 39  TEWKLN---GQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKL-----QYEGIFIKDSNS 90

Query: 57  IMDYEIHDGMNLEL 70
           +  Y +  G  + L
Sbjct: 91  LAYYNMASGAVIHL 104

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          G       NP+  I  LK+ I  Q G   ++  L+    + +D + +  Y I D   L L
Sbjct: 17 GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLIL 76

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          G+ + ++  P DTI ++K  I  + G   ++  L       +D   + DY IH+   L L
Sbjct: 13 GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYL 72

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 35.7 bits (83), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIRIMDYEIHDG 65
          G++  ++   D+ +  LK+L++ +      +  L     +F      D  R+ DY I   
Sbjct: 17 GRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRL-----LFKGKALADGKRLSDYSIGPN 71

Query: 66 MNLEL 70
            L L
Sbjct: 72 SKLNL 76

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          GK + ++  P DTI ++K  I  + G   ++  L       +D   + DY I     L L
Sbjct: 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFL 72

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          GK + ++  P DTI ++K  I  + G   ++  L       +D   + DY I     L L
Sbjct: 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 70

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 1/65 (1%), Positives = 9/65 (13%), Gaps = 10/65 (15%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIRIMDYEIHDG 65
           ++          +     +       + E  +              +       +    
Sbjct: 10 VQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLF-----NKWSFEEVEVKDASLVDYVQV 64

Query: 66 MNLEL 70
               
Sbjct: 65 RQPIF 69

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWE--KIVLKKWYTIFKDHIRIMDYEIHDGMNL 68
          GK + +  +PD T+ DLK  +   T       K++ K    +  +   +   ++  G  L
Sbjct: 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKG--KVLVETSTLKQSDVGSGAKL 78

Query: 69 EL 70
           L
Sbjct: 79 ML 80

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 34.8 bits (80), Expect = 3e-04
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          GK + ++  P DTI ++K  I  + G   ++  L       +D   + DY I     L L
Sbjct: 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 34.3 bits (79), Expect = 4e-04
 Identities = 8/60 (13%), Positives = 23/60 (38%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          G+    +     T+  LK+ ++   G + +   L       +D + + +Y +     + +
Sbjct: 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFM 73

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 34.8 bits (80), Expect = 5e-04
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          GK + ++    DTI ++K  I  + G   ++  L       +D   + DY I     L L
Sbjct: 19 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHL 78

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 33.9 bits (78), Expect = 5e-04
 Identities = 8/60 (13%), Positives = 23/60 (38%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          G+    +     T+  LK+ ++   G + +   L       +D + + +Y +     + +
Sbjct: 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFM 73

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 33.9 bits (78), Expect = 6e-04
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          GK   V+  P DTI +LK  I  + G   ++  L       +D   + DY I     L L
Sbjct: 19 GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 78

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 33.4 bits (77), Expect = 7e-04
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          GK + ++  P DTI ++K  I  + G   ++  L       +D   + DY I     L L
Sbjct: 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHL 69

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 33.9 bits (77), Expect = 8e-04
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT-IFKDHIRIMD 59
          M++     R  + V V      T+G++K+++  +      K++LK W T   +D   +  
Sbjct: 9  MLDFRVEYR-DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKS 67

Query: 60 YEIHDGMNLEL 70
            +    +L +
Sbjct: 68 LHLPKNNSLYV 78

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 33.4 bits (77), Expect = 9e-04
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 10/59 (16%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIRIMDYEIHD 64
           +           + + K+ IAA      EK  L     I+     +D  ++ +Y +  
Sbjct: 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRL-----IYQGRVLQDDKKLQEYNVGG 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	100.0
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	100.0
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.97
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.97
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.96
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.96
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.96
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.96
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.96
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.96
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.96
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.96
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.96
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.96
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.96
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.96
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.96
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.96
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.95
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.95
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.95
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.95
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.95
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.95
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.95
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.95
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.95
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.95
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.95
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.95
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.95
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.95
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.95
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.95
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.95
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.95
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.95
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.95
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.95
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.95
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.94
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.94
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.94
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.9
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.94
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.94
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.94
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.94
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.94
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.94
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.94
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.94
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.94
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.93
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.93
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.93
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.93
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.93
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.93
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.93
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.93
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.93
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.92
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.92
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.92
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.92
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.92
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.92
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.92
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.92
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.92
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.92
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.91
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.91
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.91
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.91
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.9
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.9
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.9
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.89
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.89
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.89
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.88
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.88
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.87
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.86
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.85
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.84
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.83
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.83
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.82
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.81
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.79
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.78
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.77
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.72
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	99.61
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	99.55
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	99.44
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	99.31
2pjh_A	80	Protein NPL4, nuclear protein localization protein	99.29
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	99.28
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.17
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	99.14
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	99.11
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	99.04
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	98.93
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	98.89
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	98.72
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	98.59
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	98.43
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	98.31
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	97.96
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	97.94
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	97.88
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	97.84
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	97.77
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	97.76
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	97.72
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	97.63
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	97.43
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	97.42
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	97.28
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	97.27
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	97.06
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	97.04
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	96.87
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	96.81
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	96.61
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	96.53
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	95.98
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	95.67
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	95.58
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	95.58
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	95.56
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	95.54
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	95.43
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	95.38
2inc_C	83	TOUB protein; DIIRON, 4-helix bundle, carboxylate	95.13
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	95.05
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	95.02
3ge3_C	84	Toluene-4-monooxygenase system protein B; DIIRON h	94.95
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	94.92
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	94.92
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	94.91
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	94.8
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	94.74
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	94.68
1wgr_A	100	Growth factor receptor-bound protein 7; RA domain,	94.63
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	94.4
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	94.19
2kmc_A	102	Fermitin family homolog 1; kindlin, cytoskeleton,	93.95
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	93.26
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	93.01
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	92.82
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	92.62
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	92.38
2l52_A	99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	92.35
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	92.22
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	92.19
2kmm_A	73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	92.12
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	91.98
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	90.04
2hj1_A	97	Hypothetical protein; structural genomics, PSI, pr	88.98
2k9x_A	110	Tburm1, uncharacterized protein; unknown function;	88.8
1rws_A	77	Hypothetical protein PF1061; residual dipolar coup	88.58
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	88.57
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	88.32
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	88.0
2g1e_A	90	Hypothetical protein TA0895; MOAD, molybdopterin,	87.8
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	87.44
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	87.24
1y8x_B	98	Ubiquitin-activating enzyme E1C; ubiquitin-conjuga	87.01
3onh_A	127	Ubiquitin-activating enzyme E1-like; ligase, SUMO	86.86
2lgx_A	112	Fermitin family homolog 2; kindlin, membrane, inte	86.25
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	84.85
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	84.51
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	82.79
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	82.03
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	81.45
2c7h_A	86	RBBP6, retinoblastoma-binding protein 6, isoform 3	81.17

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=100.00  E-value=3.5e-37  Score=187.93  Aligned_cols=72  Identities=60%  Similarity=0.959  Sum_probs=71.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |||||||+++|++++++|+|+|||++||++|++++|+||++|||+|+|++|+|+.||++|+|++|+||||+|
T Consensus        21 mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~   92 (93)
T 3plu_A           21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   92 (93)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=100.00  E-value=1.9e-34  Score=177.64  Aligned_cols=73  Identities=89%  Similarity=1.456  Sum_probs=72.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||+||||+++|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|+||||+|+
T Consensus        28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~~  100 (100)
T 1uh6_A           28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ  100 (100)
T ss_dssp             EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEeC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999996

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=149.97  Aligned_cols=73  Identities=12%  Similarity=0.175  Sum_probs=71.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      .|+||||+++|++++++|+|++||++||++|++++|+||++|||+|+|++|+|+.||++|||++|++|||+.|
T Consensus         4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r   76 (79)
T 3phx_B            4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   76 (79)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            3899999999999999999999999999999999999999999999999999999999999999999999865

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.8e-31  Score=159.29  Aligned_cols=72  Identities=17%  Similarity=0.300  Sum_probs=69.1

Q ss_pred             CEEEEEEcCCCCEEEEEeC--CCCcHHHHHHHH-HHHhCCCCccEEEEEcceEecCCccccccCC-CCCCEEEEEe
Q psy4181           1 MIEITCNDRLGKKVRVKCN--PDDTIGDLKKLI-AAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI-HDGMNLELYY   72 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~--~~~TV~~lK~~I-~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I-~~g~ti~L~~   72 (73)
                      ||+||||+++|++++++|+  |++||++||++| ++++|+|+++|||||+||+|+|+.||++|+| ++|++|+|.-
T Consensus         1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~   76 (87)
T 2lxa_A            1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI   76 (87)
T ss_dssp             CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEc
Confidence            9999999999999999866  999999999999 9999999999999999999999999999999 7999999864

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.96  E-value=2.1e-29  Score=149.32  Aligned_cols=72  Identities=13%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceE-ecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI-FKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~-L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+||||+++|++++++|+|++||++||++|++++|+|+++|||+|+|++ |+|+.||++|||++|++|||+.+
T Consensus        11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A           11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred             eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence            8999999999999999999999999999999999999999999999999 99999999999999999999864

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.96  E-value=3.1e-29  Score=148.30  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=70.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+||||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.||++||| +|++|||+.+
T Consensus         5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~   76 (90)
T 4dwf_A            5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER   76 (90)
T ss_dssp             EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred             EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEec
Confidence            59999999999999999999999999999999999999999999999999999999999999 8999999864

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-29  Score=154.95  Aligned_cols=72  Identities=19%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ||+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.||++|||++|++|||+.
T Consensus         1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~   72 (106)
T 3m62_B            1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMV   72 (106)
T ss_dssp             --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred             CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999975

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.96  E-value=2.6e-29  Score=145.46  Aligned_cols=72  Identities=11%  Similarity=0.138  Sum_probs=70.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~   75 (79)
T 2uyz_B            4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE   75 (79)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999864

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.96  E-value=3.1e-29  Score=148.94  Aligned_cols=72  Identities=21%  Similarity=0.292  Sum_probs=70.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|++++++|+|++||++||++|++++|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r   72 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA   72 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence            799999999999999999999999999999999999999999999999999999999999999999999864

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.96  E-value=5.7e-29  Score=143.50  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=70.4

Q ss_pred             CEEEEEEcCCCCEE-EEE-eCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKV-RVK-CNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~-~v~-v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      .|+|+||+++|+++ +++ |++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus         2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r   76 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR   76 (78)
T ss_dssp             CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred             cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            48999999999996 999 99999999999999999999999999999999999999999999999999999875

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.96  E-value=5.3e-29  Score=146.82  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=69.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++||| +|+||||+-|
T Consensus        17 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R   88 (88)
T 4eew_A           17 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER   88 (88)
T ss_dssp             EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred             eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence            48999999999999999999999999999999999999999999999999999999999999 8999999865

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.96  E-value=4.3e-29  Score=150.87  Aligned_cols=73  Identities=11%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+||||+++|++++++|++++||++||++|++++|+|+++|||+|+|++|+|+.||++|+|++|++|||+.+
T Consensus        21 ~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~   93 (97)
T 1wyw_B           21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE   93 (97)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred             cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999874

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.96  E-value=1.8e-28  Score=139.47  Aligned_cols=72  Identities=21%  Similarity=0.292  Sum_probs=70.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|++++++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~   72 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA   72 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            799999999999999999999999999999999999999999999999999999999999999999999875

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.96  E-value=2.4e-28  Score=142.62  Aligned_cols=73  Identities=22%  Similarity=0.260  Sum_probs=70.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH---hCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ---TGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~---~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|+++.++|++++||++||++|+++   +|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus         5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~   80 (85)
T 2wyq_A            5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT   80 (85)
T ss_dssp             CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred             eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence            6999999999999999999999999999999998   899999999999999999999999999999999999753

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.96  E-value=3.7e-29  Score=148.40  Aligned_cols=73  Identities=12%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|++++++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus         4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~   76 (88)
T 2hj8_A            4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   76 (88)
T ss_dssp             EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            4999999999999999999999999999999999999999999999999999999999999999999999864

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.96  E-value=2.4e-28  Score=145.33  Aligned_cols=73  Identities=23%  Similarity=0.313  Sum_probs=70.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      .|+|+||+.+|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.|
T Consensus        17 ~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r   89 (91)
T 3v6c_B           17 SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   89 (91)
T ss_dssp             SEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred             eEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999864

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.96  E-value=1.6e-28  Score=143.86  Aligned_cols=73  Identities=21%  Similarity=0.289  Sum_probs=70.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      .|+|+||+++|++++++|++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus        12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r   84 (88)
T 3dbh_I           12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLR   84 (88)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCC
T ss_pred             cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999764

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.96  E-value=1.9e-28  Score=142.54  Aligned_cols=73  Identities=23%  Similarity=0.336  Sum_probs=70.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+||||+++|++++++|++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|+|++|++|||..+
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r   75 (85)
T 3n3k_B            3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK   75 (85)
T ss_dssp             -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999864

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.95  E-value=5.3e-28  Score=140.46  Aligned_cols=73  Identities=23%  Similarity=0.282  Sum_probs=71.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|++++++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|+|++|++|||+.+
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r   75 (85)
T 3mtn_B            3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR   75 (85)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred             eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999864

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.95  E-value=4.5e-28  Score=142.84  Aligned_cols=73  Identities=18%  Similarity=0.140  Sum_probs=70.5

Q ss_pred             CEEEEEEcCCC-CEEEE-EeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLG-KKVRV-KCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G-~~~~v-~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+||||+++| +++++ +|++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus         7 ~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   81 (89)
T 1wy8_A            7 GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR   81 (89)
T ss_dssp             CEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred             cEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence            69999999999 79999 599999999999999999999999999999999999999999999999999999875

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.95  E-value=3.4e-28  Score=142.69  Aligned_cols=73  Identities=23%  Similarity=0.223  Sum_probs=71.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|+|++|++|||..+
T Consensus         7 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~   79 (87)
T 1wh3_A            7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK   79 (87)
T ss_dssp             SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEe
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999864

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.95  E-value=6.3e-28  Score=143.23  Aligned_cols=72  Identities=25%  Similarity=0.312  Sum_probs=69.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|+|+.+
T Consensus        10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r   81 (88)
T 1sif_A           10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   81 (88)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred             eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999864

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.95  E-value=2.1e-28  Score=154.43  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=68.1

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCC-------CCCEEEEEeC
Q psy4181           2 IEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIH-------DGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~-------~g~ti~L~~~   73 (73)
                      |++||+...|+ ++.++|+|++||++||++|++++|||+++|||+|+||+|+|+.||++|||+       +++||||++|
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            67888888887 599999999999999999999999999999999999999999999999999       7999999875

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.95  E-value=1.5e-27  Score=135.66  Aligned_cols=72  Identities=24%  Similarity=0.318  Sum_probs=70.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|+++.++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~   72 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            799999999999999999999999999999999999999999999999999999999999999999999864

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.95  E-value=7.4e-28  Score=147.13  Aligned_cols=72  Identities=15%  Similarity=0.270  Sum_probs=67.4

Q ss_pred             CEEEEEEcCCCCEEEE--EeCCCCcHHHHHHHH-HHHhCCCCccEEEEEcceEecCCccccccCC-CCCCEEEEEe
Q psy4181           1 MIEITCNDRLGKKVRV--KCNPDDTIGDLKKLI-AAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI-HDGMNLELYY   72 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v--~v~~~~TV~~lK~~I-~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I-~~g~ti~L~~   72 (73)
                      .|+|+||+++|+++++  +|+|++||++||++| ++.+|+|+++|||+|+|++|+|+.||++||| ++|++|||.-
T Consensus        19 ~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv   94 (98)
T 4a20_A           19 AVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI   94 (98)
T ss_dssp             CEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence            3899999999998777  566999999999999 8899999999999999999999999999999 9999999974

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.95  E-value=9.8e-28  Score=138.48  Aligned_cols=73  Identities=19%  Similarity=0.268  Sum_probs=70.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+.+|+.++++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus         7 ~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   79 (81)
T 2dzi_A            7 GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK   79 (81)
T ss_dssp             SEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred             cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            5999999999999999999999999999999999999999999999999999999999999999999999864

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.8e-28  Score=145.24  Aligned_cols=73  Identities=22%  Similarity=0.280  Sum_probs=70.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus        22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r   94 (98)
T 4hcn_B           22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   94 (98)
T ss_dssp             CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999854

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.95  E-value=1.5e-27  Score=142.23  Aligned_cols=72  Identities=24%  Similarity=0.322  Sum_probs=70.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r   73 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   73 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999864

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.95  E-value=1.6e-27  Score=143.67  Aligned_cols=72  Identities=17%  Similarity=0.200  Sum_probs=69.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCC-ccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDH-IRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~-~tL~~y~I~~g~ti~L~~~   73 (73)
                      .|+||||+++| +++++|++++||++||++|++++|+|+++|||+|+|++|+|+ .||++|||++|++|||+.+
T Consensus        15 ~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r   87 (94)
T 2kan_A           15 KIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK   87 (94)
T ss_dssp             CEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred             CEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence            48999999988 999999999999999999999999999999999999999999 9999999999999999864

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.95  E-value=1.9e-27  Score=149.35  Aligned_cols=73  Identities=15%  Similarity=0.154  Sum_probs=68.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHH------HhCC--CCccEEEEEcceEecCCccccccCCCCC--CEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAA------QTGT--RWEKIVLKKWYTIFKDHIRIMDYEIHDG--MNLEL   70 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~------~~gi--p~~~QrLif~Gk~L~D~~tL~~y~I~~g--~ti~L   70 (73)
                      .|+|+||+++|++++++|+|++||++||++|++      ++|+  |+++|||||+||+|+|+.||++|+|+.+  +||||
T Consensus        16 ~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhL   95 (116)
T 1wgh_A           16 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL   95 (116)
T ss_dssp             SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred             eEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence            489999999999999999999999999999999      7786  6999999999999999999999999877  68999


Q ss_pred             EeC
Q psy4181          71 YYQ   73 (73)
Q Consensus        71 ~~~   73 (73)
                      +.|
T Consensus        96 vlr   98 (116)
T 1wgh_A           96 VAR   98 (116)
T ss_dssp             EEC
T ss_pred             Ecc
Confidence            864

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.95  E-value=2.3e-27  Score=142.50  Aligned_cols=71  Identities=15%  Similarity=0.241  Sum_probs=69.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH---hCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ---TGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~---~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+||+++|+.+.++|++++||++||++|++.   +|+|+++|||+|+|+.|+|+.||++|||++|++|||..
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~   74 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMV   74 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence            799999999999999999999999999999999   89999999999999999999999999999999999975

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.95  E-value=2.9e-27  Score=135.36  Aligned_cols=71  Identities=24%  Similarity=0.295  Sum_probs=68.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+ +|+.++++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            8999999 9999999999999999999999999999999999999999999999999999999999999753

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.95  E-value=7.7e-28  Score=151.91  Aligned_cols=72  Identities=13%  Similarity=0.128  Sum_probs=69.2

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCC-------CCEEEEEeC
Q psy4181           2 IEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHD-------GMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~-------g~ti~L~~~   73 (73)
                      |.+|++...++ ++.++|+|++||.+||++|++++|+||++|||||+|++|+|+.||++|||++       ++||||++|
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            67899998888 8889999999999999999999999999999999999999999999999999       999999986

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.95  E-value=2.2e-27  Score=150.65  Aligned_cols=73  Identities=15%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHH------HhCCC--CccEEEEEcceEecCCccccccCCCCCC--EEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAA------QTGTR--WEKIVLKKWYTIFKDHIRIMDYEIHDGM--NLEL   70 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~------~~gip--~~~QrLif~Gk~L~D~~tL~~y~I~~g~--ti~L   70 (73)
                      ||+|+||+++|++++++|+|++||++||++|++      ++|+|  +++|||||+||+|+|+.||++|+|++|+  ||||
T Consensus        17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhl   96 (125)
T 2gow_A           17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL   96 (125)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEE
T ss_pred             eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence            599999999999999999999999999999999      88995  9999999999999999999999999776  7899


Q ss_pred             EeC
Q psy4181          71 YYQ   73 (73)
Q Consensus        71 ~~~   73 (73)
                      +.|
T Consensus        97 v~r   99 (125)
T 2gow_A           97 VAR   99 (125)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            864

