Psyllid ID: psy4243

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MLHLVCQDLIWVCLVLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Secondary Structure (PSIPRED)
ccccccccHHHHcccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccEEEcHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccEEEEEEEEccccccEccEEEcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccEcccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLHLVCQDLIWVCLVLGLCNILTIKAHLAsikvpipisdkEARFKCMKWHIEiakdkpsevrfsDNLAQILIDGadnkgkvvkkktdlHRQCEANRAYAHYYFG
Flexible Loop (DISEMBL)
MLHLVCQDLIWVCLVLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIeiakdkpsevrfSDNLAQILidgadnkgkvvkkktdlhrqceanrayahyyfg
Low Complexity Region (SEG)
MLHLVCQDLIWVCLVLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Disordered region (IsUnstruct)
**HLVCQDLIWVCLVLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF*
Disordered Region (DISOPRED)
*****CQ*LIWVCLVLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAK*******F**NLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Disordered Region (DISEMBL)
MLHLVCQDLIWVCLVLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Disordered Region (DISPRO)
MLHLVCQDLIWVCLVLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDK****R*SDNL*QILIDGADNKGKVVKKKTDLHRQCE*NR****Y**G
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLHLVCQDLIWVCLVLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q9VKX4	218	28S ribosomal protein S7,	yes	N/A	0.836	0.399	0.425	7e-16
Q3T040	242	28S ribosomal protein S7,	yes	N/A	0.807	0.347	0.409	1e-11
Q5I0K8	242	28S ribosomal protein S7,	yes	N/A	0.807	0.347	0.397	2e-11
Q80X85	242	28S ribosomal protein S7,	yes	N/A	0.807	0.347	0.397	2e-11
Q498Z6	228	28S ribosomal protein S7,	yes	N/A	0.807	0.368	0.409	3e-11
Q95Q11	222	28S ribosomal protein S7,	yes	N/A	0.701	0.328	0.426	4e-11
Q60R52	222	28S ribosomal protein S7,	N/A	N/A	0.701	0.328	0.426	1e-10
Q9Y2R9	242	28S ribosomal protein S7,	yes	N/A	0.673	0.289	0.422	3e-10
Q5ZMU0	233	28S ribosomal protein S7,	yes	N/A	0.807	0.360	0.386	3e-10
Q2N9A6	156	30S ribosomal protein S7	yes	N/A	0.692	0.461	0.383	4e-10

>sp|Q9VKX4|RT07_DROME 28S ribosomal protein S7, mitochondrial OS=Drosophila melanogaster GN=mRpS7 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%)

Query: 18  LCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADN 77
           L  +  IK    + +VP+PI+ K + F  MKW +E A++K  +V   + LA  ++D A  
Sbjct: 132 LLQVTAIKRGGVTYQVPVPITTKRSYFLAMKWLLEAAREKERKVSLPEKLAWEILDAAHG 191

Query: 78  KGKVVKKKTDLHRQCEANRAYAHYYFG 104
           +G+V+K+K DLHR CE+NRAYAHY + 
Sbjct: 192 QGRVIKRKDDLHRLCESNRAYAHYRWS 218

Drosophila melanogaster (taxid: 7227)

>sp|Q3T040|RT07_BOVIN 28S ribosomal protein S7, mitochondrial OS=Bos taurus GN=MRPS7 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 15  VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 73
           V+GL  IL    H    +VP+P++++  RF  MKW I E  + KP  +   + L+Q L++
Sbjct: 155 VIGLVPILK-GGHF--YQVPVPLAERRRRFLAMKWMITECREKKPRRMLMPEKLSQELLE 211

Query: 74  GADNKGKVVKKKTDLHRQCEANRAYAHY 101
              N+G V+K+K D+H+  EANRA AHY
Sbjct: 212 AFCNRGPVIKRKHDMHKMAEANRALAHY 239

Bos taurus (taxid: 9913)

>sp|Q5I0K8|RT07_RAT 28S ribosomal protein S7, mitochondrial OS=Rattus norvegicus GN=Mrps7 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 15  VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 73
           V+GL  IL    H    +VP+P++D+  RF  MKW I E  ++KP  +   + L+  L++
Sbjct: 155 VIGLVPILK-GGHF--YQVPVPLADRRRRFLAMKWMITECRENKPRRMLMPEKLSHELLE 211

Query: 74  GADNKGKVVKKKTDLHRQCEANRAYAHY 101
              N+G V+K+K ++H+  EANRA AHY
Sbjct: 212 AFHNRGPVIKRKHNMHKMAEANRALAHY 239

Rattus norvegicus (taxid: 10116)

>sp|Q80X85|RT07_MOUSE 28S ribosomal protein S7, mitochondrial OS=Mus musculus GN=Mrps7 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 15  VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 73
           V+GL  IL    H    +VP+P++D+  RF  MKW I E  ++KP      + L+  L++
Sbjct: 155 VIGLVPILK-GGHF--YQVPVPLADRRRRFLAMKWMITECRENKPRRTLMPEKLSHELLE 211

Query: 74  GADNKGKVVKKKTDLHRQCEANRAYAHY 101
              N+G V+K+K ++H+  EANRA AHY
Sbjct: 212 AFHNRGPVIKRKHNMHKMAEANRALAHY 239

Mus musculus (taxid: 10090)

>sp|Q498Z6|RT07_DANRE 28S ribosomal protein S7, mitochondrial OS=Danio rerio GN=mrps7 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 15  VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 73
           V+GL    +I+      +VP+P++D   RF  MKW I E   +K       + L+Q L+ 
Sbjct: 141 VIGLA---SIQKGGKFYQVPVPLTDNRRRFMAMKWMITECRTNKQGRTLMYEKLSQELLA 197

Query: 74  GADNKGKVVKKKTDLHRQCEANRAYAHY 101
              N+G V+K+K DLH+  EANRAYAHY
Sbjct: 198 AFANEGNVIKRKHDLHKMAEANRAYAHY 225

Danio rerio (taxid: 7955)

>sp|Q95Q11|RT07_CAEEL 28S ribosomal protein S7, mitochondrial OS=Caenorhabditis elegans GN=Y57G11C.34 PE=3 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 29  ASIKVPIPISDKEARFKCMKWHIEI--AKDKPSEVRFSDNLAQILIDGADNKGKVVKKKT 86
            + +VP PI + EA F+ MK   +I   + K  E  F D LA  L+  + N+G  ++ K 
Sbjct: 146 TTYQVPFPIEEPEAEFRAMKMMRDICRVRSKHGETHFKDILATELLAASQNEGSTIQAKQ 205

Query: 87  DLHRQCEANRAYAHY 101
           +LH+ CEANRAYAHY
Sbjct: 206 ELHKTCEANRAYAHY 220

Caenorhabditis elegans (taxid: 6239)

>sp|Q60R52|RT07_CAEBR 28S ribosomal protein S7, mitochondrial OS=Caenorhabditis briggsae GN=CBG21526 PE=3 SV=2

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 29  ASIKVPIPISDKEARFKCMKWHIEI--AKDKPSEVRFSDNLAQILIDGADNKGKVVKKKT 86
            + +VP PI + EA F+ MK   +I   + K  E  F D LA  L+  + N+G  +  K 
Sbjct: 146 TTYQVPFPIEEPEAEFRAMKMMRDICRVRAKHGETHFKDILATELLAASQNEGSTITAKQ 205

Query: 87  DLHRQCEANRAYAHY 101
           +LH+ CEANRAYAHY
Sbjct: 206 ELHKTCEANRAYAHY 220

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9Y2R9|RT07_HUMAN 28S ribosomal protein S7, mitochondrial OS=Homo sapiens GN=MRPS7 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 32  KVPIPISDKEARFKCMKWHIEIAKDKPSE-VRFSDNLAQILIDGADNKGKVVKKKTDLHR 90
           +VP+P+ D+  RF  MKW I   +DK  +     + L+  L++   N+G V+K+K DLH+
Sbjct: 169 QVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRKHDLHK 228

Query: 91  QCEANRAYAHY 101
             EANRA AHY
Sbjct: 229 MAEANRALAHY 239

Homo sapiens (taxid: 9606)

>sp|Q5ZMU0|RT07_CHICK 28S ribosomal protein S7, mitochondrial OS=Gallus gallus GN=MRPS7 PE=2 SV=2

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 15  VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 73
           ++GL NI        + +VP+P+ D   RF  MKW I E  ++K       + L++ LI 
Sbjct: 146 IIGLSNITRGGK---TYQVPVPLKDNRKRFLAMKWLITECRENKHRRTLMPEKLSEELIQ 202

Query: 74  GADNKGKVVKKKTDLHRQCEANRAYAHY 101
             +N+G ++KKK  LH+  EANRAYAH+
Sbjct: 203 AFNNEGPIIKKKHVLHKMAEANRAYAHF 230

Gallus gallus (taxid: 9031)

>sp|Q2N9A6|RS7_ERYLH 30S ribosomal protein S7 OS=Erythrobacter litoralis (strain HTCC2594) GN=rpsG PE=3 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +  + A+   ++W I  A+ +P E   +  L+  L+D A+N+G  VKK+ D 
Sbjct: 83  ATYQVPVEVRPERAQALAIRWMISAARGRP-ETTMAARLSGELMDAANNRGNAVKKREDA 141

