Psyllid ID: psy4246

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MSANNVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEcccEEEEEEcccccccccccccccccccccccccccEEEEEccccEEEEEccccEEEccccccEEEEEcccccccccccccccccccEEEccccccccEEEEccccccccHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHccccccEEEcccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHccccccEEEcccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEEccccEEEEEEcccccccccccccccEEEEccccccccEEEEccccEEEEEEccccEEEcccccEEEEEccccccccccccccccccHHHHHccccccccEEEEcccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccEEEEEEEcHccHHHHHHHHHHHHHccccccEEEEccccccccccccccccEHHHEHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccEEccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHccccccccHHHcccccEEEc
Coil and Loop (DISEMBL)
msannvalpdsdsedelppgweervtadGCVYYVnhategtqwthprtgvkkkvsgdlplgweksvsedgkitfynkdthvktytdprivfakeekenpldirqKYDHSTKALQILhgrdlsnynaivtgantgiGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVfglgfshtedgfettFQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCAtsldlslpvsgsyfnnccrcppskaAQDEALATKLWKLSEEMIQSVVSTWLEEttergevvf
Flexible Loop (DISEMBL)
msannvalpdsdsedelppgWEERVTADGCVYYVNHAtegtqwthprtgvkkkvsgdlplgweksvsedgkitfynkdthvktytdprivfakeekenpldirqkYDHSTKALQIlhgrdlsnyNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVStwleettergevvf
Low Complexity Region (SEG)
MSANNVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF
Disordered region (IsUnstruct)
********************WEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKE*****LDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWL***********
Disordered Region (DISOPRED)
***************ELPPGWEERVTADGCVYYVNHATEGTQW**********VSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAK*********************ILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL****QGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVST*************
Disordered Region (DISEMBL)
*******************GWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLE**********
Disordered Region (DISPRO)
**************DELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEK*******************LHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSANNVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q9VLU5	409	WW domain-containing oxid	yes	N/A	0.725	0.581	0.553	8e-76
Q91WL8	414	WW domain-containing oxid	yes	N/A	0.740	0.586	0.532	1e-73
Q9NZC7	414	WW domain-containing oxid	yes	N/A	0.740	0.586	0.528	4e-73
Q5R9W5	414	WW domain-containing oxid	yes	N/A	0.740	0.586	0.528	1e-72
Q5F389	414	WW domain-containing oxid	yes	N/A	0.740	0.586	0.524	3e-72
Q803A8	412	WW domain-containing oxid	yes	N/A	0.689	0.548	0.510	7e-61
Q6RVV4	316	Short-chain dehydrogenase	N/A	N/A	0.411	0.427	0.447	1e-26
A2RVM0	322	Short-chain dehydrogenase	yes	N/A	0.405	0.413	0.410	6e-24
Q8BYK4	316	Retinol dehydrogenase 12	no	N/A	0.332	0.344	0.481	1e-21
Q96NR8	316	Retinol dehydrogenase 12	no	N/A	0.317	0.329	0.472	1e-20

>sp|Q9VLU5|WWOX_DROME WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1

 Score =  283 bits (725), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 134/242 (55%), Positives = 174/242 (71%), Gaps = 4/242 (1%)

Query: 6   VALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKS 65
           +ALPD+DSEDELPPGWEER T DG V YVN   + +QWTHPRTG  K+++G+LPLGWEK 
Sbjct: 2   IALPDTDSEDELPPGWEERATDDGTVCYVNQQGKTSQWTHPRTGRSKRITGELPLGWEKY 61

Query: 66  VSEDGK-ITFYNKDTHVKTYTDPRIVFAKEEK-ENPLDIRQKYDHSTKALQILHGRDLSN 123
             E GK   F NK+T  +T  DPR+ FA EE  +N   +RQ++D  + ALQ+LHG+DL  
Sbjct: 62  YDEQGKRFMFLNKETQQRTNVDPRLAFAVEEPTQNVAQVRQRFDSCSTALQVLHGKDLHG 121

Query: 124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA--QCIAMEL 181
             A++TGAN GIG+ETARSLA HGC +I ACR+   A  AI +I  E+P+A  +C    L
Sbjct: 122 RTALITGANCGIGYETARSLAHHGCEIIFACRNRSSAEAAIERIAQERPAARSRCRFAAL 181

Query: 182 NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQ 241
           +L  L+SV++F EE ++    ++ L+LNAGVF L ++ T DG ETTFQV+HL+HFYLTLQ
Sbjct: 182 DLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPYTRTVDGLETTFQVSHLSHFYLTLQ 241

Query: 242 LE 243
           LE
Sbjct: 242 LE 243

Putative oxidoreductase. May control genotoxic stress-induced cell death. May play a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. May play a role in Wnt signaling.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q91WL8|WWOX_MOUSE WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/244 (53%), Positives = 170/244 (69%)

Query: 7   ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSV 66
            L D+DSEDELPPGWEER T DG VYY NH  E TQW HP+TG +K+V+GDLP GWE+  
Sbjct: 8   GLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQET 67

Query: 67  SEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNA 126
            E+G++ F +      TY DPR+ F  ++       RQ+YD ST A++IL GRD +    
Sbjct: 68  DENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVV 127

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           +VTGAN+GIGFETA+S ALHG  VILACR+L +A++A+S+IL E   A+  AM L+L  L
Sbjct: 128 LVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVL 187

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           +SV+ FAE ++ K  SL++LV NAG F L +  T+DG ETTFQVNHL HFYL   L++ L
Sbjct: 188 RSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLVQLLQDVL 247

Query: 247 IKGA 250
            + +
Sbjct: 248 CRSS 251

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm (By similarity). May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9NZC7|WWOX_HUMAN WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1

 Score =  275 bits (702), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 129/244 (52%), Positives = 169/244 (69%)

Query: 7   ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSV 66
            L D+DSEDELPPGWEER T DG VYY NH  E TQW HP+TG +K+V+GDLP GWE+  
Sbjct: 8   GLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQET 67

Query: 67  SEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNA 126
            E+G++ F +      TY DPR+ F  ++       RQ+YD ST A++IL GRD +    
Sbjct: 68  DENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVV 127

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           +VTGAN+GIGFETA+S ALHG  VILACR++ +A++A+S+IL E   A+  AM L+L  L
Sbjct: 128 VVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALL 187

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           +SV+ FAE ++ K   L++LV NA  F L +S T+DG ETTFQVNHL HFYL   L++ L
Sbjct: 188 RSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVL 247

Query: 247 IKGA 250
            + A
Sbjct: 248 CRSA 251

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. Required for normal bone development (By similarity). May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R9W5|WWOX_PONAB WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/244 (52%), Positives = 169/244 (69%)

Query: 7   ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSV 66
            L D+DSEDELPPGWEER T DG VYY NH  E TQW HP+TG +K+V+GDLP GWE+  
Sbjct: 8   GLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQGT 67

Query: 67  SEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNA 126
            E+G++ F +      TY DPR+ F  ++       RQ+YD ST AL+IL GRD +    
Sbjct: 68  DENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTALEILQGRDFTGKVV 127

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           +VTGAN+GIGFETA+S ALHG  VILACR++ +A++A+S+IL E   A+  A+ L+L  L
Sbjct: 128 VVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALL 187

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           +SV+ FAE ++ K   L++LV NA  F L +S T+DG ETTFQVNHL HFYL   L++ L
Sbjct: 188 RSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVL 247

Query: 247 IKGA 250
            + A
Sbjct: 248 CRSA 251

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5F389|WWOX_CHICK WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2

 Score =  271 bits (694), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 128/244 (52%), Positives = 167/244 (68%)

Query: 7   ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSV 66
            L D+DSE+ELPPGWEER T DG VYY NH  E TQW HP++G +K+V+G LP GWE+  
Sbjct: 8   GLEDTDSEEELPPGWEERTTKDGWVYYANHLEEKTQWEHPKSGKRKRVAGGLPYGWEQET 67

Query: 67  SEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNA 126
            E+G++ F +      TY DPR+ F  E+       RQKYD ++ A++IL GRDLS    
Sbjct: 68  DENGQVYFVDHINKRTTYLDPRLAFTVEDNPAKPPTRQKYDGNSTAMEILQGRDLSGKVI 127

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           I+TGAN+GIGFETA+S ALHG  VILACR++ + NDA+ +IL E   A+  AM L+L  L
Sbjct: 128 IITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASL 187

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           +SV+ FAE ++ K   L+ILV NA +FG  +  TEDG E+TFQVNHL HFYL   LE+ L
Sbjct: 188 RSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLVQLLEDIL 247

Query: 247 IKGA 250
            + +
Sbjct: 248 RRSS 251

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q803A8|WWOX_DANRE WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1

 Score =  234 bits (597), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 118/231 (51%), Positives = 154/231 (66%), Gaps = 5/231 (2%)

Query: 7   ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSV 66
            + D+DSEDELPPGWEER T DG VYY NH    TQW HP+TG KK+ +G LP GWE+  
Sbjct: 8   GMEDTDSEDELPPGWEERSTKDGWVYYANHEEMKTQWEHPKTGKKKRCAGALPYGWEQET 67

Query: 67  SEDGKITFYNKDTHVKTYTDPRIVFAKEEKE-NPLDIRQKYDHSTKALQILHGRDLSNYN 125
            + G+I + +     KTY DPR  F  E+ +  P    ++YD +T AL+ILHG+DLS+  
Sbjct: 68  DDKGQIFYVDHINKRKTYFDPRQAFTVEDMQVKP----KRYDGNTGALEILHGQDLSDKV 123

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            IVTGAN+GIGFETARS ALHG  VILACR+  +A+ A S I+ E   A+   + L+L  
Sbjct: 124 IIVTGANSGIGFETARSFALHGAHVILACRNQSRASKAASLIMGEWSKARVEVLPLDLAS 183

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHF 236
           L+SV++FAE ++     L++LV NA V    +  TEDGFE+TFQ+ HL HF
Sbjct: 184 LRSVRQFAELFKATKLPLHVLVCNAAVCSQPWRLTEDGFESTFQICHLGHF 234

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6RVV4|TIC32_PEA Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 85/143 (59%)

Query: 106 YDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAIS 165
           +  S+ A Q+ HG D +   AIVTGA++GIG ET R LAL G  VI+  R++  A D   
Sbjct: 13  FSGSSTAEQVTHGIDATGLTAIVTGASSGIGAETTRVLALRGAHVIMGVRNMVAAKDVKD 72

Query: 166 KILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFE 225
            IL + PSA+  A+EL+L  L SVKKFA E+    R LNIL+ NAG+    F  ++D  E
Sbjct: 73  TILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIMACPFKLSKDNIE 132

Query: 226 TTFQVNHLAHFYLTLQLENALIK 248
             F  NH+ HF LT  L + + K
Sbjct: 133 LQFATNHIGHFLLTNLLLDTMKK 155

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2RVM0|TIC32_ARATH Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1

 Score =  111 bits (278), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/134 (41%), Positives = 79/134 (58%)

Query: 106 YDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAIS 165
           +   + A ++ HG D +   AIVTGA++GIG ETAR L+L G  V++A R+ D       
Sbjct: 12  FSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAVRNTDSGAKVKE 71

Query: 166 KILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFE 225
            I+ + P A+   MEL+L  ++SV+KFA EY+     LN+L+ NAG+    F  ++D  E
Sbjct: 72  DIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLSKDNIE 131

Query: 226 TTFQVNHLAHFYLT 239
             F  NHL HF LT
Sbjct: 132 LQFATNHLGHFLLT 145

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BYK4|RDH12_MOUSE Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 72/110 (65%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           ++TGANTGIG ETAR LA  G RV +ACR + K   A S+I  +  ++Q +  +L+L   
Sbjct: 43  VITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDT 102

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHF 236
           KS++ FAE +  + + L+IL+ NAGV    +S T DGFET F VNHL HF
Sbjct: 103 KSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHF 152

Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q96NR8|RDH12_HUMAN Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 71/110 (64%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           ++TGANTGIG ETAR LA  G RV +ACR + K   A S+I  +  ++Q +  +L+L   
Sbjct: 43  VITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDT 102

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHF 236
           KS++ FAE +  + + L+IL+ NAGV    +S T DGFET   VNHL HF
Sbjct: 103 KSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHF 152

Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
307188223	408	WW domain-containing oxidoreductase [Cam	0.679	0.546	0.629	2e-87
332018946	405	WW domain-containing oxidoreductase [Acr	0.731	0.592	0.622	4e-87
307205372	416	WW domain-containing oxidoreductase [Har	0.737	0.581	0.602	6e-84
340727851	414	PREDICTED: WW domain-containing oxidored	0.643	0.509	0.615	3e-83
350405764	412	PREDICTED: WW domain-containing oxidored	0.661	0.526	0.609	8e-82
383849412	414	PREDICTED: WW domain-containing oxidored	0.664	0.526	0.602	2e-81
380028387	414	PREDICTED: LOW QUALITY PROTEIN: WW domai	0.664	0.526	0.594	1e-80
66553886	414	PREDICTED: WW domain-containing oxidored	0.664	0.526	0.594	2e-80
91088307	412	PREDICTED: similar to WW domain-containi	0.737	0.587	0.604	5e-80
345480342	414	PREDICTED: WW domain-containing oxidored	0.725	0.574	0.569	1e-78

>gi|307188223|gb|EFN73055.1| WW domain-containing oxidoreductase [Camponotus floridanus]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 151/240 (62%), Positives = 192/240 (80%)

Query: 7   ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSV 66
            L DSDSEDELPPGWEER T DG VYYVNH T+GTQWTHPRTG KK V G+LP GWE+ +
Sbjct: 4   VLNDSDSEDELPPGWEERTTLDGNVYYVNHYTKGTQWTHPRTGRKKIVDGELPPGWERCI 63

Query: 67  SEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNA 126
           S+DGK+ F +      TYTDPR+ FA E +E    +RQ++D S+ AL +LHGRDL N  A
Sbjct: 64  SDDGKVLFVDHTNRTTTYTDPRLAFATEYREMSQPVRQRFDGSSTALAVLHGRDLRNKIA 123

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           +VTGANTGIGFETARSLALHGC VILACR ++KAN+AI +I  EK +A C+A++++L  L
Sbjct: 124 LVTGANTGIGFETARSLALHGCNVILACRDIEKANEAIRRIQQEKETANCMALQIDLSSL 183

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           +SV++  E++++KF+SL+IL+LNAGVFGL +  T+DG+ETTFQVNHL+ FYLTL LE+A+
Sbjct: 184 RSVREAFEQFKQKFKSLHILILNAGVFGLPYQLTKDGYETTFQVNHLSQFYLTLLLEHAI 243

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018946|gb|EGI59492.1| WW domain-containing oxidoreductase [Acromyrmex echinatior]

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 150/241 (62%), Positives = 190/241 (78%)

Query: 6   VALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKS 65
           V L DSDSEDELPPGWEER T DG VYYVNH T+GTQWTHPRTG KK V+GDLP GWE+ 
Sbjct: 2   VILNDSDSEDELPPGWEERTTLDGNVYYVNHYTKGTQWTHPRTGRKKIVNGDLPSGWERC 61

Query: 66  VSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYN 125
           +S+DGK+ + +      TYTDPR+ FA E +E    IRQ++D S+ AL +LHGRDL N  
Sbjct: 62  ISDDGKVLYIDHTNRTTTYTDPRLAFATEYREMSQIIRQRFDGSSTALAVLHGRDLRNKV 121

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A++TGANTGIGFETARSLALHGC VILACR ++KAN+AI  I  EK +A C+A++++L  
Sbjct: 122 ALITGANTGIGFETARSLALHGCNVILACRDMEKANEAIKHIQQEKDTANCVALQMDLSS 181

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA 245
           L SV++ AE++++KF+ L+IL+LNAGVFGL +  T+DG+ETTFQVNHL+ FYLTL L+  
Sbjct: 182 LSSVREAAEQFKQKFKCLDILILNAGVFGLPYQLTKDGYETTFQVNHLSQFYLTLLLKQT 241

Query: 246 L 246
           +
Sbjct: 242 I 242

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205372|gb|EFN83713.1| WW domain-containing oxidoreductase [Harpegnathos saltator]

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 147/244 (60%), Positives = 189/244 (77%)

Query: 7   ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSV 66
            L +SDSEDELPPGWEER T DG VYYVNH T+GTQWTHPRTG KK V GDLP GWE+ V
Sbjct: 4   VLNESDSEDELPPGWEERTTLDGNVYYVNHYTKGTQWTHPRTGRKKIVDGDLPSGWERCV 63

Query: 67  SEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNA 126
           S+DGK+ F +      TYTDPR+ FA E ++    +RQ++D S+ AL +L+GRDL +  A
Sbjct: 64  SDDGKVLFVDHTNRTTTYTDPRLAFATEYRDMSQPVRQRFDGSSTALAVLYGRDLRDKVA 123

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           +VTGANTGIG+ETARSLALHGC V+LACRS++KA +AI +I  EK S  C  ++L+L  L
Sbjct: 124 LVTGANTGIGYETARSLALHGCNVVLACRSVEKAEEAIRRIKCEKESVNCTVLKLDLSSL 183

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
            +V++ AEE++K F++L+IL+LNAGVFG+ +  T DG+ETTFQVNHL+ FYLTL LE+++
Sbjct: 184 HNVQEAAEEFKKAFKTLDILILNAGVFGIPYQLTNDGYETTFQVNHLSQFYLTLLLEHSI 243

Query: 247 IKGA 250
            K A
Sbjct: 244 QKAA 247

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727851|ref|XP_003402248.1| PREDICTED: WW domain-containing oxidoreductase-like [Bombus terrestris]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 147/239 (61%), Positives = 182/239 (76%)

Query: 8   LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVS 67
           L +SDSEDELPPGWEE  T +G VYYVNH T+GTQWTHPRTG  K V+G+LP GWEK VS
Sbjct: 5   LNESDSEDELPPGWEEMTTPNGNVYYVNHCTKGTQWTHPRTGRTKTVAGELPSGWEKRVS 64

Query: 68  EDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAI 127
           EDG++ F +   H  TYTDPR+ FA E +E+   IRQ++D ++ AL +LHGRDL    AI
Sbjct: 65  EDGQVLFVDHMNHTTTYTDPRLAFATECRESSQPIRQRFDSTSTALSVLHGRDLRGKIAI 124

Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK 187
           VTGANTGIGFETARSLALHGC+VILACR L+K  +A+ +I +EK    C  + L+L  L 
Sbjct: 125 VTGANTGIGFETARSLALHGCKVILACRDLEKGAEAVRRIQSEKEGVMCETLHLDLSSLC 184

Query: 188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           SV K A+E+Q+K+R+LNIL+LNAGVF + +  T+DGFETTFQVNHL+ FY TL L+  L
Sbjct: 185 SVNKAADEFQQKYRTLNILILNAGVFAIPYELTQDGFETTFQVNHLSQFYFTLLLKGPL 243

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405764|ref|XP_003487542.1| PREDICTED: WW domain-containing oxidoreductase-like [Bombus impatiens]

 Score =  310 bits (793), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 147/241 (60%), Positives = 181/241 (75%)

Query: 6   VALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKS 65
           + L +SDSEDELPPGWEE  T +G VYYVNH T+GTQWTHPRTG  K V G+LP GWEK 
Sbjct: 1   MILNESDSEDELPPGWEEMTTPNGNVYYVNHYTKGTQWTHPRTGRTKTVGGELPSGWEKR 60

Query: 66  VSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYN 125
           VSEDG++ F +      TYTDPR+ FA E +E+   IRQ++D S+ AL +LHGRDL    
Sbjct: 61  VSEDGQVLFVDHINRTTTYTDPRLAFATEYRESSQPIRQRFDSSSTALSVLHGRDLRGKL 120

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVTGANTGIGFETARSLALHGC+VILACR L+K  +AI KI  EK +  C  + L+L  
Sbjct: 121 AIVTGANTGIGFETARSLALHGCKVILACRDLEKGAEAIQKIQQEKENVMCETLHLDLSS 180

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA 245
           L SVK+ A+E+ +K+ +LNIL+LNAGVF + ++ T+DGFETTFQVNHL+ FY TL L+  
Sbjct: 181 LYSVKEAADEFNQKYSTLNILILNAGVFAIPYALTKDGFETTFQVNHLSQFYFTLLLKEP 240

Query: 246 L 246
           L
Sbjct: 241 L 241

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849412|ref|XP_003700339.1| PREDICTED: WW domain-containing oxidoreductase-like [Megachile rotundata]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 144/239 (60%), Positives = 180/239 (75%)

Query: 8   LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVS 67
           L DSDSEDELPPGWEE  T DG VYYVNH T+GTQWTHPRTG KK V G+LP GW++ VS
Sbjct: 5   LNDSDSEDELPPGWEEMTTVDGNVYYVNHYTKGTQWTHPRTGRKKIVEGELPSGWDRCVS 64

Query: 68  EDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAI 127
           EDG++ F +      TYTDPR+ FA E +E+   +RQ++D S+ AL +LHGRDL    AI
Sbjct: 65  EDGRVLFIDHVNRTTTYTDPRLAFATEYRESSQPVRQRFDSSSTALSVLHGRDLRGKIAI 124

Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK 187
           VTGANTGIGFETARSLALHGC+VILACR L K  +AI KI  E+ S  C  + L+L  L 
Sbjct: 125 VTGANTGIGFETARSLALHGCKVILACRDLKKGEEAIKKIQQERDSVICEILHLDLSSLH 184

Query: 188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           SV++ AE++++K+R+L+IL+LNAGVF   +  T+DG+ETTFQ+NHL+ FY TL LE  +
Sbjct: 185 SVREAAEKFKQKYRTLHILILNAGVFACPYQLTKDGYETTFQINHLSQFYFTLLLEQQI 243