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.95  E-value=5.8e-27  Score=144.68  Aligned_cols=73  Identities=23%  Similarity=0.314  Sum_probs=71.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus        35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r  107 (111)
T 3vdz_A           35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  107 (111)
T ss_dssp             CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred             cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            5999999999999999999999999999999999999999999999999999999999999999999999865

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.95  E-value=1.9e-27  Score=145.57  Aligned_cols=73  Identities=12%  Similarity=0.123  Sum_probs=70.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus        23 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~   95 (106)
T 1ttn_A           23 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS   95 (106)
T ss_dssp             SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred             eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            5999999999999999999999999999999999999999999999999999999999999999999999864

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.95  E-value=4.8e-27  Score=150.62  Aligned_cols=72  Identities=13%  Similarity=0.189  Sum_probs=70.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+||||+++|++++++|++++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|+||||..+
T Consensus        82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r  153 (159)
T 3rt3_B           82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR  153 (159)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999864

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.95  E-value=1e-27  Score=146.63  Aligned_cols=70  Identities=16%  Similarity=0.203  Sum_probs=65.9

Q ss_pred             EEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHH-hCCCC-ccEEEEEcceEecCCcccccc--CCCCCCEEEEE
Q psy4181           2 IEITCNDRLGK--KVRVKCNPDDTIGDLKKLIAAQ-TGTRW-EKIVLKKWYTIFKDHIRIMDY--EIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~--~~~v~v~~~~TV~~lK~~I~~~-~gip~-~~QrLif~Gk~L~D~~tL~~y--~I~~g~ti~L~   71 (73)
                      |+|+||+++|+  +++++|+|++||++||++|+++ +|+|| ++|||||+||+|+|+.||++|  +|++|+||||+
T Consensus        24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            89999999998  7899999999999999999996 67665 999999999999999999999  99999999985

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.95  E-value=1.6e-27  Score=142.42  Aligned_cols=73  Identities=15%  Similarity=0.117  Sum_probs=69.3

Q ss_pred             CEEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHHh--CCCCccEEEEEcceEecCCcccccc--CCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGK--KVRVKCNPDDTIGDLKKLIAAQT--GTRWEKIVLKKWYTIFKDHIRIMDY--EIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~--~~~v~v~~~~TV~~lK~~I~~~~--gip~~~QrLif~Gk~L~D~~tL~~y--~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|+  +++++|++++||++||++|++++  |+|+++|||+|+|++|+|+.||++|  +|++|++|||+.+
T Consensus         7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~   85 (93)
T 1wgd_A            7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence            589999999998  78888889999999999999998  9999999999999999999999999  9999999999853

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.95  E-value=4.3e-27  Score=145.84  Aligned_cols=70  Identities=16%  Similarity=0.168  Sum_probs=67.3

Q ss_pred             EEEEEEcCCC--CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCC-CCCCEEEEE
Q psy4181           2 IEITCNDRLG--KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI-HDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G--~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I-~~g~ti~L~   71 (73)
                      |+|+|++..+  .+++++|+|++||++||++|++++||||++|||+|+|+.++|++||++||| ++|+++||+
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~   97 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY   97 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence            7899999985  799999999999999999999999999999999999999999999999999 699999997

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.94  E-value=2.5e-27  Score=142.15  Aligned_cols=71  Identities=13%  Similarity=0.107  Sum_probs=68.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+||||+  |++++++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.|
T Consensus        19 ~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r   89 (93)
T 2l7r_A           19 SMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR   89 (93)
T ss_dssp             -CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred             cEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            58999998  999999999999999999999999999999999999999999999999999999999999864

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.94  E-value=3.4e-27  Score=150.29  Aligned_cols=73  Identities=14%  Similarity=0.170  Sum_probs=68.5

Q ss_pred             CEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHH-----HHHhCCCC--ccEEEEEcceEecCCccccccCCCCC------C
Q psy4181           1 MIEITCNDRLGKKV-RVKCNPDDTIGDLKKLI-----AAQTGTRW--EKIVLKKWYTIFKDHIRIMDYEIHDG------M   66 (73)
Q Consensus         1 ~~~i~vk~~~G~~~-~v~v~~~~TV~~lK~~I-----~~~~gip~--~~QrLif~Gk~L~D~~tL~~y~I~~g------~   66 (73)
                      .|+|+||+++|+.+ +++++|++||++||++|     ++++|+|+  ++|||||+||+|+|+.||++|+|++|      +
T Consensus        16 ~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~   95 (126)
T 1se9_A           16 QLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVT   95 (126)
T ss_dssp             CEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCE
T ss_pred             cEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcE
Confidence            38999999999999 79999999999999999     67889997  89999999999999999999999999      7


Q ss_pred             EEEEEeC
Q psy4181          67 NLELYYQ   73 (73)
Q Consensus        67 ti~L~~~   73 (73)
                      |+||+.|
T Consensus        96 tmhlVlr  102 (126)
T 1se9_A           96 TMHVIIQ  102 (126)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            8999875

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.94  E-value=7.9e-27  Score=140.29  Aligned_cols=72  Identities=24%  Similarity=0.322  Sum_probs=70.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|+++.++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|+|..+
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~   72 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            799999999999999999999999999999999999999999999999999999999999999999999864

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.90  E-value=4e-29  Score=143.31  Aligned_cols=72  Identities=13%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+||||+++|+++.++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r   72 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR   72 (76)
Confidence            899999999999999999999999999999999999999999999999999999999999999999999764

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.94  E-value=1.6e-27  Score=147.48  Aligned_cols=72  Identities=18%  Similarity=0.164  Sum_probs=68.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC---------------ccEEEEEcceEec-CCccccccCCCC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW---------------EKIVLKKWYTIFK-DHIRIMDYEIHD   64 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~---------------~~QrLif~Gk~L~-D~~tL~~y~I~~   64 (73)
                      +|+|+||+++|++++|+|+|++||++||++|++++|+|+               ++|||||+|++|+ |..||++|||++
T Consensus         7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~   86 (105)
T 1v2y_A            7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN   86 (105)
T ss_dssp             SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred             cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence            599999999999999999999999999999999999988               4679999999997 679999999999


Q ss_pred             CCEEEEEe
Q psy4181          65 GMNLELYY   72 (73)
Q Consensus        65 g~ti~L~~   72 (73)
                      |++|||+-
T Consensus        87 g~~l~lv~   94 (105)
T 1v2y_A           87 RDEVSFIK   94 (105)
T ss_dssp             SEEEEEEE
T ss_pred             CCEEEEEe
Confidence            99999974

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.94  E-value=3e-27  Score=145.47  Aligned_cols=70  Identities=11%  Similarity=-0.016  Sum_probs=64.3

Q ss_pred             EEEEEEcCC----CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRL----GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~----G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ..|.|+.++    |++++++|+|++||++||++|++++|+||++|||||+||+|+|+.||++|||++|++|++.
T Consensus        16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl   89 (100)
T 1wju_A           16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL   89 (100)
T ss_dssp             EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred             EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE
Confidence            345666666    8899999999999999999999999999999999999999999999999999999999653

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.94  E-value=1.1e-26  Score=152.63  Aligned_cols=72  Identities=22%  Similarity=0.295  Sum_probs=70.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |||+||+++|++++++|++++||.+||++|++++|+||++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr   72 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence            799999999999999999999999999999999999999999999999999999999999999999999864

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.94  E-value=8.4e-27  Score=149.49  Aligned_cols=71  Identities=15%  Similarity=0.197  Sum_probs=69.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE-E-cceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK-K-WYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi-f-~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+||+++|++++++|+|++||++||++|++..|+||++|||+ | +|++|+|+.||++|||++|++|||..
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~   75 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVV   75 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999 9 89999999999999999999999975

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.94  E-value=9.4e-27  Score=141.64  Aligned_cols=72  Identities=22%  Similarity=0.265  Sum_probs=69.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||+|+||+++|+ +.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus        22 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r   93 (100)
T 1yqb_A           22 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK   93 (100)
T ss_dssp             EEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred             eEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEc
Confidence            599999999986 799999999999999999999999999999999999999999999999999999999864

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.94  E-value=4.7e-27  Score=140.65  Aligned_cols=72  Identities=15%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+. |+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus        17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~   88 (96)
T 1wx8_A           17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   88 (96)
T ss_dssp             EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEe
Confidence            589999998 999999999999999999999999999999999999999999999999999999999999753

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.94  E-value=5.1e-26  Score=138.45  Aligned_cols=72  Identities=19%  Similarity=0.309  Sum_probs=69.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||++ |+.+.++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus        25 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~   96 (101)
T 2klc_A           25 IMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK   96 (101)
T ss_dssp             CEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred             eEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence            589999998 999999999999999999999999999999999999999999999999999999999999863

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.2e-26  Score=141.64  Aligned_cols=72  Identities=22%  Similarity=0.286  Sum_probs=70.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ++|+||+++|++++++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus        10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~   81 (114)
T 2kdi_A           10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLR   81 (114)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEEC
T ss_pred             EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence            589999999999999999999999999999999999999999999999999999999999999999999864

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.94  E-value=8.1e-26  Score=139.23  Aligned_cols=73  Identities=23%  Similarity=0.314  Sum_probs=71.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus        35 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r  107 (111)
T 2ojr_A           35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  107 (111)
T ss_dssp             CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred             eEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            5999999999999999999999999999999999999999999999999999999999999999999999875

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.93  E-value=5.4e-26  Score=147.84  Aligned_cols=73  Identities=23%  Similarity=0.312  Sum_probs=70.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+||||+.+|++++++|++++||.+||++|++++|+|+++|||+|+|++|+|+.||++|||++|++|||..+
T Consensus        20 ~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~   92 (172)
T 3u30_A           20 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   92 (172)
T ss_dssp             CEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred             cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999753

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.93  E-value=9.7e-27  Score=139.33  Aligned_cols=70  Identities=17%  Similarity=0.135  Sum_probs=66.0

Q ss_pred             CEEEEEEcCCCCEE--EE-EeCCCCcHHHHHHHHHHH-hCCCCccEEEEEc--ceEecCCccccccCCCCCCEEEE
Q psy4181           1 MIEITCNDRLGKKV--RV-KCNPDDTIGDLKKLIAAQ-TGTRWEKIVLKKW--YTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         1 ~~~i~vk~~~G~~~--~v-~v~~~~TV~~lK~~I~~~-~gip~~~QrLif~--Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      ||+|+||+++|+..  ++ +|+|++||++||++|+++ +|+||++|||+|.  |++|+|+.||++|||++|+|||+
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            79999999999886  58 999999999999999994 8999999999987  99999999999999999999986

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.93  E-value=4.2e-26  Score=138.76  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             CEEEEEEcCCC----CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCC-ccccccCCCCCCEEEEEe
Q psy4181           1 MIEITCNDRLG----KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDH-IRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         1 ~~~i~vk~~~G----~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~-~tL~~y~I~~g~ti~L~~   72 (73)
                      ||+|+||+++|    ++++++|++++||++||++|++++|+|+++|||+|+|++|+|+ .||++|||++|++|||.-
T Consensus         7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~   83 (102)
T 1v5o_A            7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ   83 (102)
T ss_dssp             CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred             eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence            79999999765    7999999999999999999999999999999999999999988 699999999999999964

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.93  E-value=1.3e-25  Score=141.67  Aligned_cols=72  Identities=21%  Similarity=0.346  Sum_probs=69.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||++ |+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus        32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~  103 (125)
T 1j8c_A           32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (125)
T ss_dssp             CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence            599999998 999999999999999999999999999999999999999999999999999999999999864

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.93  E-value=4.6e-26  Score=139.06  Aligned_cols=72  Identities=22%  Similarity=0.265  Sum_probs=69.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||+|+||+.+|+ +.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus        17 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~   88 (106)
T 1wx7_A           17 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK   88 (106)
T ss_dssp             EEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEEC
T ss_pred             eEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence            699999999886 799999999999999999999999999999999999999999999999999999999864

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.93  E-value=5.4e-26  Score=139.88  Aligned_cols=73  Identities=21%  Similarity=0.290  Sum_probs=70.3

Q ss_pred             CEEEEEEcC---CCCEEEEEeCC-CCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDR---LGKKVRVKCNP-DDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~---~G~~~~v~v~~-~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      .|+||||++   +|+.++++|+| ++||.+||++|++.+|+|+++|||+|+|++|+|+.||++|||++|++|||..+
T Consensus        27 ~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r  103 (111)
T 1we6_A           27 PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             CEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred             cEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence            489999999   89999999998 99999999999999999999999999999999999999999999999999864

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.93  E-value=7.2e-26  Score=151.87  Aligned_cols=72  Identities=24%  Similarity=0.290  Sum_probs=70.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||||||+++|++++++|+|++||.+||++|++++|+|+++|||+|+|++|+|+.||++|+|++|+||||+.+
T Consensus       106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr  177 (189)
T 3q3f_A          106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  177 (189)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred             eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999753

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=145.76  Aligned_cols=72  Identities=24%  Similarity=0.322  Sum_probs=69.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+||||+.+|++++++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.||++|||++|+||||..+
T Consensus        97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r  168 (172)
T 3u30_A           97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  168 (172)
T ss_dssp             EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred             ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence            789999999999999999999999999999999999999999999999999999999999999999999764

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.93  E-value=1.9e-27  Score=149.81  Aligned_cols=72  Identities=22%  Similarity=0.295  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+||||+++|++++++|++++||++||++|++.+|+||++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r   72 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (128)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence            799999999999999999999999999999999999999999999999999999999999999999999753

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.92  E-value=5.2e-25  Score=138.75  Aligned_cols=72  Identities=24%  Similarity=0.322  Sum_probs=70.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|++++++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~   72 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEee
Confidence            799999999999999999999999999999999999999999999999999999999999999999999763

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.8e-26  Score=138.82  Aligned_cols=70  Identities=24%  Similarity=0.299  Sum_probs=67.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+||+ +|+++.++|++++||++||++|++++|+|+++|||+|+|+.|+|+.||++|||++|++|||+-
T Consensus        29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~   98 (101)
T 3m63_B           29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK   98 (101)
T ss_dssp             CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence            6799998 999999999999999999999999999999999999999999999999999999999999963

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.92  E-value=1.3e-25  Score=134.01  Aligned_cols=70  Identities=19%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             CEEEEEEcCCCCEEEE-EeCCCCcHHHHHHHHHHHhCCCCccEEEE---EcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRV-KCNPDDTIGDLKKLIAAQTGTRWEKIVLK---KWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v-~v~~~~TV~~lK~~I~~~~gip~~~QrLi---f~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|+|+||. .|+++++ +|++++||.+||++|++++|+|+++|||+   |+|++|+|+.+|++|||++|++|||.
T Consensus         7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~   80 (90)
T 1v5t_A            7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM   80 (90)
T ss_dssp             SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEE
T ss_pred             eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEE
Confidence            68999997 8999999 99999999999999999999999999999   99999999999999999999999996

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=4.4e-25  Score=139.23  Aligned_cols=70  Identities=10%  Similarity=0.134  Sum_probs=66.8

Q ss_pred             EEEEEE-cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCN-DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk-~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.|.|| .+.|..++++++++.||++||+++++..|+|+++|||||+||.|+|++||++|||++|+||||+
T Consensus        16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLv   86 (118)
T 2daf_A           16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVE   86 (118)
T ss_dssp             EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEE
T ss_pred             EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEE
Confidence            567777 7789999999999999999999999999999999999999999999999999999999999997

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.92  E-value=2.8e-25  Score=132.84  Aligned_cols=70  Identities=14%  Similarity=0.104  Sum_probs=67.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCC-ccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDH-IRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~-~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|+.+.++|++++||++||++|++++   +++|||+|+|++|+|+ .||++|||++|++|||+.+
T Consensus         7 ~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~   77 (95)
T 1wia_A            7 GINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS   77 (95)
T ss_dssp             SEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence            59999999999999999999999999999999998   9999999999999999 9999999999999999753

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.92  E-value=1.2e-25  Score=135.98  Aligned_cols=69  Identities=19%  Similarity=0.123  Sum_probs=66.3

Q ss_pred             CEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKV-RVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~-~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ||+|+||. .|+++ .++|++++||.+||++|++..|+|+++|||+|.|++|+|+ +|++|||++|++|||.
T Consensus         7 ~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~   76 (96)
T 1wgg_A            7 GYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMM   76 (96)
T ss_dssp             EEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECC
T ss_pred             EEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEE
Confidence            69999996 79999 6999999999999999999999999999999999999999 9999999999999985

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.92  E-value=1.2e-24  Score=137.15  Aligned_cols=72  Identities=24%  Similarity=0.322  Sum_probs=70.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|++++++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus        77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  148 (152)
T 3b08_A           77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  148 (152)
T ss_dssp             EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            789999999999999999999999999999999999999999999999999999999999999999999875

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.92  E-value=7.3e-27  Score=152.07  Aligned_cols=72  Identities=22%  Similarity=0.295  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||||||+++|++++++|+|++||++||++|++.+|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr   72 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (152)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence            799999999999999999999999999999999999999999999999999999999999999999999753

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.92  E-value=1.4e-24  Score=129.14  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=66.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCC-----CcHHHHHHHHHHHhCCCCccEEEEEcceEecC-CccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPD-----DTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKD-HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~-----~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D-~~tL~~y~I~~g~ti~L~   71 (73)
                      ||+|+||+ .|+.+.++|+++     +||.+||++|+++.|+|+++|||+|+|+.|+| +.+|++|||++|++|||.
T Consensus         7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~   82 (92)
T 1wxv_A            7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI   82 (92)
T ss_dssp             SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred             eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence            79999999 599999999995     99999999999999999999999999999998 558999999999999996

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.92  E-value=1.2e-24  Score=128.74  Aligned_cols=69  Identities=19%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      +++++.+|+++.++|++++||++||++|++..|+||++|||+|+|++|+|+.||++|||++|++|+|..
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~   82 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA   82 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence            577888999999999999999999999999999999999999999999999999999999999999874

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.91  E-value=1.3e-24  Score=131.91  Aligned_cols=71  Identities=20%  Similarity=0.297  Sum_probs=65.1

Q ss_pred             CEEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc--ce---Ee-cCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGK--KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW--YT---IF-KDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~--~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~--Gk---~L-~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ++.|+|+..++.  .++++++|++||++||++|++++||||++|||+|.  |+   +| +|..||++|||++|+||||+
T Consensus        15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv   93 (95)
T 2kjr_A           15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV   93 (95)
T ss_dssp             EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred             eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence            478999988775  89999999999999999999999999999999997  45   55 89999999999999999996

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.91  E-value=1.6e-24  Score=134.13  Aligned_cols=73  Identities=19%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             CEEEEEEcC----------CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181           1 MIEITCNDR----------LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         1 ~~~i~vk~~----------~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      .|+|+|+.+          +|++++++|++++||.+||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||
T Consensus        25 ~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~l  104 (115)
T 1we7_A           25 PVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHL  104 (115)
T ss_dssp             CEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEE
T ss_pred             CEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEE
Confidence            378889886          4889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeC
Q psy4181          71 YYQ   73 (73)
Q Consensus        71 ~~~   73 (73)
                      +.+
T Consensus       105 v~r  107 (115)
T 1we7_A          105 ALK  107 (115)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            864

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.91  E-value=1.5e-24  Score=132.91  Aligned_cols=71  Identities=20%  Similarity=0.114  Sum_probs=67.0

Q ss_pred             EEEEEEcCCC---CEEEEE--------eCCC-CcHHHHHHHHHHHh--CCCCcc-EEEEEcceEecCCccccccCCCCCC
Q psy4181           2 IEITCNDRLG---KKVRVK--------CNPD-DTIGDLKKLIAAQT--GTRWEK-IVLKKWYTIFKDHIRIMDYEIHDGM   66 (73)
Q Consensus         2 ~~i~vk~~~G---~~~~v~--------v~~~-~TV~~lK~~I~~~~--gip~~~-QrLif~Gk~L~D~~tL~~y~I~~g~   66 (73)
                      |+|+||+.+|   ++++++        |+++ +||.+||++|++++  |+|+++ |||+|+|+.|+|+.||++|||++|+
T Consensus        13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~   92 (107)
T 1x1m_A           13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS   92 (107)
T ss_dssp             CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred             eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence            7899999999   899999        4554 99999999999999  999999 9999999999999999999999999