Query: 89  HRQCEANRAYAHY 101
           HR  EANRA++HY
Sbjct: 142 HRMAEANRAFSHY 154

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
91089173	232	PREDICTED: similar to AGAP009613-PA [Tri	0.807	0.362	0.535	8e-18
340722099	227	PREDICTED: 28S ribosomal protein S7, mit	0.692	0.317	0.569	8e-17
340722101	216	PREDICTED: 28S ribosomal protein S7, mit	0.692	0.333	0.569	8e-17
346465901	257	hypothetical protein [Amblyomma maculatu	0.75	0.303	0.525	2e-16
240848991	231	mitochondrial ribosomal protein S7-like	0.807	0.363	0.464	2e-16
321477831	233	hypothetical protein DAPPUDRAFT_206542 [	0.836	0.373	0.482	4e-16
383861755	223	PREDICTED: 28S ribosomal protein S7, mit	0.673	0.313	0.542	6e-16
442761091	232	Putative ribosomal protein s7, partial [	0.692	0.310	0.527	9e-16
241617520	233	ribosomal protein S7, putative [Ixodes s	0.692	0.309	0.527	1e-15
332375662	233	unknown [Dendroctonus ponderosae]	0.865	0.386	0.439	1e-15

>gi|91089173|ref|XP_974109.1| PREDICTED: similar to AGAP009613-PA [Tribolium castaneum] gi|270012454|gb|EFA08902.1| hypothetical protein TcasGA2_TC006605 [Tribolium castaneum]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 58/84 (69%)

Query: 18  LCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADN 77
           + N+  IK      +VP+PI+ K ++F  MKW I  +K+K   VRF   LA  LID A+N
Sbjct: 146 IMNLTPIKRGGVRYQVPVPITPKRSQFMSMKWLIAASKEKDKNVRFHYQLALELIDAANN 205

Query: 78  KGKVVKKKTDLHRQCEANRAYAHY 101
           KG+VVK+K DLH+QCEANRAYAHY
Sbjct: 206 KGRVVKRKQDLHKQCEANRAYAHY 229

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722099|ref|XP_003399447.1| PREDICTED: 28S ribosomal protein S7, mitochondrial-like isoform 1 [Bombus terrestris]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 56/72 (77%)

Query: 30  SIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLH 89
           S +VP+P+++  ARF  M W I+ A+DK +  +F D LA+ +ID A+NKG+V+KKK DLH
Sbjct: 153 SYQVPVPMNENRARFLSMNWLIKCAQDKGNAEKFPDVLAKEIIDAANNKGRVIKKKHDLH 212

Query: 90  RQCEANRAYAHY 101
           +QCEANRAYAHY
Sbjct: 213 KQCEANRAYAHY 224

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722101|ref|XP_003399448.1| PREDICTED: 28S ribosomal protein S7, mitochondrial-like isoform 2 [Bombus terrestris]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 56/72 (77%)

Query: 30  SIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLH 89
           S +VP+P+++  ARF  M W I+ A+DK +  +F D LA+ +ID A+NKG+V+KKK DLH
Sbjct: 142 SYQVPVPMNENRARFLSMNWLIKCAQDKGNAEKFPDVLAKEIIDAANNKGRVIKKKHDLH 201

Query: 90  RQCEANRAYAHY 101
           +QCEANRAYAHY
Sbjct: 202 KQCEANRAYAHY 213

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346465901|gb|AEO32795.1| hypothetical protein [Amblyomma maculatum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 55/78 (70%)

Query: 24  IKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVK 83
           IK    + +VP+PI+   +RF  MKW I+   DK  +VRF D LA+ L+D   N+G+VVK
Sbjct: 177 IKRGGITYQVPVPITQNRSRFLSMKWMIDAVNDKDQKVRFYDQLAKELLDAYKNQGRVVK 236

Query: 84  KKTDLHRQCEANRAYAHY 101
           KK +LH+QCEAN+AYAHY
Sbjct: 237 KKHELHKQCEANKAYAHY 254

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848991|ref|NP_001155408.1| mitochondrial ribosomal protein S7-like [Acyrthosiphon pisum] gi|239790805|dbj|BAH71939.1| ACYPI000999 [Acyrthosiphon pisum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 57/84 (67%)

Query: 18  LCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADN 77
           L  +  +K   +  +VP+PI+DKE+ F  M+W ++  ++K   + F+D +A  LI  ++N
Sbjct: 145 LLKLTAVKRGGSFYQVPVPITDKESTFYAMRWFVQCGREKDKSISFADFMATELIKASNN 204

Query: 78  KGKVVKKKTDLHRQCEANRAYAHY 101
            GKVV KK DLH+QCEANRAYAHY
Sbjct: 205 DGKVVNKKLDLHKQCEANRAYAHY 228

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321477831|gb|EFX88789.1| hypothetical protein DAPPUDRAFT_206542 [Daphnia pulex]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 58/87 (66%)

Query: 18  LCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADN 77
           +  +  IK   ++ +VPIPI++  ARF  MKW I   ++K  ++ F + LA  LID  +N
Sbjct: 147 VLQLTPIKRGGSTYQVPIPITENRARFLAMKWMILECREKERKIHFPERLAFELIDAFNN 206

Query: 78  KGKVVKKKTDLHRQCEANRAYAHYYFG 104
            GKVVK+K DLH+QCE NRAYAHY +G
Sbjct: 207 TGKVVKRKQDLHKQCENNRAYAHYRWG 233

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861755|ref|XP_003706350.1| PREDICTED: 28S ribosomal protein S7, mitochondrial-like [Megachile rotundata]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 54/70 (77%)

Query: 32  KVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQ 91
           KVPIP++++ A+F  M W I+ A DKP   +F D LA+ LI+ ++N+GK +KKK +LH+Q
Sbjct: 151 KVPIPLNEQRAKFLSMNWLIQTANDKPDTDKFVDVLAKELINASNNEGKTIKKKHELHKQ 210

Query: 92  CEANRAYAHY 101
           CEANRA+AHY
Sbjct: 211 CEANRAFAHY 220

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442761091|gb|JAA72704.1| Putative ribosomal protein s7, partial [Ixodes ricinus]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 54/72 (75%)

Query: 30  SIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLH 89
           + +VPIP++   ARF  MKW ++ A DK  +V F D LA+ ++D  +N+G+VVKKK +LH
Sbjct: 158 TYQVPIPMTPNRARFLSMKWMLDAANDKDQKVPFEDQLAKEIMDAFNNQGRVVKKKHELH 217

Query: 90  RQCEANRAYAHY 101
           +QCEAN+AYAHY
Sbjct: 218 KQCEANKAYAHY 229

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241617520|ref|XP_002406933.1| ribosomal protein S7, putative [Ixodes scapularis] gi|215500903|gb|EEC10397.1| ribosomal protein S7, putative [Ixodes scapularis]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 53/72 (73%)

Query: 30  SIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLH 89
           + +VPIP++   ARF  MKW ++ A DK   V F D LA+ ++D  +N+G+VVKKK +LH
Sbjct: 159 TYQVPIPMTPNRARFLSMKWMLDAANDKDQRVPFEDQLAKEIMDAFNNQGRVVKKKHELH 218

Query: 90  RQCEANRAYAHY 101
           +QCEAN+AYAHY
Sbjct: 219 KQCEANKAYAHY 230

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375662|gb|AEE62972.1| unknown [Dendroctonus ponderosae]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 12  VCLVLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSE-VRFSDNLAQI 70
           V   + L  ++ +K      +VP+P+S   +RF  MKW IE +++K  + VRF   LA+ 
Sbjct: 140 VTNSMPLLQLMPVKRGGVKYQVPVPVSHHRSRFLGMKWLIEASREKDKKTVRFWTQLARE 199

Query: 71  LIDGADNKGKVVKKKTDLHRQCEANRAYAHY 101
           L+D ++N G+V+++K DLHRQCEAN+AYAHY
Sbjct: 200 LVDASNNSGRVIRRKQDLHRQCEANKAYAHY 230

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
FB|FBgn0032236	218	mRpS7 "mitochondrial ribosomal	0.807	0.385	0.440	3.7e-16
UNIPROTKB|Q3T040	242	MRPS7 "28S ribosomal protein S	0.807	0.347	0.409	7.1e-13
UNIPROTKB|F1RVX4	242	MRPS7 "Uncharacterized protein	0.807	0.347	0.420	9.1e-13
RGD|1309164	242	Mrps7 "mitochondrial ribosomal	0.807	0.347	0.397	1.2e-12
MGI|MGI:1354367	242	Mrps7 "mitchondrial ribosomal	0.807	0.347	0.397	1.5e-12
ZFIN|ZDB-GENE-050809-112	228	mrps7 "mitochondrial ribosomal	0.673	0.307	0.450	1.9e-12
UNIPROTKB|E2RFN7	242	MRPS7 "Uncharacterized protein	0.807	0.347	0.397	3.1e-12
WB|WBGene00013324	222	mrps-7 [Caenorhabditis elegans	0.673	0.315	0.444	5e-12
UNIPROTKB|Q95Q11	222	Y57G11C.34 "28S ribosomal prot	0.673	0.315	0.444	5e-12
UNIPROTKB|Q5ZMU0	233	MRPS7 "28S ribosomal protein S	0.807	0.360	0.397	1e-11

FB|FBgn0032236 mRpS7 "mitochondrial ribosomal protein S7" [Drosophila melanogaster (taxid:7227)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 37/84 (44%), Positives = 55/84 (65%)

Query:    18 LCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADN 77
             L  +  IK    + +VP+PI+ K + F  MKW +E A++K  +V   + LA  ++D A  
Sbjct:   132 LLQVTAIKRGGVTYQVPVPITTKRSYFLAMKWLLEAAREKERKVSLPEKLAWEILDAAHG 191

Query:    78 KGKVVKKKTDLHRQCEANRAYAHY 101
             +G+V+K+K DLHR CE+NRAYAHY
Sbjct:   192 QGRVIKRKDDLHRLCESNRAYAHY 215

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|Q3T040 MRPS7 "28S ribosomal protein S7, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 36/88 (40%), Positives = 54/88 (61%)

Query:    15 VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 73
             V+GL  IL    H    +VP+P++++  RF  MKW I E  + KP  +   + L+Q L++
Sbjct:   155 VIGLVPILK-GGHF--YQVPVPLAERRRRFLAMKWMITECREKKPRRMLMPEKLSQELLE 211