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028387|ref|XP_003697884.1| PREDICTED: LOW QUALITY PROTEIN: WW domain-containing oxidoreductase-like [Apis florea]

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/239 (59%), Positives = 181/239 (75%)

Query: 8   LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVS 67
           L DSDSEDELPPGWEE  TA+G VYYVNH T+GTQWTHPRTG  K V G+LP GWE+ V+
Sbjct: 5   LNDSDSEDELPPGWEEMTTANGNVYYVNHYTKGTQWTHPRTGRTKTVEGELPSGWERRVA 64

Query: 68  EDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAI 127
           EDG++ F +   H  TYTDPR+ FA E +E    +RQ++D S+ AL +LHGRDL    AI
Sbjct: 65  EDGQVLFVDHINHTTTYTDPRLAFATEYRELSHPMRQRFDGSSTALSVLHGRDLRGKIAI 124

Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK 187
           VTGANTGIGFETARSLALHGC VI+ACR L K  +A+ KI  E+ +  C  + L+L  L 
Sbjct: 125 VTGANTGIGFETARSLALHGCTVIIACRDLKKGTEAVEKIKQERENVLCETLHLDLSSLH 184

Query: 188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           SV++ AE++++K+R+L+IL+LNAGVF + +  T+DG+ETTFQVNHL+ FY TL LE+ +
Sbjct: 185 SVREAAEKFKQKYRTLHILILNAGVFAIPYQLTKDGYETTFQVNHLSQFYFTLLLEHPI 243

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66553886|ref|XP_395282.2| PREDICTED: WW domain-containing oxidoreductase isoform 1 [Apis mellifera]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 142/239 (59%), Positives = 181/239 (75%)

Query: 8   LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVS 67
           L +SDSEDELPPGWEE  TA+G VYYVNH T+GTQWTHPRTG  K V G+LP GWE+ V+
Sbjct: 5   LNESDSEDELPPGWEEMTTANGNVYYVNHYTKGTQWTHPRTGRTKTVEGELPSGWERRVA 64

Query: 68  EDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAI 127
           EDG++ F +   H  TYTDPR+ FA E +E    +RQ++D S+ AL +LHGRDL    AI
Sbjct: 65  EDGQVLFVDHINHTTTYTDPRLAFATEYRELSHPMRQRFDGSSTALSVLHGRDLRGKIAI 124

Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK 187
           VTGANTGIGFETARSLALHGC VI+ACR L K  +AI KI  E+ +  C  + L+L  L 
Sbjct: 125 VTGANTGIGFETARSLALHGCTVIIACRDLKKGTEAIEKIKQERENVLCETLHLDLSSLH 184

Query: 188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           SV++ AE++++K+R+L+IL+LNAGVF + +  T+DG+ETTFQVNHL+ FY TL LE+ +
Sbjct: 185 SVREAAEKFKQKYRTLHILILNAGVFAIPYQLTKDGYETTFQVNHLSQFYFTLLLEHPI 243

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088307|ref|XP_969348.1| PREDICTED: similar to WW domain-containing oxidoreductase [Tribolium castaneum]

 Score =  304 bits (778), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/245 (60%), Positives = 185/245 (75%), Gaps = 3/245 (1%)

Query: 8   LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVS 67
           LP+SDSEDELPPGWEERVT DG V+Y NH T+ TQWTHPRTG KK+VSGDLP GWE+ + 
Sbjct: 3   LPESDSEDELPPGWEERVTVDGSVFYANHLTKATQWTHPRTGKKKRVSGDLPFGWERCID 62

Query: 68  E-DGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNA 126
           +  GK+ + + +    TYTDPR+ FA EEK++P D RQ++D S+ ALQ+LHGRDL+   A
Sbjct: 63  KTSGKVIYVDHENRRTTYTDPRLAFAVEEKDHPNDYRQRFDGSSTALQVLHGRDLNGKVA 122

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA--QCIAMELNLC 184
           +VTGAN+GIGFETARSLA HG  VI ACR L+ A +AI+K+  EK +A   C+A+ L+L 
Sbjct: 123 LVTGANSGIGFETARSLAKHGASVIFACRDLEGAAEAIAKVREEKEAAGENCVAIYLDLG 182

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN 244
            L SV  FA + +  F+ +++L+LNAGVFGL FS T DGFETTFQVNHL HFYLTL L  
Sbjct: 183 DLHSVDSFANQVKTMFKQIDMLILNAGVFGLAFSKTVDGFETTFQVNHLGHFYLTLLLRP 242

Query: 245 ALIKG 249
            L+ G
Sbjct: 243 LLVTG 247

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480342|ref|XP_001606146.2| PREDICTED: WW domain-containing oxidoreductase-like [Nasonia vitripennis]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/239 (56%), Positives = 179/239 (74%)

Query: 8   LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVS 67
           L DSDSEDELPPGWEER + DG VYYVNH T+ TQWTHP+TG KK V G+LP GWE+ VS
Sbjct: 5   LNDSDSEDELPPGWEERASLDGNVYYVNHFTKCTQWTHPQTGRKKIVEGELPAGWERCVS 64

Query: 68  EDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAI 127
            +G++ F +      TYTDPR+ FA E +E+   +RQ++D ++ AL +L+GRDL N  A+
Sbjct: 65  SEGQVLFVDHTNRTTTYTDPRLAFATEYRESSQPVRQRFDGTSTALSVLYGRDLRNKVAL 124

Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK 187
           VTGANTGIGFE ARSLALHGC V+ ACR L+KA  A+ K+  E+ +  C  + L+LC L 
Sbjct: 125 VTGANTGIGFEAARSLALHGCTVVFACRDLEKAKAAVKKVQQERENVTCDILHLDLCSLH 184

Query: 188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           SV+  A ++++K+R+LNIL+LNAGVF + ++ T+DG+E  FQVNHL+ FYLTL LE+ L
Sbjct: 185 SVQAAAAKFKQKYRTLNILILNAGVFAVPYTLTQDGYEMQFQVNHLSQFYLTLLLEHPL 243

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
UNIPROTKB|Q0P5N4	414	WWOX "Uncharacterized protein"	0.762	0.603	0.533	9.3e-84
MGI|MGI:1931237	414	Wwox "WW domain-containing oxi	0.762	0.603	0.529	1.5e-83
UNIPROTKB|Q5R9W5	414	WWOX "WW domain-containing oxi	0.762	0.603	0.525	2.2e-82
UNIPROTKB|Q9NZC7	414	WWOX "WW domain-containing oxi	0.762	0.603	0.525	2.8e-82
UNIPROTKB|F1NXW7	414	WWOX "WW domain-containing oxi	0.75	0.594	0.530	7.4e-82
UNIPROTKB|Q5F389	414	WWOX "WW domain-containing oxi	0.75	0.594	0.530	7.4e-82
UNIPROTKB|E1C8R5	390	WWOX "WW domain-containing oxi	0.75	0.630	0.530	4.1e-73
ZFIN|ZDB-GENE-040426-858	412	wwox "WW domain containing oxi	0.737	0.587	0.5	4.1e-73
FB|FBgn0031972	409	Wwox "WW domain containing oxi	0.725	0.581	0.553	1.1e-69
UNIPROTKB|E2RQC4	390	WWOX "Uncharacterized protein"	0.762	0.641	0.521	6.5e-67

UNIPROTKB|Q0P5N4 WWOX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 696 (250.1 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
 Identities = 134/251 (53%), Positives = 177/251 (70%)

Query:     1 MSANNVA-LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
             M+A   A L D+DSEDELPPGWE+R T DG VYY NH  E TQW HP+TG +K+++GDLP
Sbjct:     1 MAALRYAGLDDTDSEDELPPGWEQRTTKDGWVYYANHTEEKTQWEHPKTGKRKRIAGDLP 60

Query:    60 LGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGR 119
              GWE+   E+G++ F +      TY DPR+ F  ++       RQ+YD ST A++IL GR
Sbjct:    61 YGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTAMEILQGR 120

Query:   120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             DLS    +VTGAN+GIGFETA+S ALHG  VILACR++ +AN+A+S+IL E   A+  AM
Sbjct:   121 DLSGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMTRANEAVSRILGEWHKAKVEAM 180

Query:   180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
              L+L  L+SV+ FA+ ++ K  SL++LV NA VFGL ++ T+DG ETTFQVNHL HFYL 
Sbjct:   181 TLDLALLRSVQHFAQAFKAKNVSLHVLVCNAAVFGLPWTLTKDGLETTFQVNHLGHFYLV 240

Query:   240 LQLENALIKGA 250
               L++ L + A
Sbjct:   241 QLLQDVLCRSA 251

GO:0005634 "nucleus" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1931237 Wwox "WW domain-containing oxidoreductase" [Mus musculus (taxid:10090)]

 Score = 685 (246.2 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
 Identities = 133/251 (52%), Positives = 174/251 (69%)

Query:     1 MSANNVA-LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
             M+A   A L D+DSEDELPPGWEER T DG VYY NH  E TQW HP+TG +K+V+GDLP
Sbjct:     1 MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLP 60

Query:    60 LGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGR 119
              GWE+   E+G++ F +      TY DPR+ F  ++       RQ+YD ST A++IL GR
Sbjct:    61 YGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTAMEILQGR 120

Query:   120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             D +    +VTGAN+GIGFETA+S ALHG  VILACR+L +A++A+S+IL E   A+  AM
Sbjct:   121 DFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAM 180

Query:   180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
              L+L  L+SV+ FAE ++ K  SL++LV NAG F L +  T+DG ETTFQVNHL HFYL 
Sbjct:   181 TLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLV 240

Query:   240 LQLENALIKGA 250
               L++ L + +
Sbjct:   241 QLLQDVLCRSS 251

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=NAS

GO:0001649 "osteoblast differentiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO;IPI

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0048705 "skeletal system morphogenesis" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=ISO;IDA

UNIPROTKB|Q5R9W5 WWOX "WW domain-containing oxidoreductase" [Pongo abelii (taxid:9601)]

 Score = 677 (243.4 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
 Identities = 132/251 (52%), Positives = 173/251 (68%)

Query:     1 MSANNVA-LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
             M+A   A L D+DSEDELPPGWEER T DG VYY NH  E TQW HP+TG +K+V+GDLP
Sbjct:     1 MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLP 60

Query:    60 LGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGR 119
              GWE+   E+G++ F +      TY DPR+ F  ++       RQ+YD ST AL+IL GR
Sbjct:    61 YGWEQGTDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTALEILQGR 120

Query:   120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             D +    +VTGAN+GIGFETA+S ALHG  VILACR++ +A++A+S+IL E   A+  A+
Sbjct:   121 DFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAV 180

Query:   180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
              L+L  L+SV+ FAE ++ K   L++LV NA  F L +S T+DG ETTFQVNHL HFYL 
Sbjct:   181 TLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLV 240

Query:   240 LQLENALIKGA 250
               L++ L + A
Sbjct:   241 QLLQDVLCRSA 251

GO:0005737 "cytoplasm" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

UNIPROTKB|Q9NZC7 WWOX "WW domain-containing oxidoreductase" [Homo sapiens (taxid:9606)]

 Score = 679 (244.1 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
 Identities = 132/251 (52%), Positives = 173/251 (68%)

Query:     1 MSANNVA-LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
             M+A   A L D+DSEDELPPGWEER T DG VYY NH  E TQW HP+TG +K+V+GDLP
Sbjct:     1 MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLP 60

Query:    60 LGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGR 119
              GWE+   E+G++ F +      TY DPR+ F  ++       RQ+YD ST A++IL GR
Sbjct:    61 YGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTAMEILQGR 120

Query:   120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             D +    +VTGAN+GIGFETA+S ALHG  VILACR++ +A++A+S+IL E   A+  AM
Sbjct:   121 DFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAM 180

Query:   180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
              L+L  L+SV+ FAE ++ K   L++LV NA  F L +S T+DG ETTFQVNHL HFYL 
Sbjct:   181 TLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLV 240

Query:   240 LQLENALIKGA 250
               L++ L + A
Sbjct:   241 QLLQDVLCRSA 251

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=NAS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0008202 "steroid metabolic process" evidence=TAS

GO:0046983 "protein dimerization activity" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0050662 "coenzyme binding" evidence=TAS

GO:0048037 "cofactor binding" evidence=TAS

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0048705 "skeletal system morphogenesis" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

UNIPROTKB|F1NXW7 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 670 (240.9 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
 Identities = 131/247 (53%), Positives = 169/247 (68%)

Query:     1 MSANNVA-LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
             M+A   A L D+DSE+ELPPGWEER T DG VYY NH  E TQW HP++G +K+V+G LP
Sbjct:     1 MAALKYAGLEDTDSEEELPPGWEERTTKDGWVYYANHLEEKTQWEHPKSGKRKRVAGGLP 60

Query:    60 LGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGR 119
              GWE+   E+G++ F +      TY DPR+ F  E+       RQKYD ++ A++IL GR
Sbjct:    61 YGWEQETDENGQVYFVDHINKRTTYLDPRLAFTVEDNPAKPPTRQKYDGNSTAMEILQGR 120

Query:   120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             DLS    I+TGAN+GIGFETA+S ALHG  VILACR++ + NDA+ +IL E   A+  AM
Sbjct:   121 DLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAM 180

Query:   180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
              L+L  L+SV+ FAE ++ K   L+ILV NA +FG  +  TEDG E+TFQVNHL HFYL 
Sbjct:   181 TLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLV 240

Query:   240 LQLENAL 246
               LE+ L
Sbjct:   241 QLLEDIL 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IEA

UNIPROTKB|Q5F389 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 670 (240.9 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
 Identities = 131/247 (53%), Positives = 169/247 (68%)

Query:     1 MSANNVA-LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
             M+A   A L D+DSE+ELPPGWEER T DG VYY NH  E TQW HP++G +K+V+G LP
Sbjct:     1 MAALKYAGLEDTDSEEELPPGWEERTTKDGWVYYANHLEEKTQWEHPKSGKRKRVAGGLP 60

Query:    60 LGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGR 119
              GWE+   E+G++ F +      TY DPR+ F  E+       RQKYD ++ A++IL GR
Sbjct:    61 YGWEQETDENGQVYFVDHINKRTTYLDPRLAFTVEDNPAKPPTRQKYDGNSTAMEILQGR 120

Query:   120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             DLS    I+TGAN+GIGFETA+S ALHG  VILACR++ + NDA+ +IL E   A+  AM
Sbjct:   121 DLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAM 180

Query:   180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
              L+L  L+SV+ FAE ++ K   L+ILV NA +FG  +  TEDG E+TFQVNHL HFYL 
Sbjct:   181 TLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLV 240

Query:   240 LQLENAL 246
               LE+ L
Sbjct:   241 QLLEDIL 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1C8R5 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 670 (240.9 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
 Identities = 131/247 (53%), Positives = 169/247 (68%)

Query:     1 MSANNVA-LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
             M+A   A L D+DSE+ELPPGWEER T DG VYY NH  E TQW HP++G +K+V+G LP
Sbjct:     1 MAALKYAGLEDTDSEEELPPGWEERTTKDGWVYYANHLEEKTQWEHPKSGKRKRVAGGLP 60

Query:    60 LGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGR 119
              GWE+   E+G++ F +      TY DPR+ F  E+       RQKYD ++ A++IL GR
Sbjct:    61 YGWEQETDENGQVYFVDHINKRTTYLDPRLAFTVEDNPAKPPTRQKYDGNSTAMEILQGR 120

Query:   120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             DLS    I+TGAN+GIGFETA+S ALHG  VILACR++ + NDA+ +IL E   A+  AM
Sbjct:   121 DLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAM 180

Query:   180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
              L+L  L+SV+ FAE ++ K   L+ILV NA +FG  +  TEDG E+TFQVNHL HFYL 
Sbjct:   181 TLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLV 240

Query:   240 LQLENAL 246
               LE+ L
Sbjct:   241 QLLEDIL 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-858 wwox "WW domain containing oxidoreductase" [Danio rerio (taxid:7955)]

 Score = 591 (213.1 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
 Identities = 124/248 (50%), Positives = 163/248 (65%)

Query:     1 MSANNVA-LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
             M+A   A + D+DSEDELPPGWEER T DG VYY NH    TQW HP+TG KK+ +G LP
Sbjct:     1 MAALKYAGMEDTDSEDELPPGWEERSTKDGWVYYANHEEMKTQWEHPKTGKKKRCAGALP 60

Query:    60 LGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKE-NPLDIRQKYDHSTKALQILHG 118
              GWE+   + G+I + +     KTY DPR  F  E+ +  P    ++YD +T AL+ILHG
Sbjct:    61 YGWEQETDDKGQIFYVDHINKRKTYFDPRQAFTVEDMQVKP----KRYDGNTGALEILHG 116

Query:   119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
             +DLS+   IVTGAN+GIGFETARS ALHG  VILACR+  +A+ A S I+ E   A+   
Sbjct:   117 QDLSDKVIIVTGANSGIGFETARSFALHGAHVILACRNQSRASKAASLIMGEWSKARVEV 176

Query:   179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYL 238
             + L+L  L+SV++FAE ++     L++LV NA V    +  TEDGFE+TFQ+ HL HF L
Sbjct:   177 LPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWRLTEDGFESTFQICHLGHFLL 236

Query:   239 TLQLENAL 246
                L++ L
Sbjct:   237 VQLLQDVL 244

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0031972 Wwox "WW domain containing oxidoreductase" [Drosophila melanogaster (taxid:7227)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 134/242 (55%), Positives = 174/242 (71%)

Query:     6 VALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKS 65
             +ALPD+DSEDELPPGWEER T DG V YVN   + +QWTHPRTG  K+++G+LPLGWEK 
Sbjct:     2 IALPDTDSEDELPPGWEERATDDGTVCYVNQQGKTSQWTHPRTGRSKRITGELPLGWEKY 61

Query:    66 VSEDGK-ITFYNKDTHVKTYTDPRIVFAKEEK-ENPLDIRQKYDHSTKALQILHGRDLSN 123
               E GK   F NK+T  +T  DPR+ FA EE  +N   +RQ++D  + ALQ+LHG+DL  
Sbjct:    62 YDEQGKRFMFLNKETQQRTNVDPRLAFAVEEPTQNVAQVRQRFDSCSTALQVLHGKDLHG 121

Query:   124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQ--CIAMEL 181
               A++TGAN GIG+ETARSLA HGC +I ACR+   A  AI +I  E+P+A+  C    L
Sbjct:   122 RTALITGANCGIGYETARSLAHHGCEIIFACRNRSSAEAAIERIAQERPAARSRCRFAAL 181

Query:   182 NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQ 241
             +L  L+SV++F EE ++    ++ L+LNAGVF L ++ T DG ETTFQV+HL+HFYLTLQ
Sbjct:   182 DLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPYTRTVDGLETTFQVSHLSHFYLTLQ 241

Query:   242 LE 243
             LE
Sbjct:   242 LE 243

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010165 "response to X-ray" evidence=IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

UNIPROTKB|E2RQC4 WWOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 131/251 (52%), Positives = 174/251 (69%)

Query:     1 MSANNVA-LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
             M+A   A L D+DSEDELPPGWE+R T DG VYY NHA E TQW HP+TG +K+++GDLP
Sbjct:     1 MAALRYAGLDDTDSEDELPPGWEQRTTKDGWVYYANHAEEKTQWEHPKTGKRKRIAGDLP 60

Query:    60 LGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGR 119
              GWE+   E+G++ F +      TY DPR+ F  ++       RQ+YD  T A++IL GR
Sbjct:    61 YGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTSRQRYDGGTTAMEILQGR 120

Query:   120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             D +    +VTGAN+GIGFETA+S ALHG  VILACR++ +AN+A+S+IL E   A+  AM
Sbjct:   121 DFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMTRANEAVSQILGEWHKAKVEAM 180

Query:   180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
              L+L  L+SV+ FA+ ++ K  SL++LV NA  F L +S T+DG ETTFQVNHL HFYL 
Sbjct:   181 TLDLALLRSVQHFAQAFKAKNVSLHVLVCNAAAFALPWSLTKDGLETTFQVNHLGHFYLV 240

Query:   240 LQLENALIKGA 250
               L++ L + A
Sbjct:   241 QLLQDVLCRSA 251