Q ss_pred             EEEEEe
Q psy4181          67 NLELYY   72 (73)
Q Consensus        67 ti~L~~   72 (73)
                      +|||+-
T Consensus        93 ~i~lv~   98 (107)
T 1x1m_A           93 TVHVLR   98 (107)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999975

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=1.1e-24  Score=133.74  Aligned_cols=70  Identities=14%  Similarity=0.141  Sum_probs=66.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE--cceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK--WYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif--~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |++|+++.+|++++++|++++||++||++|++++||||++|||+|  +|+ |+|+.+|++|+|++|+||||+.
T Consensus         9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl   80 (100)
T 2dzm_A            9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLT   80 (100)
T ss_dssp             EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECC
T ss_pred             eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEe
Confidence            788999999999999999999999999999999999999999997  676 9999999999999999999974

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.90  E-value=7.2e-24  Score=126.51  Aligned_cols=70  Identities=11%  Similarity=0.112  Sum_probs=62.8

Q ss_pred             EEEEEE--cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-------cceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCN--DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-------WYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk--~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-------~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +.|.|.  ...++.....+++++||++||++|++++||||++|||+|       .|+.|+|+.||++|||++|+||||+
T Consensus         3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv   81 (86)
T 4b6w_A            3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV   81 (86)
T ss_dssp             EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred             EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence            455554  345677889999999999999999999999999999996       6999999999999999999999996

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.90  E-value=1.8e-24  Score=130.34  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=65.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|+|+||. .|+++.++|++++||.+||++|++..|+|+++|||+|.|++| |+.+|++|+|++|++|||.
T Consensus        17 ~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv   85 (95)
T 1v86_A           17 LVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVV   85 (95)
T ss_dssp             CEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEEC
T ss_pred             eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEE
Confidence            58999994 799999999999999999999999999999999999999999 4559999999999999985

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.90  E-value=2.1e-23  Score=148.30  Aligned_cols=73  Identities=23%  Similarity=0.311  Sum_probs=70.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||+++|+++.++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+-|
T Consensus       233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR  305 (307)
T 3ai5_A          233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  305 (307)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999854

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.89  E-value=1.8e-23  Score=127.43  Aligned_cols=70  Identities=13%  Similarity=0.192  Sum_probs=63.6

Q ss_pred             EEEEEEcCCC--CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc---eE----ecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLG--KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY---TI----FKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G--~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G---k~----L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +.|+|+..+.  +.++++++|++||++||++|++++||||++|||+|.|   +.    ++|..||++|||++|++|||+
T Consensus        15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv   93 (97)
T 2kj6_A           15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII   93 (97)
T ss_dssp             EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred             EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence            6788887655  4899999999999999999999999999999999988   33    499999999999999999986

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.89  E-value=2.7e-25  Score=149.37  Aligned_cols=67  Identities=15%  Similarity=0.149  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||||||+++|++++++|+|++||.+||++|++.+|||+++|||||+|++|+|+.||+     +|+||||+.|
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR   67 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK   67 (189)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999998     9999999864

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.89  E-value=5.5e-24  Score=130.69  Aligned_cols=71  Identities=24%  Similarity=0.304  Sum_probs=66.7

Q ss_pred             EEEEEEcCCCCEEEEEeC-CCCcHHHHHHHHHHHhCCCCccEEEEEcce-----------E----ecCCccccccCCCCC
Q psy4181           2 IEITCNDRLGKKVRVKCN-PDDTIGDLKKLIAAQTGTRWEKIVLKKWYT-----------I----FKDHIRIMDYEIHDG   65 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~-~~~TV~~lK~~I~~~~gip~~~QrLif~Gk-----------~----L~D~~tL~~y~I~~g   65 (73)
                      |+|+||+++|+. .++|+ |++||.+||++|++++|+|+++|||+|.|+           +    ++|..||++|||++|
T Consensus         8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G   86 (107)
T 1wf9_A            8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG   86 (107)
T ss_dssp             EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred             EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence            889999999977 79999 999999999999999999999999999998           4    589999999999999


Q ss_pred             CEEEEEeC
Q psy4181          66 MNLELYYQ   73 (73)
Q Consensus        66 ~ti~L~~~   73 (73)
                      ++|||.|.
T Consensus        87 ~~L~l~~~   94 (107)
T 1wf9_A           87 SMVYLAYE   94 (107)
T ss_dssp             CEEECCCS
T ss_pred             CEEEEEeC
Confidence            99999873

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.88  E-value=7.9e-23  Score=122.86  Aligned_cols=71  Identities=13%  Similarity=0.194  Sum_probs=64.2

Q ss_pred             CEEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc---eE----ecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY---TI----FKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G---k~----L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ||.|+|+...+. .+++++++++||++||++|++++|+||++|||+|.|   +.    ++|+.||++|||++|++|||.
T Consensus         7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~   85 (95)
T 1v6e_A            7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence            578999986553 789999999999999999999999999999999986   54    589999999999999999985

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.88  E-value=4e-23  Score=149.51  Aligned_cols=72  Identities=22%  Similarity=0.260  Sum_probs=68.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHH---HhCCCCccEEEEEcceEecCCccccccCCCCCCEE-EEEe
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAA---QTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNL-ELYY   72 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~---~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti-~L~~   72 (73)
                      +|+|+||+++|++++++|++++||.+||++|++   ++|+|+++|||||+||+|+|+.||++|||++|++| ||+-
T Consensus         7 ~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~   82 (368)
T 1oqy_A            7 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT   82 (368)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred             eEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence            689999999999999999999999999999999   67899999999999999999999999999999999 7764

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.87  E-value=1.4e-21  Score=118.23  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=70.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+.+|+.+.+.|.+++++..|++.++++.|+|+++|||+|.|++|.++.|+++|++++|++||++.+
T Consensus         8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~   79 (94)
T 2io1_B            8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   79 (94)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999753

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.86  E-value=9e-22  Score=123.25  Aligned_cols=71  Identities=14%  Similarity=0.224  Sum_probs=64.2

Q ss_pred             CEEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc---e---E-ecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY---T---I-FKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G---k---~-L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ||.|+|+...+. .++++++|++||++||++|++++||||++|||+|.|   +   + ++|+.||++|||++|++|||.
T Consensus         6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv   84 (122)
T 1t0y_A            6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   84 (122)
T ss_dssp             EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence            478999986553 788999999999999999999999999999999987   4   3 489999999999999999986

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.85  E-value=1.3e-20  Score=108.58  Aligned_cols=70  Identities=14%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+||+.+|+.+.+.|.+++++..|++..+++.|+|++++||+|.|++|.++.|.++|++++|++||+.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999985

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.84  E-value=1.1e-21  Score=115.83  Aligned_cols=70  Identities=20%  Similarity=0.251  Sum_probs=64.0

Q ss_pred             EEEEEEcCCCCEEEEE-eCCCCcHHHHHHHHHHHhCCCCccEEEEEcc--eEec---CCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVK-CNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY--TIFK---DHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~-v~~~~TV~~lK~~I~~~~gip~~~QrLif~G--k~L~---D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+||+++|+.. ++ +++++||.+||++|+++.|+|+++|||+|++  |+|.   |+.||++|||++|++||+..
T Consensus         1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~   76 (86)
T 2kzr_A            1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE   76 (86)
T ss_dssp             CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred             CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence            7899999999655 88 9999999999999999999999999999974  8884   78899999999999999864

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.83  E-value=6.8e-20  Score=110.42  Aligned_cols=71  Identities=14%  Similarity=0.195  Sum_probs=69.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+||+.+|+.+.+.|.+++++..|++.++++.|+|++++||+|.|++|.++.|.++|++++|++|+++.
T Consensus         6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~   76 (91)
T 2io0_B            6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ   76 (91)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999875

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.83  E-value=7.7e-21  Score=135.18  Aligned_cols=70  Identities=21%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE---EcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK---KWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi---f~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|.|.||. +|+++++++++++||++||++|++..|+||++|||+   |+|++|+|+.||++|||++|++|||.
T Consensus         5 ~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~   77 (320)
T 3shq_A            5 EVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV   77 (320)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEE
T ss_pred             eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEE
Confidence            47899996 899999999999999999999999999999999999   99999999999999999999999985

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.82  E-value=1.4e-19  Score=106.15  Aligned_cols=70  Identities=13%  Similarity=0.138  Sum_probs=68.0

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+||+.+|+ .+.+.|.+++++..|++.++++.|+|++++||+|.|++|.++.|.++|++++|++||+.
T Consensus         8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            89999999996 99999999999999999999999999999999999999999999999999999999974

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.81  E-value=2.4e-19  Score=108.06  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=69.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+.+|+.+.+.|.+++++..|++.++++.|+|++++||+|.|++|.++.|.++|++++|++||++.+
T Consensus        18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~   89 (93)
T 2d07_B           18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   89 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence            789999999999999999999999999999999999999999999999999999999999999999999753

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.79  E-value=3.9e-19  Score=109.44  Aligned_cols=71  Identities=14%  Similarity=0.195  Sum_probs=69.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+||+.+|+.+.+.|.+++++..|++.++++.|+|++++||+|.|++|.++.|.++|++++|++||++.
T Consensus        25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~   95 (104)
T 1wz0_A           25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ   95 (104)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999875

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.78  E-value=4.4e-19  Score=110.31  Aligned_cols=71  Identities=7%  Similarity=0.063  Sum_probs=69.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+||+.+|+.+.+.|.+++++..|++.++++.|+|+++|||+|.|++|.++.|.++|++++|++|+++.
T Consensus        27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~   97 (110)
T 2k8h_A           27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMV   97 (110)
T ss_dssp             EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999975

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.77  E-value=2.3e-18  Score=106.51  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=68.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+|++ +|+.+.+.|.+++++..|++.++++.|+|++++||+|.|++|.++.|.++|++++|++|+++.
T Consensus        32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~  101 (106)
T 2eke_C           32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR  101 (106)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred             EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence            7999999 999999999999999999999999999999999999999999999999999999999999875

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.72  E-value=3.4e-17  Score=98.34  Aligned_cols=71  Identities=11%  Similarity=0.099  Sum_probs=63.2

Q ss_pred             CEEEEEEc---CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc------e-Ee-cCCccccccCCCCCCEEE
Q psy4181           1 MIEITCND---RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY------T-IF-KDHIRIMDYEIHDGMNLE   69 (73)
Q Consensus         1 ~~~i~vk~---~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G------k-~L-~D~~tL~~y~I~~g~ti~   69 (73)
                      |+.|+|+.   .+|..+...+.+++||.+||++|+...|+|+..|||.|.+      . .| +|..+|++|||++|++||
T Consensus         9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~   88 (97)
T 1wjn_A            9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL   88 (97)
T ss_dssp             EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred             cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence            57888885   4788999999999999999999999999999999999863      2 25 688899999999999999


Q ss_pred             EE
Q psy4181          70 LY   71 (73)
Q Consensus        70 L~   71 (73)
                      +.
T Consensus        89 V~   90 (97)
T 1wjn_A           89 VR   90 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=99.61  E-value=7.8e-15  Score=91.95  Aligned_cols=71  Identities=11%  Similarity=0.132  Sum_probs=68.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|.|++.+|+.+.+.|.+++++..|++..+++.|+|++++|++|.|++|.++.|.+++++++|++|+++-
T Consensus        41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~  111 (115)
T 3kyd_D           41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ  111 (115)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            78999999999999999999999999999999999999999999999999999999999999999999874

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=99.55  E-value=3.7e-14  Score=95.84  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=67.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|.|+. +|+.+.+.|.+++++..|++..+++.|+|+.++|++|.|++|.++.|.+++++++|++|+++-
T Consensus        30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~   99 (200)
T 3pge_A           30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR   99 (200)
T ss_dssp             EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred             EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence            7899985 999999999999999999999999999999999999999999999999999999999999874

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=99.44  E-value=4e-13  Score=91.02  Aligned_cols=70  Identities=13%  Similarity=0.123  Sum_probs=67.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|.|+. +|+.+.+.|.+++++..|++..+++.|+|+.++|++|.|++|.++.|.++++++||++|+++-
T Consensus        58 InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l  127 (207)
T 3tix_A           58 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR  127 (207)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred             EEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence            7899985 999999999999999999999999999999999999999999999999999999999999863

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=99.31  E-value=5.4e-12  Score=76.62  Aligned_cols=44  Identities=11%  Similarity=-0.096  Sum_probs=41.7

Q ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEec
Q psy4181           9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK   52 (73)
Q Consensus         9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~   52 (73)
                      .+++.+++.+.|++||..+|++|++++||||++|||+|+|++|.
T Consensus        21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~   64 (94)
T 4efo_A           21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV   64 (94)
T ss_dssp             TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred             ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence            37899999999999999999999999999999999999999875

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=99.29  E-value=1.1e-12  Score=77.00  Aligned_cols=70  Identities=17%  Similarity=0.115  Sum_probs=60.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceE-----ecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI-----FKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~-----L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|.|-||+.+| +..+++++++|+.+|+++|++..++|++.|.+.++-.+     +.++.+|+++||+.|++|++.
T Consensus         4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            47788999888 66699999999999999999999999999988766555     347889999999999999874

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=99.28  E-value=3e-13  Score=92.61  Aligned_cols=70  Identities=11%  Similarity=0.089  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|.| +.+|+.+.+.|.++++...|++..+++.|+|++++|++|.|+++.+++|.++++++||++|+++.
T Consensus        22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l   91 (227)
T 3v7o_A           22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR   91 (227)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence            67889 77999999999999999999999999999999999999999999999999999999999999864

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.17  E-value=1.9e-10  Score=77.31  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=66.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |.|.|++ +|+.+.+.|.++++...|++..+++.|+|++++|++|.|+++.+..|-.+.+++++++|++..
T Consensus        22 i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~   91 (209)
T 3uf8_A           22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR   91 (209)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred             EEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence            6789998 899999999999999999999999999999999999999999999999999999999998763

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=99.14  E-value=7.1e-10  Score=65.61  Aligned_cols=70  Identities=16%  Similarity=0.166  Sum_probs=65.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc-cEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE-KIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~-~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.+..++.....+.++|.++.||.+|-+.-+++.|||++ ..||.|.|..|..+.|+++|++.||+.|...
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm   80 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV   80 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence            567788888888999999999999999999999999999 9999999999999999999999999999764

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=99.11  E-value=6.2e-10  Score=67.66  Aligned_cols=70  Identities=13%  Similarity=0.125  Sum_probs=66.2

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.|.|+..+|+ .+.+.|.++.+...|....+++.|++++.-|++|.|..|..+.|-+++++++|++|.+.
T Consensus        26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            67899998995 89999999999999999999999999999999999999999999999999999999864

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=99.04  E-value=2.1e-11  Score=88.29  Aligned_cols=69  Identities=13%  Similarity=0.125  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|.|++ +|+.+.+.|.++++...|++..+++.|++++++|++|.|+.+.++.|.+++++++|++|+++
T Consensus        22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~   90 (360)
T 3ix6_A           22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH   90 (360)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhh
Confidence            6788998 78999999999999999999999999999999999999999999999999999999999875

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=98.93  E-value=2.7e-09  Score=67.79  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc-------------------------------------cEEEEE
Q psy4181           4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE-------------------------------------KIVLKK   46 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~-------------------------------------~QrLif   46 (73)
                      +.|+.++|+..++.|+.+.||.+++..|+.+.||+..                                     +|+|-.
T Consensus        14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~   93 (128)
T 2kc2_A           14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT   93 (128)
T ss_dssp             EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred             EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence            7899999999999999999999999999999999965                                     566633


Q ss_pred             --cceEecCCccccccCCCCCCEEEEEe
Q psy4181          47 --WYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus        47 --~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                        ++.+|.+..||.++||.+++||-|-|
T Consensus        94 dd~~~WLD~srtL~EQGI~e~~tllLRr  121 (128)
T 2kc2_A           94 DDELNWLDHGRTLREQGVEEHETLLLRR  121 (128)
T ss_dssp             SSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred             cCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence              35899999999999999999998865

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=98.89  E-value=1.8e-10  Score=82.48  Aligned_cols=69  Identities=13%  Similarity=0.123  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.|.|++ +|..+.+.|.++++...|++..+++.|+|+.++|++|.|++|.+..|-+++++++|++|++.
T Consensus        31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~   99 (389)
T 4da1_A           31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAH   99 (389)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeee
Confidence            5688888 88999999999999999999999999999999999999999999999999999999999875

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=98.72  E-value=1.5e-07  Score=57.17  Aligned_cols=69  Identities=10%  Similarity=0.033  Sum_probs=65.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.|.|+. .|..+.+.+..+.--..|....+++.|+++.+-|++|.|..+.++.|-++.++++|++|..+
T Consensus        22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~   90 (95)
T 2l76_A           22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCV   90 (95)
T ss_dssp             EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEE
T ss_pred             EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEE
Confidence            6788996 79999999999999999999999999999999999999999999999999999999999764

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=98.59  E-value=3.8e-07  Score=54.82  Aligned_cols=71  Identities=13%  Similarity=0.084  Sum_probs=66.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |.|.|-..+|+..++.|.|+.|+.++=++-.+++|+++++-.|.|++++|+=...+.-.||.+|+.+.|+-
T Consensus        10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~   80 (90)
T 2al3_A           10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   80 (90)
T ss_dssp             CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence            46888899999999999999999999999999999999999999999999888899999999999999873

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=98.43  E-value=1.5e-06  Score=51.14  Aligned_cols=69  Identities=16%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             EEEEEEc--CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC-----ccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181           2 IEITCND--RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW-----EKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~--~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~-----~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      |.|.+..  -.|+.+.+.++..-||++|++-+.+..+++.     -+-|..-.|..|.+.++|++|+|.+|+.|.+
T Consensus         5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            4566653  5899999999999999999999999999886     2446666888999999999999999999875

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=98.31  E-value=5.9e-06  Score=47.93  Aligned_cols=69  Identities=10%  Similarity=0.124  Sum_probs=59.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE--EcceEec---CCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK--KWYTIFK---DHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi--f~Gk~L~---D~~tL~~y~I~~g~ti~L~   71 (73)
                      ..|-||.++|+.+.-...+++||.+|.+-|.. .|.++....|.  |-.|.|.   .+.||++.|+.+..+|.+.
T Consensus         8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A            8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            46789999999998999999999999999988 67888889998  4467784   4679999999999999875

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=97.96  E-value=2.5e-05  Score=48.42  Aligned_cols=62  Identities=31%  Similarity=0.341  Sum_probs=45.7

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHh--CCCCc------cEEEEE----cceEecCCc-------------cccccCCCC
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQT--GTRWE------KIVLKK----WYTIFKDHI-------------RIMDYEIHD   64 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~--gip~~------~QrLif----~Gk~L~D~~-------------tL~~y~I~~   64 (73)
                      .+..+++.|-.-|||.++|+||-+..  |.|..      ...|=+    +|+.|.|.+             ||++|+|.|
T Consensus        22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  101 (111)
T 4e71_A           22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD  101 (111)
T ss_dssp             CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred             CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence            45678899999999999999999873  77654      445544    356777633             899999999


Q ss_pred             CCEEEEE
Q psy4181          65 GMNLELY   71 (73)
Q Consensus        65 g~ti~L~   71 (73)
                      |+||-|+
T Consensus       102 gatl~l~  108 (111)
T 4e71_A          102 GATLILS  108 (111)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEE
Confidence            9999886

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=97.94  E-value=0.00021  Score=45.24  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=49.4

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHh--CCCC------ccEEEEE-c---ce-EecCC-------------ccccccCCC
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQT--GTRW------EKIVLKK-W---YT-IFKDH-------------IRIMDYEIH   63 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~--gip~------~~QrLif-~---Gk-~L~D~-------------~tL~~y~I~   63 (73)
                      .+..+++.|-.-|||.++|+||-+..  |.|.      ++..|=+ .   |+ .|.|.             -||++|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            56679999999999999999999873  6665      5677755 3   33 36652             389999999