Query:    74 GADNKGKVVKKKTDLHRQCEANRAYAHY 101
                N+G V+K+K D+H+  EANRA AHY
Sbjct:   212 AFCNRGPVIKRKHDMHKMAEANRALAHY 239

GO:0006412 "translation" evidence=IDA

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1RVX4 MRPS7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 37/88 (42%), Positives = 53/88 (60%)

Query:    15 VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 73
             V+GL  IL    H    +VP+P++D+  RF  MKW I E  + K   V   + L+Q L++
Sbjct:   155 VIGLVPILK-GGHF--YQVPVPLADRRRRFLAMKWMIAECREKKHRRVLMPEKLSQELLE 211

Query:    74 GADNKGKVVKKKTDLHRQCEANRAYAHY 101
                N+G V+K+K D+H+  EANRA AHY
Sbjct:   212 AFHNQGPVIKRKHDMHKMAEANRALAHY 239

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1309164 Mrps7 "mitochondrial ribosomal protein S7" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 35/88 (39%), Positives = 54/88 (61%)

Query:    15 VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 73
             V+GL  IL    H    +VP+P++D+  RF  MKW I E  ++KP  +   + L+  L++
Sbjct:   155 VIGLVPILK-GGHF--YQVPVPLADRRRRFLAMKWMITECRENKPRRMLMPEKLSHELLE 211

Query:    74 GADNKGKVVKKKTDLHRQCEANRAYAHY 101
                N+G V+K+K ++H+  EANRA AHY
Sbjct:   212 AFHNRGPVIKRKHNMHKMAEANRALAHY 239

GO:0003723 "RNA binding" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

MGI|MGI:1354367 Mrps7 "mitchondrial ribosomal protein S7" [Mus musculus (taxid:10090)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 35/88 (39%), Positives = 53/88 (60%)

Query:    15 VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 73
             V+GL  IL    H    +VP+P++D+  RF  MKW I E  ++KP      + L+  L++
Sbjct:   155 VIGLVPILK-GGHF--YQVPVPLADRRRRFLAMKWMITECRENKPRRTLMPEKLSHELLE 211

Query:    74 GADNKGKVVKKKTDLHRQCEANRAYAHY 101
                N+G V+K+K ++H+  EANRA AHY
Sbjct:   212 AFHNRGPVIKRKHNMHKMAEANRALAHY 239

GO:0003735 "structural constituent of ribosome" evidence=ISA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

ZFIN|ZDB-GENE-050809-112 mrps7 "mitochondrial ribosomal protein S7" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 32/71 (45%), Positives = 44/71 (61%)

Query:    32 KVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHR 90
             +VP+P++D   RF  MKW I E   +K       + L+Q L+    N+G V+K+K DLH+
Sbjct:   155 QVPVPLTDNRRRFMAMKWMITECRTNKQGRTLMYEKLSQELLAAFANEGNVIKRKHDLHK 214

Query:    91 QCEANRAYAHY 101
               EANRAYAHY
Sbjct:   215 MAEANRAYAHY 225

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RFN7 MRPS7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 35/88 (39%), Positives = 53/88 (60%)

Query:    15 VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSE-VRFSDNLAQILID 73
             V+GL  IL    H    +VP+P++D+  RF  MKW I+  ++K    +   + L+  L++
Sbjct:   155 VIGLVPILR-GGHF--YQVPVPLADRRRRFLAMKWMIKECREKKHRRMLMPEKLSHELLE 211

Query:    74 GADNKGKVVKKKTDLHRQCEANRAYAHY 101
                N+G V+KKK D+H+  EANRA AHY
Sbjct:   212 AFHNQGPVIKKKHDMHKMAEANRALAHY 239

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

WB|WBGene00013324 mrps-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 32/72 (44%), Positives = 44/72 (61%)

Query:    32 KVPIPISDKEARFKCMKWHIEIAK--DKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLH 89
             +VP PI + EA F+ MK   +I +   K  E  F D LA  L+  + N+G  ++ K +LH
Sbjct:   149 QVPFPIEEPEAEFRAMKMMRDICRVRSKHGETHFKDILATELLAASQNEGSTIQAKQELH 208

Query:    90 RQCEANRAYAHY 101
             + CEANRAYAHY
Sbjct:   209 KTCEANRAYAHY 220

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q95Q11 Y57G11C.34 "28S ribosomal protein S7, mitochondrial" [Caenorhabditis elegans (taxid:6239)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 32/72 (44%), Positives = 44/72 (61%)

Query:    32 KVPIPISDKEARFKCMKWHIEIAK--DKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLH 89
             +VP PI + EA F+ MK   +I +   K  E  F D LA  L+  + N+G  ++ K +LH
Sbjct:   149 QVPFPIEEPEAEFRAMKMMRDICRVRSKHGETHFKDILATELLAASQNEGSTIQAKQELH 208

Query:    90 RQCEANRAYAHY 101
             + CEANRAYAHY
Sbjct:   209 KTCEANRAYAHY 220

GO:0003723 "RNA binding" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|Q5ZMU0 MRPS7 "28S ribosomal protein S7, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 35/88 (39%), Positives = 52/88 (59%)

Query:    15 VLGLCNILTIKAHLASIKVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 73
             ++GL NI T      + +VP+P+ D   RF  MKW I E  ++K       + L++ LI 
Sbjct:   146 IIGLSNI-TRGGK--TYQVPVPLKDNRKRFLAMKWLITECRENKHRRTLMPEKLSEELIQ 202

Query:    74 GADNKGKVVKKKTDLHRQCEANRAYAHY 101
               +N+G ++KKK  LH+  EANRAYAH+
Sbjct:   203 AFNNEGPIIKKKHVLHKMAEANRAYAHF 230

GO:0005739 "mitochondrion" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	104
PRK05302	156	PRK05302, PRK05302, 30S ribosomal protein S7; Vali	6e-14
pfam00177	149	pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e	1e-12
TIGR01029	154	TIGR01029, rpsG_bact, ribosomal protein S7, bacter	9e-12
CHL00053	155	CHL00053, rps7, ribosomal protein S7	1e-10
COG0049	148	COG0049, RpsG, Ribosomal protein S7 [Translation,	2e-08

>gnl|CDD|235398 PRK05302, PRK05302, 30S ribosomal protein S7; Validated

 Score = 62.8 bits (154), Expect = 6e-14
 Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +  +  +   M+W +E A+ +  E   ++ LA  L+D A+N+G  VKK+ D 
Sbjct: 83  ATYQVPVEVRPERRQALAMRWLVEAARKR-GEKTMAERLANELLDAANNRGAAVKKREDT 141

Query: 89  HRQCEANRAYAHYYF 103
           HR  EAN+A+AHY +
Sbjct: 142 HRMAEANKAFAHYRW 156

Length = 156

>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e

 Score = 59.5 bits (145), Expect = 1e-12
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +S +      ++W +E A+ + S    ++ LA  LID A+NKG  +KKK + 
Sbjct: 83  ATYQVPVEVSPERRVALAIRWILEAARKR-SGKSMAEKLANELIDAANNKGSAIKKKEET 141

Query: 89  HRQCEANR 96
           H+  EANR
Sbjct: 142 HKMAEANR 149

This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Length = 149

>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle

 Score = 57.3 bits (139), Expect = 9e-12
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +         ++W IE A  K      ++ LA  ++D A+N G  +KK+ D 
Sbjct: 81  ATYQVPVEVRPSRRYALAIRWLIEAA-RKRGGKSMAERLANEILDAANNTGAAIKKREDT 139

Query: 89  HRQCEANRAYAHY 101
           HR  EAN+A+AHY
Sbjct: 140 HRMAEANKAFAHY 152

This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 154

>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 33  VPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQC 92
           VPI I     +   ++W ++ ++ +      +  L+  L+D A   G  ++KK + HR  
Sbjct: 87  VPIEIGSTRGKALAIRWLLKASRKRSGR-NMAFKLSSELVDAAKGSGNAIRKKEETHRMA 145

Query: 93  EANRAYAHY 101
           EANRA+AH+
Sbjct: 146 EANRAFAHF 154

Length = 155

>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +  +      ++W +E A+ + +E   ++ LA  LID A+N G  +KKK D 
Sbjct: 82  ATYQVPVEVRPRRRVALALRWIVEGARKR-NEKTMAERLANELIDAANNTGAAIKKKEDT 140

Query: 89  HRQCEANR 96
           HR  EANR
Sbjct: 141 HRMAEANR 148

Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
TIGR01029	154	rpsG_bact ribosomal protein S7, bacterial/organell	100.0
PRK05302	156	30S ribosomal protein S7; Validated	100.0
CHL00053	155	rps7 ribosomal protein S7	100.0
COG0049	148	RpsG Ribosomal protein S7 [Translation, ribosomal	100.0
PRK04027	195	30S ribosomal protein S7P; Reviewed	100.0
TIGR01028	186	S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukary	100.0
PTZ00091	193	40S ribosomal protein S5; Provisional	100.0
KOG3291|consensus	208		100.0
PF00177	148	Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro:	99.97

>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle

Probab=100.00  E-value=7e-41  Score=240.25  Aligned_cols=101  Identities=27%  Similarity=0.454  Sum_probs=96.0

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      |+..++.+|+++|.+||+|++|.      ++||++||||++|++.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus        48 i~~~~~~nPi~vl~~Ai~nv~P~~evk~~r~gG~~yqvP~~v~~~rr~~lAirWil~~a~~r~-~~~~~~~La~Eii~A~  126 (154)
T TIGR01029        48 IAKKTGEDPLEVFEQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAIRWLIEAARKRG-GKSMAERLANEILDAA  126 (154)
T ss_pred             HHHHcCCCHHHHHHHHHHhCCCCeeeEEeecCCEEEEEeeEcCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            45567888999999999999996      7899999999999999999999999999999876 6899999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhhhhccccc
Q psy4243          76 DNKGKVVKKKTDLHRQCEANRAYAHYYF  103 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNRa~ahyrw  103 (104)
                      +++|.+++||||+||||++||||+||||
T Consensus       127 ~~~g~aikkKee~hk~AeaNRaf~h~Rw  154 (154)
T TIGR01029       127 NNTGAAIKKREDTHRMAEANKAFAHYRW  154 (154)
T ss_pred             hCCCceeeHHHHHHHHHHHhHhHhcccC
Confidence            9999999999999999999999999998

This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028.