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q91WL8	WWOX_MOUSE	1, ., 1, ., 1, ., -	0.5327	0.7408	0.5869	yes	N/A
Q803A8	WWOX_DANRE	1, ., 1, ., 1, ., -	0.5108	0.6890	0.5485	yes	N/A
Q5F389	WWOX_CHICK	1, ., 1, ., 1, ., -	0.5245	0.7408	0.5869	yes	N/A
Q9NZC7	WWOX_HUMAN	1, ., 1, ., 1, ., -	0.5286	0.7408	0.5869	yes	N/A
Q5R9W5	WWOX_PONAB	1, ., 1, ., 1, ., -	0.5286	0.7408	0.5869	yes	N/A
Q9VLU5	WWOX_DROME	1, ., 1, ., 1, ., -	0.5537	0.7256	0.5819	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	328
cd09809	284	cd09809, human_WWOX_like_SDR_c-like, human WWOX (W	2e-50
cd05327	269	cd05327, retinol-DH_like_SDR_c_like, retinol dehyd	2e-48
PRK06197	306	PRK06197, PRK06197, short chain dehydrogenase; Pro	5e-38
cd09807	274	cd09807, retinol-DH_like_SDR_c, retinol dehydrogen	2e-34
PRK06196	315	PRK06196, PRK06196, oxidoreductase; Provisional	3e-32
cd05233	234	cd05233, SDR_c, classical (c) SDRs	2e-26
cd09810	311	cd09810, LPOR_like_SDR_c_like, light-dependent pro	5e-25
PRK05854	313	PRK05854, PRK05854, short chain dehydrogenase; Pro	2e-24
COG1028	251	COG1028, FabG, Dehydrogenases with different speci	5e-22
cd05324	225	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu	2e-21
PLN00015	308	PLN00015, PLN00015, protochlorophyllide reductase	1e-19
PRK07453	322	PRK07453, PRK07453, protochlorophyllide oxidoreduc	1e-19
cd09809	284	cd09809, human_WWOX_like_SDR_c-like, human WWOX (W	1e-18
TIGR01289	314	TIGR01289, LPOR, light-dependent protochlorophylli	3e-17
cd05333	240	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein	7e-17
cd09808	255	cd09808, DHRS-12_like_SDR_c-like, human dehydrogen	7e-17
cd05332	257	cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste	2e-16
COG4221	246	COG4221, COG4221, Short-chain alcohol dehydrogenas	2e-16
COG0300	265	COG0300, DltE, Short-chain dehydrogenases of vario	7e-16
cd08941	290	cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas	3e-15
cd05369	249	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta	7e-15
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	2e-14
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-14
TIGR01830	239	TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier	2e-14
cd05347	248	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena	9e-14
PRK07067	257	PRK07067, PRK07067, sorbitol dehydrogenase; Provis	5e-13
cd05344	253	cd05344, BKR_like_SDR_like, putative beta-ketoacyl	6e-13
cd05325	233	cd05325, carb_red_sniffer_like_SDR_c, carbonyl red	6e-13
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	8e-13
PRK05557	248	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-12
PRK07035	252	PRK07035, PRK07035, short chain dehydrogenase; Pro	3e-12
cd00201	31	cd00201, WW, Two conserved tryptophans domain; als	4e-12
smart00456	33	smart00456, WW, Domain with 2 conserved Trp (W) re	5e-12
cd05365	242	cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi	5e-12
cd05346	249	cd05346, SDR_c5, classical (c) SDR, subgroup 5	6e-12
cd05370	228	cd05370, SDR_c2, classical (c) SDR, subgroup 2	8e-12
PRK07231	251	PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein)	9e-12
PRK12825	249	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein)	9e-12
PRK05565	247	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-11
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	2e-11
cd05339	243	cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy	2e-11
cd05352	252	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M	2e-11
pfam00397	30	pfam00397, WW, WW domain	1e-10
PRK12939	250	PRK12939, PRK12939, short chain dehydrogenase; Pro	1e-10
PRK05866	293	PRK05866, PRK05866, short chain dehydrogenase; Pro	2e-10
cd05362	243	cd05362, THN_reductase-like_SDR_c, tetrahydroxynap	2e-10
cd05340	236	cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li	2e-10
cd05355	270	cd05355, SDR_c1, classical (c) SDR, subgroup 1	2e-10
cd08939	239	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine	4e-10
PRK08589	272	PRK08589, PRK08589, short chain dehydrogenase; Val	4e-10
cd08930	250	cd08930, SDR_c8, classical (c) SDR, subgroup 8	4e-10
cd05358	253	cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc	5e-10
PRK07063	260	PRK07063, PRK07063, short chain dehydrogenase; Pro	5e-10
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	6e-10
cd05364	253	cd05364, SDR_c11, classical (c) SDR, subgroup 11	9e-10
PRK07062	265	PRK07062, PRK07062, short chain dehydrogenase; Pro	1e-09
cd08942	250	cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy	1e-09
PRK12429	258	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas	1e-09
PRK07775	274	PRK07775, PRK07775, short chain dehydrogenase; Pro	1e-09
PRK08945	247	PRK08945, PRK08945, putative oxoacyl-(acyl carrier	1e-09
TIGR04316	250	TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben	2e-09
PRK07326	237	PRK07326, PRK07326, short chain dehydrogenase; Pro	2e-09
cd05357	234	cd05357, PR_SDR_c, pteridine reductase (PR), class	3e-09
cd05327	269	cd05327, retinol-DH_like_SDR_c_like, retinol dehyd	4e-09
PRK12829	264	PRK12829, PRK12829, short chain dehydrogenase; Pro	4e-09
cd08935	271	cd08935, mannonate_red_SDR_c, putative D-mannonate	4e-09
PRK12745	256	PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote	5e-09
cd08944	246	cd08944, SDR_c12, classical (c) SDR, subgroup 12	6e-09
TIGR01963	255	TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase	6e-09
PRK06841	255	PRK06841, PRK06841, short chain dehydrogenase; Pro	6e-09
PRK08226	263	PRK08226, PRK08226, short chain dehydrogenase; Pro	9e-09
PRK07576	264	PRK07576, PRK07576, short chain dehydrogenase; Pro	9e-09
PRK06500	249	PRK06500, PRK06500, short chain dehydrogenase; Pro	1e-08
cd09807	274	cd09807, retinol-DH_like_SDR_c, retinol dehydrogen	2e-08
cd05354	235	cd05354, SDR_c7, classical (c) SDR, subgroup 7	2e-08
cd08934	243	cd08934, CAD_SDR_c, clavulanic acid dehydrogenase	2e-08
cd05343	250	cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c	2e-08
PRK12384	259	PRK12384, PRK12384, sorbitol-6-phosphate dehydroge	2e-08
PRK06181	263	PRK06181, PRK06181, short chain dehydrogenase; Pro	3e-08
PRK09072	263	PRK09072, PRK09072, short chain dehydrogenase; Pro	3e-08
PRK08264	238	PRK08264, PRK08264, short chain dehydrogenase; Val	3e-08
cd05345	248	cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl	4e-08
PRK06949	258	PRK06949, PRK06949, short chain dehydrogenase; Pro	4e-08
cd05350	239	cd05350, SDR_c6, classical (c) SDR, subgroup 6	5e-08
PRK08220	252	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy	7e-08
PRK08063	250	PRK08063, PRK08063, enoyl-(acyl carrier protein) r	8e-08
cd05337	255	cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl	8e-08
cd05360	233	cd05360, SDR_c3, classical (c) SDR, subgroup 3	9e-08
PRK09186	256	PRK09186, PRK09186, flagellin modification protein	1e-07
cd05363	254	cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH),	1e-07
PRK07666	239	PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-07
cd05366	257	cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol	1e-07
PRK06701	290	PRK06701, PRK06701, short chain dehydrogenase; Pro	1e-07
PRK06935	258	PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog	2e-07
PRK07478	254	PRK07478, PRK07478, short chain dehydrogenase; Pro	2e-07
PRK12936	245	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote	2e-07
COG3967	245	COG3967, DltE, Short-chain dehydrogenase involved	2e-07
PRK07523	255	PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro	3e-07
PRK08085	254	PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro	3e-07
PRK08213	259	PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro	3e-07
PRK06124	256	PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro	4e-07
PRK06194	287	PRK06194, PRK06194, hypothetical protein; Provisio	4e-07
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	4e-07
PRK12937	245	PRK12937, PRK12937, short chain dehydrogenase; Pro	5e-07
PRK07774	250	PRK07774, PRK07774, short chain dehydrogenase; Pro	5e-07
PRK13394	262	PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas	5e-07
PRK07806	248	PRK07806, PRK07806, short chain dehydrogenase; Pro	6e-07
PRK09242	257	PRK09242, PRK09242, tropinone reductase; Provision	6e-07
cd05359	242	cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c	7e-07
PRK05855	582	PRK05855, PRK05855, short chain dehydrogenase; Val	9e-07
cd05326	249	cd05326, secoisolariciresinol-DH_like_SDR_c, secoi	1e-06
PRK06113	255	PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro	1e-06
PRK08643	256	PRK08643, PRK08643, acetoin reductase; Validated	1e-06
PRK12746	254	PRK12746, PRK12746, short chain dehydrogenase; Pro	2e-06
cd05351	244	cd05351, XR_like_SDR_c, xylulose reductase-like, c	2e-06
cd08929	226	cd08929, SDR_c4, classical (c) SDR, subgroup 4	2e-06
PRK06077	252	PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-06
cd08943	250	cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al	2e-06
PRK12935	247	PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro	3e-06
cd05356	239	cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst	3e-06
PRK07454	241	PRK07454, PRK07454, short chain dehydrogenase; Pro	3e-06
cd05371	252	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr	3e-06
cd05331	244	cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz	4e-06
PRK06182	273	PRK06182, PRK06182, short chain dehydrogenase; Val	4e-06
PRK06125	259	PRK06125, PRK06125, short chain dehydrogenase; Pro	4e-06
cd05367	241	cd05367, SPR-like_SDR_c, sepiapterin reductase (SP	4e-06
cd08936	256	cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re	4e-06
cd08940	258	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge	4e-06
PRK06138	252	PRK06138, PRK06138, short chain dehydrogenase; Pro	4e-06
TIGR01832	248	TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena	4e-06
PRK06179	270	PRK06179, PRK06179, short chain dehydrogenase; Pro	4e-06
PRK06198	260	PRK06198, PRK06198, short chain dehydrogenase; Pro	5e-06
PRK08277	278	PRK08277, PRK08277, D-mannonate oxidoreductase; Pr	5e-06
cd05338	246	cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena	6e-06
PRK08340	259	PRK08340, PRK08340, glucose-1-dehydrogenase; Provi	6e-06
PRK12828	239	PRK12828, PRK12828, short chain dehydrogenase; Pro	6e-06
cd05323	244	cd05323, ADH_SDR_c_like, insect type alcohol dehyd	7e-06
COG5104	590	COG5104, PRP40, Splicing factor [RNA processing an	8e-06
PRK05872	296	PRK05872, PRK05872, short chain dehydrogenase; Pro	8e-06
PRK07825	273	PRK07825, PRK07825, short chain dehydrogenase; Pro	9e-06
PRK08703	239	PRK08703, PRK08703, short chain dehydrogenase; Pro	1e-05
PRK08936	261	PRK08936, PRK08936, glucose-1-dehydrogenase; Provi	1e-05
PRK08217	253	PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-05
PRK06523	260	PRK06523, PRK06523, short chain dehydrogenase; Pro	1e-05
smart00456	33	smart00456, WW, Domain with 2 conserved Trp (W) re	2e-05
TIGR02632	676	TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate	2e-05
PRK06914	280	PRK06914, PRK06914, short chain dehydrogenase; Pro	2e-05
PRK06463	255	PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-05
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	2e-05
PRK12824	245	PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro	2e-05
cd08951	260	cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13	3e-05
PRK07069	251	PRK07069, PRK07069, short chain dehydrogenase; Val	3e-05
PRK07109	334	PRK07109, PRK07109, short chain dehydrogenase; Pro	3e-05
TIGR02415	254	TIGR02415, 23BDH, acetoin reductases	3e-05
PRK09135	249	PRK09135, PRK09135, pteridine reductase; Provision	3e-05
PRK08628	258	PRK08628, PRK08628, short chain dehydrogenase; Pro	4e-05
cd05330	257	cd05330, cyclohexanol_reductase_SDR_c, cyclohexano	5e-05
PRK08261	450	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein)	6e-05
PRK07831	262	PRK07831, PRK07831, short chain dehydrogenase; Pro	9e-05
PRK08219	227	PRK08219, PRK08219, short chain dehydrogenase; Pro	9e-05
cd08932	223	cd08932, HetN_like_SDR_c, HetN oxidoreductase-like	1e-04
cd09805	281	cd09805, type2_17beta_HSD-like_SDR_c, human 17beta	1e-04
cd05329	251	cd05329, TR_SDR_c, tropinone reductase-I and II (T	2e-04
PRK08339	263	PRK08339, PRK08339, short chain dehydrogenase; Pro	2e-04
PRK07985	294	PRK07985, PRK07985, oxidoreductase; Provisional	2e-04
PRK06128	300	PRK06128, PRK06128, oxidoreductase; Provisional	2e-04
PRK12859	256	PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-prote	2e-04
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	3e-04
PRK07097	265	PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro	3e-04
PRK05867	253	PRK05867, PRK05867, short chain dehydrogenase; Pro	3e-04
PRK07060	245	PRK07060, PRK07060, short chain dehydrogenase; Pro	3e-04
cd05341	247	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta	4e-04
PRK06398	258	PRK06398, PRK06398, aldose dehydrogenase; Validate	5e-04
cd00201	31	cd00201, WW, Two conserved tryptophans domain; als	6e-04
cd08945	258	cd08945, PKR_SDR_c, Polyketide ketoreductase, clas	6e-04
PRK12823	260	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1	6e-04
cd01078	194	cd01078, NAD_bind_H4MPT_DH, NADP binding domain of	8e-04
PRK08993	253	PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrog	8e-04
PRK07832	272	PRK07832, PRK07832, short chain dehydrogenase; Pro	0.001
cd08937	256	cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa	0.001
PRK05993	277	PRK05993, PRK05993, short chain dehydrogenase; Pro	0.001
COG5322	351	COG5322, COG5322, Predicted dehydrogenase [General	0.001
PRK08251	248	PRK08251, PRK08251, short chain dehydrogenase; Pro	0.002
TIGR03971	265	TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil	0.002
cd05368	241	cd05368, DHRS6_like_SDR_c, human DHRS6-like, class	0.002
PRK05650	270	PRK05650, PRK05650, short chain dehydrogenase; Pro	0.002
PRK06123	248	PRK06123, PRK06123, short chain dehydrogenase; Pro	0.002
PRK08265	261	PRK08265, PRK08265, short chain dehydrogenase; Pro	0.002
PRK12743	256	PRK12743, PRK12743, oxidoreductase; Provisional	0.002
PRK08263	275	PRK08263, PRK08263, short chain dehydrogenase; Pro	0.002
pfam00397	30	pfam00397, WW, WW domain	0.003
cd08953	436	cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup	0.003
cd05274	375	cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt	0.003
TIGR03206	250	TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy	0.003
cd09763	265	cd09763, DHRS1-like_SDR_c, human dehydrogenase/red	0.003
cd05349	246	cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl	0.004
cd05373	238	cd05373, SDR_c10, classical (c) SDR, subgroup 10	0.004
PRK07577	234	PRK07577, PRK07577, short chain dehydrogenase; Pro	0.004

>gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs

 Score =  168 bits (427), Expect = 2e-50
 Identities = 71/126 (56%), Positives = 92/126 (73%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            I+TGAN+GIGFETARS ALHG  VILACR++ +A+ A+S+IL E   A+  AM L+L  
Sbjct: 4   IIITGANSGIGFETARSFALHGAHVILACRNMSRASAAVSRILEEWHKARVEAMTLDLAS 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA 245
           L+SV++FAE ++ K   L++LV NA VF L ++ TEDG ETTFQVNHL HFYL   LE+ 
Sbjct: 64  LRSVQRFAEAFKAKNSPLHVLVCNAAVFALPWTLTEDGLETTFQVNHLGHFYLVQLLEDV 123

Query: 246 LIKGAK 251
           L + A 
Sbjct: 124 LRRSAP 129

Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284

>gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

 Score =  162 bits (413), Expect = 2e-48
 Identities = 55/121 (45%), Positives = 78/121 (64%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            ++TGAN+GIG ETAR LA  G  VI+ACR+ +K  +A ++I  E  +A+   ++L+L  
Sbjct: 4   VVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLDLSS 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA 245
           L SV++FAEE+  +F  L+IL+ NAG+       T+DGFE  F VN+L HF LT  L   
Sbjct: 64  LASVRQFAEEFLARFPRLDILINNAGIMAPPRRLTKDGFELQFAVNYLGHFLLTNLLLPV 123

Query: 246 L 246
           L
Sbjct: 124 L 124

Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269

>gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional

 Score =  136 bits (345), Expect = 5e-38
 Identities = 52/117 (44%), Positives = 69/117 (58%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGANTG+G+ETA +LA  G  V+LA R+LDK   A ++I    P A     EL+L  
Sbjct: 19  AVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS 78

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQL 242
           L SV+  A+  +  +  +++L+ NAGV       T DGFE  F  NHL HF LT  L
Sbjct: 79  LASVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLL 135

Length = 306

>gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs

 Score =  126 bits (319), Expect = 2e-34
 Identities = 60/124 (48%), Positives = 79/124 (63%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           I+TGANTGIG ETAR LA  G RVI+ACR + K  +A ++I  +  + + I   L+L  L
Sbjct: 5   IITGANTGIGKETARELARRGARVIMACRDMAKCEEAAAEIRRDTLNHEVIVRHLDLASL 64

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           KS++ FA E+  +   L++L+ NAGV    +S TEDGFE  F VNHL HF LT  L + L
Sbjct: 65  KSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSKTEDGFEMQFGVNHLGHFLLTNLLLDLL 124

Query: 247 IKGA 250
            K A
Sbjct: 125 KKSA 128

Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274

>gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional

 Score =  121 bits (306), Expect = 3e-32
 Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 6/142 (4%)

Query: 109 STKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL 168
           ++ A ++L G DLS   AIVTG  +G+G ET R+LA  G  VI+  R  D A +A++ I 
Sbjct: 12  ASTAEEVLAGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI- 70

Query: 169 TEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTF 228
            +          L+L  L+SV+ FAE +    R ++IL+ NAGV     +   DG+E  F
Sbjct: 71  -DGVEVV----MLDLADLESVRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQF 125

Query: 229 QVNHLAHFYLTLQLENALIKGA 250
             NHL HF L   L  AL  GA
Sbjct: 126 ATNHLGHFALVNLLWPALAAGA 147

Length = 315

>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs

 Score =  103 bits (260), Expect = 2e-26
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 13/152 (8%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA++GIG   AR LA  G +V+LA R+ +   +       E      +A++ ++  
Sbjct: 1   ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALAEL---AAIEALGGNAVAVQADVSD 57

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYLTLQLE 243
            + V+   EE  ++F  L+ILV NAG+   G     T++ ++    VN    F LT    
Sbjct: 58  EEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAAL 117

Query: 244 NALIKGAK--------LFARQQGAATSIYCAT 267
             + K           +   +     + Y A+
Sbjct: 118 PHMKKQGGGRIVNISSVAGLRPLPGQAAYAAS 149

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234

>gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs

 Score =  102 bits (255), Expect = 5e-25
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%)

Query: 125 NAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNL 183
             ++TGA++G+G   A++LA  G   V++ACR   KA  A  ++   K S     +  +L
Sbjct: 3   TVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGMPKDSYSV--LHCDL 60

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLT 239
             L SV++F + +++  R L+ LV NA V+         T DGFE T  VNHL HF LT
Sbjct: 61  ASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGVNHLGHFLLT 119

Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311

>gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional

 Score =  100 bits (252), Expect = 2e-24
 Identities = 51/125 (40%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
            DLS   A+VTGA+ G+G   AR LA  G  VIL  R+  K   A++ I T  P A+   
Sbjct: 10  PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSL 69

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH-TEDGFETTFQVNHLAHFY 237
             L+L  L SV    E+ + + R +++L+ NAGV        T DGFE  F  NHL HF 
Sbjct: 70  RALDLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFA 129

Query: 238 LTLQL 242
           LT  L
Sbjct: 130 LTAHL 134

Length = 313

>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 93.0 bits (231), Expect = 5e-22
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 10/158 (6%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN-DAISKILTEKPSAQCIA 178
           DLS   A+VTGA++GIG   AR+LA  G RV++A R  ++   +A++  + E    +  A
Sbjct: 2   DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAA 61

Query: 179 MELNL-CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH---TEDGFETTFQVNHLA 234
           +  ++    +SV+      +++F  ++ILV NAG+ G        TE+ ++    VN L 
Sbjct: 62  VAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLG 121

Query: 235 HFYLT-----LQLENALIKGAKLFARQQGAATSIYCAT 267
            F LT     L  +  ++  + +         + Y A+
Sbjct: 122 AFLLTRAALPLMKKQRIVNISSVAGLGGPPGQAAYAAS 159

Length = 251

>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs

 Score = 90.4 bits (225), Expect = 2e-21
 Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 125 NAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNL 183
            A+VTGAN GIGFE  R LA  G   VIL  R +++   A+ K+  E  S +    +L++
Sbjct: 2   VALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFH--QLDV 59

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF---SHTEDGFETTFQVNHLAHFYLTL 240
               S++  A+  ++K+  L+ILV NAG+   GF   + T +    T + N    F+ T+
Sbjct: 60  TDDASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTN----FFGTV 115

Query: 241 QLENALI 247
            +  AL+
Sbjct: 116 DVTQALL 122

PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225

>gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase

 Score = 87.5 bits (217), Expect = 1e-19
 Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 6/120 (5%)

Query: 127 IVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           I+TGA++G+G  TA++LA  G   V++ACR   KA  A       K S     M L+L  
Sbjct: 1   IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDS--YTVMHLDLAS 58

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQL 242
           L SV++F + +++  R L++LV NA V+       + T DGFE +   NHL HF L+  L
Sbjct: 59  LDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLL 118

Length = 308

>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            I+TGA++G+G   A++LA  G  VI+ACR+L KA  A  ++    P      + ++L  
Sbjct: 9   VIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL--GIPPDSYTIIHIDLGD 66

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVNHLAHFYL-TLQ 241
           L SV++F ++++   + L+ LV NA V+         +  G+E +   NHL HF L  L 
Sbjct: 67  LDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLL 126

Query: 242 LEN 244
           LE+
Sbjct: 127 LED 129

Length = 322

>gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs

 Score = 84.2 bits (208), Expect = 1e-18
 Identities = 33/55 (60%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 256 QQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ 310
           QQGAAT++YCAT+ +L   + G YFNNC RC PS  AQ EA A +LW+LSE +IQ
Sbjct: 230 QQGAATTVYCATAPELE-GLGGMYFNNCFRCLPSPEAQSEATAQQLWELSERLIQ 283

Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284

>gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase

 Score = 80.7 bits (199), Expect = 3e-17
 Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 7/124 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
            I+TGA++G+G   A++LA  G   VI+ACR   KA  A   +   K S     M L+L 
Sbjct: 6   VIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTI--MHLDLG 63

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH---TEDGFETTFQVNHLAHFYLT-L 240
            L SV++F +++++  R L+ LV NA V+         T DGFE +   NHL HF L  L
Sbjct: 64  SLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNL 123

Query: 241 QLEN 244
            L++
Sbjct: 124 LLDD 127

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314

>gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs

 Score = 78.4 bits (194), Expect = 7e-17
 Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA+ GIG   A  LA  G +V +  RS + A + + +I  +       A+E ++  
Sbjct: 3   ALVTGASRGIGRAIALRLAAEGAKVAVTDRSEEAAAETVEEI--KALGGNAAALEADVSD 60

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYLTLQLE 243
            ++V+   E+ + +F  ++ILV NAG+         +E+ ++    VN    F +T  + 
Sbjct: 61  REAVEALVEKVEAEFGPVDILVNNAGITRDNLLMRMSEEDWDAVINVNLTGVFNVTQAVI 120

Query: 244 NALIK 248
            A+IK
Sbjct: 121 RAMIK 125

This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240

>gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 41/122 (33%), Positives = 65/122 (53%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           ++TGAN+GIG   A ++A  G  V + CR+  +A +A  +I TE  +       +++   
Sbjct: 5   LITGANSGIGKAAALAIAKRGGTVHMVCRNQTRAEEARKEIETESGNQNIFLHIVDMSDP 64

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 246
           K V +F EE++++ + L++L+ NAG        TEDG E  F  N L  + LT  L   L
Sbjct: 65  KQVWEFVEEFKEEGKKLHVLINNAGCMVNKRELTEDGLEKNFATNTLGTYILTTHLIPVL 124

Query: 247 IK 248
            K
Sbjct: 125 EK 126

Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255

>gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs

 Score = 77.2 bits (191), Expect = 2e-16
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           I+TGA++GIG E A  LA  G R++L+ R  ++  +  S+   E  +     + L++  L
Sbjct: 7   IITGASSGIGEELAYHLARLGARLVLSARREERLEEVKSE-CLELGAPSPHVVPLDMSDL 65

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYLTLQLEN 244
           +  ++  EE  K F  L+IL+ NAG+      H  + D      +VN+     LT     
Sbjct: 66  EDAEQVVEEALKLFGGLDILINNAGISMRSLFHDTSIDVDRKIMEVNYFGPVALTKAALP 125

Query: 245 ALIK 248
            LI+
Sbjct: 126 HLIE 129

Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 26/164 (15%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A++TGA++GIG  TAR+LA  G +V+LA R  ++    +  +  E  +   +A+ 
Sbjct: 4   LKGKVALITGASSGIGEATARALAEAGAKVVLAARREER----LEALADEIGAGAALALA 59

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYL 238
           L++    +V+   E   ++F  ++ILV NAG+           D ++     N       
Sbjct: 60  LDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNG 119

Query: 239 TLQLENALIKGAKLFARQQG--------AAT------SIYCATS 268
           T     A++ G  +  R+ G        A        ++Y AT 
Sbjct: 120 T----RAVLPG--MVERKSGHIINLGSIAGRYPYPGGAVYGATK 157

Length = 246

>gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]

 Score = 75.7 bits (187), Expect = 7e-16
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            +    A++TGA++GIG E A+ LA  G  +IL  R  DK  +A++K L +K   +   +
Sbjct: 3   PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKL-EALAKELEDKTGVEVEVI 61

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL--GFS-HTEDGFETTFQVN----- 231
             +L   +++++  +E +++   +++LV NAG FG    F   + D  E   Q+N     
Sbjct: 62  PADLSDPEALERLEDELKERGGPIDVLVNNAG-FGTFGPFLELSLDEEEEMIQLNILALT 120

Query: 232 HLAHFYLTLQLEN---ALIKGAKLFARQQGAATSIYCAT 267
            L    L   +E     +I              ++Y AT
Sbjct: 121 RLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSAT 159

Length = 265

>gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 42/163 (25%)

Query: 126 AIVTGANTGIGFETA-RSLAL----HGCRVILACRSLDKANDAISKILTEKPSA--QCIA 178
            +VTGAN+G+G     R LA         +ILACR+L +A  A   +L   P A      
Sbjct: 4   VLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLASHPDARVVFDY 63

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV-----------------FGLGF---- 217
           + ++L  + SV   A+E +K++  L+ L LNAG+                   L      
Sbjct: 64  VLVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMPNPGIDWIGAIKEVLTNPLFAVTNP 123

Query: 218 --------------SHTEDGFETTFQVNHLAHFYLTLQLENAL 246
                           TEDG    FQ N   H+YL  +LE  L
Sbjct: 124 TYKIQAEGLLSQGDKATEDGLGEVFQTNVFGHYYLIRELEPLL 166

3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290

>gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR

 Score = 72.6 bits (179), Expect = 7e-15
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A +TG  TGIG   A++ A  G  V +A R  +    A  +I +     +   ++ ++  
Sbjct: 6   AFITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEI-SSATGGRAHPIQCDVRD 64

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNA-GVFGLGFSH-TEDGFETTFQVNHLAHFYLTLQLE 243
            ++V+   +E  K+F  ++IL+ NA G F       + +GF+T   ++    F  T  + 
Sbjct: 65  PEAVEAAVDETLKEFGKIDILINNAAGNFLAPAESLSPNGFKTVIDIDLNGTFNTTKAVG 124

Query: 244 NALIKGAKLFARQQGAATSI 263
             LI+      +  G+  +I
Sbjct: 125 KRLIEA-----KHGGSILNI 139

TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           RDL    A+VTGA  GIG   A  LA  G  VI+     D A      +      A+  A
Sbjct: 2   RDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKAR--A 59

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHF 236
            ++++    ++K       + F  L+ILV NAG+F L       ++ +E    VN L   
Sbjct: 60  RQVDVRDRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVN-LTGT 118

Query: 237 YLTLQL 242
           +L  Q 
Sbjct: 119 FLLTQA 124

Length = 251

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 71.3 bits (176), Expect = 2e-14
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A+VTGA+ GIG   A  LA  G +V++   + + A    +++      A+ +  
Sbjct: 2   SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV- 60

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFY 237
             ++    +V+   E   + F +L+ILV NAG+         +E+ ++    VN L   +
Sbjct: 61  -FDVSDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVN-LTGTF 118

Query: 238 LTLQ 241
             ++
Sbjct: 119 NVVR 122

Length = 246

>gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 3/116 (2%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA+ GIG   A  LA  G +VI+  RS ++  + + + L      + + +  ++  
Sbjct: 1   ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYG-VKALGVVCDVSD 59

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLT 239
            + VK   EE +++   ++ILV NAG+    L     E+ ++     N    F LT
Sbjct: 60  REDVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLT 115

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs

 Score = 69.7 bits (171), Expect = 9e-14
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A+VTGA+ GIGF  A  LA  G  +++  R+ +KA +A   I  EK   +  A 
Sbjct: 2   SLKGKVALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLI--EKEGVEATAF 59

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH-----TEDGFETTFQVNHLA 234
             ++   +++K   E  ++ F  ++ILV NA   G+   H      E  +     VN   
Sbjct: 60  TCDVSDEEAIKAAVEAIEEDFGKIDILVNNA---GIIRRHPAEEFPEAEWRDVIDVNLNG 116

Query: 235 HFYLTLQLENALIK--GAK------LFARQQGAATSIYCAT 267
            F+++  +   +IK    K      L +   G     Y A+
Sbjct: 117 VFFVSQAVARHMIKQGHGKIINICSLLSELGGPPVPAYAAS 157

Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 16/158 (10%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A++TGA +GIG   A      G RV++A     +A  A  +I         IA+ 
Sbjct: 4   LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVS 58

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
           L++ R  S+ +      ++F  ++IL  NA +F +      + D ++  F VN    F+L
Sbjct: 59  LDVTRQDSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFL 118

Query: 239 TLQLENALI---KGAKL--FARQQG----AATSIYCAT 267
              +   ++   +G K+   A Q G    A  S YCAT
Sbjct: 119 MQAVARHMVEQGRGGKIINMASQAGRRGEALVSHYCAT 156

Length = 257

>gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
            A+VT A++GIG   AR+LA  G RV +  R+ +    A S++      A  +A+  +L 
Sbjct: 3   VALVTAASSGIGLAIARALAREGARVAICARNRENLERAASELR--AGGAGVLAVVADLT 60

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAG------VFGLGFSHTEDGFETTFQVNHLAHFYL 238
             + + +  E+    F  ++ILV NAG         L    T++ +   F +  L+   +
Sbjct: 61  DPEDIDRLVEKAGDAFGRVDILVNNAGGPPPGPFAEL----TDEDWLEAFDLKLLSVIRI 116

Query: 239 T 239
            
Sbjct: 117 V 117

This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
            ++TGA+ GIG E  R L   G   VI  CR    A + ++ +         + +++   
Sbjct: 1   VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAATE-LAALGASHSRLHILELDVTDE 59

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLT 239
             +S +  AE        L++L+ NAG+    G       +     FQVN L    LT
Sbjct: 60  IAESAEAVAERL--GDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLGPLLLT 115

Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 31/160 (19%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            ++TG ++GIG   A +LA  G RVI   R+ DK        L E  +     +EL++  
Sbjct: 3   VLITGCSSGIGLALALALAAQGYRVIATARNPDKLES-----LGELLNDNLEVLELDVTD 57

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAG--VFGLGFSHTEDGFETTFQVNHLAHFYLTLQLE 243
            +S+K   +E  ++F  +++LV NAG  +FG     + +     F+VN     +  L   
Sbjct: 58  EESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELFEVN----VFGPL--- 110

Query: 244 NALIKGAKLFARQQGAAT----------------SIYCAT 267
             + +      R+QG+                    YCA+
Sbjct: 111 -RVTRAFLPLMRKQGSGRIVNVSSVAGLVPTPFLGPYCAS 149

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A+VTGA+ GIG   A  LA  G  V++   S +   +A+   +      + +A+
Sbjct: 2   SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGAL-GGKALAV 60

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFY 237
           + ++   +SV++  +E + +F  ++ILV NAG+          E+ ++     N    F 
Sbjct: 61  QGDVSDAESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFN 120

Query: 238 LTLQLENALIKG 249
           LT  +   ++K 
Sbjct: 121 LTKAVARPMMKQ 132

Length = 248

>gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL+   A+VTGA+ GIG   A+ LA  G  VI++ R LD        I+     A+ +A 
Sbjct: 5   DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA- 63

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAHF 236
             ++  ++ +       +++   L+ILV NA     FG         F+ T  VN   +F
Sbjct: 64  -CHIGEMEQIDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYF 122

Query: 237 YLTLQLENALIKGAKLFARQQGAA 260
           +++       ++  KL   Q G +
Sbjct: 123 FMS-------VEAGKLMKEQGGGS 139

Length = 252

>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 18 PPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          PPGWEER   DG VYY NH T+ TQW  PR
Sbjct: 1  PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30

Length = 31

>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues

 Score = 59.2 bits (144), Expect = 5e-12
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          LPPGWEER   DG  YY NH T+ TQW  PR
Sbjct: 2  LPPGWEERKDPDGRPYYYNHETKETQWEKPR 32

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

>gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs

 Score = 64.5 bits (157), Expect = 5e-12
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
            AIVTG   GIG   A +LA  G  V++A    + A    + I  ++   Q I +E N+ 
Sbjct: 1   VAIVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAI--QQAGGQAIGLECNVT 58

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG---FSHTEDGFETTFQVNHLAHFYLT 239
             + ++   +    +F  + ILV NAG  G        TE+ FE  F++N  + F L+
Sbjct: 59  SEQDLEAVVKATVSQFGGITILVNNAGGGGPKPFDMPMTEEDFEWAFKLNLFSAFRLS 116

This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%)

Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
             ++TGA++GIG  TAR  A  G ++IL  R  ++    ++  L  K   + + ++L++ 
Sbjct: 2   TVLITGASSGIGEATARRFAKAGAKLILTGRRAERLQ-ELADELGAKFPVKVLPLQLDVS 60

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFETTFQVNHLAHFYLTL 240
             +S++   E   ++FR ++ILV NAG   LG         + +ET    N      +T 
Sbjct: 61  DRESIEAALENLPEEFRDIDILVNNAG-LALGLDPAQEADLEDWETMIDTNVKGLLNVTR 119

Query: 241 QLENALIKGAKLFARQQG--------------AATSIYCAT 267
            +   +I      AR QG              A  ++YCAT
Sbjct: 120 LILPIMI------ARNQGHIINLGSIAGRYPYAGGNVYCAT 154

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 38/170 (22%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS---LDKANDAISKILTEKPSAQC 176
            L+    ++TG  +GIG   AR     G  VI+  R    L +A   +  I T       
Sbjct: 2   KLTGNTVLITGGTSGIGLALARKFLEAGNTVIITGRREERLAEAKKELPNIHT------- 54

Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV-----FGLGFSHTEDGFETTFQVN 231
             + L++   +SV+  AE    ++ +L+IL+ NAG+          S  +   +T    N
Sbjct: 55  --IVLDVGDAESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASDLDK-ADTEIDTN 111

Query: 232 HLAHFYLTLQLENALIKGAKLFARQQG--------------AATSIYCAT 267
            +    L       L K      + +               AA  +YCAT
Sbjct: 112 LIGPIRLIKAFLPHLKK------QPEATIVNVSSGLAFVPMAANPVYCAT 155

Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228

>gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 63.7 bits (156), Expect = 9e-12
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
             L    AIVTGA++GIG   AR  A  G RV++  R+ + A    ++I       + IA
Sbjct: 1   MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEI---LAGGRAIA 57

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG---VFGLGFSHTEDGFETTFQVNHLAH 235
           +  ++     V+       ++F S++ILV NAG     G      E  F+  F VN  + 
Sbjct: 58  VAADVSDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSP 117

Query: 236 FYLT 239
           +  T
Sbjct: 118 YLWT 121

Length = 251

>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 63.7 bits (156), Expect = 9e-12
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL-TEKPSAQCIA 178
            L    A+VTGA  G+G   A  LA  G  V++  RS ++A + + + +      AQ + 
Sbjct: 3   SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQ 62

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHF 236
            ++      +++       ++F  ++ILV NAG+F        ++D ++    VN    F
Sbjct: 63  ADVT--DKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVF 120

Query: 237 YLT 239
           +L 
Sbjct: 121 HLL 123

Length = 249

>gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 3/131 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    AIVTGA+ GIG   A  LA  G +V++A    ++A   + + + E+     IA+
Sbjct: 2   KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-GGDAIAV 60

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
           + ++   + V+   E+  +KF  ++ILV NAG+  FGL    T++ ++    VN      
Sbjct: 61  KADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVML 120

Query: 238 LTLQLENALIK 248
           LT      +IK
Sbjct: 121 LTRYALPYMIK 131

Length = 247

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGCR-VILACRSL--DKANDAISKILTEKPSAQCIAMELN 182
            ++TG   G+G   AR LA  G R ++L  R      A + ++++  E   A+      +
Sbjct: 3   VLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAEL--EALGAEVTVAACD 60

Query: 183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSH-TEDGFETTFQVNHLAHFYLT 239
           +    ++             L+ +V NAGV   G     T + FE          + L 
Sbjct: 61  VADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWNLH 119

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAIS--KILTEKPSAQCIAMELNL 183
            ++TG  +GIG   A   A  G +V++    LD              K   +    + ++
Sbjct: 2   VLITGGGSGIGRLLALEFAKRGAKVVI----LDINEKGAEETANNVRKAGGKVHYYKCDV 57

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLT 239
            + + V + A++ +K+   + IL+ NAGV          ++  E TF+VN LAHF+ T
Sbjct: 58  SKREEVYEAAKKIKKEVGDVTILINNAGVVSGKKLLELPDEEIEKTFEVNTLAHFWTT 115

17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    AIVTG + GIG   AR+LA  G  V +   S  +A +   + L +K   +  A 
Sbjct: 5   SLKGKVAIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEE-LAKKYGVKTKAY 63

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV-FGLGF-SHTEDGFETTFQVNHLAHFY 237
           + ++   +SV+K  ++ QK F  ++IL+ NAG+        +T + +     VN    F 
Sbjct: 64  KCDVSSQESVEKTFKQIQKDFGKIDILIANAGITVHKPALDYTYEQWNKVIDVNLNGVFN 123

NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252

>gnl|CDD|215899 pfam00397, WW, WW domain

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 19/30 (63%), Positives = 19/30 (63%)

Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          LPPGWEER   DG  YY NH T  TQW  P
Sbjct: 1  LPPGWEERTDTDGRPYYYNHNTGETQWERP 30

The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Length = 30

>gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L+   A+VTGA  G+G   A +LA  G  V        +A +  + +  E    +  A+ 
Sbjct: 5   LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAAL--EAAGGRAHAIA 62

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVN 231
            +L    SV++F +        L+ LV NAG+           D ++    VN
Sbjct: 63  ADLADPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVN 115

Length = 250

>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
             DL+    ++TGA++GIG   A   A  G  V+   R  D  +    +I      A  +
Sbjct: 35  PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDA--M 92

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG 211
           A+  +L  L +V     + +K+   ++IL+ NAG
Sbjct: 93  AVPCDLSDLDAVDALVADVEKRIGGVDILINNAG 126

Length = 293

>gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 28/169 (16%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAM 179
           L+   A+VTGA+ GIG   A+ LA  G  V++    S   A + +++I      A  IA+
Sbjct: 1   LAGKVALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIEAAGGKA--IAV 58

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFY 237
           + ++     V +  +  +K F  ++ILV NAGV         +E+ F+  F VN      
Sbjct: 59  QADVSDPSQVARLFDAAEKAFGGVDILVNNAGVMLKKPIAETSEEEFDRMFTVN------ 112

Query: 238 LTLQLENALIKGAKLFARQQGAATS------IYCATSL-DLSLPVSGSY 279
                     KGA  F  Q+ A         I  ++SL     P  G+Y
Sbjct: 113 ---------TKGA-FFVLQEAAKRLRDGGRIINISSSLTAAYTPNYGAY 151

1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAM 179
           L++   +VTGA+ GIG E A + A +G  VIL  R+ +K       I  E     Q   +
Sbjct: 2   LNDRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHINEEGGRQPQWFIL 61

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAH 235
           +L  C  ++ ++ A+     +  L+ ++ NAG+ G    L        ++   QVN  A 
Sbjct: 62  DLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSE-QNPQVWQDVXQVNVNAT 120

Query: 236 FYLT 239
           F LT
Sbjct: 121 FMLT 124

Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236

>gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 16/152 (10%)

Query: 93  KEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVIL 152
            +    P    + Y  S K    L G+      A++TG ++GIG   A + A  G  V +
Sbjct: 5   AKMDPLPDFGEKSYKGSGK----LKGK-----KALITGGDSGIGRAVAIAFAREGADVAI 55

Query: 153 ACRS--LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNA 210
                  D A +  +K L E+   +C+ +  +L      +   +E  K+F  L+ILV NA
Sbjct: 56  NYLPEEEDDAEE--TKKLIEEEGRKCLLIPGDLGDESFCRDLVKEVVKEFGKLDILVNNA 113

Query: 211 GVFGLGFS---HTEDGFETTFQVNHLAHFYLT 239
                  S    T +  E TF+ N  + FYLT
Sbjct: 114 AYQHPQESIEDITTEQLEKTFRTNIFSMFYLT 145

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270

>gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA----QCIAMEL 181
            ++TG ++GIG   A+ L   G  VI+  RS  K  +A+ +I  E  ++      I+   
Sbjct: 4   VLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAEANASGQKVSYISA-- 61

Query: 182 NLCRLKSVKKFAEEYQKKFRSLNILVLNAG--VFGLGFSHTEDGFETTFQVNHLAHFYLT 239
           +L   + V++   +  +K    +++V  AG  + GL    T + FE    VN+     + 
Sbjct: 62  DLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGSLNVA 121

These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239

>gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L N  A++TGA+TGIG  +A +LA  G  V+    + +  ++ + KI +    A+  A  
Sbjct: 4   LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAK--AYH 60

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           +++   + VK FA E +++F  +++L  NAGV
Sbjct: 61  VDISDEQQVKDFASEIKEQFGRVDVLFNNAGV 92

Length = 272

>gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 17/148 (11%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            ++TGA   IG    ++L   G R+ILA  +         + LT     + IA+EL++  
Sbjct: 5   ILITGAAGLIGKAFCKALLSAGARLILADINAPALEQL-KEELTNLYKNRVIALELDITS 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAG--VFGLG---FSHTEDGFETTFQVNHLAHFYLTL 240
            +S+K+  E Y +KF  ++IL+ NA       G        + +     VN L   +L  
Sbjct: 64  KESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVN-LGGAFLCS 122

Query: 241 QLENALIKGAKLFARQQGAA----TSIY 264
           Q         KLF +Q   +     SIY
Sbjct: 123 Q------AFIKLFKKQGKGSIINIASIY 144

This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAM 179
           L    A+VTGA++GIG   A  LA  G  V++  RS  D A + + +I  +    + IA+
Sbjct: 1   LKGKVALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEEI--KAVGGKAIAV 58

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFY 237
           + ++ + + V    +   K+F +L+ILV NAG+ G   SH  T + +     VN    F 
Sbjct: 59  QADVSKEEDVVALFQSAIKEFGTLDILVNNAGLQGDASSHEMTLEDWNKVIDVNLTGQFL 118

GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L+   A+VTGA  GIG   AR+ A  G  V LA      A  A + I  +   A+ +A+ 
Sbjct: 5   LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVP 64

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAG--VFGLGFSHTEDGFETTFQVN 231
            ++    SV       ++ F  L++LV NAG  VF    + T++ +   F V+
Sbjct: 65  ADVTDAASVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVD 117

Length = 260

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 5/115 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA  GIG  TA+ LA  G  V+LA    + A  A +++       + + +  ++  
Sbjct: 425 ALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAEL---GGPDRALGVACDVTD 481

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYL 238
             +V+   EE    F  ++I+V NAG+   G     +++ +  +F VN   HF +
Sbjct: 482 EAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLV 536

Length = 681

>gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL-TEKPSAQCIAM 179
           LS   AI+TG+++GIG  TA   A  G R+ L  R  ++  +     L       + + +
Sbjct: 1   LSGKVAIITGSSSGIGAGTAILFARLGARLALTGRDAERLEETRQSCLQAGVSEKKILLV 60

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED--GFETTFQVNHLAHFY 237
             +L   +   +       KF  L+ILV NAG+   G    +D   ++    +N  A  Y
Sbjct: 61  VADLTEEEGQDRIISTTLAKFGRLDILVNNAGILAKGGGEDQDIEEYDKVMNLNLRAVIY 120

Query: 238 LT 239
           LT
Sbjct: 121 LT 122

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253

>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A+VTG ++GIG  T   L   G  V +  R  ++   A +++  + P A+ +A 
Sbjct: 5   QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAA 64

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG 211
             ++     V  FA   + +F  +++LV NAG
Sbjct: 65  RCDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96

Length = 265

>gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            ++    +VTG + GIG   A+     G RVI++ R  +   DA  ++       +CIA+
Sbjct: 3   SVAGKIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADAAEELSA---YGECIAI 59

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV-FGLGF-SHTEDGFETTFQVNHLAHFY 237
             +L   + ++       ++   L++LV NAG  +G    +  E G++    +N  + F+
Sbjct: 60  PADLSSEEGIEALVARVAERSDRLDVLVNNAGATWGAPLEAFPESGWDKVMDINVKSVFF 119

Query: 238 LTLQLENALIKGA 250
           LT  L   L   A
Sbjct: 120 LTQALLPLLRAAA 132

Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A+VTGA +GIG E A +LA  G +V++A  + + A  A   +  +K   + I + 
Sbjct: 2   LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEAL--QKAGGKAIGVA 59

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           +++   +++    +   + F  ++ILV NAG+
Sbjct: 60  MDVTDEEAINAGIDYAVETFGGVDILVNNAGI 91

Length = 258

>gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+V GA++GIG  TA  LA  G  V L  R ++K  + + KI  +   A  +A  L++  
Sbjct: 13  ALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEA--VAFPLDVTD 70

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAG--VFGLGFSHTEDGFETTFQVNHLAHFYLTLQLE 243
             SVK F  + ++    + +LV  AG   FG     + + FE+  Q+    H     +L 
Sbjct: 71  PDSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQI----HLVGANRLA 126

Query: 244 NALIKGAKLFARQQG 258
            A++ G  +  R++G
Sbjct: 127 TAVLPG--MIERRRG 139

Length = 274

>gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAMELNLCRL 186
           VTGA  GIG E A + A HG  VIL  R+ +K      +I     P    I ++L     
Sbjct: 17  VTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATP 76

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFG-LG-FSH-TEDGFETTFQVNHLAHFYLT 239
           ++ ++ A+  +++F  L+ ++ NAG+ G LG       + ++   QVN  A F LT
Sbjct: 77  QNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLT 132

Length = 247

>gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 16/143 (11%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKA---NDAISKILTEKPSAQCIAMELN 182
            +VTGA  GIG+  AR+LA  G RV     ++D+       +   L           +L+
Sbjct: 1   VLVTGAAQGIGYAVARALAEAGARVA----AVDRNFEQLLELVADLRRYGY-PFATYKLD 55

Query: 183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYLTL 240
           +    +V +  +  ++++  +++LV  AG+  LG     +++ ++ TF VN    F ++ 
Sbjct: 56  VADSAAVDEVVQRLEREYGPIDVLVNVAGILRLGAIDSLSDEDWQATFAVNTFGVFNVS- 114

Query: 241 QLENALIKGAKLFARQQGAATSI 263
               A+    K   R+ GA  ++
Sbjct: 115 ---QAVSPRMK--RRRSGAIVTV 132

Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250

>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A++TG + GIGF  A +L   G +V +  R   +  +A +++         + + 
Sbjct: 4   LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAEL---NNKGNVLGLA 60

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            ++     V++  +     F  L++L+ NAGV
Sbjct: 61  ADVRDEADVQRAVDAIVAAFGGLDVLIANAGV 92

Length = 237

>gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTGA   IG   A +LA  G RV++    S  +A     ++         + ++ +L 
Sbjct: 3   ALVTGAAKRIGRAIAEALAAEGYRVVVHYNRSEAEAQRLKDEL--NALRNSAVLVQADLS 60

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYLTLQL 242
              +         + F   ++LV NA  F        +ED +   F +N  A + L    
Sbjct: 61  DFAACADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAELFGINLKAPYLLIQAF 120

Query: 243 ENALIKGAK 251
              L     
Sbjct: 121 ARRLAGSRN 129

Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234

>gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 257 QGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLW 302
           QGA T++Y ATS +L   VSG YF++C     S  A DE LA KLW
Sbjct: 225 QGAQTALYAATSPELEG-VSGKYFSDCKIKMSSSEALDEELAEKLW 269

Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269

>gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           + L     +VTG  +GIG   A + A  G RV +     D +  A++      P A+  A
Sbjct: 7   KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVC----DVSEAALAATAARLPGAKVTA 62

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF---SHTEDGFETTFQVNHLAH 235
              ++     V++  +   ++F  L++LV NAG+ G        T + +E T  VN    
Sbjct: 63  TVADVADPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQ 122

Query: 236 FY 237
           FY
Sbjct: 123 FY 124

Length = 264

>gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 26/150 (17%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L N  A++TG    +G   AR+LA  G +V    R+ +K  D ++K +T     + IA+
Sbjct: 2   SLKNKVAVITGGTGVLGGAMARALAQAGAKVAALGRNQEKG-DKVAKEITALG-GRAIAL 59

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG--------------------VFGLGFSH 219
             ++    S+++  EE   +F +++IL+  AG                     F L    
Sbjct: 60  AADVLDRASLERAREEIVAQFGTVDILINGAGGNHPDATTDPEHYEPETEQNFFDL---- 115

Query: 220 TEDGFETTFQVNHLAHFYLTLQLENALIKG 249
            E+G+E  F +N    F  +      +++ 
Sbjct: 116 DEEGWEFVFDLNLNGSFLPSQVFGKDMLEQ 145

D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271

>gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 25/194 (12%)

Query: 126 AIVTGANTGIGFETARSLALHGCRV-ILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTG   GIG   AR+LA  G  + I      ++      ++       + I    ++ 
Sbjct: 5   ALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRAL--GVEVIFFPADVA 62

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH-------TEDGFETTFQVNHLAHFY 237
            L + +   +  Q  +  ++ LV NAGV   G          T + F+    +N    F+
Sbjct: 63  DLSAHEAMLDAAQAAWGRIDCLVNNAGV---GVKVRGDLLDLTPESFDRVLAINLRGPFF 119

Query: 238 LTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEAL 297
           LT  +   ++   +       +   +    ++ +S P  G Y   C     SKA    ++
Sbjct: 120 LTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS-PNRGEY---CI----SKAGL--SM 169

Query: 298 ATKLW--KLSEEMI 309
           A +L+  +L+EE I
Sbjct: 170 AAQLFAARLAEEGI 183

Length = 256

>gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVTGA  GIG   A  LA  G RV++A      A   +++I     +   +A+ +++  
Sbjct: 6   AIVTGAGAGIGAACAARLAREGARVVVADIDGGAAQAVVAQI-----AGGALALRVDVTD 60

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGL 215
            + V    E   ++F  L++LV NAG   L
Sbjct: 61  EQQVAALFERAVEEFGGLDLLVNNAGAMHL 90

These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246

>gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA +GIG   AR+LA  G  V++     + A  A +K+  +      I +  ++ +
Sbjct: 4   ALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAE-AAAKVAGDA-GGSVIYLPADVTK 61

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
              +         +F  L+ILV NAG+
Sbjct: 62  EDEIADMIAAAAAEFGGLDILVNNAGI 88

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255

>gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS   A+VTG  +GIG   A   A  G RV L  R     ++ ++++  +        +
Sbjct: 12  DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDR-----SEDVAEVAAQLLGGNAKGL 66

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL--GFSHTEDGFETTFQVNHLAHFY 237
             ++   +SV+         F  ++ILV +AGV  L      +E+ ++ T  +N    F 
Sbjct: 67  VCDVSDSQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFL 126

Query: 238 LT 239
           + 
Sbjct: 127 MA 128

Length = 255

>gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional

 Score = 55.2 bits (133), Expect = 9e-09
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A++TGA  GIG   AR  A HG  +IL   S  +      ++       +C A+  ++  
Sbjct: 9   ALITGALQGIGEGIARVFARHGANLILLDIS-PEIEKLADELCG--RGHRCTAVVADVRD 65

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 231
             SV    +  ++K   ++ILV NAGV  LG     +++  +    +N
Sbjct: 66  PASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDIN 113

Length = 263

>gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 16/132 (12%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           D +  N +V G  +GI    A++ A  G  V +A RS +K + A++++    P    + +
Sbjct: 6   DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEG--LGV 63

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLN-AGVF---GLGFSHTEDGFET--------T 227
             ++    +V+    +   +F  +++LV   AG F     G S   +GF+T        T
Sbjct: 64  SADVRDYAAVEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMS--ANGFKTVVDIDLLGT 121

Query: 228 FQVNHLAHFYLT 239
           F V   A+  L 
Sbjct: 122 FNVLKAAYPLLR 133

Length = 264

>gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACR---SLDKANDAI-SKILTEKPSAQC 176
           L    A++TG  +GIG ETAR     G RV +  R   SL+ A   +    L  +  A  
Sbjct: 4   LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGD 63

Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLA 234
           +A         + K  A+   + F  L+ + +NAGV  F       E  F+ +F  N   
Sbjct: 64  VA---------AQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKG 114

Query: 235 HFYLTLQLENALIKGAKLF------ARQQGAATSIYCAT 267
            ++L   L   L   A +       A      +S+Y A+
Sbjct: 115 PYFLIQALLPLLANPASIVLNGSINAHIGMPNSSVYAAS 153

Length = 249

>gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 257 QGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLS 305
           +GA TSIY A + +L   VSG YF++C    P+  A DE  A +LW++S
Sbjct: 227 EGAQTSIYLALAEELE-GVSGKYFSDCKLKEPAPEAMDEETARRLWEIS 274

Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274

>gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 21/173 (12%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAM 179
           + +   +VTGAN GIG     SL  HG  +V  A R    A       L  K   + + +
Sbjct: 1   IKDKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAH-----LVAKYGDKVVPL 55

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
            L++   +S+K  A     + + +++++ NAGV     +  E+G     +     + +  
Sbjct: 56  RLDVTDPESIKAAAA----QAKDVDVVINNAGVLKPA-TLLEEGALEALKQEMDVNVFGL 110

Query: 240 LQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAA 292
           L+L  A     K  A   GA  ++    SL  + P  G+Y         SK+A
Sbjct: 111 LRLAQAFAPVLK--ANGGGAIVNLNSVASL-KNFPAMGTY-------SASKSA 153

These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235

>gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA++GIG  TAR+LA  G  V +A R +D+      ++  E    + + +EL++  
Sbjct: 6   ALVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADEL--EAEGGKALVLELDVTD 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETT--FQVNHLAHFYLT 239
            + V    E   +    L+ILV NAG+  LG     D  + T     N L   Y T
Sbjct: 64  EQQVDAAVERTVEALGRLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYTT 119

CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
                A+VTGA+ GIG   AR+L  HG +V+   R +DK  +A++              +
Sbjct: 4   WRGRVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKI-EALAAECQSAGYPTLFPYQ 62

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLA 234
            +L   + +       + + + +++ + NAG+       S   +G++  F VN LA
Sbjct: 63  CDLSNEEQILSMFSAIRTQHQGVDVCINNAGLARPEPLLSGKTEGWKEMFDVNVLA 118

Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+V G    +G      LA  G RV +A  + +KA +   +I  E           +   
Sbjct: 5   AVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV--------FGLGFSHTEDGFETTFQVNHLAHFY 237
            +SV   +    + F  +++LV NAG+        F LG       F+ + QVN + +F 
Sbjct: 65  EQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLG------DFDRSLQVNLVGYFL 118

Length = 259

>gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            I+TGA+ GIG   A  LA  G +++LA R+  +   ++++ L +    + + +  ++  
Sbjct: 4   VIITGASEGIGRALAVRLARAGAQLVLAARNETRL-ASLAQELADHGG-EALVVPTDVSD 61

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTED--GFETTFQVNHLAHFYLT 239
            ++ ++  E    +F  ++ILV NAG+     F    D   FE   +VN+L   Y T
Sbjct: 62  AEACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCT 118

Length = 263

>gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 30/166 (18%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL +   ++TGA+ GIG   A +LA  G R++L  R+ +K  +A++  L      + +  
Sbjct: 2   DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKL-EALAARLPYPGRHRWVVA 60

Query: 180 EL-NLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
           +L +    ++V   A E       +N+L+ NAGV  F L      +  E    +N  A  
Sbjct: 61  DLTSEAGREAVLARAREMGG----INVLINNAGVNHFALLEDQDPEAIERLLALNLTA-- 114

Query: 237 YLTLQLENALIKGAKLFARQQGAAT---------------SIYCAT 267
              +QL  AL+    L   Q  A                 + YCA+
Sbjct: 115 --PMQLTRALL---PLLRAQPSAMVVNVGSTFGSIGYPGYASYCAS 155

Length = 263

>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 45/178 (25%), Positives = 67/178 (37%), Gaps = 33/178 (18%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLDKANDAISKILTEKPSAQCIA 178
           D+     +VTGAN GIG      L   G   V  A R  +   D   ++         + 
Sbjct: 3   DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRV---------VP 53

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAH 235
           ++L++    SV   AE        + ILV NAG+F    L     ED      + N    
Sbjct: 54  LQLDVTDPASVAAAAE----AASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETN---- 105

Query: 236 FYLTLQLENALIKGAKLFARQQGAA-TSIYCATSLDLSLPVSGSYFNNCCRCPPSKAA 292
           ++  L +  A    A + A   G A  ++    S  ++ P  G+Y         SKAA
Sbjct: 106 YFGPLAMARAF---APVLAANGGGAIVNVLSVLSW-VNFPNLGTY-------SASKAA 152

Length = 238

>gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 18/125 (14%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVTGA +G G   AR  A  G RV++A  + D A    + I         IA++ ++ +
Sbjct: 8   AIVTGAGSGFGEGIARRFAQEGARVVIADINADGAERVAADI-----GEAAIAIQADVTK 62

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--------TEDGFETTFQVNHLAHFY 237
              V+   E    KF  L+ILV NA     G +H         E+ F+  F VN  + + 
Sbjct: 63  RADVEAMVEAALSKFGRLDILVNNA-----GITHRNKPMLEVDEEEFDRVFAVNVKSIYL 117

Query: 238 LTLQL 242
               L
Sbjct: 118 SAQAL 122

This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248

>gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           +L    A+VTGA++G+G   A+ LA  G +V+LA R +++  +  ++I  E  +A  +  
Sbjct: 6   NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVV-- 63

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
            L++   +S+K      + +  +++ILV N+GV         T   F+  F  N    F+
Sbjct: 64  SLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFF 123

Query: 238 LTLQLENALIKGAKLFARQQGA 259
           +  ++        ++ AR +GA
Sbjct: 124 VAQEV------AKRMIARAKGA 139

Length = 258

>gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 13/126 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            ++TGA++GIG   AR  A  G  V LA R  D+ ++  +++L   PS +     L++  
Sbjct: 1   VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAELLNPNPSVE--VEILDVTD 58

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT-EDG----FETTFQVNHLAHFYLTL 240
            +  +    E + +   L+++++NAGV   G   +  D     F  T   N L       
Sbjct: 59  EERNQLVIAELEAELGGLDLVIINAGV---GKGTSLGDLSFKAFRETIDTNLLGAAA--- 112

Query: 241 QLENAL 246
            LE AL
Sbjct: 113 ILEAAL 118

These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 20/143 (13%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           D S     VTGA  GIG+  A +    G +VI   ++     D                 
Sbjct: 5   DFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFATFV---------- 54

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFY 237
            L++    +V +  +    +   L++LV  AG+  +G + +  ++ ++ TF VN    F 
Sbjct: 55  -LDVSDAAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFN 113

Query: 238 LTLQLENALIKGAKLFARQQGAA 260
           L   +          F RQ+  A
Sbjct: 114 LFRAV-------MPQFRRQRSGA 129

Length = 252

>gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 20/175 (11%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTG++ GIG   A  LA  G  + +   RS   A +   +I  E    + +A++ N+ 
Sbjct: 7   ALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEI--EALGRKALAVKANVG 64

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNA--GVFGLGFSHTEDGFETTFQVNHLAHFYLTLQL 242
            ++ +K+   +  ++F  L++ V NA  GV        E  ++ T  +N  A  +   + 
Sbjct: 65  DVEKIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQE- 123

Query: 243 ENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEAL 297
                  AKL  +  G    I   +SL      S  Y  N      SKAA  EAL
Sbjct: 124 ------AAKLMEKVGGGK--IISLSSLG-----SIRYLENYTTVGVSKAAL-EAL 164

Length = 250

>gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 21/193 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVTGA+ GIG   A  LA  G   I      D                + I  + ++  
Sbjct: 4   AIVTGASRGIGRAIATELAARG-FDIAINDLPDDDQATEVVAEVLAAGRRAIYFQADIGE 62

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG----FSHTEDGFETTFQVNHLAHFYLTLQ 241
           L   +   ++  + F  L+ LV NAG+           TED F+    +N    F+LT  
Sbjct: 63  LSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGPFFLTQA 122

Query: 242 LENALIKGAKLFARQQGAATSIYCATSLD--LSLPVSGSYFNNCCRCPPSKAAQDEALAT 299
           +   +++    F        SI   TS++  L  P  G Y   C     SKA    ++AT
Sbjct: 123 VARRMVEQPDRFDGPHR---SIIFVTSINAYLVSPNRGEY---CI----SKAGL--SMAT 170

Query: 300 KLW--KLSEEMIQ 310
           +L   +L++E I 
Sbjct: 171 RLLAYRLADEGIA 183

This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255

>gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           ++TGA++GIG  TA + A  G +V+LA RS  +A   +++ + E    + IA+  ++   
Sbjct: 4   VITGASSGIGRATALAFAERGAKVVLAARS-AEALHELAREVREL-GGEAIAVVADVADA 61

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY------- 237
             V++ A+   ++F  ++  V NAGV  FG     T + F   F VN+L H Y       
Sbjct: 62  AQVERAADTAVERFGRIDTWVNNAGVAVFGRFEDVTPEEFRRVFDVNYLGHVYGTLAALP 121

Query: 238 -LTLQLENALIKGAKLFARQQGAATSIYCA 266
            L  +   ALI    L   +     + Y A
Sbjct: 122 HLRRRGGGALINVGSLLGYRSAPLQAAYSA 151

These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233

>gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 14/152 (9%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L     ++TGA   IG    +++   G  VI A    +  N+ +  +  E  S +   +E
Sbjct: 2   LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVE 61

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF-SHTEDGFETTFQVN---HLAHF 236
           L++   +S+++F  +  +K+  ++  V  A      +     D     F  N   HL   
Sbjct: 62  LDITDQESLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSS 121

Query: 237 YLTLQLENALIKGAKLFARQQGAA----TSIY 264
           +L  Q      + AK F +Q G      +SIY
Sbjct: 122 FLFSQ------QFAKYFKKQGGGNLVNISSIY 147

Length = 256

>gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 16/158 (10%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A++TG+  GIG   A++    G RV +A  +L+ A    ++I    P+A  I+++
Sbjct: 1   LDGKTALITGSARGIGRAFAQAYVREGARVAIADINLEAARATAAEI---GPAACAISLD 57

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
           +      S+ +       ++ S++ILV NA +F L      T + ++  F +N     ++
Sbjct: 58  VT--DQASIDRCVAALVDRWGSIDILVNNAALFDLAPIVDITRESYDRLFAINVSGTLFM 115

Query: 239 TLQLENALI---KGAKL--FARQQG----AATSIYCAT 267
              +  A+I   +G K+   A Q G    A   +YCAT
Sbjct: 116 MQAVARAMIAQGRGGKIINMASQAGRRGEALVGVYCAT 153

This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254

>gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
            + L   NA++TGA  GIG   A +LA  G  V L  R+ +       ++          
Sbjct: 2   AQSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIA 61

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAH 235
             +++    + V    E+ + +  S++IL+ NAG+  FG         +E   QVN +  
Sbjct: 62  TADVS--DYEEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGV 119

Query: 236 FYLT 239
           +Y T
Sbjct: 120 YYAT 123

Length = 239

>gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AI+TGA  GIG   A  LA  G  ++LA  +L++A  +  + ++E      +A+  ++  
Sbjct: 5   AIITGAAQGIGRAIAERLAADGFNIVLADLNLEEAAKSTIQEISEA-GYNAVAVGADVTD 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 231
              V+   ++  +KF S +++V NAG+  +    + TE+  +  + VN
Sbjct: 64  KDDVEALIDQAVEKFGSFDVMVNNAGIAPITPLLTITEEDLKKVYAVN 111