Q ss_pred             CCCEEEEEe
Q psy4181          64 DGMNLELYY   72 (73)
Q Consensus        64 ~g~ti~L~~   72 (73)
                      ||+||-|+.
T Consensus        95 dgatv~l~~  103 (127)
T 3h6n_A           95 EGASLAMSL  103 (127)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999999864

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=97.88  E-value=0.00016  Score=43.98  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=61.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE--cceEec--C-CccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK--WYTIFK--D-HIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif--~Gk~L~--D-~~tL~~y~I~~g~ti~L~~   72 (73)
                      ..|-||.++|+.+.-...+++||.+|.+-|....+.+...-.|+-  --|.|.  | ..||++.|+.+..+|++..
T Consensus        14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~   89 (109)
T 2dzk_A           14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP   89 (109)
T ss_dssp             EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence            468899999999999999999999999999999888877778864  566776  3 6799999999999998763

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=97.84  E-value=7.5e-05  Score=47.85  Aligned_cols=60  Identities=25%  Similarity=0.294  Sum_probs=46.8

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHh--CCCCcc------EEEEE----cce-EecCCc-------------cccccCCCCC
Q psy4181          12 KKVRVKCNPDDTIGDLKKLIAAQT--GTRWEK------IVLKK----WYT-IFKDHI-------------RIMDYEIHDG   65 (73)
Q Consensus        12 ~~~~v~v~~~~TV~~lK~~I~~~~--gip~~~------QrLif----~Gk-~L~D~~-------------tL~~y~I~~g   65 (73)
                      ..+++.|-.-|||.++|+||-+..  |+|..+      --|=+    +|+ .|.|.+             ||+.|+|.||
T Consensus        41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg  120 (138)
T 2r2o_A           41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  120 (138)
T ss_dssp             CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred             CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence            578999999999999999999985  776643      33422    344 476642             8999999999


Q ss_pred             CEEEEE
Q psy4181          66 MNLELY   71 (73)
Q Consensus        66 ~ti~L~   71 (73)
                      .+|-|+
T Consensus       121 a~l~l~  126 (138)
T 2r2o_A          121 ATVALV  126 (138)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            999886

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=97.77  E-value=0.00011  Score=49.16  Aligned_cols=61  Identities=20%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHhCCCCc-cEEEE--E-c--ceEecC-CccccccCCCCCCEEEEEeC
Q psy4181          13 KVRVKCNPDDTIGDLKKLIAAQTGTRWE-KIVLK--K-W--YTIFKD-HIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus        13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~-~QrLi--f-~--Gk~L~D-~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ..++.++..+||.+|++++....++|++ .-||-  + .  ...|.| +.||++++|.+|..|-+++|
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r  208 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK  208 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence            4567889999999999999999999998 68883  3 2  235666 56999999999999998875

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=97.76  E-value=0.00019  Score=44.62  Aligned_cols=69  Identities=13%  Similarity=0.081  Sum_probs=59.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE--EcceEe--cC-CccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK--KWYTIF--KD-HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi--f~Gk~L--~D-~~tL~~y~I~~g~ti~L~   71 (73)
                      ..|-||.++|+.+.-.+.+++||.+|.+-|... |.++..-.|+  |-.|.|  .| ..||++.|+.+..+|++.
T Consensus        44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A           44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence            468899999999999999999999999999887 8888888887  457888  44 789999999998888775

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=97.72  E-value=0.00021  Score=48.27  Aligned_cols=61  Identities=20%  Similarity=0.186  Sum_probs=51.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHhCCCCc-cEEEEE-c----ceEecC-CccccccCCCCCCEEEEEeC
Q psy4181          13 KVRVKCNPDDTIGDLKKLIAAQTGTRWE-KIVLKK-W----YTIFKD-HIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus        13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~-~QrLif-~----Gk~L~D-~~tL~~y~I~~g~ti~L~~~   73 (73)
                      .+++.++..+||.+|++.+....++|++ .-||-. .    ...|.| +.||+++++.+|..|-++.|
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r  220 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ  220 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence            3556779999999999999999999998 688844 3    346776 58999999999999988865

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=97.63  E-value=0.00044  Score=48.78  Aligned_cols=61  Identities=11%  Similarity=0.060  Sum_probs=52.8

Q ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHhC----CCCccEEEEE------cceEecCCccccccCCCCCCEEEEE
Q psy4181          11 GKKVRVKCNPDDTIGDLKKLIAAQTG----TRWEKIVLKK------WYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        11 G~~~~v~v~~~~TV~~lK~~I~~~~g----ip~~~QrLif------~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +.+.++.++|+.||.++-.+|.|+..    .+++.--|.-      .|+.|++.+||+.|++++|+.++..
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~   82 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR   82 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence            77888999999999999999988863    4688878866      5788999999999999999998753

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=97.43  E-value=0.0011  Score=41.22  Aligned_cols=61  Identities=25%  Similarity=0.269  Sum_probs=46.5

Q ss_pred             CCEEEEEeCCCCcHHHHHHHHHHH--hCCCCc------cEEEEE-cc---e-EecCC-------------ccccccCCCC
Q psy4181          11 GKKVRVKCNPDDTIGDLKKLIAAQ--TGTRWE------KIVLKK-WY---T-IFKDH-------------IRIMDYEIHD   64 (73)
Q Consensus        11 G~~~~v~v~~~~TV~~lK~~I~~~--~gip~~------~QrLif-~G---k-~L~D~-------------~tL~~y~I~~   64 (73)
                      ...+++.|-.-|||.++|+||-+.  .|.|..      +..|=+ .|   + .|.|.             -||++|+|.|
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            445888999999999999999987  377754      556644 33   3 36552             3799999999


Q ss_pred             CCEEEEE
Q psy4181          65 GMNLELY   71 (73)
Q Consensus        65 g~ti~L~   71 (73)
                      |+++-|+
T Consensus       106 gatl~l~  112 (117)
T 4e74_A          106 GSVVALV  112 (117)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEE
Confidence            9999886

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.42  E-value=0.0012  Score=39.89  Aligned_cols=70  Identities=11%  Similarity=-0.026  Sum_probs=58.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE--EcceEec--CCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK--KWYTIFK--DHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi--f~Gk~L~--D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ..|-||.++|+.+.-...+++||.+|.+-|... +..+..-+|+  |-.|.|.  ...||++.|+.+..+|.+.-
T Consensus        24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            478899999999999999999999999999865 5566677776  4467786  37899999999999998763

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=97.28  E-value=0.0031  Score=39.79  Aligned_cols=60  Identities=27%  Similarity=0.386  Sum_probs=44.0

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHH----hCCCCc----cEEEEE----cceEecCC--------------ccccccCCCCC
Q psy4181          12 KKVRVKCNPDDTIGDLKKLIAAQ----TGTRWE----KIVLKK----WYTIFKDH--------------IRIMDYEIHDG   65 (73)
Q Consensus        12 ~~~~v~v~~~~TV~~lK~~I~~~----~gip~~----~QrLif----~Gk~L~D~--------------~tL~~y~I~~g   65 (73)
                      ..+++.|-.-|||.++|+||-+.    .|.|..    ...|=+    +|++|.|.              -||+.|+|.||
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            57899999999999999999876    377653    344433    22344431              26788999999


Q ss_pred             CEEEEE
Q psy4181          66 MNLELY   71 (73)
Q Consensus        66 ~ti~L~   71 (73)
                      ++|-|+
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            999875

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=97.27  E-value=0.0012  Score=41.10  Aligned_cols=67  Identities=15%  Similarity=0.171  Sum_probs=55.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCCCccEEEEE--cceEecC-CccccccCCCCCCEEE
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ-TGTRWEKIVLKK--WYTIFKD-HIRIMDYEIHDGMNLE   69 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~-~gip~~~QrLif--~Gk~L~D-~~tL~~y~I~~g~ti~   69 (73)
                      .|-||.++|+.+.-.+.+++||.+|.+-|... .+.+.....|+.  -.|.|.| +.||++.|+.+..+|+
T Consensus        54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~  124 (127)
T 1s3s_G           54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ  124 (127)
T ss_dssp             CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence            57789999999999999999999999999886 345566777764  5788876 6899999999865553

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=97.06  E-value=0.011  Score=32.89  Aligned_cols=61  Identities=26%  Similarity=0.235  Sum_probs=46.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|+|+|+-..+ ...+++....||.+|.+.+    |++++.-....+|+.+..+.     -+++|+.|.++
T Consensus         4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii   64 (70)
T 1ryj_A            4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVI   64 (70)
T ss_dssp             CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred             eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence            47888875332 3456777888999998875    77888777788999986554     57999999875

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=97.04  E-value=0.0046  Score=47.64  Aligned_cols=60  Identities=25%  Similarity=0.294  Sum_probs=46.7

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHH--hCCCCc------cEEEEE----cce-EecCCc-------------cccccCCCCC
Q psy4181          12 KKVRVKCNPDDTIGDLKKLIAAQ--TGTRWE------KIVLKK----WYT-IFKDHI-------------RIMDYEIHDG   65 (73)
Q Consensus        12 ~~~~v~v~~~~TV~~lK~~I~~~--~gip~~------~QrLif----~Gk-~L~D~~-------------tL~~y~I~~g   65 (73)
                      ..+++.|-.-|||.++|+||-+.  .|.|..      +..|=+    .|+ .|.|.+             ||++|+|.||
T Consensus       274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  353 (644)
T 3hm6_X          274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  353 (644)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred             CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence            45888999999999999999977  477764      444533    233 477754             8999999999


Q ss_pred             CEEEEE
Q psy4181          66 MNLELY   71 (73)
Q Consensus        66 ~ti~L~   71 (73)
                      +||-|+
T Consensus       354 a~v~L~  359 (644)
T 3hm6_X          354 ATVALV  359 (644)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            999875

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=96.87  E-value=0.0035  Score=35.67  Aligned_cols=60  Identities=10%  Similarity=0.021  Sum_probs=45.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|.||-.......+++++..||++|=++    .|+|++.-...-+|+.+..+.      +.+|++|.+.
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv   60 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL   60 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence            67888876556666899999999987654    899999987677999885444      2458887653

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=96.81  E-value=0.017  Score=44.37  Aligned_cols=69  Identities=23%  Similarity=0.318  Sum_probs=49.6

Q ss_pred             EEEEEcCC---CCEEEEEeCCCCcHHHHHHHHHHHh--CCCC------ccEEEEE-c---ce-EecCC------------
Q psy4181           3 EITCNDRL---GKKVRVKCNPDDTIGDLKKLIAAQT--GTRW------EKIVLKK-W---YT-IFKDH------------   54 (73)
Q Consensus         3 ~i~vk~~~---G~~~~v~v~~~~TV~~lK~~I~~~~--gip~------~~QrLif-~---Gk-~L~D~------------   54 (73)
                      .++|-...   ...+++.|-.-|||.++|+||-+..  |.|.      ++..|=+ .   |+ .|.|.            
T Consensus       235 tL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkr  314 (627)
T 3ig3_A          235 TLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKR  314 (627)
T ss_dssp             EEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEE
T ss_pred             EEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeE
Confidence            45554333   3678899999999999999999884  6664      4555543 2   33 45552            


Q ss_pred             -ccccccCCCCCCEEEEE
Q psy4181          55 -IRIMDYEIHDGMNLELY   71 (73)
Q Consensus        55 -~tL~~y~I~~g~ti~L~   71 (73)
                       -||++|+|.||.+|-|+
T Consensus       315 LNTL~HY~V~Dga~v~L~  332 (627)
T 3ig3_A          315 VNSLAHYQVTDGSLVALV  332 (627)
T ss_dssp             CCBTTTTTCCTTCEEEEE
T ss_pred             ecchhhcCCCCCceEEEE
Confidence             37999999999999875

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=96.61  E-value=0.0028  Score=39.68  Aligned_cols=34  Identities=12%  Similarity=0.154  Sum_probs=30.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE
Q psy4181          13 KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK   46 (73)
Q Consensus        13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif   46 (73)
                      ..++.|.-+.|+.+||++|++..|+|+++|||-.
T Consensus        57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~   90 (130)
T 2kvr_A           57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP   90 (130)
T ss_dssp             CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred             cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence            4568889999999999999999999999999954

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=96.53  E-value=0.013  Score=34.40  Aligned_cols=61  Identities=23%  Similarity=0.218  Sum_probs=43.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCC-CcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPD-DTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~-~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ||+|+|   +|+..  ++++. .||.+|.+.+    |++++.-..-.+|+.+.. ...++.-+++|+.|.++
T Consensus        20 ~M~I~v---NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~   81 (87)
T 1tyg_B           20 RHMLQL---NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIV   81 (87)
T ss_dssp             --CEEE---TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEE
T ss_pred             ceEEEE---CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEE
Confidence            466776   57654  45666 8999998875    777777777789988752 23445679999999876

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=95.98  E-value=0.057  Score=31.60  Aligned_cols=68  Identities=18%  Similarity=0.166  Sum_probs=42.3

Q ss_pred             CEEEEEEcC------C-C-CEEEEEeC--CCCcHHHHHHHHHHHhCCC-Ccc------E-----E-EEEcceEecCCccc
Q psy4181           1 MIEITCNDR------L-G-KKVRVKCN--PDDTIGDLKKLIAAQTGTR-WEK------I-----V-LKKWYTIFKDHIRI   57 (73)
Q Consensus         1 ~~~i~vk~~------~-G-~~~~v~v~--~~~TV~~lK~~I~~~~gip-~~~------Q-----r-Lif~Gk~L~D~~tL   57 (73)
                      ||+|.||..      . | +..++++.  +..||++|.+.+.++..-. ++-      .     . ..-+|+..+   -+
T Consensus         1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~   77 (99)
T 2qjl_A            1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LE   77 (99)
T ss_dssp             CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GG
T ss_pred             CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---cc
Confidence            788888754      4 3 56667776  6789999999999886321 111      1     1 122443221   12


Q ss_pred             --cccCCCCCCEEEEE
Q psy4181          58 --MDYEIHDGMNLELY   71 (73)
Q Consensus        58 --~~y~I~~g~ti~L~   71 (73)
                        .++-+++|+.|.+.
T Consensus        78 ~~~d~~L~dgDeVa~~   93 (99)
T 2qjl_A           78 GEKDYILEDGDIISFT   93 (99)
T ss_dssp             TGGGCBCCTTCEEEEE
T ss_pred             CCCCcCcCCCCEEEEE
Confidence              35679999998764

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=95.67  E-value=0.12  Score=35.28  Aligned_cols=71  Identities=14%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEE--cce--EecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKK--WYT--IFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif--~Gk--~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +.+.|..++| ++.+.|+++.|+.+|=++|+++.|+.-.+ --|.|  .|.  .|+...+|.+.+++.+....|.|+
T Consensus        23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr   98 (314)
T 1h4r_A           23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL   98 (314)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred             eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence            5677888898 88899999999999999999999998532 24444  332  477788888887777777777664

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=95.58  E-value=0.061  Score=31.44  Aligned_cols=44  Identities=14%  Similarity=0.196  Sum_probs=37.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY   48 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G   48 (73)
                      .|.|-.-  -++.+.|.+..+..+|.++|+++.++|++.-.|-|.-
T Consensus         7 ~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            7 TLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             EEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             EEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            4444442  6999999999999999999999999999999998854

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=95.56  E-value=0.1  Score=35.21  Aligned_cols=71  Identities=14%  Similarity=0.115  Sum_probs=54.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEE---cc--eEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKK---WY--TIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif---~G--k~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |.+.|..++| +..+.|+++.|+.+|=++|+++.|+.... --|.|   +|  ..|+...++.+.+++.+....|.||
T Consensus         2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr   78 (294)
T 1ef1_A            2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR   78 (294)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred             EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence            6788888888 78899999999999999999999997643 13433   23  2466677888777777777777664

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=95.54  E-value=0.07  Score=36.95  Aligned_cols=45  Identities=11%  Similarity=-0.071  Sum_probs=38.3

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc-eEecCC
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY-TIFKDH   54 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G-k~L~D~   54 (73)
                      .-....+.+.+..|+.++++++++..|++++.|.|+|.+ ...-|.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~  365 (396)
T 4eut_A          320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEP  365 (396)
T ss_dssp             TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCS
T ss_pred             cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCC
Confidence            556677889999999999999999999999999999988 343343

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=95.43  E-value=0.064  Score=29.13  Aligned_cols=60  Identities=17%  Similarity=0.254  Sum_probs=42.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|+|   +|+..  ++.+..||.+|.+.+    +++++.-....+|+.... ....+.-+++|+.|.++
T Consensus         1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~   60 (66)
T 1f0z_A            1 MQILF---NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLF   60 (66)
T ss_dssp             CCEEE---SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEE
T ss_pred             CEEEE---CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEE
Confidence            35555   67765  456778999998876    677777777779988752 22334568999998775

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=95.38  E-value=0.091  Score=29.09  Aligned_cols=64  Identities=8%  Similarity=0.077  Sum_probs=41.0

Q ss_pred             EEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCC--ccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           3 EITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRW--EKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         3 ~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~--~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      .|.||....- .-++++ +..||.+|.+.+..+.+...  ..-+..-+|+...+.    +.-+++|+.|.+.
T Consensus         2 ~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~----~~~l~~gDeV~i~   68 (74)
T 3rpf_C            2 MVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL----NTPLKDGDVISLL   68 (74)
T ss_dssp             EEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT----TCCCCTTCEEEEE
T ss_pred             EEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC----CcCCCCCCEEEEE
Confidence            4666655321 134666 56799999999987644332  334445588775443    4569999999875

>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C

Probab=95.13  E-value=0.24  Score=29.03  Aligned_cols=60  Identities=17%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHh-CCC----Cc-cEEEEEcc--eEecCCccccccCCCCCCEEEEEe
Q psy4181          13 KVRVKCNPDDTIGDLKKLIAAQT-GTR----WE-KIVLKKWY--TIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus        13 ~~~v~v~~~~TV~~lK~~I~~~~-gip----~~-~QrLif~G--k~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ..-+.|+..+|+.++-++++... |.-    |. --|..+.|  +.|..+.|+++.||++-.+|...|
T Consensus        14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~   81 (83)
T 2inc_C           14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF   81 (83)
T ss_dssp             EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred             EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence            34578999999999999999873 432    23 45778888  999999999999999999999987

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=95.05  E-value=0.019  Score=44.05  Aligned_cols=52  Identities=15%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-cceEecCCcccccc
Q psy4181           9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-WYTIFKDHIRIMDY   60 (73)
Q Consensus         9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-~Gk~L~D~~tL~~y   60 (73)
                      .+++...+.+.++.|+.+++..|++..|||++.|.|++ .|-++.......+|
T Consensus       319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~  371 (676)
T 3qa8_A          319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY  371 (676)
T ss_dssp             SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred             cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence            36677789999999999999999999999999999999 55556656566654

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.02  E-value=0.05  Score=32.37  Aligned_cols=63  Identities=14%  Similarity=0.183  Sum_probs=54.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE---cceEecCCccccccCCCC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK---WYTIFKDHIRIMDYEIHD   64 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif---~Gk~L~D~~tL~~y~I~~   64 (73)
                      +.+-|+.+...+.-+.|+|..+..++--.|.++-..+|+.-.|.-   ++..|+=..+|.+|||++
T Consensus        11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A           11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            355677766677778999999999999999999999999999976   566788899999999997

>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*

Probab=94.95  E-value=0.15  Score=29.99  Aligned_cols=61  Identities=11%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHh-CCC----CccEEEEEcceE--ecCCccccccCCCCCCEEEEEeC
Q psy4181          13 KVRVKCNPDDTIGDLKKLIAAQT-GTR----WEKIVLKKWYTI--FKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus        13 ~~~v~v~~~~TV~~lK~~I~~~~-gip----~~~QrLif~Gk~--L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ..-+.|+..+|+.++-++++... |.-    |.--|..++|+.  |.++.|+++.||++-++|...|.
T Consensus        16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~~   83 (84)
T 3ge3_C           16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVFE   83 (84)
T ss_dssp             EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEEC
T ss_pred             EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEEc
Confidence            34578999999999999999873 543    345688899998  99999999999999999999883