>PRK05302 30S ribosomal protein S7; Validated

Probab=100.00  E-value=3.6e-40  Score=236.99  Aligned_cols=101  Identities=30%  Similarity=0.493  Sum_probs=95.9

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      ||..++.+|+++|.+||+|++|+      ++||++||||+||++.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus        50 I~~~~~~npl~il~~Ai~nv~P~~evk~~r~gG~~~~vP~~i~~~rr~~lAirwil~~a~~r~-~~~~~~~La~Eii~A~  128 (156)
T PRK05302         50 IEEKTGKDPLEVFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRG-EKTMAERLANELLDAA  128 (156)
T ss_pred             HHHHcCCChHHHHHHHHHhCCCCeEEeeeccCCEEEEEeEEeCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            45567788899999999999996      7899999999999999999999999999999876 5899999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhhhhccccc
Q psy4243          76 DNKGKVVKKKTDLHRQCEANRAYAHYYF  103 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNRa~ahyrw  103 (104)
                      +++|.+++||+|+||+|++||||+||||
T Consensus       129 ~~~g~aikkK~e~hk~A~aNRa~ah~R~  156 (156)
T PRK05302        129 NNRGAAVKKREDTHRMAEANKAFAHYRW  156 (156)
T ss_pred             hCCCCeeehHHHHHHHHHHhhhHhhcCC
Confidence            9999999999999999999999999998

>CHL00053 rps7 ribosomal protein S7

Probab=100.00  E-value=9.3e-39  Score=229.37  Aligned_cols=100  Identities=23%  Similarity=0.421  Sum_probs=95.3

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      ||..++.+|+++|.+||+|++|.      ++||++||||+||+|.||+++||+||+++|++++ +.+|+++||+||++|+
T Consensus        50 i~~~~~~npi~vl~~Ai~N~~P~~evk~~r~gG~~~qvPv~v~~~rr~~lAirWil~~ar~r~-~~~~~~~La~Eii~A~  128 (155)
T CHL00053         50 IQQKTEKNPLSVLRQAIRNVTPDVEVKARRVGGSTYQVPIEIGSTRGKALAIRWLLKASRKRS-GRNMAFKLSSELVDAA  128 (155)
T ss_pred             HHHHcCCCHHHHHHHHHHhCCCcEEEEEEeeCCEEEEEeeEcCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            56678888999999999999996      8899999999999999999999999999999876 5799999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhhhhcccc
Q psy4243          76 DNKGKVVKKKTDLHRQCEANRAYAHYY  102 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNRa~ahyr  102 (104)
                      +|+|.+++||+|+||+|++||||+|||
T Consensus       129 ~~~g~aikkK~e~hk~A~aNRa~~h~r  155 (155)
T CHL00053        129 KGSGNAIRKKEETHRMAEANRAFAHFR  155 (155)
T ss_pred             hCCCchhhhHHHHHHHHHHhHhHhccC
Confidence            999999999999999999999999997

>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.5e-36  Score=214.22  Aligned_cols=94  Identities=28%  Similarity=0.404  Sum_probs=89.5

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      |+--|+.+|++||++||+|++|.      ++||.+|||||+|+|.||+++||+||+++|+++. +++|++|||+|||||+
T Consensus        49 i~~kTg~~Piqvf~~Ai~N~~P~~Ev~srrvGGa~yqvpVeV~p~RR~~lAlrwi~~~Ar~r~-~ktm~erLA~Eli~Aa  127 (148)
T COG0049          49 IEKKTGQNPLQVFEKAIENVKPREEVKSRRVGGATYQVPVEVRPRRRVALALRWIVEGARKRN-EKTMAERLANELIDAA  127 (148)
T ss_pred             HHHHHCCChHHHHHHHHHhcCchhheeeeeeCCeeeEecCccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            45568899999999999999997      8899999999999999999999999999999874 7999999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhh
Q psy4243          76 DNKGKVVKKKTDLHRQCEANR   96 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNR   96 (104)
                      +|.|.|||||||+||||++||
T Consensus       128 n~~g~AikKked~hRmAeAnr  148 (148)
T COG0049         128 NNTGAAIKKKEDTHRMAEANR  148 (148)
T ss_pred             cCCcchhhhHHHHHHHHHhcC
Confidence            999999999999999999997

>PRK04027 30S ribosomal protein S7P; Reviewed

Probab=100.00  E-value=3e-35  Score=217.85  Aligned_cols=95  Identities=20%  Similarity=0.193  Sum_probs=90.2

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHH
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQILID   73 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k--~~~~~~~~~La~Eii~   73 (104)
                      ||+.|+.+|+++|++||+|++|.      ++||++||||++|+|.||+++|||||+++|+++  +++++|++|||+||+|
T Consensus        91 I~~kT~~nPiqVl~~AI~N~~P~~Ev~~~r~GG~tyqvpVdV~p~Rr~~lAirwI~~~ar~r~fr~~ksm~e~LA~Elid  170 (195)
T PRK04027         91 IEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEEALAEEIIA  170 (195)
T ss_pred             HHHHHCCCHHHHHHHHHHcCCCCeEEEEEecCCEEEEeeeecCHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence            78889999999999999999996      789999999999999999999999999999985  3579999999999999


Q ss_pred             HhcC--CChhHHhHHHHHHHHHHhh
Q psy4243          74 GADN--KGKVVKKKTDLHRQCEANR   96 (104)
Q Consensus        74 A~~~--~g~aikkK~elhK~A~aNR   96 (104)
                      |+++  +|.|++||||+||||++||
T Consensus       171 Aa~~~~~g~AikKKeE~hRmAeANr  195 (195)
T PRK04027        171 AANNDPKSYAVRKKEEIERVAKSAR  195 (195)
T ss_pred             HHcCCCCCceeecHHHHHHHHHhcC
Confidence            9999  5889999999999999998

>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic)

Probab=100.00  E-value=8.7e-35  Score=214.23  Aligned_cols=94  Identities=17%  Similarity=0.104  Sum_probs=88.5

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHH
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKD---KPSEVRFSDNLAQILI   72 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~---k~~~~~~~~~La~Eii   72 (104)
                      ||..|+.+|+++|++||+|++|.      ++||++||||+||+|.||+++|||||+++|++   |+ +++|+++||+||+
T Consensus        82 I~~~t~~nPi~vl~~AI~N~~P~~ev~~~r~GG~~yqVPv~v~p~Rr~~lAirWI~~~ar~~~~R~-~k~m~~~LA~Eii  160 (186)
T TIGR01028        82 IEKRTGENPIQVLVDAIENAGPREDTTRIGYGGIVYRQAVDISPLRRVDQALRNIALGAREAAFRN-KKSIAECLAEEII  160 (186)
T ss_pred             HHHHhCCChHHHHHHHHHcCCCCeEEEEEecCCEEEEeccccCHHHHHHHHHHHHHHHHHHhcccC-CCcHHHHHHHHHH
Confidence            67788999999999999999996      88999999999999999999999999999997   44 6899999999999


Q ss_pred             HHhcCC--ChhHHhHHHHHHHHHHhh
Q psy4243          73 DGADNK--GKVVKKKTDLHRQCEANR   96 (104)
Q Consensus        73 ~A~~~~--g~aikkK~elhK~A~aNR   96 (104)
                      ||++|+  |.|++||||+||||++||
T Consensus       161 ~A~~~~g~g~AikKKeE~hr~AeaNR  186 (186)
T TIGR01028       161 LAANGDSKSYAIKKKEELERVAKSAR  186 (186)
T ss_pred             HHHhCCCCCceeehHHHHHHHHHhcC
Confidence            999998  469999999999999997

This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7.

>PTZ00091 40S ribosomal protein S5; Provisional

Probab=100.00  E-value=9.6e-35  Score=214.77  Aligned_cols=95  Identities=18%  Similarity=0.176  Sum_probs=89.4

Q ss_pred             CccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHH
Q psy4243           1 MLHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKD---KPSEVRFSDNLAQIL   71 (104)
Q Consensus         1 ~~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~---k~~~~~~~~~La~Ei   71 (104)
                      +||+.|+.+|++||++||+|++|.      ++||++||||++|+|.||+++|||||+++|++   |+ +++|++|||+||
T Consensus        88 iI~~~t~~nPiqVl~~AI~N~~P~~e~~ri~~GG~~yqvpVdVsp~Rr~~lAirwI~~~ar~~~fR~-~ks~~e~LA~El  166 (193)
T PTZ00091         88 IIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRN-IKTIAECLADEI  166 (193)
T ss_pred             HHHHHHCCChHHHHHHHHHhCCCCeeeEEeecCCeEEEEeeecChHHHHHHHHHHHHHHHHhhcccC-CCCHHHHHHHHH
Confidence            378899999999999999999997      66899999999999999999999999999998   55 699999999999


Q ss_pred             HHHhcCC--ChhHHhHHHHHHHHHHhh
Q psy4243          72 IDGADNK--GKVVKKKTDLHRQCEANR   96 (104)
Q Consensus        72 i~A~~~~--g~aikkK~elhK~A~aNR   96 (104)
                      |||++|+  |.|++||||+||||++||
T Consensus       167 i~Aa~~~~~s~AikKKeE~hR~AeANR  193 (193)
T PTZ00091        167 INASKESSNSYAIKKKDEVERVAKANR  193 (193)
T ss_pred             HHHHhCCCCCcceehHHHHHHHHHhcC
Confidence            9999999  559999999999999998