2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 16/128 (12%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA-ISKILTEKPSAQCIAM 179
           L    A++TG ++GIG   A   A  G  + +    LD+  DA  +K   EK   +C+ +
Sbjct: 44  LKGKVALITGGDSGIGRAVAVLFAKEGADIAIV--YLDEHEDANETKQRVEKEGVKCLLI 101

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--------TEDGFETTFQVN 231
             ++      K   EE  ++   L+ILV NA      F +        T +  + TF+ N
Sbjct: 102 PGDVSDEAFCKDAVEETVRELGRLDILVNNA-----AFQYPQQSLEDITAEQLDKTFKTN 156

Query: 232 HLAHFYLT 239
             ++F++T
Sbjct: 157 IYSYFHMT 164

Length = 290

>gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 12/139 (8%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    AIVTG NTG+G   A +LA  G  +I+        N   ++ L EK   +   +
Sbjct: 12  SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTH---GTNWDETRRLIEKEGRKVTFV 68

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
           +++L + +S +K  +E  ++F  ++ILV NAG         + ++ +     +N  + ++
Sbjct: 69  QVDLTKPESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYH 128

Query: 238 LTLQLENALIKGAKLFARQ 256
           L+  +       AK+ A+Q
Sbjct: 129 LSQAV-------AKVMAKQ 140

Length = 258

>gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 21/128 (16%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L+   AI+TGA++GIG   A+  A  G +V++  R   + +  +++I  E   A  +A +
Sbjct: 4   LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGD 63

Query: 181 LNLCRLKSVKKFAEEYQK--------KFRSLNILVLNAGVFG-LGFSH--TEDGFETTFQ 229
           +            E Y K        +F  L+I   NAG  G +G     + +G+  T  
Sbjct: 64  VR----------DEAYAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLA 113

Query: 230 VNHLAHFY 237
            N  + F 
Sbjct: 114 TNLTSAFL 121

Length = 254

>gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS   A+VTGA+ GIG E AR L   G  V L    ++K  +A++  L E+        
Sbjct: 3   DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKL-EALAAELGERVK----IF 57

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
             NL     VK   ++ +     ++ILV NAG+   GL    +++ +++  +VN  A F 
Sbjct: 58  PANLSDRDEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFR 117

Query: 238 LTLQLENALIK 248
           LT +L + +++
Sbjct: 118 LTRELTHPMMR 128

Length = 245

>gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 24/156 (15%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRS---LDKANDAISKILTEKPSAQCIAMELNL 183
           ++TG  +GIG   A+     G  VI+  R+   L +A     +I TE     C   + + 
Sbjct: 9   LITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTE----VCDVADRD- 63

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGV-FGLGFSHTEDGFET---TFQVNHLAHFYLT 239
               S ++  E  +K++ +LN+L+ NAG+      +  ED  +        N LA   LT
Sbjct: 64  ----SRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLT 119

Query: 240 L--------QLENALIKGAKLFARQQGAATSIYCAT 267
                    Q E  +I  +   A    A+T +YCAT
Sbjct: 120 ALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCAT 155

Length = 245

>gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL+   A+VTG++ GIG+  A  LA  G  VIL  R   K   A   +  +  SA  +A 
Sbjct: 7   DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAF 66

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG 211
           ++      +V+   + ++ +   ++ILV NAG
Sbjct: 67  DVT--DHDAVRAAIDAFEAEIGPIDILVNNAG 96

Length = 255

>gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L+  N ++TG+  GIGF  A  LA +G  +I+   + ++A  A++K+  E   A   A  
Sbjct: 7   LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKA--HAAP 64

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            N+   + V+   E  +K    +++L+ NAG+
Sbjct: 65  FNVTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96

Length = 254

>gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS   A+VTG + G+G + A +L   G RV+L+ R  ++  +A + +  E      + +
Sbjct: 9   DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL--EALGIDALWI 66

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
             ++     +++ AEE  ++F  ++ILV NAG 
Sbjct: 67  AADVADEADIERLAEETLERFGHVDILVNNAGA 99

Length = 259

>gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 113 LQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP 172
           + IL    L+   A+VTG+  G+GFE AR+LA  G  V++  R+      A++ +     
Sbjct: 1   MSILQRFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG 60

Query: 173 SAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG 211
           +A+  A+  ++   ++V         +   L+ILV N G
Sbjct: 61  AAE--ALAFDIADEEAVAAAFARIDAEHGRLDILVNNVG 97

Length = 256

>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 8/116 (6%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPS--AQCI 177
           D +   A++TGA +G G   AR  A  G +++LA    D   DA+ + + E  +  A+ +
Sbjct: 3   DFAGKVAVITGAASGFGLAFARIGAALGMKLVLA----DVQQDALDRAVAELRAQGAEVL 58

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVN 231
            +  ++     V+  A+   ++F ++++L  NAGV   G    ++   +E    VN
Sbjct: 59  GVRTDVSDAAQVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVN 114

Length = 287

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 116 LHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQ 175
           L G+       ++TGA++GIG  TA  +A  G  V L  R+ +  ++ +++I        
Sbjct: 369 LVGK-----VVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEI--RAKGGT 421

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG-------VFGLGFSHTEDGFETTF 228
             A   +L    +V    ++   +   ++ LV NAG              H  D +E T 
Sbjct: 422 AHAYTCDLTDSAAVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFH--D-YERTM 478

Query: 229 QVNHLAHFYLTLQL 242
            VN+     L L L
Sbjct: 479 AVNYFGAVRLILGL 492

Length = 657

>gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           LSN  AIVTGA+ GIG   AR LA  G  V +       A D +   + E    + IA++
Sbjct: 3   LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEI-EAAGGRAIAVQ 61

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 231
            ++    +V +  +  +  F  +++LV NAGV  LG       + F+ T   N
Sbjct: 62  ADVADAAAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATN 114

Length = 245

>gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
              +  AIVTGA  GIG   A +LA  G  V++A  + + A     +I+ +  +A  IA+
Sbjct: 3   RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTA--IAV 60

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG 214
           ++++    S K  A+     F  ++ LV NA ++G
Sbjct: 61  QVDVSDPDSAKAMADATVSAFGGIDYLVNNAAIYG 95

Length = 250

>gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           +L+   A+VTGA +GIG E A  LA  G  V +A  + D AN    +I   K   + I +
Sbjct: 4   NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEI--NKAGGKAIGV 61

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            +++    +V    ++  ++F S++ILV NAG+
Sbjct: 62  AMDVTNEDAVNAGIDKVAERFGSVDILVSNAGI 94

Length = 262

>gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL    A+VTG++ GIG +TA+ LA  G  V++  R      + +   +      +  A+
Sbjct: 3   DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA-GGRASAV 61

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNA 210
             +L   +SV    +  +++F  L+ LVLNA
Sbjct: 62  GADLTDEESVAALMDTAREEFGGLDALVLNA 92

Length = 248

>gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A++TGA+ GIG   AR     G  V++  R  D    A  ++  E P  +   + 
Sbjct: 7   LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLA 66

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAG--VFGLGFSHTEDGFETTFQVNHLAHFYL 238
            ++   +  +   +  +  +  L+ILV NAG  +      +TED +   F+ N  + F L
Sbjct: 67  ADVSDDEDRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFEL 126

Query: 239 TLQL 242
           +   
Sbjct: 127 SRYA 130

Length = 257

>gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 12/136 (8%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTG + GIG   A  LA  G  V++  R S D A +  ++I  E+   + + +  ++ 
Sbjct: 1   ALVTGGSRGIGKAIALRLAERGADVVINYRKSKDAAAEVAAEI--EELGGKAVVVRADVS 58

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNA--GVFGLGFSHTEDGFETTFQVNHLAHFYLTLQL 242
           + + V++     +++F  L++LV NA  G F      T   ++     N  A  +   Q 
Sbjct: 59  QPQDVEEMFAAVKERFGRLDVLVSNAAAGAFRPLSELTPAHWDAKMNTNLKALVHCAQQ- 117

Query: 243 ENALIKGAKLFARQQG 258
                  AKL   + G
Sbjct: 118 ------AAKLMRERGG 127

This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 17/134 (12%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +VTGA +GIG ETA + A  G  V+ +      A      I      A   A  +++  
Sbjct: 318 VVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELI--RAAGAVAHAYRVDVSD 375

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG---FSHTEDGFETTFQVNHLAHFYLTLQL 242
             +++ FAE  + +    +I+V NAG+ G+       + + ++    VN     +     
Sbjct: 376 ADAMEAFAEWVRAEHGVPDIVVNNAGI-GMAGGFLDTSAEDWDRVLDVN----LW----- 425

Query: 243 ENALIKGAKLFARQ 256
              +I G +LF RQ
Sbjct: 426 --GVIHGCRLFGRQ 437

Length = 582

>gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AI+TG  +GIG  TAR  A HG RV++A    D  +DA   +  E        +  ++  
Sbjct: 7   AIITGGASGIGEATARLFAKHGARVVIA----DIDDDAGQAVAAELGDPDISFVHCDVTV 62

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLT 239
              V+   +    +F  L+I+  NAGV G      L  S  E  FE    VN    F  T
Sbjct: 63  EADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILETSLEE--FERVLDVNVYGAFLGT 120

Query: 240 LQLENALIKGAK 251
                 +I   K
Sbjct: 121 KHAARVMIPAKK 132

Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AI+TGA  GIG E A + A  G  V+++  + D AN  + +I       Q  A   ++  
Sbjct: 14  AIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITS 71

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG---FSHTEDGFETTFQVNHLAHFYLT 239
            + +   A+    K   ++ILV NAG  G G   F      F   +++N  + F+L+
Sbjct: 72  EQELSALADFALSKLGKVDILVNNAG--GGGPKPFDMPMADFRRAYELNVFSFFHLS 126

Length = 255

>gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA  GIGF  A+ L   G +V +   + + A  A  K+   K   + IA++ ++  
Sbjct: 5   ALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKL--SKDGGKAIAVKADVSD 62

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 231
              V     +    F  LN++V NAGV       + TE+ F+  + +N
Sbjct: 63  RDQVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNIN 110

Length = 256

>gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 11/132 (8%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRV-ILACRSLDKANDAISKILTEKPSAQCI 177
           ++L    A+VTGA+ GIG   A  LA  G  V I   R+   A++ I +I +    A  I
Sbjct: 2   KNLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLI 61

Query: 178 AMELNLCRLKSVKKFAEEYQKKFR------SLNILVLNAGVFGLGF--SHTEDGFETTFQ 229
             +LN   +  VKK  E+ + + +       ++ILV NAG+   G   + TE+ F+    
Sbjct: 62  EADLN--SIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMA 119

Query: 230 VNHLAHFYLTLQ 241
           VN  A F+L  Q
Sbjct: 120 VNIKAPFFLIQQ 131

Length = 254

>gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 23/165 (13%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           D +   A+VTGA  GIG  T ++LA  G RV+   R+       +  ++ E P  + + +
Sbjct: 4   DFAGKRALVTGAGKGIGRATVKALAKAGARVVAVSRT----QADLDSLVRECPGIEPVCV 59

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
           +L      S     EE       +++LV NA V  L      T++ F+ +F VN  A  +
Sbjct: 60  DL------SDWDATEEALGSVGPVDLLVNNAAVAILQPFLEVTKEAFDRSFDVNVRAVIH 113

Query: 238 LTL----QLENALIKGAKLFARQQGAAT-----SIYCAT--SLDL 271
           ++      +    + G+ +    Q +       ++YC+T  +LD+
Sbjct: 114 VSQIVARGMIARGVPGSIVNVSSQASQRALTNHTVYCSTKAALDM 158

Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244

>gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 19/143 (13%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRS---LDKANDAISKILTEKPSAQCIAMELN 182
           A+VTGA+ GIG  TAR L   G RV +  R    L  A         E      +A ++ 
Sbjct: 3   ALVTGASRGIGEATARLLHAEGYRVGICARDEARLAAAAAQ------ELEGVLGLAGDVR 56

Query: 183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQV--NHLAHFYLTL 240
                 V++  +  ++ F  L+ LV NAGV  +         E    +  N    FY   
Sbjct: 57  --DEADVRRAVDAMEEAFGGLDALVNNAGVGVMKPVEELTPEEWRLVLDTNLTGAFYCIH 114

Query: 241 QLENALIKGAKLFARQQGAATSI 263
           +   A      L  R  G   ++
Sbjct: 115 K---AAP---ALLRRGGGTIVNV 131

This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226

>gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVIL-ACRSLDKANDAISKILTEKPSAQCIA 178
            L +   +VTG+  GIG   A  LA  G  V++ A +  ++ N+ +  +  ++   + I 
Sbjct: 3   SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMV--KENGGEGIG 60

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGF-ETTFQVNHLAH 235
           +  ++   +  +  A+    ++   +ILV NAG+ GL   F + +D   +     +  + 
Sbjct: 61  VLADVSTREGCETLAKATIDRYGVADILVNNAGL-GLFSPFLNVDDKLIDKHISTDFKSV 119

Query: 236 FYLT 239
            Y +
Sbjct: 120 IYCS 123

Length = 252

>gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTG  +GIG   A+ LA  G  V++A   +D           +    + + ++ ++  
Sbjct: 4   ALVTGGASGIGLAIAKRLAAEGAAVVVA--DIDPEIAEKVAEAAQGGP-RALGVQCDVTS 60

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVF 213
              V+   E+   +F  L+I+V NAG+ 
Sbjct: 61  EAQVQSAFEQAVLEFGGLDIVVSNAGIA 88

This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVTG   GIG     +LA  G +V++   S  +A + +   L  K      A++ ++ +
Sbjct: 9   AIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNEL-GKEGHDVYAVQADVSK 67

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
           ++   +  EE    F  ++ILV NAG+
Sbjct: 68  VEDANRLVEEAVNHFGKVDILVNNAGI 94

Length = 247

>gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 16/95 (16%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQ--CIAMELNL 183
           A+VTGA  GIG   A  LA  G  VIL  R+ +K +    +I  EK   +   IA + + 
Sbjct: 4   AVVTGATDGIGKAYAEELAKRGFNVILISRTQEKLDAVAKEIE-EKYGVETKTIAADFS- 61

Query: 184 CRLKSVKKFAEEYQKKFRSLN-----ILVLNAGVF 213
                     + Y++  + L      ILV N G+ 
Sbjct: 62  -------AGDDIYERIEKELEGLDIGILVNNVGIS 89

This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A++TGA++GIG  TA + A  G  + L  RS D      +++ +    A   ++  +L  
Sbjct: 9   ALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSI--DLSN 66

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
            +++     E  ++F   ++L+ NAG+
Sbjct: 67  PEAIAPGIAELLEQFGCPDVLINNAGM 93

Length = 241

>gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTG  +G+G  T   L   G +V++                  K    C  + +++  
Sbjct: 5   AVVTGGASGLGLATVERLLAQGAKVVILDLPNSPGETV------AKLGDNCRFVPVDVTS 58

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
            K VK      + KF  L+I+V  AG+
Sbjct: 59  EKDVKAALALAKAKFGRLDIVVNCAGI 85

HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252

>gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 19/137 (13%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            IVTGA  GIG   AR L   G  VI                L   P        L++  
Sbjct: 1   VIVTGAAQGIGRAVARHLLQAGATVIALDLPFVLL-LEYGDPLRLTP--------LDVAD 51

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH---TEDGFETTFQVNHLAHFYLTLQL 242
             +V++       +   ++ LV  AGV   G +    TED +E TF VN    F L   +
Sbjct: 52  AAAVREVCSRLLAEHGPIDALVNCAGVLRPGATDPLSTED-WEQTFAVNVTGVFNLLQAV 110

Query: 243 ENALIKGAKLFARQQGA 259
              +        R+ GA
Sbjct: 111 APHMK------DRRTGA 121

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA++GIG  TAR LA  G  V  A R +DK        + +  S     + L++  
Sbjct: 6   ALVTGASSGIGKATARRLAAQGYTVYGAARRVDK--------MEDLASLGVHPLSLDVTD 57

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGL 215
             S+K   +    +   +++LV NAG +G 
Sbjct: 58  EASIKAAVDTIIAEEGRIDVLVNNAG-YGS 86

Length = 273

>gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L+    ++TGA+ GIG   A + A  GC + L  R  D   +A++  L           
Sbjct: 4   HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADAL-EALAADLRAAHGVDVAVH 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG 211
            L+L   ++ ++ A E       ++ILV NAG
Sbjct: 63  ALDLSSPEAREQLAAEAG----DIDILVNNAG 90

Length = 259

>gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 127 IVTGANTGIGFETARSLA--LHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           I+TGA+ GIG   A  L        V+L  RS +     + + L        +    +L 
Sbjct: 3   ILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPLQ-ELKEELRPGLRVTTVK--ADLS 59

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAHFYLTLQ 241
               V++  E  +K     ++L+ NAG             D  +  F +N        + 
Sbjct: 60  DAAGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEFIDLDELQKYFDLN----LTSPVC 115

Query: 242 LENALIK 248
           L + L++
Sbjct: 116 LTSTLLR 122

Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241

>gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 12/131 (9%)

Query: 116 LHGRD-LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA 174
           +  RD L+N  A+VT +  GIG   AR LA  G  V+++ R     + A++ +  E    
Sbjct: 2   VTRRDPLANKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQQNVDRAVATLQGEG--- 58

Query: 175 QCIAMELNLC---RLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTF 228
             +++   +C   + +  ++           ++ILV NA V   FG     TE+ ++   
Sbjct: 59  --LSVTGTVCHVGKAEDRERLVATAVNLHGGVDILVSNAAVNPFFGNILDSTEEVWDKIL 116

Query: 229 QVNHLAHFYLT 239
            VN  A   +T
Sbjct: 117 DVNVKATALMT 127

This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 12/121 (9%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTG+ +GIG   AR+LA  G  ++L         +A+   L  K   + +    +L +
Sbjct: 5   ALVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGLAAKHGVKVLYHGADLSK 64

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTE-------DGFETTFQVNHLAHFYL 238
             +++      Q++F  ++ILV NAG+      H         + ++    +N  A F+ 
Sbjct: 65  PAAIEDMVAYAQRQFGGVDILVNNAGI-----QHVAPIEDFPTEKWDAIIALNLSAVFHT 119

Query: 239 T 239
           T
Sbjct: 120 T 120

DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIA 178
            L+   AIVTGA +GIG  TA+  A  G RV++A    D+  +A  ++        +  A
Sbjct: 2   RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVA----DRDAEAAERVAAAIAAGGRAFA 57

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 231
            + ++   ++V+   +    ++  L++LV NAG    G   +  E  ++   +VN
Sbjct: 58  RQGDVGSAEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVN 112

Length = 252

>gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 10/133 (7%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A+VTGANTG+G   A  LA  G  ++ A RS  + ++   ++  E    + +++
Sbjct: 2   SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS--EPSETQQQV--EALGRRFLSL 57

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAH 235
             +L  ++++K   +   ++F  ++ILV NAG+        FS  E  ++    VN  + 
Sbjct: 58  TADLSDIEAIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFS--EKDWDDVMNVNLKSV 115

Query: 236 FYLTLQLENALIK 248
           F+LT       +K
Sbjct: 116 FFLTQAAAKHFLK 128

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248

>gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 10/87 (11%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA++GIG  TA  LA  G RV    R+  +A           P      +EL++  
Sbjct: 7   ALVTGASSGIGRATAEKLARAGYRVFGTSRNPARA----------APIPGVELLELDVTD 56

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
             SV+   +E   +   +++LV NAGV
Sbjct: 57  DASVQAAVDEVIARAGRIDVLVNNAGV 83

Length = 270

>gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCI 177
             L    A+VTG   G+G   AR+ A  G   ++ C R+ +K     +++  E   A+ +
Sbjct: 2   GRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAEL--EALGAKAV 59

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAH 235
            ++ +L  ++  ++      + F  L+ LV  AG+   G     + + F+  F VN  A 
Sbjct: 60  FVQADLSDVEDCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAP 119

Query: 236 FYL 238
           F+L
Sbjct: 120 FFL 122

Length = 260

>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 34/162 (20%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A++TG    +G   A+ LA  G +V +  R+ +KA   +++I  +    + +A+
Sbjct: 7   SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEI--KAAGGEALAV 64

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG---------------------VFGLGFS 218
           + ++   +S+++  ++  + F   +IL+  AG                      F L   
Sbjct: 65  KADVLDKESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDL--- 121

Query: 219 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARQQGAA 260
             E+GFE  F +N L     T          AK    ++G  
Sbjct: 122 -DEEGFEFVFDLNLLGTLLPTQVF-------AKDMVGRKGGN 155

Length = 278

>gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 16/133 (12%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL----------TE 170
           LS   A VTGA+ GIG   A  LA  G  V++A ++  + ++  +K L           E
Sbjct: 1   LSGKVAFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIE 60

Query: 171 KPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG----FET 226
               Q + + +++     V+   E    +F  L+ILV NAG   +  S  ED     F+ 
Sbjct: 61  AAGGQALPIVVDVRDEDQVRALVEATVDQFGRLDILVNNAGA--IWLSLVEDTPAKRFDL 118

Query: 227 TFQVNHLAHFYLT 239
             +VN    + L+
Sbjct: 119 MQRVNLRGTYLLS 131

This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           N +VT ++ GIGF  AR L   G RV+++ R+ +    A+ ++   K   +  A++ +L 
Sbjct: 2   NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL---KEYGEVYAVKADLS 58

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAG 211
               +K   +E  +    ++ LV NAG
Sbjct: 59  DKDDLKNLVKEAWELLGGIDALVWNAG 85