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=94.92  E-value=0.27  Score=28.51  Aligned_cols=65  Identities=12%  Similarity=0.138  Sum_probs=44.9

Q ss_pred             EEEEEEcC------CC-CEEEEEeCCCCcHHHHHHHHHHHhC-----------CCCccEEEEEcceEecCCccccccCCC
Q psy4181           2 IEITCNDR------LG-KKVRVKCNPDDTIGDLKKLIAAQTG-----------TRWEKIVLKKWYTIFKDHIRIMDYEIH   63 (73)
Q Consensus         2 ~~i~vk~~------~G-~~~~v~v~~~~TV~~lK~~I~~~~g-----------ip~~~QrLif~Gk~L~D~~tL~~y~I~   63 (73)
                      |+|.||..      .| ....+++.+..||.+|.+.+..+..           -....-.+.-+|+....     ++-++
T Consensus        10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~   84 (98)
T 1vjk_A           10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK   84 (98)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred             EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence            55666654      45 4778888888999999999988741           11233445558877652     56789


Q ss_pred             CCCEEEEE
Q psy4181          64 DGMNLELY   71 (73)
Q Consensus        64 ~g~ti~L~   71 (73)
                      +|+.|.++
T Consensus        85 dGDeV~i~   92 (98)
T 1vjk_A           85 DGDVVGVF   92 (98)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEE
Confidence            99999774

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=94.92  E-value=0.031  Score=41.70  Aligned_cols=33  Identities=12%  Similarity=0.165  Sum_probs=30.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE
Q psy4181          13 KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK   45 (73)
Q Consensus        13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi   45 (73)
                      ..++.|..+.|+.+||+++++..|+|+++|||-
T Consensus        37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW   69 (530)
T 2ylm_A           37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW   69 (530)
T ss_dssp             CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred             cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence            346888999999999999999999999999994

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=94.91  E-value=0.044  Score=31.26  Aligned_cols=62  Identities=15%  Similarity=0.147  Sum_probs=43.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC-CccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR-WEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip-~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |+|.|   +|+...++..+..||.+|-+.    .|++ ++.--.-.+|..+. ....+++-+++|+.|.++
T Consensus         1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVp-r~~~~~~~L~dGD~IEIv   63 (78)
T 2k5p_A            1 MNLTV---NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLE-REAFDATTVKDGDAVEFL   63 (78)
T ss_dssp             CEEEE---TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECC-TTHHHHCEECSSBCEEEC
T ss_pred             CEEEE---CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEE
Confidence            46666   577554422166899998765    5888 77777788998874 334455678999998875

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=94.80  E-value=0.14  Score=30.36  Aligned_cols=59  Identities=15%  Similarity=0.186  Sum_probs=51.1

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181          14 VRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus        14 ~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      +.-.++-+.++..||+-++.+.|++.+.--..-.+.+|+++.+|-+-+++-.-.|++.-
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinv   63 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSV   63 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEE
Confidence            33456677889999999999999999998887788999999999999999888888753

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=94.74  E-value=0.27  Score=36.98  Aligned_cols=71  Identities=13%  Similarity=0.091  Sum_probs=54.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc-cEEEEEc---c--eEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE-KIVLKKW---Y--TIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~-~QrLif~---G--k~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |.+.|-.++| ++.+.|+++.|+.+|=..|+.+.|++-. ---|.|.   |  .+|+...++.+.+++.+....|.|+
T Consensus         5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR   81 (575)
T 2i1j_A            5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR   81 (575)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred             EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence            5678888888 7889999999999999999999999743 2344442   2  3566677888877777777777764

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=94.68  E-value=0.3  Score=27.85  Aligned_cols=60  Identities=15%  Similarity=0.113  Sum_probs=37.9

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhC-C-----C-------CccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTG-T-----R-------WEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~g-i-----p-------~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      .|+...++. +..||.+|.+.+.++.. .     .       ...-++.-+|+...+..- .++-+++|+.|.++
T Consensus        15 ~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~   87 (93)
T 3dwg_C           15 TGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTIL   87 (93)
T ss_dssp             TTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred             hCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEE
Confidence            554445665 45799999999998752 0     0       012344558877654222 24568999999875

>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=94.63  E-value=0.08  Score=31.90  Aligned_cols=52  Identities=10%  Similarity=0.053  Sum_probs=41.5

Q ss_pred             cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-------cceEecCCccccc
Q psy4181           8 DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-------WYTIFKDHIRIMD   59 (73)
Q Consensus         8 ~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-------~Gk~L~D~~tL~~   59 (73)
                      ..+|...++.|++++|+.++=+.+.++.+...+.--=++       .-|.++|++.|-+
T Consensus        16 ~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vve   74 (100)
T 1wgr_A           16 SEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVE   74 (100)
T ss_dssp             ETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHH
T ss_pred             ecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHH
Confidence            368999999999999999999999999988855442223       5577899886654

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=94.40  E-value=0.38  Score=29.12  Aligned_cols=68  Identities=16%  Similarity=0.127  Sum_probs=42.0

Q ss_pred             EEEEEEcC------CC--CEEEEEeCC---CCcHHHHHHHHHHHhCCCCccEEEEE-cce------EecCCc---cc--c
Q psy4181           2 IEITCNDR------LG--KKVRVKCNP---DDTIGDLKKLIAAQTGTRWEKIVLKK-WYT------IFKDHI---RI--M   58 (73)
Q Consensus         2 ~~i~vk~~------~G--~~~~v~v~~---~~TV~~lK~~I~~~~gip~~~QrLif-~Gk------~L~D~~---tL--~   58 (73)
                      |+|.|+.+      +|  +.+.++++.   ..||++|-+.+.++.  |....+|+. +|+      .|-|++   -|  .
T Consensus        12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl   89 (114)
T 1wgk_A           12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL   89 (114)
T ss_dssp             EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred             cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence            88888866      45  366688773   369999999998876  222222221 121      222222   33  3


Q ss_pred             ccCCCCCCEEEEE
Q psy4181          59 DYEIHDGMNLELY   71 (73)
Q Consensus        59 ~y~I~~g~ti~L~   71 (73)
                      +|-+++|+.|.+.
T Consensus        90 dt~L~dGDeV~ii  102 (114)
T 1wgk_A           90 DYQLQDQDSILFI  102 (114)
T ss_dssp             TCBCCSSEEEEEE
T ss_pred             CcCCCCCCEEEEe
Confidence            5789999998763

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=94.19  E-value=0.38  Score=27.11  Aligned_cols=57  Identities=21%  Similarity=0.284  Sum_probs=40.5

Q ss_pred             CC-CEEEEEeCCCCcHHHHHHHHHHHhC-CC----------CccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          10 LG-KKVRVKCNPDDTIGDLKKLIAAQTG-TR----------WEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        10 ~G-~~~~v~v~~~~TV~~lK~~I~~~~g-ip----------~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      .| +...+++....||.+|.+.+.++.. +.          ...-++.-+|+....     ++-+++|+.|.++
T Consensus        15 ~g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~   83 (89)
T 3po0_A           15 AGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF   83 (89)
T ss_dssp             HTCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred             hCCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence            45 6778888888899999999988752 10          011345558887764     4568999999875

>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}

Probab=93.95  E-value=0.42  Score=28.97  Aligned_cols=69  Identities=14%  Similarity=0.184  Sum_probs=52.8

Q ss_pred             EEEEEEcCCC---CEEEEEeCCCCcHHHHHHHHHHHhCCCCc--cEEEEEcc---eEecCCccccccCCCCCCEEEE
Q psy4181           2 IEITCNDRLG---KKVRVKCNPDDTIGDLKKLIAAQTGTRWE--KIVLKKWY---TIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~~~G---~~~~v~v~~~~TV~~lK~~I~~~~gip~~--~QrLif~G---k~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      ..|+|.+.+.   ...++.|..+.-|+-|-.++-|+.+++-+  .--|-.--   -.|+-..||..|||+....++.
T Consensus        20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~f   96 (102)
T 2kmc_A           20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLF   96 (102)
T ss_dssp             EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEE
T ss_pred             EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeec
Confidence            4689999764   67888999889999999999998877643  33333321   1357789999999999998875

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=93.26  E-value=0.7  Score=27.10  Aligned_cols=43  Identities=12%  Similarity=0.067  Sum_probs=35.1

Q ss_pred             EEEcC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEEc
Q psy4181           5 TCNDR-LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKKW   47 (73)
Q Consensus         5 ~vk~~-~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif~   47 (73)
                      .||.. .|....+.++++.+-.+|.+++.++.+++.++ -.+.|-
T Consensus         8 kvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~   52 (89)
T 1vd2_A            8 RVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI   52 (89)
T ss_dssp             EEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred             EEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence            34433 68999999999999999999999999998776 455553

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=93.01  E-value=0.36  Score=26.60  Aligned_cols=56  Identities=21%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             CC-CEEEEEeCCCCcHHHHHHHHHHHhC-----CCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          10 LG-KKVRVKCNPDDTIGDLKKLIAAQTG-----TRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        10 ~G-~~~~v~v~~~~TV~~lK~~I~~~~g-----ip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      .| ....++ .+..||.+|.+.+..+..     ++...-....+|+....     +.-+++|+.|.++
T Consensus        14 ~g~~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~   75 (81)
T 1fm0_D           14 VGTDATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF   75 (81)
T ss_dssp             HTCSEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred             hCCCeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence            45 355566 567899999999876531     22233456668887742     4568999999875

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=92.82  E-value=0.27  Score=33.66  Aligned_cols=60  Identities=13%  Similarity=-0.016  Sum_probs=46.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEEc---c--eEecCCccccccC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKKW---Y--TIFKDHIRIMDYE   61 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif~---G--k~L~D~~tL~~y~   61 (73)
                      +.+.|..++|...++.|+++.|+.+|=++|+++.|+.-.. --|.|.   |  ..|+...++.+..
T Consensus        18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~   83 (296)
T 3qij_A           18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV   83 (296)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred             EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhc
Confidence            5788999999999999999999999999999999998533 344442   2  3466666666553

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=92.62  E-value=0.42  Score=26.11  Aligned_cols=54  Identities=7%  Similarity=0.013  Sum_probs=38.3

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHhCCCCccE--EEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          12 KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKI--VLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        12 ~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Q--rLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +...+++.+..||.+|.+.+..+.. .+..-  .+.-+|+....+     .-+++|+.|.++
T Consensus        16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~   71 (77)
T 2q5w_D           16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALI   71 (77)
T ss_dssp             SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence            3567777778899999999887741 11223  566688887643     468999998775

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=92.38  E-value=0.12  Score=38.44  Aligned_cols=68  Identities=10%  Similarity=0.064  Sum_probs=53.4

Q ss_pred             EEEEEEcC--CCCEEE----EEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc------ceEec-CCcccccc--CCCCCC
Q psy4181           2 IEITCNDR--LGKKVR----VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW------YTIFK-DHIRIMDY--EIHDGM   66 (73)
Q Consensus         2 ~~i~vk~~--~G~~~~----v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~------Gk~L~-D~~tL~~y--~I~~g~   66 (73)
                      +-||+|--  ..+++.    +-|+.+++|.++-..|.++.|+|++.--.+|.      ..+|+ -..|+++.  .|++|+
T Consensus       131 iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~Gd  210 (530)
T 2ylm_A          131 VMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGD  210 (530)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTE
T ss_pred             EEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCC
Confidence            44677754  233433    56789999999999999999999998877785      34577 58899999  999999


Q ss_pred             EEE
Q psy4181          67 NLE   69 (73)
Q Consensus        67 ti~   69 (73)
                      .|-
T Consensus       211 II~  213 (530)
T 2ylm_A          211 IIV  213 (530)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}

Probab=92.35  E-value=0.42  Score=27.85  Aligned_cols=67  Identities=9%  Similarity=0.105  Sum_probs=41.7

Q ss_pred             CEEEEEEcC------CCC-EEEEEeCCCCcHHHHHHHHHHHh-CCCCc---------cE-------EEEEcceEecCCcc
Q psy4181           1 MIEITCNDR------LGK-KVRVKCNPDDTIGDLKKLIAAQT-GTRWE---------KI-------VLKKWYTIFKDHIR   56 (73)
Q Consensus         1 ~~~i~vk~~------~G~-~~~v~v~~~~TV~~lK~~I~~~~-gip~~---------~Q-------rLif~Gk~L~D~~t   56 (73)
                      ||+|.|+..      .|+ ...++   ..||.+|.+.+..+. +....         ..       ....+|+...... 
T Consensus         3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-   78 (99)
T 2l52_A            3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-   78 (99)
T ss_dssp             CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred             ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence            788888865      343 44444   589999999998874 11110         12       4555776553211 


Q ss_pred             ccccCCCCCCEEEEE
Q psy4181          57 IMDYEIHDGMNLELY   71 (73)
Q Consensus        57 L~~y~I~~g~ti~L~   71 (73)
                      =.++-+++|+.|.++
T Consensus        79 ~~~~~L~~gD~V~i~   93 (99)
T 2l52_A           79 GLETLLKDSDEIGIL   93 (99)
T ss_dssp             STTSCCCTTEEEEEE
T ss_pred             CCCCCCCCCCEEEEE
Confidence            124568999999875

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=92.22  E-value=1.3  Score=30.80  Aligned_cols=69  Identities=13%  Similarity=0.108  Sum_probs=50.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEEcc---------eEecCCccccccCCCCCCEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKKWY---------TIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif~G---------k~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      +.+.|..++|....+.|+++.|+.++=++|+++.|+.... --|.+..         +.|+-..++.+-+..+..++++
T Consensus        86 ~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f  164 (371)
T 3ivf_A           86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL  164 (371)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred             eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence            5677889999999999999999999999999999987432 2343321         3455566666666666666554

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=92.19  E-value=0.33  Score=33.76  Aligned_cols=56  Identities=11%  Similarity=0.109  Sum_probs=40.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc-------ceEecCCccccc
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW-------YTIFKDHIRIMD   59 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~-------Gk~L~D~~tL~~   59 (73)
                      ++||+  .+|.+.+|.|+|++|+++|=+.+.++.+.+.+.---+|.       -|+|+|++.+-+
T Consensus        34 vkv~~--~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d   96 (281)
T 4gmv_A           34 IRVHM--SDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE   96 (281)
T ss_dssp             EEEEE--TTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred             EEEEe--cCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence            34555  468999999999999999999999888775444322332       477888776644

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}

Probab=92.12  E-value=0.42  Score=25.71  Aligned_cols=61  Identities=16%  Similarity=0.131  Sum_probs=37.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.|.|..++|+..  ++....|+.++-+.+....+  ..---...+|+...=     ++-+++|+.|.++
T Consensus         1 m~i~i~~p~g~~~--~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~Veiv   61 (73)
T 2kmm_A            1 MEVMVFTPKGEIK--RLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQVEVL   61 (73)
T ss_dssp             CCEEEECTTCCEE--EECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBEEEE
T ss_pred             CeEEEEcCCCCEE--EcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEEEEE
Confidence            4567777789875  55677899999777632221  112222457765432     2556778877765

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=91.98  E-value=0.78  Score=24.52  Aligned_cols=54  Identities=15%  Similarity=0.214  Sum_probs=39.6

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|+...  + +..||.+|.+.+    ++++..-....+|+.... ..-.+.-+++|+.|.++
T Consensus         5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~dgD~v~i~   58 (64)
T 2cu3_A            5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG-LEVPDRPLRDGDVVEVV   58 (64)
T ss_dssp             TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG-GGCCCCCCCTTCEEEEE
T ss_pred             CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc-cccCCcCCCCCCEEEEE
Confidence            677664  4 568999998876    677777777779988752 23344578999999875

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*

Probab=90.04  E-value=0.45  Score=27.80  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=28.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE   40 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~   40 (73)
                      |++|.+.+.+|+..++++.+..|+.+.=    .+.|++..
T Consensus         6 m~~V~~~~~~g~~~~v~~~~g~tLL~aa----~~~gi~i~   41 (108)
T 2bt6_A            6 KITVHFINRDGETLTTKGKIGDSLLDVV----VQNNLDID   41 (108)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHHH----HHTTCCCT
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHH----HHcCCCCC
Confidence            7899999889999999999999998652    23565544

>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4

Probab=88.98  E-value=1.3  Score=26.12  Aligned_cols=66  Identities=12%  Similarity=0.084  Sum_probs=43.1

Q ss_pred             CEEEEEEcCC---CCEEEEEeCCCCcHHHHHHHHHH--H-hCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRL---GKKVRVKCNPDDTIGDLKKLIAA--Q-TGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~---G~~~~v~v~~~~TV~~lK~~I~~--~-~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ||+|-|=...   .+.+.+++.+..||.++=+...-  . -.|......+--+|+...     .++-+++|+.|.++
T Consensus        12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy   83 (97)
T 2hj1_A           12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY   83 (97)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred             eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence            4455544332   24567788899999998776432  2 245555566767888776     44557999999874

>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}

Probab=88.80  E-value=0.11  Score=31.51  Aligned_cols=67  Identities=21%  Similarity=0.283  Sum_probs=39.0

Q ss_pred             EEEEEEcC------CCCEEEEEeCC----CCcHHHHHHHHHHHhCCCCccEEEEE-cc--e------EecCCc---cc--
Q psy4181           2 IEITCNDR------LGKKVRVKCNP----DDTIGDLKKLIAAQTGTRWEKIVLKK-WY--T------IFKDHI---RI--   57 (73)
Q Consensus         2 ~~i~vk~~------~G~~~~v~v~~----~~TV~~lK~~I~~~~gip~~~QrLif-~G--k------~L~D~~---tL--   57 (73)
                      |+|.||..      .|+...+++++    ..||++|=+.++++.  |.+.-+|+- +|  .      .|-|+.   -|  
T Consensus         5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g   82 (110)
T 2k9x_A            5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG   82 (110)
T ss_dssp             SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred             cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence            45566543      45666677763    359999988888875  222223321 22  1      333332   22  


Q ss_pred             cccCCCCCCEEEE
Q psy4181          58 MDYEIHDGMNLEL   70 (73)
Q Consensus        58 ~~y~I~~g~ti~L   70 (73)
                      .+|-+++|++|.+
T Consensus        83 ldt~L~dgD~V~f   95 (110)
T 2k9x_A           83 MDYVLNDGDTVEF   95 (110)
T ss_dssp             SCCCCCSSCEEEE
T ss_pred             cccCCCCcCEEEE
Confidence            2588999999865

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A

Probab=88.58  E-value=0.15  Score=28.47  Aligned_cols=47  Identities=17%  Similarity=0.242  Sum_probs=34.7

Q ss_pred             EEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181          15 RVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus        15 ~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L   70 (73)
                      .+++.+..||.+|.+.+    |+|++.-.+.-+|+....+     +-+++|+.|.+
T Consensus        24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i   70 (77)
T 1rws_A           24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEV   70 (77)
T ss_dssp             CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBC
T ss_pred             EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEE
Confidence            34566778999998764    5777777777799988654     46788887754

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=88.57  E-value=1.1  Score=32.91  Aligned_cols=45  Identities=13%  Similarity=0.125  Sum_probs=37.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC--ccEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW--EKIVLKK   46 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~--~~QrLif   46 (73)
                      +.+.|..++|....+.|+++.|+.+|-+.|+++.|+..  +---|.+
T Consensus       217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~  263 (555)
T 3au4_A          217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE  263 (555)
T ss_dssp             EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred             cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence            56778889999999999999999999999999999984  3345544

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=88.32  E-value=1.1  Score=30.58  Aligned_cols=55  Identities=16%  Similarity=0.096  Sum_probs=37.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc-------ceEecCCcccc
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW-------YTIFKDHIRIM   58 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~-------Gk~L~D~~tL~   58 (73)
                      +.||.  .+|...+|.|+++.|+++|=+.+.++-+.+.+.---+|.       -|+|+|++.+-
T Consensus        11 vkv~~--~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~   72 (256)
T 3hk0_A           11 VKVFS--EDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVV   72 (256)
T ss_dssp             EEEEE--TTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHH
T ss_pred             EEEEe--cCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHH
Confidence            34554  568999999999999999999998887765443333444       67788877654