>KOG3291|consensus

Probab=100.00  E-value=2e-33  Score=209.19  Aligned_cols=95  Identities=27%  Similarity=0.389  Sum_probs=90.7

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHH
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFSDNLAQILID   73 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~--~~~~~~~~La~Eii~   73 (104)
                      ||++|++||++||++||.|+.|.      .+||++|||||||+|.||+++||+||+++|++++  +.++|++|||+|||+
T Consensus       106 I~~~t~~NPiqvl~~AI~n~~P~~~~~~i~r~g~~~~vpv~v~~~rr~~~Ai~wi~~~ar~~~~~~~~~~ae~La~ELi~  185 (208)
T KOG3291|consen  106 IKRLTERNPIQVLVQAIENCGPLEDVTRIGRAGTTYQVPVPVSPLRRVNLAIKWILTGARERSFRNIKTLAECLADELIA  185 (208)
T ss_pred             HHHHhcCCHHHHHHHHHHhcCchhhceeecccceEEEecccCCcHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence            78999999999999999999997      5689999999999999999999999999999974  358999999999999


Q ss_pred             HhcCCChhHHhHHHHHHHHHHhh
Q psy4243          74 GADNKGKVVKKKTDLHRQCEANR   96 (104)
Q Consensus        74 A~~~~g~aikkK~elhK~A~aNR   96 (104)
                      |++|+|+|++||||+||+|++||
T Consensus       186 Aakgs~~aikKKdeLhr~a~sNR  208 (208)
T KOG3291|consen  186 AAKGSGNAIKKKDELHRMAEANR  208 (208)
T ss_pred             HHhCCchhhhhHHHHHHHHhccC
Confidence            99999999999999999999998

>PF00177 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: IPR023798 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=7.1e-32  Score=191.87  Aligned_cols=94  Identities=35%  Similarity=0.538  Sum_probs=87.4

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      |+..++.+|+++|.+||+|++|.      ++||++||||++|+++||+++||+||++++++++ +++|+++||+||+||+
T Consensus        49 i~~~~~~npi~il~~Ai~n~~P~~~v~~~k~gg~~~~vP~~i~~~r~~~lAikWi~~~~~~r~-~~~~~~~La~Eii~a~  127 (148)
T PF00177_consen   49 IKKKTNKNPIQILKQAIENVKPLVEVRSIKKGGKTYQVPVPISPKRRIFLAIKWILEAARKRK-EKSFSERLANEIIDAS  127 (148)
T ss_dssp             HHHHHSSSHHHHHHHHHHHHS-SEEEEEEEETTEEEEEEEEETHHHHHHHHHHHHHHHHHTSS-SSSHHHHHHHHHHHHH
T ss_pred             hhcccCCCHHHHHHHHHHHhccceeeeeeccCceeEEEEEeecHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence            45566778889999999999997      7899999999999999999999999999999766 6899999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhh
Q psy4243          76 DNKGKVVKKKTDLHRQCEANR   96 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNR   96 (104)
                      +++|.++++|+|+||+|++||
T Consensus       128 ~~~g~aikkK~~lhk~A~~NR  148 (148)
T PF00177_consen  128 NNKGSAIKKKEELHKMAEANR  148 (148)
T ss_dssp             TTSSHHHHHHHHHHHHHHHTG
T ss_pred             cCCcHHHHHHHHHHHHHHhcC
Confidence            999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S7 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S7 is known to bind directly to part of the 3'end of 16S ribosomal RNA. It belongs to a family of ribosomal proteins which have been grouped on the basis of sequence similarities [, , ]. This entry represents the S7 structural domain, which consists of a bundle of six helices and an extended beta hairpin between helices 3 and 4, with two or more RNA-binding sites on its surface [].; PDB: 3IZ6_F 3V28_G 2WRN_G 2HHH_G 2V46_G 3KNL_G 2UUC_G 2Y16_G 2Y0W_G 2J02_G ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
1rss_A	151	Ribosomal Protein S7 From Thermus Thermophilus Leng		5e-11
1fjg_G	156	Structure Of The Thermus Thermophilus 30s Ribosomal		5e-11
1i94_G	155	Crystal Structures Of The Small Ribosomal Subunit W		6e-11
1x18_F	154	Contact Sites Of Era Gtpase On The Thermus Thermoph		2e-10
2gy9_G	137	Structure Of The 30s Subunit Of A Pre-Translocation		3e-09
1vs5_G	179	Crystal Structure Of The Bacterial Ribosome From Es		4e-09
1p6g_G	178	Real Space Refined Coordinates Of The 30s Subunit F		4e-09
3sfs_G	156	Crystal Structure Of Release Factor Rf3 Trapped In		4e-09
1fka_G	151	Structure Of Functionally Activated Small Ribosomal		1e-08
3gty_S	149	Promiscuous Substrate Recognition In Folding And As		1e-08
3bbn_G	155	Homology Model For The Spinach Chloroplast 30s Subu		4e-08
3fih_G	150	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		3e-07
3ofo_G	151	Crystal Structure Of The E. Coli Ribosome Bound To		3e-07
1hus_A	155	Ribosomal Protein S7 Length = 155		7e-07
1eg0_D	146	Fitting Of Components With Known Structure Into An		1e-05
1qd7_F	135	Partial Model For 30s Ribosomal Subunit Length = 13		2e-05

>pdb|1RSS|A Chain A, Ribosomal Protein S7 From Thermus Thermophilus Length = 151

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +S +  +   ++W ++ A  +P E R +  +A  L+D A+ KG  VKKK D+
Sbjct: 78  ANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAAEGKGGAVKKKEDV 136
Query: 89  HRQCEANRAYAHY 101
            R  EANRAYAHY
Sbjct: 137 ERMAEANRAYAHY 149

>pdb|1FJG|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 156

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +S +  +   ++W ++ A  +P E R +  +A  L+D A+ KG  VKKK D+
Sbjct: 83  ANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAAEGKGGAVKKKEDV 141
Query: 89  HRQCEANRAYAHY 101
            R  EANRAYAHY
Sbjct: 142 ERMAEANRAYAHY 154

>pdb|1I94|G Chain G, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 155

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +S +  +   ++W ++ A  +P E R +  +A  L+D A+ KG  VKKK D+
Sbjct: 82  ANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAAEGKGGAVKKKEDV 140
Query: 89  HRQCEANRAYAHY 101
            R  EANRAYAHY
Sbjct: 141 ERMAEANRAYAHY 153

>pdb|1X18|F Chain F, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 154

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +S ++     ++W ++ A  +P E R +  +A  L+D A+ KG  VKKK D+
Sbjct: 82  ANYQVPMEVSRRQQSL-ALRWLVQAANQRP-ERRAAVRIAHELMDAAEGKGGAVKKKEDV 139
Query: 89  HRQCEANRAYAHY 101
            R  EANRAYAHY
Sbjct: 140 ERMAEANRAYAHY 152

>pdb|2GY9|G Chain G, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 137

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFSDNLAQILIDGADNKGKVVKKK 85
           ++ +VP+ +         M+W +E A+   DK   +R ++ L+    D A+NKG  VKK+
Sbjct: 64  STYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELS----DAAENKGTAVKKR 119
Query: 86  TDLHRQCEANRAYAHY 101
            D+HR  EAN+A+AHY
Sbjct: 120 EDVHRMAEANKAFAHY 135

>pdb|1VS5|G Chain G, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 179

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFSDNLAQILIDGADNKGKVVKKK 85
           ++ +VP+ +         M+W +E A+   DK   +R ++ L+    D A+NKG  VKK+
Sbjct: 83  STYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELS----DAAENKGTAVKKR 138
Query: 86  TDLHRQCEANRAYAHY 101
            D+HR  EAN+A+AHY
Sbjct: 139 EDVHRMAEANKAFAHY 154

>pdb|1P6G|G Chain G, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFSDNLAQILIDGADNKGKVVKKK 85
           ++ +VP+ +         M+W +E A+   DK   +R ++ L+    D A+NKG  VKK+
Sbjct: 82  STYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELS----DAAENKGTAVKKR 137
Query: 86  TDLHRQCEANRAYAHY 101
            D+HR  EAN+A+AHY
Sbjct: 138 EDVHRMAEANKAFAHY 153

>pdb|3SFS|G Chain G, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome Length = 156

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFSDNLAQILIDGADNKGKVVKKK 85
           ++ +VP+ +         M+W +E A+   DK   +R ++ L+    D A+NKG  VKK+
Sbjct: 83  STYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELS----DAAENKGTAVKKR 138
Query: 86  TDLHRQCEANRAYAHY 101
            D+HR  EAN+A+AHY
Sbjct: 139 EDVHRMAEANKAFAHY 154

>pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 151

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +S +  +   ++W ++ A  +P E R +  +A  L+D A+ KG  VKKK D+
Sbjct: 83  ANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAAEGKGGAVKKKEDV 141
Query: 89  HRQCEANRAY 98
            R  EANRAY
Sbjct: 142 ERMAEANRAY 151

>pdb|3GTY|S Chain S, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 149

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VPI + +       ++W +E A+ K       + LA+ +I   +N G  +KKK D 
Sbjct: 76  ATYQVPIEVQEPRRTSLALRWIVEAARAKKGRP-MKEKLAEEIIAAYNNTGTAIKKKEDT 134
Query: 89  HRQCEANRAYAHYYF 103
           HR  EANRA+AHY +
Sbjct: 135 HRMAEANRAFAHYRW 149