Length = 259

>gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L      +TG   G+G  TA  LA  G RV L  R     +      L   P+      
Sbjct: 4   SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT----LPGVPADALRIG 59

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 231
            ++L   ++ ++  +E  ++F  L+ LV  AG F  G       D ++  + VN
Sbjct: 60  GIDLVDPQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVN 113

Length = 239

>gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
            AI+TG  +GIG  TA+ L   G +V +     ++   A +++    P  +   ++ ++ 
Sbjct: 2   VAIITGGASGIGLATAKLLLKKGAKVAIL--DRNENPGAAAELQAINPKVKATFVQCDVT 59

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVN 231
             + +    ++  +KF  ++IL+ NAG+      L        +E T  VN
Sbjct: 60  SWEQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLPPPWEKTIDVN 110

This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification]

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 21  WEERVTADGCVYYVNHATEGTQWTHPR---TGVKKKVSGDLPLGWEKSVSEDGKITFYNK 77
           WEE    DG +YY N  T  + W  P+    G ++ +  D    W++  + DGK+ +YN 
Sbjct: 17  WEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVD---PWKECRTADGKVYYYNS 73

Query: 78  DTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKA 112
            T    +  P      E K+      QK+D  +  
Sbjct: 74  ITRESRWKIP-----PERKKVEPIAEQKHDERSMI 103

Length = 590

>gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
              L+    +VTGA  GIG E AR L   G ++ L      +     +++       + +
Sbjct: 4   MTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAEL---GGDDRVL 60

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTE-DGFETTFQVN 231
            +  ++  L +++  AEE  ++F  ++++V NAG+   G  +  + D F     VN
Sbjct: 61  TVVADVTDLAAMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVN 116

Length = 296

>gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
            DL      +TG   GIG  TAR+LA  G RV +       A +  +++         + 
Sbjct: 1   DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL------GLVVG 54

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 216
             L++    S   F +  +     +++LV NAGV  +G
Sbjct: 55  GPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVMPVG 92

Length = 273

>gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 11/121 (9%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRS---LDKANDAISKILTEKPSAQCIAMELNL 183
           +VTGA+ G+G + A++ A  G  VIL  R    L+K  DAI +    +P A  I  +L  
Sbjct: 10  LVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFA--IRFDLMS 67

Query: 184 CRLKSVKKFAEEYQKKFRS-LNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYL 238
              K  ++FA    +  +  L+ +V  AG F     L F    + +   +++N +A   L
Sbjct: 68  AEEKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAE-WVNQYRINTVAPMGL 126

Query: 239 T 239
           T
Sbjct: 127 T 127

Length = 239

>gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-ANDAISKILTEKPSAQCI 177
            DL     ++TG +TG+G   A        +V++  RS ++ AND   +I  +K   + I
Sbjct: 3   SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEI--KKAGGEAI 60

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           A++ ++     V    +   K+F +L++++ NAG+
Sbjct: 61  AVKGDVTVESDVVNLIQTAVKEFGTLDVMINNAGI 95

Length = 261

>gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL +   ++TG   G+G   A  LA  G ++ L   + +K  +A+++        +    
Sbjct: 2   DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAEC--GALGTEVRGY 59

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
             N+   + V+    +  + F  LN L+ NAG+
Sbjct: 60  AANVTDEEDVEATFAQIAEDFGQLNGLINNAGI 92

Length = 253

>gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 24/152 (15%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
            +L+   A+VTG   GIG  T   L   G RV+   RS                  + +A
Sbjct: 5   LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDLPE---------GVEFVA 55

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG---VFGLGFSH-TEDGFETTFQVNHLA 234
              +L   +     A    ++   ++ILV   G       GF+  T++ ++    +N LA
Sbjct: 56  A--DLTTAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLA 113

Query: 235 HFYLTLQLENALIKGAKLFARQQGAA---TSI 263
                ++L+ AL+ G  + AR  G     TSI
Sbjct: 114 ----AVRLDRALLPG--MIARGSGVIIHVTSI 139

Length = 260

>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 57 DLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
           LP GWE+    DG+  +YN +T    +  PR 
Sbjct: 1  PLPPGWEERKDPDGRPYYYNHETKETQWEKPRE 33

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

>gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 53/95 (55%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           + L+   A VTG   GIG ETAR LA  G  V+LA  +L+ A    ++I  +  + + +A
Sbjct: 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVA 469

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF 213
           +++++   ++VK    +    +  ++I+V NAG+ 
Sbjct: 470 LKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIA 504

Length = 676

>gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVTGA++G G  T   LA  G  VI   R+ +K  + +S+             +L++  
Sbjct: 6   AIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED----GFETTFQVN 231
             S+  F +   K+   +++LV NAG    GF   E+     +   F+ N
Sbjct: 66  QNSIHNF-QLVLKEIGRIDLLVNNAGYANGGF--VEEIPVEEYRKQFETN 112

Length = 280

>gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 12/129 (9%)

Query: 116 LHGRDLSNYNAIVTGANTGIGFETARSLALHGCRV-ILACRSLDKANDAISKILTEKPSA 174
              R      A++TG   GIG   A +    G +V +L   + ++A     K L EK   
Sbjct: 1   YSMR-FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEA-----KELREKGV- 53

Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL-GFSH-TEDGFETTFQVNH 232
               ++ ++     VKK  E  +K+F  +++LV NAG+  L  F    E+ +    ++N 
Sbjct: 54  --FTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINL 111

Query: 233 LAHFYLTLQ 241
               Y T +
Sbjct: 112 NGAIYTTYE 120

Length = 255

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +VTGA  GIG    +  A  G +V++A R++++A +    +  +       A+ +++  
Sbjct: 8   VLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDH-----HALAMDVSD 62

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED 222
              +++  E+  ++F  +++LV NAGV     + T D
Sbjct: 63  EAQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLD 99

Length = 520

>gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 15/94 (15%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI---AMELN 182
           A+VTGA  GIG   AR L   G RVI        + +  +K   E+           EL+
Sbjct: 5   ALVTGAKRGIGSAIARELLNDGYRVIAT----YFSGNDCAKDWFEEYGFTEDQVRLKELD 60

Query: 183 LC----RLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           +       +++ +  EE       ++ILV NAG+
Sbjct: 61  VTDTEECAEALAEIEEEEG----PVDILVNNAGI 90

Length = 245

>gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK 187
           +TG++ G+G   AR+L   G  V+L  RS  +A DA  K      +   I    +L  L 
Sbjct: 12  ITGSSDGLGLAAARTLLHQGHEVVLHARSQKRAADA--KAACPGAAGVLIG---DLSSLA 66

Query: 188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED-GFETTFQVNHLAHFYLT 239
             +K A++        + ++ NAG+       T D G      VN LA + LT
Sbjct: 67  ETRKLADQVN-AIGRFDAVIHNAGILSGPNRKTPDTGIPAMVAVNVLAPYVLT 118

Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260

>gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQ-CIAMELNLC 184
           A +TGA  G+G   AR +A  G +V L   +     DA +  +          A   ++ 
Sbjct: 2   AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVT 61

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 216
                +    +       L++LV NAGV   G
Sbjct: 62  DEAQWQALLAQAADAMGGLSVLVNNAGVGSFG 93

Length = 251

>gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            ++TGA+ G+G  TAR+ A  G +V+L  R  +      ++I       + +A+  ++  
Sbjct: 11  VVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEI--RAAGGEALAVVADVAD 68

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYLTL 240
            ++V+  A+  +++   ++  V NA V  FG     T + F    +V +L   + TL
Sbjct: 69  AEAVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTL 125

Length = 334

>gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTG   GIG   A  LA  G  V +A  + + A +   +I   +   + +A +L++  
Sbjct: 3   ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEI--NQAGGKAVAYKLDVSD 60

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH-----TEDGFETTFQVN 231
              V    ++  +KF   +++V NAGV            TE+  +  + VN
Sbjct: 61  KDQVFSAIDQAAEKFGGFDVMVNNAGV---APITPILEITEEELKKVYNVN 108

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254

>gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 15/143 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL--TEKPSAQCIAMELNL 183
           A++TG    IG   AR+L   G RV +         DA++  L      SA  +  +L  
Sbjct: 9   ALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLL- 67

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTL 240
               ++ +        F  L+ LV NA  F    LG S TE  ++  F  N  A F+L+ 
Sbjct: 68  -DPDALPELVAACVAAFGRLDALVNNASSFYPTPLG-SITEAQWDDLFASNLKAPFFLSQ 125

Query: 241 QLENALIKGAKLFARQQGAATSI 263
                    A    +Q+GA  +I
Sbjct: 126 AA-------APQLRKQRGAIVNI 141

Length = 249

>gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 21/153 (13%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELN---L 183
           IVTG  +GIG   +  LA  G   ++  RS    ++   ++   +P A+ + ++L     
Sbjct: 11  IVTGGASGIGAAISLRLAEEGAIPVIFGRS-APDDEFAEELRALQPRAEFVQVDLTDDAQ 69

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGVF-GLGFSHTEDGFETTFQVNHLAHFYLTLQL 242
           CR  +V++   ++ +    ++ LV NAGV  G+G     + F  + + N L H+Y+    
Sbjct: 70  CR-DAVEQTVAKFGR----IDGLVNNAGVNDGVGLEAGREAFVASLERN-LIHYYVMAHY 123

Query: 243 ENALIK---------GAKLFARQQGAATSIYCA 266
               +K          +K     QG  TS Y A
Sbjct: 124 CLPHLKASRGAIVNISSKTALTGQG-GTSGYAA 155

Length = 258

>gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           ++TG  +G+G  TA  LA  G ++ L   + +    A + +L   P A+ + ++ ++   
Sbjct: 7   LITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVLLIKADVSDE 66

Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFY 237
             V+ + +   ++F  ++    NAG+ G   L      D F+    +N    FY
Sbjct: 67  AQVEAYVDATVEQFGRIDGFFNNAGIEGKQNLTEDFGADEFDKVVSINLRGVFY 120

Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLD--KANDAISKILTEKPSAQCI---AME 180
           A+VTGA  GIG   A  LA  G  V+     LD   A +A++ +      A  +   A+ 
Sbjct: 213 ALVTGAARGIGAAIAEVLARDGAHVVC----LDVPAAGEALAAV------ANRVGGTALA 262

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           L++    +  + AE   ++   L+I+V NAG+
Sbjct: 263 LDITAPDAPARIAEHLAERHGGLDIVVHNAGI 294

Length = 450

>gnl|CDD|236110 PRK07831, PRK07831, short chain dehydrogenase; Provisional

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 114 QILHGRDLSNYNAIVTGA-NTGIGFETARSLALHGCRVILA---CRSLDKANDAISKILT 169
            +L G+       +VT A  TGIG  TAR     G RV+++    R L +  D ++    
Sbjct: 13  GLLAGK-----VVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAA--- 64

Query: 170 EKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG 214
           E    +  A+  ++     V    +   ++   L++LV NAG+ G
Sbjct: 65  ELGLGRVEAVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAGLGG 109

Length = 262

>gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A++TGA+ GIG   AR LA     ++L  R  ++ +    ++  E P A      ++L  
Sbjct: 6   ALITGASRGIGAAIARELAPTH-TLLLGGRPAERLD----ELAAELPGAT--PFPVDLTD 58

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYLTLQLE 243
            +++    E+       L++LV NAGV  LG     T D +  T +VN +A   LT  L 
Sbjct: 59  PEAIAAAVEQ----LGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLL 114

Query: 244 NAL 246
            AL
Sbjct: 115 PAL 117

Length = 227

>gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 14/127 (11%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRS---LDKANDAISKILTEKPSAQCIAMELN 182
           A+VTGA+ GIG E AR+LA  G RV L  R+   L   + +   +          A+  +
Sbjct: 3   ALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLAALSASGGDVE---------AVPYD 53

Query: 183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYLTL 240
               +  +   +  + +F  +++LV NAG+         ++   E  F +N +A   LT 
Sbjct: 54  ARDPEDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAELEAHFSINVIAPAELTR 113

Query: 241 QLENALI 247
            L  AL 
Sbjct: 114 ALLPALR 120

This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223

>gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 31/177 (17%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           ++TG ++G G   A+ L   G  V+  C  L K     +K L    S +   ++L++ + 
Sbjct: 4   LITGCDSGFGNLLAKKLDSLGFTVLAGC--LTKNGPG-AKELRRVCSDRLRTLQLDVTKP 60

Query: 187 KSVKKFAEEYQKKF--RSLNILVLNAGVFGLGFSHTEDGFETTF-------QVNHLAHFY 237
           + +K+ A+  ++    + L  LV NAG+ G G     D             +VN      
Sbjct: 61  EQIKRAAQWVKEHVGEKGLWGLVNNAGILGFG----GDEELLPMDDYRKCMEVNLFGTVE 116

Query: 238 LTLQLENALIKGAK--------LFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRC 286
           +T      L++ AK        +  R    A   YCA+   +        F++  R 
Sbjct: 117 VTKAFL-PLLRRAKGRVVNVSSMGGRVPFPAGGAYCASKAAVEA------FSDSLRR 166

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281

>gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTG   GIG+     LA  G  V    R+  K  D       EK   +      ++  
Sbjct: 9   ALVTGGTKGIGYAIVEELAGLGAEVYTCARN-QKELDECLTEWREK-GFKVEGSVCDVSS 66

Query: 186 LKSVKKFAEEYQKKFRS-LNILVLNAG--VFGLGFSHTEDGFETTFQVNHLAHFYLTLQL 242
               ++  +     F   LNILV NAG  +      +TE+ +      N  A ++L+ +L
Sbjct: 67  RSERQELMDTVASHFGGKLNILVNNAGTNIRKEAKDYTEEDYSLIMSTNFEAAYHLS-RL 125

Query: 243 ENALIK 248
            + L+K
Sbjct: 126 AHPLLK 131

This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251

>gnl|CDD|169389 PRK08339, PRK08339, short chain dehydrogenase; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 22/53 (41%), Positives = 27/53 (50%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP 172
           DLS   A  T ++ GIGF  AR LA  G  VIL  R+ +    A  KI +E  
Sbjct: 5   DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESN 57

Length = 263

>gnl|CDD|181188 PRK07985, PRK07985, oxidoreductase; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 12/142 (8%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           GR L +  A+VTG ++GIG   A + A  G  V ++   +++ +    K + E+   + +
Sbjct: 45  GR-LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAV 103

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG-------VFGLGFSHTEDGFETTFQV 230
            +  +L   K  +    E  K    L+I+ L AG       +  L    T + F+ TF +
Sbjct: 104 LLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADL----TSEQFQKTFAI 159

Query: 231 NHLAHFYLTLQLENALIKGAKL 252
           N  A F+LT +    L KGA +
Sbjct: 160 NVFALFWLTQEAIPLLPKGASI 181

Length = 294

>gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 10/159 (6%)

Query: 87  PRIVFAKEEKENP---LDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSL 143
           P+  F ++ +E P    +++ K DH  ++ +   GR L    A++TGA++GIG  TA + 
Sbjct: 18  PQPPFPEQTQEAPGTIHEMQPKPDHGEQSYKGF-GR-LQGRKALITGADSGIGRATAIAF 75

Query: 144 ALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL 203
           A  G  + L     ++ + A    L +    + +A+  +L      ++  E   K+   L
Sbjct: 76  AREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELGGL 135

Query: 204 NILVLNAG----VFGLGFSHTEDGFETTFQVNHLAHFYL 238
           +ILV  AG    V  +    TE  F+ TF+ N  A F+L
Sbjct: 136 DILVNIAGKQTAVKDIADITTEQ-FDATFKTNVYAMFWL 173

Length = 300

>gnl|CDD|183797 PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 20/151 (13%)

Query: 121 LSNYNAIVTGAN--TGIGFETARSLALHGCRVILAC-----RSLDKANDAISKIL----T 169
           L N  A+VTG +   GIG    + LA  G  +         + +    D   +I      
Sbjct: 4   LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEEL 63

Query: 170 EKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV-FGLGFSH-TEDGFETT 227
            K   +  +MEL+L +  + K+   +  ++    +ILV NA       FS+ T +  +  
Sbjct: 64  LKNGVKVSSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKH 123

Query: 228 FQVNHLAHFYLTLQLENALIKGAKLFARQQG 258
           + VN  A   L+ Q        A+ F ++ G
Sbjct: 124 YMVNVRATTLLSSQF-------ARGFDKKSG 147

Length = 256

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 17/157 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
             +TG   GIG   A   A  G R+++  R  + A     K L E    + ++++ ++  
Sbjct: 272 VAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGA-----KKLAEALGDEHLSVQADITD 326

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAG---VFGLGFSHTEDGFETTFQVNHLAHFYLTLQL 242
             +V+    + Q ++  L++LV NAG   VF      + + F   + VN    F      
Sbjct: 327 EAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAF------ 380

Query: 243 ENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSY 279
             A  + A     Q G   ++    SL L+LP   +Y
Sbjct: 381 --ACARAAARLMSQGGVIVNLGSIASL-LALPPRNAY 414

Length = 520

>gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A++TGA+ GIGF  A++ A  G  ++    + +  +  ++        A     
Sbjct: 7   SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAH--GY 64

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
             ++     V+    + +K+   ++ILV NAG+
Sbjct: 65  VCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGI 97

Length = 265

>gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACR---SLDKANDAISKILTEKPSAQC 176
           DL    A++TGA+TGIG   A +    G +V +A R   +L+K  D I          + 
Sbjct: 6   DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS-----GGKV 60

Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           + +  ++ + + V    ++   +   ++I V NAG+
Sbjct: 61  VPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGI 96

Length = 253

>gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 27/154 (17%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           D S  + +VTGA++GIG   A +LA  G RV+ A R         + +        C  +
Sbjct: 6   DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAAR-------NAAALDRLAGETGCEPL 58

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL--GFSHTEDGFETTFQVNHLAHFY 237
            L++    +++           + + LV  AG+  L      T +GF+    VN      
Sbjct: 59  RLDVGDDAAIRAALAAAG----AFDGLVNCAGIASLESALDMTAEGFDRVMAVN------ 108

Query: 238 LTLQLENALIKGAKLFAR---QQGAATSIYCATS 268
                  A +  A+  AR     G   SI   +S
Sbjct: 109 ----ARGAAL-VARHVARAMIAAGRGGSIVNVSS 137

Length = 245

>gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE--KPSAQCI 177
            L    AIVTG   G+G   AR L   G +V+L            S IL E  + +A  +
Sbjct: 2   RLKGKVAIVTGGARGLGLAHARLLVAEGAKVVL------------SDILDEEGQAAAAEL 49

Query: 178 AMELNLCRLKSV-----KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTE--DGFETTFQV 230
                   L            +  ++ F  L++LV NAG+   G   T   + +     +
Sbjct: 50  GDAARFFHLDVTDEDGWTAVVDTAREAFGRLDVLVNNAGILTGGTVETTTLEEWRRLLDI 109

Query: 231 N 231
           N
Sbjct: 110 N 110

This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247

>gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
             L +  AIVTG + GIG      L   G  VI     + + +                 
Sbjct: 2   LGLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINF--DIKEPSYNDVDYF---------- 49

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            ++++   + V K  +    K+  ++ILV NAG+
Sbjct: 50  -KVDVSNKEQVIKGIDYVISKYGRIDILVNNAGI 82

Length = 258

>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 59 PLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          P GWE+    DG++ +YN +T    + DPR 
Sbjct: 1  PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31

Length = 31

>gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA +GIG   AR L   G RV +  R  +     + ++      A         C 
Sbjct: 6   ALVTGATSGIGLAIARRLGKEGLRVFVCARGEEGLATTVKELREAGVEADGRT-----CD 60

Query: 186 LKS---VKKFAEEYQKKFRSLNILVLNAGVFGLG 216
           ++S   ++        ++  +++LV NAG  G G
Sbjct: 61  VRSVPEIEALVAAAVARYGPIDVLVNNAGRSGGG 94

Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258

>gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +VTGA  GIG   A   A  G RV+L  RS +  ++  +++       + +A+  +L  
Sbjct: 11  VVVTGAAQGIGRGVALRAAAEGARVVLVDRS-ELVHEVAAEL--RAAGGEALALTADLET 67

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAG 211
               +       + F  +++L+ N G
Sbjct: 68  YAGAQAAMAAAVEAFGRIDVLINNVG 93

Length = 260

>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 111 KALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA 163
           KAL+ L G+DL    A+V G    +G   A  LA  G RV+L  R L++A  A
Sbjct: 17  KALE-LMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKA 68

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 194

>gnl|CDD|181605 PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrogenase; Validated

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 115 ILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA 174
           IL    L    A+VTG +TG+G   A  LA  GC ++    ++ +  + I ++       
Sbjct: 2   ILDAFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI--NIVEPTETIEQV--TALGR 57

Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           + +++  +L ++  +    E    +F  ++ILV NAG+
Sbjct: 58  RFLSLTADLRKIDGIPALLERAVAEFGHIDILVNNAGL 95

Length = 253

>gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME-LNL 183
              VTGA +GIG  TA  LA  G  + L  R  D     ++                L++
Sbjct: 2   RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARAL--GGTVPEHRALDI 59

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
               +V  FA +      S+++++  AG+
Sbjct: 60  SDYDAVAAFAADIHAAHGSMDVVMNIAGI 88

Length = 272

>gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 14/142 (9%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA--QCIAMELNL 183
            +VTGA  GIG   A  LA  G RV+L  RS     + + ++L E  +A         +L
Sbjct: 7   VVVTGAAQGIGRGVAERLAGEGARVLLVDRS-----ELVHEVLAEILAAGDAAHVHTADL 61