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}

Probab=88.00  E-value=0.76  Score=26.87  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=23.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHH
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDL   27 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~l   27 (73)
                      |++|.+..++|+..++++.+..|+.+.
T Consensus         5 m~~v~~~~~~g~~~~~~~~~g~tlL~a   31 (109)
T 2y5c_A            5 VVNVVFVDRSGQRIPVSGRVGDNVLHL   31 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHH
T ss_pred             cEEEEEEcCCCCEEEEEECCCCcHHHH
Confidence            568888888999999999999999875

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A

Probab=87.80  E-value=2.3  Score=23.58  Aligned_cols=55  Identities=16%  Similarity=0.250  Sum_probs=35.8

Q ss_pred             EEeCCCCcHHHHHHHHHHHhC------C-----CCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181          16 VKCNPDDTIGDLKKLIAAQTG------T-----RWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        16 v~v~~~~TV~~lK~~I~~~~g------i-----p~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ++++...||.+|.+.+..+..      +     ....-....+|+..... .-.++-+++|+.|.++
T Consensus        19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~   84 (90)
T 2g1e_A           19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLF   84 (90)
T ss_dssp             EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEE
T ss_pred             EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEe
Confidence            456666899999999987741      0     11334556688766421 1134568999999875

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}

Probab=87.44  E-value=0.82  Score=27.97  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=28.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR   38 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip   38 (73)
                      |.+|.+.+++|...++++.+..|+.+.    +.+.|++
T Consensus        21 M~~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~   54 (126)
T 3hui_A           21 MAKINFVDHTGETRTVEVEEGATVMEA----AIRNAIP   54 (126)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSBHHHH----HHTTTCT
T ss_pred             ceEEEEEeCCCCEEEEEECCCCcHHHH----HHHcCCC
Confidence            789999999999999999999999875    3335665

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=87.24  E-value=3.2  Score=27.30  Aligned_cols=49  Identities=12%  Similarity=0.054  Sum_probs=37.0

Q ss_pred             cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccE-EEEE------cceEecCCcc
Q psy4181           8 DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKI-VLKK------WYTIFKDHIR   56 (73)
Q Consensus         8 ~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Q-rLif------~Gk~L~D~~t   56 (73)
                      ..+|.+.++.|+++.|..+|-+.+.++.+++.+.. .|+=      --+.|+|++.
T Consensus        41 ~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~   96 (291)
T 3tca_A           41 MDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHEN   96 (291)
T ss_dssp             CTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSB
T ss_pred             cCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchh
Confidence            45789999999999999999999999999876543 3321      1356776653

>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A

Probab=87.01  E-value=2  Score=25.46  Aligned_cols=60  Identities=10%  Similarity=0.200  Sum_probs=41.9

Q ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHhCCCCc-----------cEEEEEcc-eEecC------CccccccCCCCCCEEEE
Q psy4181          11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWE-----------KIVLKKWY-TIFKD------HIRIMDYEIHDGMNLEL   70 (73)
Q Consensus        11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~-----------~QrLif~G-k~L~D------~~tL~~y~I~~g~ti~L   70 (73)
                      +....++|+++.|..+|-+.+.++-.....           ...|+..+ ..|+.      ..+|.+.|+.+|..|++
T Consensus         4 ~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~V   81 (98)
T 1y8x_B            4 QLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAV   81 (98)
T ss_dssp             -CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEE
T ss_pred             CCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEE
Confidence            345678999999999999999995432222           44555444 23433      45789999999998876

>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A

Probab=86.86  E-value=1.9  Score=26.92  Aligned_cols=50  Identities=16%  Similarity=0.146  Sum_probs=35.3

Q ss_pred             CCcHHHHHHHHHHHhCCCC-------ccEEEEEcceEecC--CccccccCCCCCCEEEEE
Q psy4181          21 DDTIGDLKKLIAAQTGTRW-------EKIVLKKWYTIFKD--HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        21 ~~TV~~lK~~I~~~~gip~-------~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L~   71 (73)
                      ..|..+|-+.+.++.|.+-       .++||+|.= -++|  ++||++.|+++|+.|-+.
T Consensus        19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~-DfDDnl~k~L~dLgv~~gsfLtv~   77 (127)
T 3onh_A           19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDY-DFEDLNDRTLSEINLGNGSIILFS   77 (127)
T ss_dssp             HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEET-TBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred             ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCC-CccccccCcHHHcCcCCCcEEEEE
Confidence            4699998888988888763       134444432 1233  679999999999988653

>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}

Probab=86.25  E-value=0.3  Score=30.00  Aligned_cols=66  Identities=15%  Similarity=0.205  Sum_probs=48.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc--cEEEEEcc---eEecCCccccccCCCCCCEEE
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE--KIVLKKWY---TIFKDHIRIMDYEIHDGMNLE   69 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~--~QrLif~G---k~L~D~~tL~~y~I~~g~ti~   69 (73)
                      .|+|.+.+ ...++.|..+.-|+-|-.++-|+.+++-+  .--|-.--   -.|+-..||+.|||+....++
T Consensus        28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~   98 (112)
T 2lgx_A           28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQ   98 (112)
T ss_dssp             ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBC
T ss_pred             EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccce
Confidence            56676654 78888888889999999999998877643  22222211   135778999999999987664

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=84.85  E-value=2.2  Score=32.50  Aligned_cols=38  Identities=13%  Similarity=0.074  Sum_probs=35.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW   39 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~   39 (73)
                      |.+.|..++|....+.|+++.|+.+|=++|+.+.|+.-
T Consensus       264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e  301 (655)
T 3pvl_A          264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD  301 (655)
T ss_dssp             EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred             eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence            56788899999999999999999999999999999864

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=84.51  E-value=1.3  Score=26.46  Aligned_cols=38  Identities=11%  Similarity=0.005  Sum_probs=30.7

Q ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-----EEEEEcc
Q psy4181          11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-----IVLKKWY   48 (73)
Q Consensus        11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-----QrLif~G   48 (73)
                      +..+++-|.++.+-.+|..+|.++.++++..     .+|-|..
T Consensus        22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD   64 (98)
T 1q1o_A           22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD   64 (98)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence            6679999999999999999999999986333     3566643

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=82.79  E-value=5.2  Score=23.32  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=26.8

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTR   38 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip   38 (73)
                      .+-.+.+.|.++-+..+|+.+|.+|..+.
T Consensus        20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~   48 (85)
T 1ip9_A           20 KDDIFALMLKGDTTYKELRSKIAPRIDTD   48 (85)
T ss_dssp             TTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            56789999999999999999999999994

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2

Probab=82.03  E-value=1.5  Score=24.98  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=27.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK   41 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~   41 (73)
                      |++|.+.+..|...++++.+..|+.+.=..    .|+++..
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~----~gi~i~~   40 (98)
T 1jq4_A            4 VHTITAVTEDGESLRFECRSDEDVITAALR----QNIFLMS   40 (98)
T ss_dssp             EEEEEEEETTTEEEEEEEESCCTHHHHHHH----HTCCCCC
T ss_pred             cEEEEEEecCCCcEEEEeCCCChHHHHHHH----cCCCCcC
Confidence            578888877788889999999999876433    4655433

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}

Probab=81.45  E-value=3.7  Score=23.47  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=26.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW   39 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~   39 (73)
                      +++|.+.+.+|+..++++.+..|+.+.=.    +.|+++
T Consensus         3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~----~~gi~i   37 (103)
T 2wlb_A            3 GIKVFFVTPEGREIMIEGNEGDSILDLAH----ANNIDL   37 (103)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCBHHHHHH----HTTCCC
T ss_pred             ceEEEEEeCCCCEEEEEECCCCHHHHHHH----HcCCCc
Confidence            46788888899989999999999987633    246553

>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}

Probab=81.17  E-value=6.1  Score=22.99  Aligned_cols=44  Identities=18%  Similarity=0.061  Sum_probs=31.0

Q ss_pred             CEEEEEEcCCCCE-EEEEeC-CCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181           1 MIEITCNDRLGKK-VRVKCN-PDDTIGDLKKLIAAQTGTRWEKIVL   44 (73)
Q Consensus         1 ~~~i~vk~~~G~~-~~v~v~-~~~TV~~lK~~I~~~~gip~~~QrL   44 (73)
                      |--|+-|..+.+. -++.++ +..+|.+||..|.++.+.-...--|
T Consensus         6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL   51 (86)
T 2c7h_A            6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL   51 (86)
T ss_dssp             BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred             eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence            6677888776643 344553 6889999999999998775444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	73
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	4e-23
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	3e-15
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	8e-11
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	1e-07
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	3e-07
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	3e-07
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	9e-07
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	1e-06
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	3e-06
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-06
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-06
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	9e-06
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	2e-05
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	3e-05
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	3e-05
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	4e-05
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	1e-04
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	1e-04
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	2e-04
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	3e-04
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	0.001
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	0.001
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	0.001
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	0.001
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	0.001
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	0.001
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	0.002
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	0.002
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	0.003
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	0.004
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	0.004

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.0 bits (202), Expect = 4e-23
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query: 1   MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
           MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct: 28  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 87

Query: 61  EIHDGMNLELYYQ 73
           EIHDGMNLELYYQ
Sbjct: 88  EIHDGMNLELYYQ 100

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.6 bits (149), Expect = 3e-15
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          MIE+  NDRLGKKVRVKC  +D++GD KK+++ Q GT+  KIVL+K  ++ KDHI + DY
Sbjct: 1  MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY 60

Query: 61 EIHDGMNLELYY 72
          E+HD  NLELYY
Sbjct: 61 EVHDQTNLELYY 72

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 8e-11
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 1   MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
           +I++T      +K       + ++   K+ I+ +  ++ +++VL     I KD   ++ +
Sbjct: 32  IIKVTVKT-PKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH 90

Query: 61  EIHDGMNLEL 70
            IHDG+ + L
Sbjct: 91  GIHDGLTVHL 100

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (101), Expect = 1e-07
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 2  IEITCNDR--LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIM- 58
          I + C  R        ++ NPD  + + + L   ++G   E+  +     +  D    + 
Sbjct: 10 ITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLG 69

Query: 59 DYEIHDGMNLEL 70
           Y + DG  + L
Sbjct: 70 SYGLKDGDMVVL 81

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 3e-07
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
            K  VK   D T  +LK+ I + TG       +  +  +  +   + + ++  G  + +
Sbjct: 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKV-MYKGLVPEDKTLREIKVTSGAKIMV 84

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 3e-07
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          G+ +       D +  +K  I   TG    K  L+      KD   +  Y + +G  + L
Sbjct: 21 GQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHL 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 9e-07
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
          +I++T       K         TI  LK+ I+ +     +++VL     I KD   +   
Sbjct: 7  LIKVTVKT-PKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC 65

Query: 61 EIHDGMNLEL 70
           + DG+ + L
Sbjct: 66 GVRDGLTVHL 75

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 1e-06
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 2  IEITCNDRL--GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMD 59
          IE+    RL   +K  ++     T  +L+  IA   G +   I +       +    + +
Sbjct: 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 60 YEIHDG 65
            +   
Sbjct: 78 QGVAHN 83

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (91), Expect = 3e-06
 Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 2  IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL-------KKWYTIFKDH 54
          + I+ +     +   + +   TI + K  +    G+    + L       K +  + ++ 
Sbjct: 10 VFISSSLN-SFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQED 68

Query: 55 IRIMDYEIHDGMNLEL 70
            +  Y + DG  + +
Sbjct: 69 ALLGSYPVDDGCRIHV 84

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (89), Expect = 3e-06
 Identities = 16/61 (26%), Positives = 22/61 (36%)

Query: 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLE 69
             K  V   P+ T+   K+ I    G       L     I KD   +  Y I DG ++ 
Sbjct: 9  GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVH 68

Query: 70 L 70
          L
Sbjct: 69 L 69

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (90), Expect = 3e-06
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLE 69
                     +  +   KK I+       +++VL     I +D   +    I DG  + 
Sbjct: 18 PQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVH 77

Query: 70 L 70
          +
Sbjct: 78 V 78

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 9e-06
 Identities = 17/69 (24%), Positives = 29/69 (42%)

Query: 2  IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE 61
          I++   +  G       NP+  I  LK+ I  Q G   ++  L+    + +D + +  Y 
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 62 IHDGMNLEL 70
          I D   L L
Sbjct: 68 IQDSDTLIL 76

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 2e-05
 Identities = 10/78 (12%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 2  IEITCNDRL-GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL--------KKWYTIFK 52
          ++I C+++   + +  +     T+  +K L++        +++L         +   +  
Sbjct: 12 LKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELEN 71

Query: 53 DHIRIMDYEIHDGMNLEL 70
          D   +  Y + +G  L +
Sbjct: 72 DLQPLQFYSVENGDCLLV 89

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 3e-05
 Identities = 9/69 (13%), Positives = 25/69 (36%)

Query: 2  IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE 61
           ++      GK +++     DT+  +K+ + A  G                D ++  + +
Sbjct: 4  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 62 IHDGMNLEL 70
          I     +++
Sbjct: 64 IPKDYVVQV 72

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.5 bits (84), Expect = 3e-05
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 11  GKKVRVKCNP-DDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLE 69
           G+ + +      + +G LK+ IA +      K  L       KD++ +  Y +  G  L 
Sbjct: 40  GQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILT 99

Query: 70  L 70
           L
Sbjct: 100 L 100

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 4e-05
 Identities = 9/70 (12%), Positives = 26/70 (37%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
           + I   +  G+    +     T+  LK+ ++   G + +   L       +D + + +Y
Sbjct: 3  PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY 62

Query: 61 EIHDGMNLEL 70
           +     + +
Sbjct: 63 GLKPLSTVFM 72

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.1 bits (78), Expect = 1e-04
 Identities = 17/68 (25%), Positives = 25/68 (36%)

Query: 3  EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI 62
           I      GK++ +   P DTI  +K+ +  + G    +  L        D     DY I
Sbjct: 2  LIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 61

Query: 63 HDGMNLEL 70
            G  L L
Sbjct: 62 EGGSVLHL 69

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 1e-04
 Identities = 10/63 (15%), Positives = 22/63 (34%)

Query: 2  IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE 61
          +E+       +           + + K+ IAA      EK  L     + +D  ++ +Y 
Sbjct: 1  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 62 IHD 64
          +  
Sbjct: 61 VGG 63

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (78), Expect = 2e-04
 Identities = 8/60 (13%), Positives = 27/60 (45%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
               V+ + D +I  LK+++A + G   +++ +        +H+ + + ++     + +
Sbjct: 12 SYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHI 71

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.8 bits (77), Expect = 3e-04
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK---IVLKKWYTIFKDHIRI 57
           + I       +      + DDT+ DLK+ +   TG   E+   + LK      ++ +++
Sbjct: 7  GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 58 MDYEIHDGMNLEL 70
             ++     + +
Sbjct: 67 GALKLKPNTKIMM 79

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (73), Expect = 0.001
 Identities = 8/52 (15%), Positives = 18/52 (34%)

Query: 19 NPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          +    + +L++ I            L       +D   + DYE+     ++L
Sbjct: 20 SRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQL 71

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 32.1 bits (73), Expect = 0.001
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 7/67 (10%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL-------KKWYTIFKDHIRIMDYEIH 63
             +  K     ++ DLKK +    GT  + + +       +    +      + D  + 
Sbjct: 15 DFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR 74

Query: 64 DGMNLEL 70
          DG  +  
Sbjct: 75 DGYRIHA 81

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (73), Expect = 0.001
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 18 CNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK-DHIRIMDYEIHDGMNLEL 70
           + +  + DL +++    G       L       K     +    I DG  + L
Sbjct: 22 GSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVML 75

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (72), Expect = 0.001
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 3  EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT--IFKDHIRIMDY 60
          ++T     G + +V  +   ++ +LK  I  + G    +  L    +    +D + +   
Sbjct: 2  DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 61 EIHDGMNLEL 70
           +  G  + L
Sbjct: 62 GLGPGSTVLL 71

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (72), Expect = 0.001
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 19 NPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
          +   TI +L++ + A    R E   L       ++   + DY++     ++L
Sbjct: 20 SRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQL 71

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (72), Expect = 0.001
 Identities = 17/69 (24%), Positives = 29/69 (42%)

Query: 2  IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE 61
          ++I      GK + ++  P DTI ++K  I  + G   ++  L       +D   + DY 
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 62 IHDGMNLEL 70
          I     L L
Sbjct: 61 IQKESTLHL 69

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.9 bits (72), Expect = 0.002
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 8/68 (11%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIV-----LKKWY---TIFKDHIRIMDYEI 62
          GK      +P+D+  D+ K +       WE+       + +          ++ +   ++
Sbjct: 26 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKL 85

Query: 63 HDGMNLEL 70
            G    +
Sbjct: 86 PFGKTTVM 93

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.5 bits (71), Expect = 0.002
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
           K   V+ N D+     K  + A TG +  +  +       KD     + ++ +GM + +
Sbjct: 17 EKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLM 75

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.2 bits (70), Expect = 0.003
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 16/86 (18%)

Query: 1  MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGT----------RWEKIVLKKWYTI 50
           + +      G+ + V    + T+ DLKK I                     V + ++  
Sbjct: 7  GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 51 FKDHIR------IMDYEIHDGMNLEL 70
                      + DY I +   +  
Sbjct: 67 SAGEKLTEDRKKLRDYGIRNRDEVSF 92

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.0 bits (70), Expect = 0.004
 Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 2  IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY--TIFKDHIRIMD 59
          + +   ++  + + +  +   ++G LK  ++     R      +  Y   +  DH  + D
Sbjct: 10 LLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRD 69

Query: 60 YEIHD 64
               
Sbjct: 70 LLPKQ 74

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.0 bits (70), Expect = 0.004
 Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 2  IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE 61
          I +        +      P+DT+G LK        ++ + I   +   +      +    
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQMKLIYQGRL--LQDPARTLSSLN 65

Query: 62 IHDGMNLEL 70
          I +   +  
Sbjct: 66 ITNNCVIHC 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	73
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	100.0
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	100.0
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	100.0
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	100.0
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.98
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.97
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.97
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.97
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.97
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.97
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.96
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.96
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.96
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.96
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.95
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.95
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.94
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.94
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.94
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.93
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.93
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.92
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.92
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.92
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.91
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.91
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.9
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.9
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.89
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.86
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.83
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.81
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.81
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.8
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.76
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	99.27
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	98.58
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	98.03
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.76
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	97.66
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	97.25
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	95.81
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	94.67
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	93.35
d1gg3a3	81	Erythroid membrane protein 4.1R {Human (Homo sapie	92.31
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	92.24
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	91.33
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	90.87
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.64
d1c1yb_	77	c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}	90.52
d1vlba2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	89.63
d2incc1	83	Toluene, o-xylene monooxygenase oxygenase subunit	89.16
d1t3qa2	81	Quinoline 2-oxidoreductase small subunit QorS, N-d	88.96
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	88.58
d2bt6a1	104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	87.65
d1jq4a_	98	Methane monooxygenase reductase N-terminal domain	87.08
d2h2ja1	176	RuBisCo LSMT C-terminal, substrate-binding domain	86.2
d1zud21	65	Thiamin biosynthesis sulfur carrier protein ThiS {	86.07
d2cu3a1	63	Uncharacterised protein TTHA0675 {Thermus thermoph	81.62

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-34  Score=167.31  Aligned_cols=72  Identities=60%  Similarity=0.968  Sum_probs=71.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ||+|+||+++|++++++|+|++||++||++|+++.|+||++|||+|+|+.|+|+.||++|||++|+||||+|
T Consensus         1 mi~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             CEEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.3e-33  Score=160.54  Aligned_cols=72  Identities=24%  Similarity=0.296  Sum_probs=70.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|++++++|+|++||++||++|++++|+||++|||+|+|++|+|+.||++|||++|+||||+.|
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlr   72 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA   72 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEee
Confidence            799999999999999999999999999999999999999999999999999999999999999999999865

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-33  Score=160.28  Aligned_cols=73  Identities=12%  Similarity=0.175  Sum_probs=71.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +||||||+++|++++++|+|++||++||++|++++|+||++|||+|+|+.|+|+.||++|||++|+||||+-|
T Consensus         3 ~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lR   75 (76)
T d1z2ma2           3 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   75 (76)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999865