>pdb|3BBN|G Chain G, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 155

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 15  VLGLCNILTIKAHL---ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQIL 71
           + G+   + +KA     ++ +VPI I   + +   ++W +  A+ +P     +  L+  L
Sbjct: 66  IRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGR-NMAFKLSSEL 124
Query: 72  IDGADNKGKVVKKKTDLHRQCEANRAYAHY 101
           +D A   G  V+KK + HR  EANRA+AH+
Sbjct: 125 VDAAKGSGDAVRKKEETHRMAEANRAFAHF 154

>pdb|3FIH|G Chain G, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 150

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFSDNLAQILIDGADNKGKVVKKK 85
           ++ +VP+ +         M+W +E A+   DK   +R ++ L+    D A+NKG  VKK+
Sbjct: 81  STYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELS----DAAENKGTAVKKR 136
Query: 86  TDLHRQCEANRAYA 99
            D+HR  EAN+A+A
Sbjct: 137 EDVHRMAEANKAFA 150

>pdb|3OFO|G Chain G, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 30s Subunit Of The First 70s Ribosome. Length = 151

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFSDNLAQILIDGADNKGKVVKKK 85
           ++ +VP+ +         M+W +E A+   DK   +R ++ L+    D A+NKG  VKK+
Sbjct: 82  STYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELS----DAAENKGTAVKKR 137
Query: 86  TDLHRQCEANRAYA 99
            D+HR  EAN+A+A
Sbjct: 138 EDVHRMAEANKAFA 151

>pdb|1HUS|A Chain A, Ribosomal Protein S7 Length = 155

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 21  ILTIKAHL---ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADN 77
           +L ++A     A+ +VP+ +         ++W ++ A+ + +E    + LA  + D A+N
Sbjct: 71  VLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLR-NEKTXEERLANEIXDAANN 129
Query: 78  KGKVVKKKTDLHRQCEANRAYAHY 101
            G  VKK+ D H+  EAN+A+AHY
Sbjct: 130 TGAAVKKREDTHKXAEANKAFAHY 153

>pdb|1QD7|F Chain F, Partial Model For 30s Ribosomal Subunit Length = 135

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +S +  +   ++W ++ A  +P E R +  +A  L+D A+ KG  VKKK D+
Sbjct: 72  ANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAAEGKGGAVKKKEDV 130
Query: 89  HRQCE 93
            R  E
Sbjct: 131 ERMAE 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
3gty_S	149	TF, 30S ribosomal protein S7; chaperone-client com	3e-14
1hus_A	155	Ribosomal protein S7; RNA-binding protein, decodin	3e-14
1rss_A	151	Ribosomal protein S7; RNA-binding, translation; 1.	4e-14
3i1m_G	179	30S ribosomal protein S7; ribosome structure, prot	4e-14
3bbn_G	155	Ribosomal protein S7; small ribosomal subunit, spi	4e-14
3r8n_G	151	30S ribosomal protein S7; protein biosynthesis, RN	2e-11
2zkq_g	204	40S ribosomal protein S5E; protein-RNA complex, 40	6e-06
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	3e-05
2xzm_G	200	Ribosomal protein S7 containing protein; ribosome,	6e-05
1iqv_A	218	Ribosomal protein S7; RNA-binding, decoding center	9e-05

>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} Length = 149

 Score = 63.3 bits (155), Expect = 3e-14
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 33  VPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQC 92
           VPI + +       ++W +E A+ K       + LA+ +I   +N G  +KKK D HR  
Sbjct: 80  VPIEVQEPRRTSLALRWIVEAARAK-KGRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMA 138

Query: 93  EANRAYAHYYF 103
           EANRA+AHY +
Sbjct: 139 EANRAFAHYRW 149

>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1 Length = 155

 Score = 63.3 bits (155), Expect = 3e-14
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 33  VPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQC 92
           VP+ +         ++W ++ A+ + +E    + LA  ++D A+N G  VKK+ D H+  
Sbjct: 86  VPVEVRPDRRVSLGLRWLVQYARLR-NEKTMEERLANEIMDAANNTGAAVKKREDTHKMA 144

Query: 93  EANRAYAHYYF 103
           EAN+A+AHY +
Sbjct: 145 EANKAFAHYRW 155

>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ... Length = 151

 Score = 62.9 bits (154), Expect = 4e-14
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 33  VPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQC 92
           VP+ +S +  +   ++W ++ A  +  E R +  +A  L+D A+ KG  VKKK D+ R  
Sbjct: 82  VPMEVSPRRQQSLALRWLVQAANQR-PERRAAVRIAHELMDAAEGKGGAVKKKEDVERMA 140

Query: 93  EANRAYAHYYF 103
           EANRAYAHY +
Sbjct: 141 EANRAYAHYRW 151

>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G ... Length = 179

 Score = 63.4 bits (155), Expect = 4e-14
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 33  VPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQC 92
           VP+ +         M+W +E A+ +  +   +  LA  L D A+NKG  VKK+ D+HR  
Sbjct: 87  VPVEVRPVRRNALAMRWIVEAARKR-GDKSMALRLANELSDAAENKGTAVKKREDVHRMA 145

Query: 93  EANRAYAHYYF 103
           EAN+A+AHY +
Sbjct: 146 EANKAFAHYRW 156

>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 155

 Score = 62.6 bits (153), Expect = 4e-14
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 33  VPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQC 92
           VPI I   + +   ++W +  A+ K      +  L+  L+D A   G  V+KK + HR  
Sbjct: 87  VPIEIGSTQGKALAIRWLLGAAR-KRPGRNMAFKLSSELVDAAKGSGDAVRKKEETHRMA 145

Query: 93  EANRAYAHY 101
           EANRA+AH+
Sbjct: 146 EANRAFAHF 154

>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris} Length = 204

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 33  VPIPISDKEARFKCMKWHIEIAKDKP--SEVRFSDNLAQILIDGADNKGKV--VKKKTDL 88
             + +S      + +      A++    +    ++ LA  LI+ A        +KKK +L
Sbjct: 137 QAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEL 196

Query: 89  HRQCEANR 96
            R  ++NR
Sbjct: 197 ERVAKSNR 204

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 47  MKWHIEIAKDKP--SEVRFSDNLAQILIDGADNKGKV--VKKKTDLHRQCEANR 96
           +      A++    +    ++ LA+ LI+ A        +KKK +L R  ++NR
Sbjct: 172 IALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225

>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T Length = 200

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 47  MKWHIEIAKDKP--SEVRFSDNLAQILIDGADNKGKV---VKKKTDLHRQCEANR 96
           + + I+  ++    S    ++ LA  +I+   N  +    ++KK ++ +  + NR
Sbjct: 146 IYFIIKGCRESAFKSMRSIAETLADEIINAEKNNTQSSWAIRKKDEIEKVAKGNR 200

>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Length = 218

 Score = 38.6 bits (90), Expect = 9e-05
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 47  MKWHIEIAKDKP--SEVRFSDNLAQILIDGADN--KGKVVKKKTDLHRQCEANR 96
           ++     A  K   +++ F++ LA+ +I  A+   K     KK ++ R  E++R
Sbjct: 165 LRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
3gty_S	149	TF, 30S ribosomal protein S7; chaperone-client com	100.0
3i1m_G	179	30S ribosomal protein S7; ribosome structure, prot	100.0
1rss_A	151	Ribosomal protein S7; RNA-binding, translation; 1.	100.0
1hus_A	155	Ribosomal protein S7; RNA-binding protein, decodin	100.0
3bbn_G	155	Ribosomal protein S7; small ribosomal subunit, spi	100.0
3r8n_G	151	30S ribosomal protein S7; protein biosynthesis, RN	100.0
2xzm_G	200	Ribosomal protein S7 containing protein; ribosome,	100.0
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	100.0
1iqv_A	218	Ribosomal protein S7; RNA-binding, decoding center	100.0
2zkq_g	204	40S ribosomal protein S5E; protein-RNA complex, 40	99.96

>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}

Probab=100.00  E-value=4.3e-44  Score=254.96  Aligned_cols=101  Identities=28%  Similarity=0.448  Sum_probs=97.1

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      ||..|+.+|+++|.+||+|++|.      ++||++||||++|+|.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus        43 I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~~yqvPv~v~~~rr~~lAirWi~~~ar~r~-~k~m~~~LA~Eli~A~  121 (149)
T 3gty_S           43 IREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKK-GRPMKEKLAEEIIAAY  121 (149)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEEEECCTHHHHHHHHHHHHHHHHTCS-SSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHhCCCCeEEEEEeeCCEEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            56778999999999999999997      7899999999999999999999999999999876 6899999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhhhhccccc
Q psy4243          76 DNKGKVVKKKTDLHRQCEANRAYAHYYF  103 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNRa~ahyrw  103 (104)
                      +|+|.+++||||+||||++||||+||||
T Consensus       122 ~~~g~aikKKee~hkmAeaNRAfahyRw  149 (149)
T 3gty_S          122 NNTGTAIKKKEDTHRMAEANRAFAHYRW  149 (149)
T ss_dssp             TTCSHHHHHHHHHHHHHTTSGGGCTTCC
T ss_pred             hCCchhhhHHHHHHHHHHHhHhHhhcCC
Confidence            9999999999999999999999999998

>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...