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-32  Score=160.84  Aligned_cols=72  Identities=11%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+||||+.+|++++++|++++||++||++|++++|+||++|||+|+|+.|+|+.||++|||++|+||||+-|
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R   74 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR   74 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEES
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEec
Confidence            899999999999999999999999999999999999999999999999999999999999999999999864

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=4.6e-33  Score=169.68  Aligned_cols=73  Identities=89%  Similarity=1.456  Sum_probs=72.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||+|+||+.+|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|+||+|+||
T Consensus        28 ~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~~  100 (100)
T d1uh6a_          28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ  100 (100)
T ss_dssp             EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEEC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999998

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-32  Score=157.46  Aligned_cols=72  Identities=15%  Similarity=0.113  Sum_probs=69.4

Q ss_pred             EEEEEEcCCCC-EEEEE-eCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGK-KVRVK-CNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~-~~~v~-v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+||||+++|+ +++++ ++|++||++||++|++++|||+++|||+|+|+.|+|+.||++|||++|+||||+.|
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r   74 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR   74 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEE
Confidence            89999999996 89885 89999999999999999999999999999999999999999999999999999876

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-32  Score=160.43  Aligned_cols=73  Identities=23%  Similarity=0.223  Sum_probs=70.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      .||||||+++|++++++|+|++||++||++|++++|||+++|||+|+||+|+|+.||++|||++|+||||.-+
T Consensus         7 ~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r   79 (87)
T d1wh3a_           7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK   79 (87)
T ss_dssp             SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEec
Confidence            4999999999999999999999999999999999999999999999999999999999999999999999753

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-31  Score=155.04  Aligned_cols=72  Identities=24%  Similarity=0.322  Sum_probs=70.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||||||+++|++++++|+|++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|+||||.-|
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~r   72 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999999999999999754

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-31  Score=155.76  Aligned_cols=71  Identities=13%  Similarity=0.135  Sum_probs=69.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      ||||||+++|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|+||||+.
T Consensus         4 ~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi   74 (80)
T d1ttna1           4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIV   74 (80)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEe
Confidence            79999999999999999999999999999999999999999999999999999999999999999999975

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.1e-32  Score=155.12  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|++++++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++||| +|+||||+.|
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r   71 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER   71 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEec
Confidence            8999999999999999999999999999999999999999999999999999999999999 5899999754

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.6e-31  Score=153.03  Aligned_cols=72  Identities=18%  Similarity=0.158  Sum_probs=69.2

Q ss_pred             EEEEEEcCCC-CEEEE-EeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLG-KKVRV-KCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G-~~~~v-~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++| +++++ +|+|++||++||++|++++|||+++|||+|+|++|+|+.||++|||++|++|||+.|
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~r   74 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR   74 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEc
Confidence            8999999999 68888 599999999999999999999999999999999999999999999999999999875

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.4e-30  Score=152.17  Aligned_cols=72  Identities=17%  Similarity=0.266  Sum_probs=69.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTG---TRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~g---ip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+++|++++++|+|++||++||++|+++.|   +|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~   75 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT   75 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEEC
Confidence            89999999999999999999999999999999876   9999999999999999999999999999999999753

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=146.37  Aligned_cols=71  Identities=15%  Similarity=0.199  Sum_probs=68.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE--cceEecCCccccccCCCCCCEEEEEeC
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK--WYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif--~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|.||+++|++++++|+|++||.+||++|+++.|+||++|||+|  +|+.|+|+.||++|||++|+||||+-+
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEE
Confidence            79999999999999999999999999999999999999999999  799999999999999999999999753

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=149.24  Aligned_cols=72  Identities=22%  Similarity=0.265  Sum_probs=68.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ||+|+||++++ +++++|+|++||++||++|++++|+|+++|||+|+|+.|+|+.||++|||++|+||||+-|
T Consensus         7 ~i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r   78 (84)
T d1yqba1           7 LIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK   78 (84)
T ss_dssp             EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred             EEEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEEC
Confidence            79999999755 6899999999999999999999999999999999999999999999999999999999854

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.7e-29  Score=143.25  Aligned_cols=71  Identities=24%  Similarity=0.311  Sum_probs=67.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|+||+. |++++++|+|++||++||++|++++|+|+++|||+|+|+.|+|+.||++|||++|++|||+-+
T Consensus         2 i~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            89999985 567999999999999999999999999999999999999999999999999999999999853

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-29  Score=145.72  Aligned_cols=71  Identities=24%  Similarity=0.302  Sum_probs=68.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTG---TRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~g---ip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|+|+||+++|++++++|+|++||++||++|+++.|   +||++|||+|+||.|+|+.||++|||++|++|++.
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~   75 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM   75 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEE
Confidence            589999999999999999999999999999999988   99999999999999999999999999999999875

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.9e-28  Score=146.79  Aligned_cols=72  Identities=21%  Similarity=0.332  Sum_probs=68.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||++.| +++++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.||++|||++|++|||+.|
T Consensus        32 ~i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          32 IIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CEEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             eEEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            69999999765 6799999999999999999999999999999999999999999999999999999999875

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2e-28  Score=143.71  Aligned_cols=72  Identities=15%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|+|+||++.+ ..+++|+|++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|+||||+-|
T Consensus        10 ~i~v~Vk~~~~-~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1          10 IIRVSVKTPQD-CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             EEEEEEECSSS-EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             eEEEEEEcCCC-cEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEe
Confidence            59999999655 5689999999999999999999999999999999999999999999999999999999753

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.7e-27  Score=148.15  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=69.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHH--------HHHhCCCCccEEEEEcceEecCCccccccCCCCCCE--EEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLI--------AAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMN--LEL   70 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I--------~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~t--i~L   70 (73)
                      ||+|+||+++|+++++.|+|++||.+||++|        +++.|+||++|||||+||.|+|+.||++|+|++|++  |||
T Consensus        16 ~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~lhl   95 (116)
T d1wgha_          16 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL   95 (116)
T ss_dssp             SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred             eEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEEEE
Confidence            6999999999999999999999999999999        578999999999999999999999999999999986  788


Q ss_pred             EeC
Q psy4181          71 YYQ   73 (73)
Q Consensus        71 ~~~   73 (73)
                      +.|
T Consensus        96 v~r   98 (116)
T d1wgha_          96 VAR   98 (116)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            764

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=136.45  Aligned_cols=65  Identities=20%  Similarity=0.172  Sum_probs=62.9

Q ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ++|++++++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|+||||+-+
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r   83 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALK   83 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEES
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999743

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=2.6e-26  Score=140.12  Aligned_cols=72  Identities=14%  Similarity=0.178  Sum_probs=67.8

Q ss_pred             EEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHH-----hCCC--CccEEEEEcceEecCCccccccCCCCCC------E
Q psy4181           2 IEITCNDRLGKKV-RVKCNPDDTIGDLKKLIAAQ-----TGTR--WEKIVLKKWYTIFKDHIRIMDYEIHDGM------N   67 (73)
Q Consensus         2 ~~i~vk~~~G~~~-~v~v~~~~TV~~lK~~I~~~-----~gip--~~~QrLif~Gk~L~D~~tL~~y~I~~g~------t   67 (73)
                      |+|+||+++|+.+ ++.++|++||.+||++|++.     +|+|  +++|||||+||+|+|+.||++|+|.+|+      |
T Consensus         8 i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~~~t   87 (101)
T d1se9a_           8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   87 (101)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCCceE
Confidence            8999999999987 69999999999999999876     8998  8899999999999999999999999998      9


Q ss_pred             EEEEeC
Q psy4181          68 LELYYQ   73 (73)
Q Consensus        68 i~L~~~   73 (73)
                      +||+-|
T Consensus        88 mHlVvr   93 (101)
T d1se9a_          88 MHVIIQ   93 (101)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999854

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=6.2e-27  Score=144.47  Aligned_cols=72  Identities=21%  Similarity=0.326  Sum_probs=68.1

Q ss_pred             EEEEEEcC-CCCEEEEEeCC-CCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDR-LGKKVRVKCNP-DDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~-~G~~~~v~v~~-~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ++|+|++. +|++++++|.| ++||.+||++|++++|+|+++|||+|+|+.|+|+.||++|||++|+||||+.+
T Consensus        30 i~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr  103 (111)
T d1we6a_          30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             EEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred             EEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEee
Confidence            67888776 69999999998 99999999999999999999999999999999999999999999999999875

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.6e-26  Score=138.98  Aligned_cols=72  Identities=21%  Similarity=0.314  Sum_probs=68.3

Q ss_pred             EEEEE----EcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEec-CCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITC----NDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK-DHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~v----k~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~-D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |.|+|    |+++|.+++++|+|++||.+||++|+++.|||+++|||+|+||.|. |..||++|||++|++|||+.+
T Consensus         8 m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             EEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            78999    9999999999999999999999999999999999999999999995 678999999999999999753

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.2e-26  Score=141.61  Aligned_cols=72  Identities=18%  Similarity=0.165  Sum_probs=68.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEE---------------EEEcceEecCC-ccccccCCCC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIV---------------LKKWYTIFKDH-IRIMDYEIHD   64 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Qr---------------Lif~Gk~L~D~-~tL~~y~I~~   64 (73)
                      +|+|+||+++|+.++|+|++++||++||++|++++|+|+++||               |+|+|+.|.|+ .||.+|||++
T Consensus         7 ~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~   86 (105)
T d1v2ya_           7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN   86 (105)
T ss_dssp             SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred             cEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCC
Confidence            5999999999999999999999999999999999999999998               99999999765 6999999999


Q ss_pred             CCEEEEEe
Q psy4181          65 GMNLELYY   72 (73)
Q Consensus        65 g~ti~L~~   72 (73)
                      |+||||+=
T Consensus        87 g~~l~lv~   94 (105)
T d1v2ya_          87 RDEVSFIK   94 (105)
T ss_dssp             SEEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999974

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.7e-26  Score=137.31  Aligned_cols=70  Identities=19%  Similarity=0.098  Sum_probs=67.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|+|.||+..|+.+.++|++++||.+||++|++..|+|+++|||+|.|+.|+|+ ||++|||++|++|||.
T Consensus         7 ~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv   76 (96)
T d1wgga_           7 GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMM   76 (96)
T ss_dssp             EEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECC
T ss_pred             ceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEE
Confidence            489999999998889999999999999999999999999999999999999985 8999999999999985

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-25  Score=137.66  Aligned_cols=71  Identities=13%  Similarity=0.121  Sum_probs=65.1

Q ss_pred             EEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCC-------CCCCEEEEEeC
Q psy4181           3 EITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI-------HDGMNLELYYQ   73 (73)
Q Consensus         3 ~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I-------~~g~ti~L~~~   73 (73)
                      ||||+...|+ ++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.||++|||       +.+.+++|.|+
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~~   79 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   79 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEEe
Confidence            5888888775 77899999999999999999999999999999999999999999999999       45669999874

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-25  Score=135.76  Aligned_cols=71  Identities=13%  Similarity=0.024  Sum_probs=67.7

Q ss_pred             EEEEE--EcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181           2 IEITC--NDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~v--k~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+||+  |...|++++++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||+++++||+.-
T Consensus        18 i~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~   90 (100)
T d1wjua_          18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE   90 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred             EEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEE
Confidence            68888  678899999999999999999999999999999999999999999999999999999999999863

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.1e-24  Score=131.14  Aligned_cols=68  Identities=13%  Similarity=0.096  Sum_probs=63.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEec-CCccccccCCCCCCEEEEEe
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK-DHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~-D~~tL~~y~I~~g~ti~L~~   72 (73)
                      |+|+||+++|+.+.++|+|++||.+||++|+   .+|+++|||||+||.|. |..||++|||++|++|||.-
T Consensus         8 m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~   76 (95)
T d1wiaa_           8 INVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHR   76 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEE
Confidence            8999999999999999999999999999986   56889999999999996 67899999999999999974

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-24  Score=129.38  Aligned_cols=71  Identities=15%  Similarity=0.110  Sum_probs=64.2

Q ss_pred             EEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHHhC--CCCccEEEEEcceEecCCccccccCCC--CCCEEEEEe
Q psy4181           2 IEITCNDRLGK--KVRVKCNPDDTIGDLKKLIAAQTG--TRWEKIVLKKWYTIFKDHIRIMDYEIH--DGMNLELYY   72 (73)
Q Consensus         2 ~~i~vk~~~G~--~~~v~v~~~~TV~~lK~~I~~~~g--ip~~~QrLif~Gk~L~D~~tL~~y~I~--~g~ti~L~~   72 (73)
                      |+|+||+++++  .++++|++++||++||++|+++.|  +|+++|||||+||+|+|+.||++|+.+  ++.||||+.
T Consensus         8 i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~   84 (93)
T d1wgda_           8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred             EEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEe
Confidence            78999999876  488999999999999999999965  999999999999999999999999765  455999985

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.2e-24  Score=130.40  Aligned_cols=69  Identities=16%  Similarity=0.101  Sum_probs=66.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      ||.|.|+. +|++++++|++++||.+||++|++.+|+|+++|||+|+|+ |+|+.||++|+|++|++|+|+
T Consensus        17 ~i~v~V~~-~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lv   85 (95)
T d1v86a_          17 LVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVV   85 (95)
T ss_dssp             CEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEEC
T ss_pred             EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEE
Confidence            68999996 9999999999999999999999999999999999999997 999999999999999999985

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.2e-24  Score=127.68  Aligned_cols=70  Identities=19%  Similarity=0.193  Sum_probs=65.6

Q ss_pred             CEEEEEEcCCCCEEEE-EeCCCCcHHHHHHHHHHHhCCCCccEEEE---EcceEecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRV-KCNPDDTIGDLKKLIAAQTGTRWEKIVLK---KWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v-~v~~~~TV~~lK~~I~~~~gip~~~QrLi---f~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +|.|+||. .|+.+.+ +|++++||.+||++|+++.|+||++|||+   |.|+.|+|+.||++|||++|++|||+
T Consensus         7 ~~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv   80 (90)
T d1v5ta_           7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM   80 (90)
T ss_dssp             SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEE
T ss_pred             cEEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEE
Confidence            58899997 6777777 79999999999999999999999999999   79999999999999999999999986

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.8e-23  Score=120.25  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=63.9

Q ss_pred             EEEEEEcCCCCEEEEEe-----CCCCcHHHHHHHHHHHhCCCCccEEEEEcceEec-CCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKC-----NPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK-DHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v-----~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~-D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.|.|+. .+..++++|     ++++||++||++|++..|+|+++|+|+|+|+.|+ |+.||++|||++|++|+|.
T Consensus         2 i~i~V~~-~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv   76 (81)
T d1wxva1           2 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI   76 (81)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred             EEEEEEE-CCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEE
Confidence            7899987 788888988     5789999999999999999999999999999996 6789999999999999986

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.8e-22  Score=118.80  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=65.8

Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcce-------EecCCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDR-LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT-------IFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~-~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk-------~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      .|.|||++. ++......+++++||.+||++|+...|+||++|||+|.|+       .++|+.+|++|+|++|++|||+
T Consensus         7 ~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlv   85 (95)
T d1v6ea_           7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             cEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEE
Confidence            478999984 7777888999999999999999999999999999999887       4789999999999999999996

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.83  E-value=1.6e-20  Score=108.55  Aligned_cols=71  Identities=13%  Similarity=0.121  Sum_probs=67.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |.|.|++ +|+.+.+.|.+++++..||+.++++.|+|+++|||+|+|+.|.|+.|+++|||++|++||++.+
T Consensus         5 I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~   75 (79)
T d1euvb_           5 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   75 (79)
T ss_dssp             EEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             EEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEe
Confidence            6788887 7899999999999999999999999999999999999999999999999999999999999864

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.5e-20  Score=111.03  Aligned_cols=70  Identities=11%  Similarity=0.099  Sum_probs=63.1

Q ss_pred             EEEEEEc---CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceE-------ec-CCccccccCCCCCCEEEE
Q psy4181           2 IEITCND---RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI-------FK-DHIRIMDYEIHDGMNLEL   70 (73)
Q Consensus         2 ~~i~vk~---~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~-------L~-D~~tL~~y~I~~g~ti~L   70 (73)
                      |+|.|+.   ++++.+++.+++++||.+||.+|+..+|+|+++|||+|.|+.       |+ |..||.+|||++|++||+
T Consensus        10 iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V   89 (97)
T d1wjna_          10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEE
Confidence            6778874   468899999999999999999999999999999999998873       43 789999999999999998


Q ss_pred             E
Q psy4181          71 Y   71 (73)
Q Consensus        71 ~   71 (73)
                      .
T Consensus        90 ~   90 (97)
T d1wjna_          90 R   90 (97)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=104.59  Aligned_cols=72  Identities=11%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |.|.||+.+|+.+.+.|.++.++..|++..+++.|+|++++||+|+|+.|.++.|+++|++++|++|+++.+
T Consensus         3 I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~   74 (77)
T d2uyzb1           3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE   74 (77)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            789999999999999999999999999999999999999999999999999999999999999999999864

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=4.5e-20  Score=110.91  Aligned_cols=55  Identities=25%  Similarity=0.171  Sum_probs=49.7

Q ss_pred             CCCCcHHHHHHHHHHHh--CCC-CccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181          19 NPDDTIGDLKKLIAAQT--GTR-WEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus        19 ~~~~TV~~lK~~I~~~~--gip-~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      ..+.||.+||++|+++.  ++| |++|||||+||.|+|+.||++|||++|+||||+.|
T Consensus        35 ~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEES
T ss_pred             CCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCCCCCEEEEEEe
Confidence            34789999999999985  444 79999999999999999999999999999999875

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=1.8e-18  Score=102.34  Aligned_cols=70  Identities=14%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             EEEEEEc-CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcce-------EecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCND-RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT-------IFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~-~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk-------~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      +.+.|.+ .++......++++.||.+||++|+...|+||+.|||+|.|+       .++|..+|.+|||++|++||++
T Consensus         5 ~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvv   82 (90)
T d1t0ya_           5 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   82 (90)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             EEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEE
Confidence            4566665 35556777889999999999999999999999999999887       3568999999999999999986

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.6e-12  Score=73.44  Aligned_cols=70  Identities=14%  Similarity=0.206  Sum_probs=67.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.|.|++.+|+.+.+.|.++.+...|....+++.|+|+.+.+++|.|+.+..+.|-+++++++|++|..+
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            7899999999999999999999999999999999999999999999999999999999999999999864

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.27  E-value=1.8e-12  Score=77.08  Aligned_cols=69  Identities=25%  Similarity=0.317  Sum_probs=55.6

Q ss_pred             EEEEcCCCCEEEEEeCC-CCcHHHHHHHHHHHhCCCCccEEEEE--------------cceEecC-CccccccCCCCCCE
Q psy4181           4 ITCNDRLGKKVRVKCNP-DDTIGDLKKLIAAQTGTRWEKIVLKK--------------WYTIFKD-HIRIMDYEIHDGMN   67 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~~-~~TV~~lK~~I~~~~gip~~~QrLif--------------~Gk~L~D-~~tL~~y~I~~g~t   67 (73)
                      |-|++.+|... ++|+. +.||.+||.+|++..++|.++|+|--              .-..|.| ..+|+++||.+|+.
T Consensus         3 iRiRsrdG~eR-v~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDGLER-VSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSCEEE-EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCCceE-EEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            55777777554 88864 78999999999999999999999932              2223554 56799999999999


Q ss_pred             EEEEeC
Q psy4181          68 LELYYQ   73 (73)
Q Consensus        68 i~L~~~   73 (73)
                      |||.|.
T Consensus        82 vyL~y~   87 (94)
T d1wf9a1          82 VYLAYE   87 (94)
T ss_dssp             EECCCS
T ss_pred             EEEEee
Confidence            999884

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=3.1e-07  Score=52.34  Aligned_cols=68  Identities=13%  Similarity=0.112  Sum_probs=64.9

Q ss_pred             EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181           4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~   71 (73)
                      |.|=+++|+..+|.|.|+.|+.++-+....++|.++++-.|.|++++|.=...+.-.|+.+|..+.|+
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv   70 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMV   70 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEE
Confidence            56778999999999999999999999999999999999999999999999999999999999999986

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.1e-05  Score=42.79  Aligned_cols=70  Identities=10%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE--cceEec---CCccccccCCCCCCEEEEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK--WYTIFK---DHIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif--~Gk~L~---D~~tL~~y~I~~g~ti~L~   71 (73)
                      +.+|-||.++|+.+.-...+++||.+|.+-+.. .|.+++.-.|+-  -.+.|.   +..||++.|+.+..+|++.
T Consensus         5 ~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~-~~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           5 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHH-HTCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHh-cCCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            357899999999999999999999999999987 477788888864  666773   3679999999999999875

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=9.2e-05  Score=42.04  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=53.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCCCccEEEEEc--ceEecC-CccccccCCCCCCE
Q psy4181           3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ-TGTRWEKIVLKKW--YTIFKD-HIRIMDYEIHDGMN   67 (73)
Q Consensus         3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~-~gip~~~QrLif~--Gk~L~D-~~tL~~y~I~~g~t   67 (73)
                      .|-||.++|+.+...+.+++||.+|.+-+... .+.+...-.|+.+  -|.|.| +.||+++|+.+...
T Consensus        16 ~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s~v   84 (89)
T d1i42a_          16 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI   84 (89)
T ss_dssp             EEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCSEE
T ss_pred             EEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCceE
Confidence            57789999999999999999999999999876 4677777888765  567854 78999999996543

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=0.00016  Score=41.22  Aligned_cols=69  Identities=12%  Similarity=0.056  Sum_probs=56.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc--eEec-C-CccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY--TIFK-D-HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G--k~L~-D-~~tL~~y~I~~g~ti~L~   71 (73)
                      ++|-||.++|+.+.-...+++||.+|.+-++.. +.....-+|+...  +.+. | ..||+++|+.+..+|++.
T Consensus        17 ~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~   89 (96)
T d2cr5a1          17 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE   89 (96)
T ss_dssp             EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEe
Confidence            678999999999999999999999999988665 4556667776543  5564 3 679999999999999875

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00065  Score=40.52  Aligned_cols=69  Identities=13%  Similarity=0.107  Sum_probs=56.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE--cceEec--C-CccccccCCCCCCEEEEE
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK--WYTIFK--D-HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif--~Gk~L~--D-~~tL~~y~I~~g~ti~L~   71 (73)
                      -+|-||.++|+.+.-.+.+++||.+|.+-+... +.+...-+|+.  --+.|.  | ..||++.|+.+..+|++.
T Consensus        44 ~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEE
Confidence            368899999999999999999999999999776 45666777754  455674  3 679999999999998874

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.81  E-value=0.052  Score=29.44  Aligned_cols=65  Identities=12%  Similarity=0.120  Sum_probs=45.7

Q ss_pred             EEEEEEcC------CC-CEEEEEeCCCCcHHHHHHHHHHHhCCC-----------CccEEEEEcceEecCCccccccCCC
Q psy4181           2 IEITCNDR------LG-KKVRVKCNPDDTIGDLKKLIAAQTGTR-----------WEKIVLKKWYTIFKDHIRIMDYEIH   63 (73)
Q Consensus         2 ~~i~vk~~------~G-~~~~v~v~~~~TV~~lK~~I~~~~gip-----------~~~QrLif~Gk~L~D~~tL~~y~I~   63 (73)
                      |+|.||..      +| ....+++.+..||.+|.+.+.++.+--           ...-++.-+|+.-.+     ++-++
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-----d~~L~   76 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK   76 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-----CcCcC
Confidence            77887765      34 578899999999999999999875321           122344457766644     35589


Q ss_pred             CCCEEEEE
Q psy4181          64 DGMNLELY   71 (73)
Q Consensus        64 ~g~ti~L~   71 (73)
                      +|+.|-+.
T Consensus        77 ~gDevai~   84 (88)
T d1vjka_          77 DGDVVGVF   84 (88)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEe
Confidence            99988763

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.14  Score=28.14  Aligned_cols=71  Identities=13%  Similarity=0.093  Sum_probs=54.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEE---cce--EecCCccccccCCCCCCEEEEEeC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKK---WYT--IFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif---~Gk--~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      |+|.|..++| ++.+.++++++-.+|=+++.+..|+.-.. -=|-|   .|.  .|+.+..|..+.++.+....|.|+
T Consensus         2 ~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l~F~   78 (84)
T d1ef1a3           2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR   78 (84)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred             EEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEEEEE
Confidence            7899999998 58999999999999999999999987322 23333   222  467778888887777777777664

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.024  Score=32.16  Aligned_cols=54  Identities=9%  Similarity=0.059  Sum_probs=41.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-----cc--eEecCCccc
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-----WY--TIFKDHIRI   57 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-----~G--k~L~D~~tL   57 (73)
                      +.||.  .+|.+.++.|++++|+.+|=+++.++.+++.+.---+|     .|  |.|+|++.+
T Consensus        12 vkv~~--~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~~f~L~E~~~~~~leR~L~d~E~v   72 (100)
T d1wgra_          12 VKVYS--EDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESV   72 (100)
T ss_dssp             EEEEE--TTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCH
T ss_pred             EEEEe--cCCCEEEEEECCCCcHHHHHHHHHHHhCCCCCCCeEEEEecCCCcceeecCchHhH
Confidence            55665  56999999999999999999999999998765532233     23  778887643

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.35  E-value=0.18  Score=27.67  Aligned_cols=42  Identities=17%  Similarity=0.096  Sum_probs=33.6

Q ss_pred             EEEEcC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc
Q psy4181           4 ITCNDR-LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW   47 (73)
Q Consensus         4 i~vk~~-~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~   47 (73)
                      |.||.. .+..+.+.+.|+.|..+|+++|+++.+++  .-+|-|.
T Consensus        13 ikVKv~~~~D~~~~~l~~~it~~dL~~kI~~rf~~~--~~~lkY~   55 (85)
T d1ip9a_          13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTK   55 (85)
T ss_dssp             EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEEC
T ss_pred             EEEEEEECCcEEEEEeCCCCCHHHHHHHHHHHhCCC--ceEEEEE
Confidence            445555 67889999999999999999999999865  4566553

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.23  Score=27.08  Aligned_cols=38  Identities=8%  Similarity=-0.108  Sum_probs=35.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC
Q psy4181           2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW   39 (73)
Q Consensus         2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~   39 (73)
                      |+..|..++|..+.+.|+++++-.+|=+++.+..|+.-
T Consensus         1 ~~C~V~lLD~~~~~~~v~~~~~G~~l~~~Vc~~l~l~E   38 (81)
T d1gg3a3           1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE   38 (81)
T ss_dssp             CEEEEECTTSCEEEEECCTTCCHHHHHHHHHHHHTTCS
T ss_pred             CEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCcc
Confidence            57789999999999999999999999999999999974

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.44  Score=26.00  Aligned_cols=71  Identities=14%  Similarity=0.132  Sum_probs=54.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccE--EEEE--cce--EecCCccccccCCCCCCEEEEEeC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKI--VLKK--WYT--IFKDHIRIMDYEIHDGMNLELYYQ   73 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Q--rLif--~Gk--~L~D~~tL~~y~I~~g~ti~L~~~   73 (73)
                      +|.|.|..++| ++.+.|+++++-.+|=.++.+..|+.- ..  =|-|  .|.  .|+.+..|..+.++.+..+++.|+
T Consensus         2 ~~~v~V~lLD~-~le~~v~~~a~G~~L~d~Vc~~L~L~E-~~YFGL~y~~~~~~~WLd~~k~l~kq~~~~~~~~~~~F~   78 (84)
T d1h4ra3           2 TFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRE-TWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL   78 (84)
T ss_dssp             EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC-GGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred             eEEEEEEEcCC-cEEEEEcCCChHHHHHHHHHHHcCCcc-cccceEEEecCCceEEccCCCchhhhccCCCCCEEEEEE
Confidence            47889999998 479999999999999999999999853 32  2222  332  456678888888888888877764

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.21  Score=27.80  Aligned_cols=37  Identities=16%  Similarity=0.215  Sum_probs=34.8

Q ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc
Q psy4181          11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW   47 (73)
Q Consensus        11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~   47 (73)
                      --++.+.+.+.....+|.++|+++.+.|++.-.|-|.
T Consensus        13 ~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_          13 KYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             SSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             EEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            3689999999999999999999999999999999995

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.87  E-value=0.35  Score=26.95  Aligned_cols=67  Identities=16%  Similarity=0.096  Sum_probs=41.7

Q ss_pred             EEEEEEcCCC--------CEEEEEeCC---CCcHHHHHHHHHHHhCCCCcc-----------EEEEEcceEecCCcccc-
Q psy4181           2 IEITCNDRLG--------KKVRVKCNP---DDTIGDLKKLIAAQTGTRWEK-----------IVLKKWYTIFKDHIRIM-   58 (73)
Q Consensus         2 ~~i~vk~~~G--------~~~~v~v~~---~~TV~~lK~~I~~~~gip~~~-----------QrLif~Gk~L~D~~tL~-   58 (73)
                      |.|.|+...|        +...++++.   ..||++|-+.++++.+-+...           -....+|+-.+   -+. 
T Consensus         5 m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~---~l~g   81 (101)
T d1xo3a_           5 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LLGE   81 (101)
T ss_dssp             CEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHH---HHTT
T ss_pred             eEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcchhhhhccCcCeeeeEEEEEcCccee---ccCC
Confidence            6677877431        444565543   479999999999987654332           12223444322   222 


Q ss_pred             -ccCCCCCCEEEEE
Q psy4181          59 -DYEIHDGMNLELY   71 (73)
Q Consensus        59 -~y~I~~g~ti~L~   71 (73)
                       ++.+++|+.|.+.
T Consensus        82 l~t~l~dgDeV~~~   95 (101)
T d1xo3a_          82 LDYQLQDQDSILFI   95 (101)
T ss_dssp             TSCCCCTTCEEEEE
T ss_pred             CccCcCCCCEEEEe
Confidence             5789999999874

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.29  Score=27.70  Aligned_cols=57  Identities=7%  Similarity=0.208  Sum_probs=40.3

Q ss_pred             EEEeCCCCcHHHHHHHHHHHhCCCCcc----------EEEEEcceE--ecC------CccccccCCCCCCEEEEE
Q psy4181          15 RVKCNPDDTIGDLKKLIAAQTGTRWEK----------IVLKKWYTI--FKD------HIRIMDYEIHDGMNLELY   71 (73)
Q Consensus        15 ~v~v~~~~TV~~lK~~I~~~~gip~~~----------QrLif~Gk~--L~D------~~tL~~y~I~~g~ti~L~   71 (73)
                      .++++|+.|..+|-+.+.++-......          ++=.|--.+  |+.      ..+|.+.|+++|+.|++.
T Consensus         4 ~l~~~~~~TL~~li~~L~e~p~~qlk~Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLgl~dG~ei~Vt   78 (92)
T d1y8xb1           4 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA   78 (92)
T ss_dssp             CEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred             eEEcCCCCcHHHHHHHHhhChHhhccCCceeeecCCCccEEEecCcHHHHHHhhhccccCHHHhCCcCCCEEEEe
Confidence            478899999999999999985444333          222232222  432      478999999999999864

>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.7  Score=25.07  Aligned_cols=38  Identities=11%  Similarity=-0.023  Sum_probs=35.3

Q ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE
Q psy4181           9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK   46 (73)
Q Consensus         9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif   46 (73)
                      ++|....+.|.|..||.++=.++.++-|++++.-.++-
T Consensus         9 Pngq~T~V~vrpG~tird~L~k~l~kRgl~~~~c~V~~   46 (77)
T d1c1yb_           9 PNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFR   46 (77)
T ss_dssp             TTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred             CCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            78999999999999999999999999999999988853

>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=89.63  E-value=0.25  Score=27.11  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=40.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccE----------EEEEcceEecCCccccccCCCCCCEE
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKI----------VLKKWYTIFKDHIRIMDYEIHDGMNL   68 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Q----------rLif~Gk~L~D~~tL~~y~I~~g~ti   68 (73)
                      ||++.++ .+|+...++++|+.|..++=   .++.|..--.-          ..+.+|++..-..++. ..+.+|..|
T Consensus         1 M~~~~~~-lNG~~~~~~v~~~~~Lld~L---R~~lgltg~K~gC~~G~CGACtVlvdG~~v~SCl~~~-~~~adG~~I   73 (80)
T d1vlba2           1 MIQKVIT-VNGIEQNLFVDAEALLSDVL---RQQLGLTGVKVGCEQGQCGACSVILDGKVVRACVTKM-KRVADGAQI   73 (80)
T ss_dssp             CEEEEEE-ETTEEEEEEECTTSBHHHHH---HHTTCCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBG-GGSCTTCEE
T ss_pred             CceEEEE-ECCEEEEEecCCCCCHHHHH---hHhhCCcccccCcCcCCCCeeEEEECCcEEechhhhH-HHHcCCCEE
Confidence            8998886 69999999999999998763   34444433222          4556787766554421 123355544

>d2incc1 d.15.12.1 (C:3-85) Toluene, o-xylene monooxygenase oxygenase subunit TouB {Pseudomonas stutzeri [TaxId: 316]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TmoB-like
family: TmoB-like
domain: Toluene, o-xylene monooxygenase oxygenase subunit TouB
species: Pseudomonas stutzeri [TaxId: 316]

Probab=89.16  E-value=1  Score=24.90  Aligned_cols=59  Identities=20%  Similarity=0.291  Sum_probs=47.0

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHh-CCC----CccE-EEEE--cceEecCCccccccCCCCCCEEEEEe
Q psy4181          14 VRVKCNPDDTIGDLKKLIAAQT-GTR----WEKI-VLKK--WYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus        14 ~~v~v~~~~TV~~lK~~I~~~~-gip----~~~Q-rLif--~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      .-+.|+.+||+.++-++++-.. |--    |+.- |.-.  +|..|-.+.|+++-||++-.+|...|
T Consensus        15 qLVaVDt~dtmdqVA~k~A~HsVGRRv~p~P~~~~rvr~~~~ge~~pr~~tv~~~gi~P~e~iev~f   81 (83)
T d2incc1          15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF   81 (83)
T ss_dssp             EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred             EEEEEcCCCcHHHHHHHHHHHhhccccCCCCCCccEEEEcCCCcCCCCCCChhhcCCCCceEEEEEE
Confidence            3468899999999999998773 432    2333 3333  79999999999999999999999877

>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Quinoline 2-oxidoreductase small subunit QorS, N-domain
species: Pseudomonas putida [TaxId: 303]

Probab=88.96  E-value=0.3  Score=26.77  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=23.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHH
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLK   28 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK   28 (73)
                      ||+|.+. ++|+.+.++++|+.|+.++=
T Consensus         3 ~~~i~~~-vNG~~~~~~~~~~~~Ll~~L   29 (81)
T d1t3qa2           3 LMRISAT-INGKPRVFYVEPRMHLADAL   29 (81)
T ss_dssp             CEEEEEE-ETTEEEEEEECTTSBHHHHH
T ss_pred             eEEEEEE-ECCEEEEEecCCCCCHHHHH
Confidence            7888887 59999999999999998764

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.58  E-value=1  Score=24.16  Aligned_cols=39  Identities=10%  Similarity=-0.029  Sum_probs=35.8

Q ss_pred             cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE
Q psy4181           8 DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK   46 (73)
Q Consensus         8 ~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif   46 (73)
                      -++|....+.|.|..||.++=+++.++-|++++.-.++-
T Consensus         7 LPngq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~   45 (73)
T d1wxma1           7 LPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR   45 (73)
T ss_dssp             CSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred             cCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            478999999999999999999999999999999988753

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.65  E-value=0.39  Score=26.87  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=27.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW   39 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~   39 (73)
                      +|.|++.+.+|+..++++.+..|+.++    +.+.|++.
T Consensus         2 ~i~i~~i~~dG~~~~i~~~~G~tLl~~----~~~~gi~i   36 (104)
T d2bt6a1           2 KITVHFINRDGETLTTKGKIGDSLLDV----VVQNNLDI   36 (104)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHH----HHHTTCCC
T ss_pred             eEEEEEECCCCCEEEEEeCCCchHHHH----HHHcCCCc
Confidence            478999999999999999999999875    22356653

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

Probab=87.08  E-value=0.56  Score=25.80  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=28.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc
Q psy4181           1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK   41 (73)
Q Consensus         1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~   41 (73)
                      |..|.+.+.+|+.+.+++.+..|+.+.=    ++.||++..
T Consensus         4 ~~tvt~i~~dG~~~~~~~~~g~slLdaa----~~~Gi~i~~   40 (98)
T d1jq4a_           4 VHTITAVTEDGESLRFECRSDEDVITAA----LRQNIFLMS   40 (98)
T ss_dssp             EEEEEEEETTTEEEEEEEESCCTHHHHH----HHHTCCCCC
T ss_pred             eEEEEEEEcCCCEEEEEeCCCchHHHHH----HHcCCCeEE
Confidence            4578888999999999999999998752    335555443

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}

class: All alpha proteins
fold: RuBisCo LSMT C-terminal, substrate-binding domain
superfamily: RuBisCo LSMT C-terminal, substrate-binding domain
family: RuBisCo LSMT C-terminal, substrate-binding domain
domain: RuBisCo LSMT C-terminal, substrate-binding domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.20  E-value=0.35  Score=29.83  Aligned_cols=40  Identities=13%  Similarity=0.015  Sum_probs=35.4

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEe
Q psy4181          12 KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF   51 (73)
Q Consensus        12 ~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L   51 (73)
                      -++++.++++|.--+.|.++.+..|+++.+.-.++.|+.+
T Consensus         2 y~l~l~i~~sDpl~~~K~~lLe~~Gl~~~~~F~l~~~~~~   41 (176)
T d2h2ja1           2 YTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTL   41 (176)
T ss_dssp             EEEEEECCTTSTTHHHHHHHHHTTTCCSEEEEEEETTSCC
T ss_pred             eeEEEecCCCCcCHHHHHHHHHHcCCCCCCceEeecCCCC
Confidence            3678999999999999999999999999988778887654

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Escherichia coli [TaxId: 562]

Probab=86.07  E-value=1.3  Score=22.73  Aligned_cols=56  Identities=16%  Similarity=0.207  Sum_probs=41.9

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      +|+..  ++++..|+.+|=+.    .|+++..--.-.+|+.+. ...-.++-+++|+.|.++.
T Consensus         5 Ng~~~--~~~~~~tl~~ll~~----l~~~~~~vaV~vN~~ivp-k~~~~~~~L~~gD~ieIv~   60 (65)
T d1zud21           5 NDQAM--QCAAGQTVHELLEQ----LDQRQAGAALAINQQIVP-REQWAQHIVQDGDQILLFQ   60 (65)
T ss_dssp             TTEEE--CCCTTCBHHHHHHH----HTCCCTTEEEEETTEECC-GGGTTTCBCCTTCEEEEEE
T ss_pred             CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCEEcC-HHHHhhccCCCCCEEEEEE
Confidence            56554  55677899988654    789998888888998874 3334557799999998763

>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Uncharacterised protein TTHA0675
species: Thermus thermophilus [TaxId: 274]

Probab=81.62  E-value=2.1  Score=21.77  Aligned_cols=55  Identities=15%  Similarity=0.204  Sum_probs=39.8

Q ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181          10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY   72 (73)
Q Consensus        10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~   72 (73)
                      +|+...  ++ +.|+.+|=+    ..|+++..--.=.+|..+. .....++-+++|+.|.++.
T Consensus         5 NGe~~~--~~-~~tl~~LL~----~l~~~~~~vAV~vN~~ivp-r~~~~~~~l~~gD~iEIv~   59 (63)
T d2cu3a1           5 NGEPRP--LE-GKTLKEVLE----EMGVELKGVAVLLNEEAFL-GLEVPDRPLRDGDVVEVVA   59 (63)
T ss_dssp             TTEEEC--CT-TCCHHHHHH----HHTBCGGGEEEEETTEEEE-GGGCCCCCCCTTCEEEEEE
T ss_pred             CCEEEE--cC-CCCHHHHHH----HcCCCCCcEEEEECCEEcC-HHHcCcccCCCCCEEEEEE
Confidence            787655  43 568776654    4688888888888999883 2334567899999998763