Probab=100.00  E-value=1.7e-44  Score=263.49  Aligned_cols=102  Identities=29%  Similarity=0.444  Sum_probs=93.0

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      ||..|+.+|+++|++||+|++|.      ++||++||||++|+|.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus        50 I~~kt~~nPl~vl~~AI~Nv~P~veVks~rvGG~tyqVPv~V~p~Rr~~lAirWii~~arkR~-~k~m~erLA~ELidAa  128 (179)
T 3i1m_G           50 LAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRG-DKSMALRLANELSDAA  128 (179)
T ss_dssp             HHHHHCSCSHHHHHHHHHHHCCSEEEECCCCSSSCCCEEEECCTTHHHHHHHHHHHHHHTTCC-SSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHhCCCCeEEEEEeeCCEEEEEccccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            56778899999999999999997      8899999999999999999999999999999876 6999999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhhhhcccccC
Q psy4243          76 DNKGKVVKKKTDLHRQCEANRAYAHYYFG  104 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNRa~ahyrw~  104 (104)
                      +|+|.+++||||+||||++||||+|||||
T Consensus       129 ~~~G~AikKKee~HkmAeANRAfaHyRw~  157 (179)
T 3i1m_G          129 ENKGTAVKKREDVHRMAEANKAFAHYRWL  157 (179)
T ss_dssp             TSCSHHHHHHHHHHHHTTTGGGGC-----
T ss_pred             hCcchhhhHHHHHHHHHHHhHhHHhhccc
Confidence            99999999999999999999999999998

>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...

Probab=100.00  E-value=8.8e-44  Score=253.85  Aligned_cols=101  Identities=31%  Similarity=0.481  Sum_probs=91.7

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      ||..|+.+|+++|++||+|++|.      ++||++||||++|+|.||+++||+||+++|++|+ +++|++|||+||+||+
T Consensus        45 i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqvPv~v~~~Rr~~lAirWi~~~ar~r~-~k~m~~~La~EiidA~  123 (151)
T 1rss_A           45 IQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAA  123 (151)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEEEEECCHHHHHHHHHHHHHHHHTTSS-CSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCcHHHHHHHHHhCCCceEEEEeecCCEEEEEeeecCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            56678899999999999999996      8899999999999999999999999999999876 5899999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhhhhccccc
Q psy4243          76 DNKGKVVKKKTDLHRQCEANRAYAHYYF  103 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNRa~ahyrw  103 (104)
                      +|+|.+++||||+||||++||||+||||
T Consensus       124 ~~~g~aikKKee~hrmAeaNRAfahyRw  151 (151)
T 1rss_A          124 EGKGGAVKKKEDVERMAEANRAYAHYRW  151 (151)
T ss_dssp             TTCSHHHHHHHHHHHHHCC-----CSCC
T ss_pred             hCCCceeehHHHHHHHHHHhHhhhccCC
Confidence            9999999999999999999999999998

>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1

Probab=100.00  E-value=1.5e-43  Score=253.51  Aligned_cols=101  Identities=26%  Similarity=0.438  Sum_probs=88.9

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      ||..|+.+|+++|.+||+|++|.      ++||++||||++|+|.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus        49 I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPv~v~~~Rr~~lAirWi~~~ar~R~-~k~m~~~La~EiidA~  127 (155)
T 1hus_A           49 IRERTGKDPMEVFEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRN-EKTMEERLANEIMDAA  127 (155)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHCCSEEEECCEETTEECCEEEECCHHHHHHHHHHHHHHHHHHSC-SSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCcHHHHHHHHHhCCCceEEEEeecCCEEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            56678889999999999999997      8899999999999999999999999999999876 5899999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhhhhccccc
Q psy4243          76 DNKGKVVKKKTDLHRQCEANRAYAHYYF  103 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNRa~ahyrw  103 (104)
                      +|+|.+++||||+||||++||||+||||
T Consensus       128 ~~~g~aikKKee~hrmAeaNRAfahyRw  155 (155)
T 1hus_A          128 NNTGAAVKKREDTHKMAEANKAFAHYRW  155 (155)
T ss_dssp             TTCSHHHHHHHHHHHHHHHC--------
T ss_pred             hCCCceeehHHHHHHHHHHhHhhhccCC
Confidence            9999999999999999999999999998

>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=7.3e-42  Score=244.82  Aligned_cols=100  Identities=25%  Similarity=0.429  Sum_probs=96.1

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      ||..|+.+|+++|.+||+|++|.      ++||++||||++|+|.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus        50 i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPv~v~~~Rr~~lAirWi~~~ar~R~-~k~m~~~La~EiidA~  128 (155)
T 3bbn_G           50 IQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRP-GRNMAFKLSSELVDAA  128 (155)
T ss_dssp             TTTTCSSCTTHHHHHHGGGTCCSEEECCEEETTEEECCEEECCHHHHHHHHTTHHHHHHHTCC-SSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCChHHHHHHHHHhCCCCeEEEEeccCCeEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            67788899999999999999997      8899999999999999999999999999999876 5899999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhhhhcccc
Q psy4243          76 DNKGKVVKKKTDLHRQCEANRAYAHYY  102 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNRa~ahyr  102 (104)
                      +|+|.+++||||+||||++||||+|||
T Consensus       129 ~~~g~aikKKee~hkmAeaNRAfahyR  155 (155)
T 3bbn_G          129 KGSGDAVRKKEETHRMAEANRAFAHFR  155 (155)
T ss_dssp             HTCHHHHHHHHHHHHHSSSSGGGSCCC
T ss_pred             hCCCchhhHHHHHHHHHHHHHhhhcCC
Confidence            999999999999999999999999998

>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T

Probab=100.00  E-value=1.9e-34  Score=213.42  Aligned_cols=94  Identities=17%  Similarity=0.189  Sum_probs=89.5

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHH
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKD---KPSEVRFSDNLAQILI   72 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~---k~~~~~~~~~La~Eii   72 (104)
                      ||..|+.+|+++|.+||+|++|.      ++||++||||++|+|.||+++||+||+++|++   |+ +++|++|||+||+
T Consensus        95 I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~-~k~m~e~LA~Eii  173 (200)
T 2xzm_G           95 IHLVTGRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKS-MRSIAETLADEII  173 (200)
T ss_dssp             HHHHHCSCTHHHHHHHHHHSSCSEEEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTS-SSCHHHHHHHHHH
T ss_pred             HHHHcCCCcHHHHHHHHHhCCCceEEEEeccCCEEEEEeeECCHHHHHHHHHHHHHHHHHhhcccC-CCcHHHHHHHHHH
Confidence            56778999999999999999997      78999999999999999999999999999998   54 6899999999999


Q ss_pred             HHhcC---CChhHHhHHHHHHHHHHhh
Q psy4243          73 DGADN---KGKVVKKKTDLHRQCEANR   96 (104)
Q Consensus        73 ~A~~~---~g~aikkK~elhK~A~aNR   96 (104)
                      ||++|   +|.|++||||+||||++||
T Consensus       174 dAa~~~~~~g~AikKKee~hrmAeANR  200 (200)
T 2xzm_G          174 NAEKNNTQSSWAIRKKDEIEKVAKGNR  200 (200)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCCccCcchhhHHHHHHHHHhcC
Confidence            99999   9999999999999999997

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F

Probab=100.00  E-value=8.8e-34  Score=212.69  Aligned_cols=95  Identities=18%  Similarity=0.198  Sum_probs=88.3

Q ss_pred             ccccccChHHHHHHHhhhcccce----eec--ceeeeeccccChhHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHH
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI----KAH--LASIKVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQILID   73 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~----r~g--G~~~qvP~~i~~~rr~~lAirWii~~a~~k--~~~~~~~~~La~Eii~   73 (104)
                      ||..|+.+|+++|.+||+|++|.    ++|  |++||||++|+|.||+++|||||+++|+++  +++++|++|||+||||
T Consensus       121 I~~kT~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~tyqVPVeV~p~Rr~~LAiRWIi~aark~~~R~~ksmaerLA~ELid  200 (225)
T 3u5c_F          121 INVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELIN  200 (225)
T ss_dssp             HHHTTCSCHHHHHHHHHHTTSCSEEEECCCSSSSCCCEEEECCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHhcCCCceeHHHHHHHhCCCCeeEEEeccCCEEEEEeeecCHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence            57789999999999999999997    554  889999999999999999999999999983  3479999999999999


Q ss_pred             HhcCCCh--hHHhHHHHHHHHHHhh
Q psy4243          74 GADNKGK--VVKKKTDLHRQCEANR   96 (104)
Q Consensus        74 A~~~~g~--aikkK~elhK~A~aNR   96 (104)
                      |++|+|+  |++||||+||||++||
T Consensus       201 Aa~~~G~s~AiKKKee~HRmAeANR  225 (225)
T 3u5c_F          201 AAKGSSTSYAIKKKDELERVAKSNR  225 (225)
T ss_dssp             HHTTCSSSHHHHHHHHHHHHHHHTC
T ss_pred             HHhCCCcchhhHHHHHHHHHHHhcC
Confidence            9999996  9999999999999998

>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1

Probab=100.00  E-value=3.4e-33  Score=208.56  Aligned_cols=95  Identities=19%  Similarity=0.114  Sum_probs=89.0

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHH
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQILID   73 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k--~~~~~~~~~La~Eii~   73 (104)
                      ||..|+.+|+++|++||+|++|.      ++||++||||++|+|.||+++|||||+++|+++  +++++|+++||+||+|
T Consensus       114 I~~~t~~nPl~Vl~~Ai~N~~P~~ev~~~r~GG~~yqvPV~V~p~Rr~~lAirwI~~~ar~~~~R~~ksm~e~LA~Eii~  193 (218)
T 1iqv_A          114 IEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL  193 (218)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred             HHHHcCCCcHHHHHHHHHhCCCceEEEEeccCCEEEEEeeECCHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence            56778999999999999999997      789999999999999999999999999999983  2468999999999999


Q ss_pred             HhcCCC--hhHHhHHHHHHHHHHhh
Q psy4243          74 GADNKG--KVVKKKTDLHRQCEANR   96 (104)
Q Consensus        74 A~~~~g--~aikkK~elhK~A~aNR   96 (104)
                      |++|+|  .+++||+|+||||++||
T Consensus       194 Aa~~~g~s~AikKKee~hRmAeaNR  218 (218)
T 1iqv_A          194 AANKDPKSYAYSKKLEIERIAESSR  218 (218)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred             HHhCCCCcchhhHHHHHHHHHHhcC
Confidence            999986  99999999999999997

>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}

Probab=99.96  E-value=1.7e-34  Score=214.18  Aligned_cols=95  Identities=20%  Similarity=0.192  Sum_probs=89.7

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHH
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQILID   73 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k--~~~~~~~~~La~Eii~   73 (104)
                      ||..|+.+|+++|++||+|++|.      ++||++||||++|+|.||+++|||||+++|+++  +++++|++|||+||+|
T Consensus       100 I~~kt~~nPl~Vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m~e~LA~Elid  179 (204)
T 2zkq_g          100 IHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN  179 (204)
Confidence            67889999999999999999997      789999999999999999999999999999983  3468999999999999


Q ss_pred             HhcCCCh--hHHhHHHHHHHHHHhh
Q psy4243          74 GADNKGK--VVKKKTDLHRQCEANR   96 (104)
Q Consensus        74 A~~~~g~--aikkK~elhK~A~aNR   96 (104)
                      |++|+|.  +++||||+||||++||
T Consensus       180 Aa~~~g~s~AikKKee~hrmAeANR  204 (204)
T 2zkq_g          180 AAKGSSNSYAIKKKDELERVAKSNR  204 (204)
Confidence            9999987  9999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d1rssa_	145	a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermo	3e-19
d2qalg1	150	a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherich	5e-17
d1husa_	139	a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stear	3e-14
d1iqva_	201	a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyroc	2e-09

>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} Length = 145

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Thermus thermophilus [TaxId: 274]

 Score = 74.9 bits (184), Expect = 3e-19
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +S +  +   ++W ++ A  +  E R +  +A  L+D A+ KG  VKKK D+
Sbjct: 72  ANYQVPMEVSPRRQQSLALRWLVQAANQR-PERRAAVRIAHELMDAAEGKGGAVKKKEDV 130

Query: 89  HRQCEANRAYAHYYF 103
            R  EANRAYAHY +
Sbjct: 131 ERMAEANRAYAHYRW 145

>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} Length = 150

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Escherichia coli [TaxId: 562]

 Score = 69.1 bits (169), Expect = 5e-17
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 17  GLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGAD 76
               + + +   ++ +VP+ +         M+W +E A+ +  +   +  LA  L D A+
Sbjct: 69  PTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKR-GDKSMALRLANELSDAAE 127

Query: 77  NKGKVVKKKTDLHRQCEANRAYA 99
           NKG  VKK+ D+HR  EAN+A+A
Sbjct: 128 NKGTAVKKREDVHRMAEANKAFA 150

>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} Length = 139

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 61.4 bits (149), Expect = 3e-14
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 17  GLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGAD 76
            +  +   +   A+ +VP+ +         ++W ++ A+ + +E    + LA  ++D A+
Sbjct: 62  PVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLR-NEKTMEERLANEIMDAAN 120

Query: 77  NKGKVVKKKTDLHRQCEAN 95
           N G  VKK+ D H+  EAN
Sbjct: 121 NTGAAVKKREDTHKMAEAN 139

>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.3 bits (120), Expect = 2e-09
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 18  LCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKD--KPSEVRFSDNLAQILIDGA 75
             +  ++        V + IS        ++     A      +++ F++ LA+ +I  A
Sbjct: 119 REDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAA 178

Query: 76  DN--KGKVVKKKTDLHRQCEANR 96
           +   K     KK ++ R  E++R
Sbjct: 179 NKDPKSYAYSKKLEIERIAESSR 201

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1rssa_	145	Ribosomal protein S7 {Thermus thermophilus [TaxId:	100.0
d2qalg1	150	Ribosomal protein S7 {Escherichia coli [TaxId: 562	100.0
d1husa_	139	Ribosomal protein S7 {Bacillus stearothermophilus	100.0
d1iqva_	201	Ribosomal protein S7 {Archaeon Pyrococcus horikosh	100.0

>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.9e-41  Score=237.07  Aligned_cols=101  Identities=31%  Similarity=0.481  Sum_probs=91.7

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      |+..++.+++++|.+||+|++|.      ++||++||||+++++.||+++|||||+++|++|+ .++|+++||+||++|+
T Consensus        39 i~~~~~~npi~vl~~Ai~n~~P~~evk~~r~gG~~~~vPv~i~~~rr~~lAirwil~aa~~r~-~k~~~~~La~Eii~A~  117 (145)
T d1rssa_          39 IQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAA  117 (145)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEEEEECCHHHHHHHHHHHHHHHHTTSS-CSSHHHHHHHHHHHHH
T ss_pred             HHHhccCccHHHHHHHHhccccccceeeeeeCCcceeeeeccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            56778899999999999999997      7899999999999999999999999999999887 5899999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhhhhccccc
Q psy4243          76 DNKGKVVKKKTDLHRQCEANRAYAHYYF  103 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNRa~ahyrw  103 (104)
                      +|+|.+++||+|+||+|++||||+||||
T Consensus       118 ~~~g~aikkK~e~hK~A~aNRa~ah~Rw  145 (145)
T d1rssa_         118 EGKGGAVKKKEDVERMAEANRAYAHYRW  145 (145)
T ss_dssp             TTCSHHHHHHHHHHHHHCC-----CSCC
T ss_pred             cCCCceeehHHHHHHHHHHHHhhhccCC
Confidence            9999999999999999999999999999

>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.5e-38  Score=221.71  Aligned_cols=97  Identities=29%  Similarity=0.428  Sum_probs=92.2

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      |+..|+.+++++|.+||+|++|.      ++||++||||++|++.|++++||+||+++|++|+ +++|+++||+||+||+
T Consensus        48 i~~~t~~~pi~vl~~AI~nv~P~~ev~~~r~gG~~yqvP~~v~~~r~~~lAirWi~~aar~r~-~k~~~~~La~Eii~A~  126 (150)
T d2qalg1          48 LAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRG-DKSMALRLANELSDAA  126 (150)
T ss_dssp             HHHHHCSCHHHHHHHHHHHSCCSEEEEEEECSSSEEEEEEECCHHHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHT
T ss_pred             HHHhcCCCcchHHHHHHHHhccceeEEeeeeccccceeeeecChHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            45668889999999999999997      7899999999999999999999999999999876 5899999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHhhhhc
Q psy4243          76 DNKGKVVKKKTDLHRQCEANRAYA   99 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aNRa~a   99 (104)
                      +|+|.+++||||+||+|++|||||
T Consensus       127 ~~~g~avkKk~e~hk~AeaNRafa  150 (150)
T d2qalg1         127 ENKGTAVKKREDVHRMAEANKAFA  150 (150)
T ss_dssp             TTCSHHHHHHHHHHHHTTTTTTTC
T ss_pred             hCCCCeEeeHHHHHHHHHHHhccC
Confidence            999999999999999999999997

>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=9.5e-35  Score=202.65  Aligned_cols=93  Identities=24%  Similarity=0.375  Sum_probs=88.1

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA   75 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~   75 (104)
                      |+..|+.+++++|.+||+|++|.      ++||++||||+++++.||+++|||||+++|++|+ .++|+++||+||++|+
T Consensus        41 i~~~~~~~pi~vl~~Ai~n~~P~~ev~~~r~GG~~yqvPv~i~~~rr~~lAirwi~~~a~~r~-~~~~~~~La~Eii~A~  119 (139)
T d1husa_          41 IRERTGKDPMEVFEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRN-EKTMEERLANEIMDAA  119 (139)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHCCSEEEECCEETTEECCEEEECCHHHHHHHHHHHHHHHHHHSC-SSSHHHHHHHHHHHHH
T ss_pred             HHHhcCCCcchHHHHHHHhhhhhhheeeeeeCccceEeeEeeChHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            45667888999999999999996      8899999999999999999999999999999887 5899999999999999


Q ss_pred             cCCChhHHhHHHHHHHHHHh
Q psy4243          76 DNKGKVVKKKTDLHRQCEAN   95 (104)
Q Consensus        76 ~~~g~aikkK~elhK~A~aN   95 (104)
                      +|+|.+++||+|+||+|++|
T Consensus       120 ~~~g~avkKK~e~hk~AeaN  139 (139)
T d1husa_         120 NNTGAAVKKREDTHKMAEAN  139 (139)
T ss_dssp             TTCSHHHHHHHHHHHHHHHC
T ss_pred             hCCCceeeeHHHHHHHHhcC
Confidence            99999999999999999998

>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=6.4e-34  Score=209.00  Aligned_cols=95  Identities=19%  Similarity=0.121  Sum_probs=89.1

Q ss_pred             ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHH
Q psy4243           2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQILID   73 (104)
Q Consensus         2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k--~~~~~~~~~La~Eii~   73 (104)
                      ||+.|+.+|+++|++||+|++|.      ++||++||||++|+|.||+++||+||+++|+++  ++.++|+++||+||++
T Consensus        97 I~~kt~~nPl~Vl~~AI~N~~P~~Ev~~~r~GG~~yqvPv~vsp~Rr~~lAirwI~~~ar~~~~r~~ks~~e~LA~Eii~  176 (201)
T d1iqva_          97 IEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL  176 (201)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred             HHHhhCCChHHHHHHHHHhhcceEEEEEEecCCcccccCeeeCHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence            68889999999999999999997      789999999999999999999999999999985  3468999999999999


Q ss_pred             HhcCC--ChhHHhHHHHHHHHHHhh
Q psy4243          74 GADNK--GKVVKKKTDLHRQCEANR   96 (104)
Q Consensus        74 A~~~~--g~aikkK~elhK~A~aNR   96 (104)
                      |++|+  |.|++||+|+||||++||
T Consensus       177 Aa~~~~ks~AikKKeE~hk~A~aNR  201 (201)
T d1iqva_         177 AANKDPKSYAYSKKLEIERIAESSR  201 (201)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred             HHcCCCCcceEeehHHHHHHHHhcC
Confidence            99885  779999999999999998