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAG--VFGLGFSHTEDGFETTFQVNHLAHFYLTLQ 241
                 +       ++F  +++L+ N G  ++   + H E   E   +       + TL 
Sbjct: 62  ETYAGAQGVVRAAVERFGRVDVLINNVGGTIWAKPYEHYE---EEQIEAEIRRSLFPTLW 118

Query: 242 LENALIKGAKLFARQQGAATSI 263
              A++    +  RQQG   ++
Sbjct: 119 CCRAVL--PHMLERQQGVIVNV 138

DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLD 158
           ++TG ++GIG   AR+L   G RV   CR  +
Sbjct: 8   LITGCSSGIGAYCARALQSDGWRVFATCRKEE 39

Length = 277

>gnl|CDD|227632 COG5322, COG5322, Predicted dehydrogenase [General function prediction only]

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 17/60 (28%), Positives = 21/60 (35%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           G DLS     + GA   I    AR LA       L  R  +  N     +L E+     I
Sbjct: 162 GIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKI 221

Length = 351

>gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 18/141 (12%)

Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
             ++TGA++G+G   AR  A  G  + L  R  D+  +  +++L   P  +     L++ 
Sbjct: 4   KILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVN 63

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGV-----FGLGFSHT-EDGFETTFQVNHLAHFYL 238
               V +   E++ +   L+ +++NAG+      G G     +   ET F V  LA    
Sbjct: 64  DHDQVFEVFAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNF-VAALA---- 118

Query: 239 TLQLENALIKGAKLFARQQGA 259
             Q E A+    ++F R+QG+
Sbjct: 119 --QCEAAM----EIF-REQGS 132

Length = 248

>gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 13/119 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVIL--ACRSLD---------KANDAISKILTEKPSA 174
           A +TGA  G G   A  LA  G  +I    C  L          + +   +  L E    
Sbjct: 6   AFITGAARGQGRAHAVRLAAEGADIIAIDLCAPLSDYPTYPLATREDLDETARLVEALGR 65

Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
           + +A + ++  L  V+   E+  ++F  L+++V NAGV   G S   +E+ ++T   +N
Sbjct: 66  KVLARKADVRDLAEVRAVVEDGVEQFGRLDVVVANAGVLSYGRSWELSEEQWDTVLDIN 124

Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265

>gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 13/108 (12%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A++T A  GIG   A + A  G  VI         N+   K L   P        L++  
Sbjct: 5   ALITAAAQGIGRAIALAFAREGANVIAT-----DINEEKLKELERGP--GITTRVLDVTD 57

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 231
            + V   A+E       +++L   AG    G      +D ++    +N
Sbjct: 58  KEQVAALAKE----EGRIDVLFNCAGFVHHGSILDCEDDDWDFAMNLN 101

Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241

>gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK 187
           +TGA +G+G   A   A  G R+ LA  + ++  +   K+L E           ++    
Sbjct: 5   ITGAASGLGRAIALRWAREGWRLALADVN-EEGGEETLKLLRE-AGGDGFYQRCDVRDYS 62

Query: 188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGF 217
            +   A+  ++K+  ++++V NAGV   GF
Sbjct: 63  QLTALAQACEEKWGGIDVIVNNAGVASGGF 92

Length = 270

>gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            I+TGA+ GIG  TA   A  G  V L       A +A+ + +  +   + +A+  ++  
Sbjct: 5   MIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQ-GGEALAVAADVAD 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
              V +  E   ++   L+ LV NAG+
Sbjct: 64  EADVLRLFEAVDRELGRLDALVNNAGI 90

Length = 248

>gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN 161
             L+   AIVTG  T IG   AR+L   G RV +     D   
Sbjct: 2   IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGA 44

Length = 261

>gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVT +++GIG   A  LA  G  + +   S ++     ++        +    +L+L  
Sbjct: 5   AIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAE-EVRSHGVRAEIRQLDLSD 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
           L    +  ++  ++   +++LV NAG 
Sbjct: 64  LPEGAQALDKLIQRLGRIDVLVNNAGA 90

Length = 256

>gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK 187
           +TGA+ G G     +    G RV+   R      D     L EK   + + + L++    
Sbjct: 8   ITGASRGFGRAWTEAALERGDRVVATARDTATLAD-----LAEKYGDRLLPLALDVTDRA 62

Query: 188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
           +V    E   + F  L+I+V NAG    G     TE         N
Sbjct: 63  AVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTN 108

Length = 275

>gnl|CDD|215899 pfam00397, WW, WW domain

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 58 LPLGWEKSVSEDGKITFYNKDTHVKTYTDP 87
          LP GWE+    DG+  +YN +T    +  P
Sbjct: 1  LPPGWEERTDTDGRPYYYNHNTGETQWERP 30

The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Length = 30

>gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 128 VTGANTGIGFETARSLA-LHGCRVILACRS-LDKANDAISKILTE--KPSAQCIAMELNL 183
           VTG   GIG   AR+LA  +G R++L  RS L    +  ++ L       A+ + +  ++
Sbjct: 210 VTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWKAQTLAALEALGARVLYISADV 269

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQV 230
               +V++  E+ ++++ +++ ++  AGV    L    T + FE     
Sbjct: 270 TDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKTAEDFEAVLAP 318

Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436

>gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 127 IVTGANTGIGFETARSLALHGCR-VILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           ++TG   G+G   AR LA  G R ++L  R       A    L     A+   +  ++  
Sbjct: 154 LITGGLGGLGLLVARWLAARGARHLVLLSRRGPAPRAAARAALLRAGGARVSVVRCDVTD 213

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQ 229
             ++     E       L  ++  AGV    L    T   F     
Sbjct: 214 PAALAALLAELA-AGGPLAGVIHAAGVLRDALLAELTPAAFAAVLA 258

Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375

>gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 12/146 (8%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L +  AIVTG   GIG  T R  A  G +V +   + + A    + I  +  +AQ  A +
Sbjct: 1   LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACD 60

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAG--VFGLGFSHTEDG-FETTFQVNHLAHFY 237
           +      SV       ++    +++LV NAG   FG  F+ TE   +E    +N      
Sbjct: 61  IT--DRDSVDTAVAAAEQALGPVDVLVNNAGWDKFG-PFTKTEPPLWERLIAIN----LT 113

Query: 238 LTLQLENALIKGAKLFARQQGAATSI 263
             L + +A++ G  +  R  G   +I
Sbjct: 114 GALHMHHAVLPG--MVERGAGRIVNI 137

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250

>gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAM 179
           LS   A+VTGA+ GIG   A  L   G  V +  R+ L +      +I  E    +CI +
Sbjct: 1   LSGKIALVTGASRGIGRGIALQLGEAGATVYITGRTILPQLPGTAEEI--EARGGKCIPV 58

Query: 180 ELNLCRLKSVKKF----AEEYQKKFRSLNILVLNA-GVFGLGFSHTEDGF 224
             +      V+      A E Q +   L+ILV NA     L        F
Sbjct: 59  RCDHSDDDEVEALFERVAREQQGR---LDILVNNAYAAVQLILVGVAKPF 105

This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265

>gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +VTGA+ G+G   ARS A  G RV++      ++ +A++     +   + IA++ ++  
Sbjct: 3   VLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAVA----AEAGERAIAIQADVRD 58

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNA 210
              V+   EE +  F  ++ +V NA
Sbjct: 59  RDQVQAMIEEAKNHFGPVDTIVNNA 83

This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A V GA  G+G   AR  A  G  V LA R   K  +A+   +         A+  +   
Sbjct: 2   AAVVGAGDGLGAAIARRFAAEGFSVALAARREAKL-EALLVDIIRDAGGSAKAVPTDARD 60

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAG 211
              V    +  +++   L +LV NAG
Sbjct: 61  EDEVIALFDLIEEEIGPLEVLVYNAG 86

This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238

>gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRS 156
           +S+   +VTGA  GIG   +  LA  G +VI   RS
Sbjct: 1   MSSRTVLVTGATKGIGLALSLRLANLGHQVIGIARS 36

Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	100.0
KOG1200|consensus	256		100.0
KOG1205|consensus	282		100.0
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.98
PRK08339	263	short chain dehydrogenase; Provisional	99.98
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
KOG0725|consensus	270		99.97
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.97
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.97
PRK07063	260	short chain dehydrogenase; Provisional	99.97
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
KOG1201|consensus	300		99.97
PRK07062	265	short chain dehydrogenase; Provisional	99.97
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
PRK05867	253	short chain dehydrogenase; Provisional	99.97
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.97
PRK08303	305	short chain dehydrogenase; Provisional	99.96
PRK07478	254	short chain dehydrogenase; Provisional	99.96
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.96
PRK06114	254	short chain dehydrogenase; Provisional	99.96
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.96
KOG1208|consensus	314		99.96
PRK08589	272	short chain dehydrogenase; Validated	99.96
PRK07791	286	short chain dehydrogenase; Provisional	99.96
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.96
PRK08265	261	short chain dehydrogenase; Provisional	99.96
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.96
PRK07985	294	oxidoreductase; Provisional	99.96
PRK06128	300	oxidoreductase; Provisional	99.96
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.96
PRK05872	296	short chain dehydrogenase; Provisional	99.96
PRK06398	258	aldose dehydrogenase; Validated	99.96
PRK07831	262	short chain dehydrogenase; Provisional	99.96
KOG4169|consensus	261		99.96
PRK12747	252	short chain dehydrogenase; Provisional	99.96
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.96
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.95
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.95
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.95
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.95
PRK06139	330	short chain dehydrogenase; Provisional	99.95
PRK08862	227	short chain dehydrogenase; Provisional	99.95
PRK06172	253	short chain dehydrogenase; Provisional	99.95
PRK09242	257	tropinone reductase; Provisional	99.95
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.95
PRK07035	252	short chain dehydrogenase; Provisional	99.95
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.95
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.95
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.95
PRK06125	259	short chain dehydrogenase; Provisional	99.95
PRK05717	255	oxidoreductase; Validated	99.95
PRK07109	334	short chain dehydrogenase; Provisional	99.95
KOG1207|consensus	245		99.95
PRK07677	252	short chain dehydrogenase; Provisional	99.95
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.95
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.95
PRK06484	520	short chain dehydrogenase; Validated	99.95
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.95
PLN02253	280	xanthoxin dehydrogenase	99.95
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.95
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.94
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.94
KOG1199|consensus	260		99.94
PRK07067	257	sorbitol dehydrogenase; Provisional	99.94
PRK07856	252	short chain dehydrogenase; Provisional	99.94
PRK08643	256	acetoin reductase; Validated	99.94
PRK05876	275	short chain dehydrogenase; Provisional	99.94
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.94
PRK05854	313	short chain dehydrogenase; Provisional	99.94
PRK06940	275	short chain dehydrogenase; Provisional	99.94
PRK07576	264	short chain dehydrogenase; Provisional	99.94
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.94
PRK06483	236	dihydromonapterin reductase; Provisional	99.94
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.94
PRK07814	263	short chain dehydrogenase; Provisional	99.94
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.94
PRK08278	273	short chain dehydrogenase; Provisional	99.94
PRK06523	260	short chain dehydrogenase; Provisional	99.94
PRK07890	258	short chain dehydrogenase; Provisional	99.94
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.94
PRK12743	256	oxidoreductase; Provisional	99.94
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.94
PRK08226	263	short chain dehydrogenase; Provisional	99.94
PRK06182	273	short chain dehydrogenase; Validated	99.94
PRK06500	249	short chain dehydrogenase; Provisional	99.94
PRK08628	258	short chain dehydrogenase; Provisional	99.93
PRK06484	520	short chain dehydrogenase; Validated	99.93
PRK06841	255	short chain dehydrogenase; Provisional	99.93
PRK06949	258	short chain dehydrogenase; Provisional	99.93
PRK06196	315	oxidoreductase; Provisional	99.93
PRK05599	246	hypothetical protein; Provisional	99.93
PRK06180	277	short chain dehydrogenase; Provisional	99.93
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.93
PRK06701	290	short chain dehydrogenase; Provisional	99.93
PRK09186	256	flagellin modification protein A; Provisional	99.93
PRK05855	582	short chain dehydrogenase; Validated	99.93
PRK06197	306	short chain dehydrogenase; Provisional	99.93
PRK12937	245	short chain dehydrogenase; Provisional	99.93
PRK08263	275	short chain dehydrogenase; Provisional	99.93
PRK12744	257	short chain dehydrogenase; Provisional	99.93
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.93
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.93
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.93
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.93
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.92
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.92
PRK12939	250	short chain dehydrogenase; Provisional	99.92
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.92
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.92
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.92
PRK05875	276	short chain dehydrogenase; Provisional	99.92
PRK06138	252	short chain dehydrogenase; Provisional	99.92
PLN02780	320	ketoreductase/ oxidoreductase	99.92
PRK07825	273	short chain dehydrogenase; Provisional	99.92
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.92
PRK07832	272	short chain dehydrogenase; Provisional	99.92
PRK09134	258	short chain dehydrogenase; Provisional	99.92
PRK06123	248	short chain dehydrogenase; Provisional	99.92
PRK06914	280	short chain dehydrogenase; Provisional	99.92
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.92
KOG1209|consensus	289		99.92
PRK07774	250	short chain dehydrogenase; Provisional	99.92
PRK05866	293	short chain dehydrogenase; Provisional	99.92
PRK09072	263	short chain dehydrogenase; Provisional	99.92
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.92
PRK06194	287	hypothetical protein; Provisional	99.92
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.92
PRK06179	270	short chain dehydrogenase; Provisional	99.92
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.92
PRK12742	237	oxidoreductase; Provisional	99.92
PRK06057	255	short chain dehydrogenase; Provisional	99.92
PRK10538	248	malonic semialdehyde reductase; Provisional	99.92
PRK06198	260	short chain dehydrogenase; Provisional	99.92
PRK05650	270	short chain dehydrogenase; Provisional	99.91
PRK05993	277	short chain dehydrogenase; Provisional	99.91
PRK07454	241	short chain dehydrogenase; Provisional	99.91
PRK07069	251	short chain dehydrogenase; Validated	99.91
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.91
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.91
PRK12746	254	short chain dehydrogenase; Provisional	99.91
PLN00015	308	protochlorophyllide reductase	99.91
KOG1610|consensus	322		99.91
PRK07775	274	short chain dehydrogenase; Provisional	99.91
COG1028	251	FabG Dehydrogenases with different specificities (	99.91
PRK08703	239	short chain dehydrogenase; Provisional	99.91
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.91
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.91
PRK07024	257	short chain dehydrogenase; Provisional	99.91
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.9
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.9
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.9
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.9
PRK05693	274	short chain dehydrogenase; Provisional	99.9
PRK08267	260	short chain dehydrogenase; Provisional	99.9
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.9
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.9
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.9
PRK08251	248	short chain dehydrogenase; Provisional	99.9
PRK06924	251	short chain dehydrogenase; Provisional	99.9
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.9
PRK07904	253	short chain dehydrogenase; Provisional	99.89
PRK05884	223	short chain dehydrogenase; Provisional	99.89
PRK06482	276	short chain dehydrogenase; Provisional	99.89
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.89
PRK09135	249	pteridine reductase; Provisional	99.89
PRK06181	263	short chain dehydrogenase; Provisional	99.89
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.89
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.89
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.89
PRK07806	248	short chain dehydrogenase; Provisional	99.89
PRK12827	249	short chain dehydrogenase; Provisional	99.89
KOG1014|consensus	312		99.88
PRK12828	239	short chain dehydrogenase; Provisional	99.88
PRK08324	681	short chain dehydrogenase; Validated	99.88
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK12829	264	short chain dehydrogenase; Provisional	99.88
PRK07201	657	short chain dehydrogenase; Provisional	99.88
PRK07041	230	short chain dehydrogenase; Provisional	99.88
PRK07074	257	short chain dehydrogenase; Provisional	99.88
PRK12367	245	short chain dehydrogenase; Provisional	99.87
PRK07023	243	short chain dehydrogenase; Provisional	99.87
PRK07060	245	short chain dehydrogenase; Provisional	99.87
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	99.87
KOG1210|consensus	331		99.87
PRK07577	234	short chain dehydrogenase; Provisional	99.86
PRK07326	237	short chain dehydrogenase; Provisional	99.86
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.86
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.86
PRK06101	240	short chain dehydrogenase; Provisional	99.86
KOG1611|consensus	249		99.86
PRK07102	243	short chain dehydrogenase; Provisional	99.85
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.85
PRK06720	169	hypothetical protein; Provisional	99.85
PRK07578	199	short chain dehydrogenase; Provisional	99.85
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.84
PRK09291	257	short chain dehydrogenase; Provisional	99.84
PRK08017	256	oxidoreductase; Provisional	99.82
PRK08177	225	short chain dehydrogenase; Provisional	99.82
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.81
PRK08264	238	short chain dehydrogenase; Validated	99.81
KOG1478|consensus	341		99.79
PRK06953	222	short chain dehydrogenase; Provisional	99.79
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.79
PRK08219	227	short chain dehydrogenase; Provisional	99.78
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.76
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.75
KOG1204|consensus	253		99.71
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.69
PLN03209	576	translocon at the inner envelope of chloroplast su	99.65
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	99.61
KOG1891|consensus	271		99.6
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.59
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.58
PLN02653	340	GDP-mannose 4,6-dehydratase	99.57
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.55
PLN02572	442	UDP-sulfoquinovose synthase	99.44
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.43
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.41
PLN02214	342	cinnamoyl-CoA reductase	99.41
PLN00198	338	anthocyanidin reductase; Provisional	99.39
PLN02240	352	UDP-glucose 4-epimerase	99.39
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.38
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.37
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.37
KOG3209|consensus	984		99.36
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.33
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.31
PLN02583	297	cinnamoyl-CoA reductase	99.31
PLN02650	351	dihydroflavonol-4-reductase	99.3
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.29
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.28
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.24
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	99.23
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.21
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.21
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.2
KOG1502|consensus	327		99.19
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.18
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.16
KOG1371|consensus	343		99.15
PRK08309	177	short chain dehydrogenase; Provisional	99.12
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.11
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.11
PF00397	31	WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp	99.1
PLN02686	367	cinnamoyl-CoA reductase	99.09
PLN02427	386	UDP-apiose/xylose synthase	99.08
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.03
smart00456	32	WW Domain with 2 conserved Trp (W) residues. Also	99.01
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	98.96
TIGR01746	367	Thioester-redct thioester reductase domain. It has	98.95
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	98.93
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.9
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	98.89
CHL00194	317	ycf39 Ycf39; Provisional	98.88
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.87
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	98.86
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	98.85
PLN02260	668	probable rhamnose biosynthetic enzyme	98.85
cd00201	31	WW Two conserved tryptophans domain; also known as	98.84
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.82
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	98.81
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.81
PLN02206	442	UDP-glucuronate decarboxylase	98.79
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.79
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.77
PRK05865	854	hypothetical protein; Provisional	98.77
PLN02778	298	3,5-epimerase/4-reductase	98.74
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	98.7
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.7
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	98.69
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.68
PLN02996	491	fatty acyl-CoA reductase	98.65
KOG0940|consensus	358		98.65
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	98.64
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.64
KOG3259|consensus	163		98.64
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	98.63
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.62
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.62
PLN02503	605	fatty acyl-CoA reductase 2	98.6
PF00397	31	WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp	98.58
PRK07201	657	short chain dehydrogenase; Provisional	98.56
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.55
smart00456	32	WW Domain with 2 conserved Trp (W) residues. Also	98.47
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	98.46
PLN02260	668	probable rhamnose biosynthetic enzyme	98.46
KOG1430|consensus	361		98.41
KOG3209|consensus	984		98.39
PRK12320	699	hypothetical protein; Provisional	98.38
PF08643	299	DUF1776: Fungal family of unknown function (DUF177	98.37
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.27
cd00201	31	WW Two conserved tryptophans domain; also known as	98.27
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	98.25
KOG1202|consensus	2376		98.21
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.2
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	98.13
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.11
COG4982	866	3-oxoacyl-[acyl-carrier protein]	98.05
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.05
PRK09620	229	hypothetical protein; Provisional	98.05
KOG1429|consensus	350		98.03
KOG1221|consensus	467		98.02
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	98.02
PLN00016	378	RNA-binding protein; Provisional	97.96
KOG4022|consensus	236		97.95
COG3320	382	Putative dehydrogenase domain of multifunctional n	97.94
KOG2865|consensus	391		97.91
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	97.89
PRK14982	340	acyl-ACP reductase; Provisional	97.88
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	97.87
KOG2733|consensus	423		97.79
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.7
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.68
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.59
KOG1372|consensus	376		97.59
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.57
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.51
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.5
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.48
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.43
KOG0747|consensus	331		97.39
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.38
PTZ00325	321	malate dehydrogenase; Provisional	97.36
COG2910	211	Putative NADH-flavin reductase [General function p	97.25
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.21
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.16
PLN00106	323	malate dehydrogenase	97.16
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.14
PRK06849	389	hypothetical protein; Provisional	97.14
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.13
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	97.12
COG3268	382	Uncharacterized conserved protein [Function unknow	97.11
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.07
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.05
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.04
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.03
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.03
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.03
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.03
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	97.01
KOG0155|consensus	617		97.0
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.0
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	96.99
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.98
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.97
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	96.95
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	96.95
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.95
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.93
KOG3259|consensus	163		96.92
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.92
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.91
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	96.9
KOG3552|consensus	1298		96.89
KOG1431|consensus	315		96.87
PRK08223	287	hypothetical protein; Validated	96.85
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.82
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.8
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.79
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.77
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.76
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.76
PRK08328	231	hypothetical protein; Provisional	96.74
KOG1891|consensus	271		96.71
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.65
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	96.64
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.63
PRK07877	722	hypothetical protein; Provisional	96.61
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.59
KOG1198|consensus	347		96.59
KOG1203|consensus	411		96.55
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.54
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.52
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.52
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	96.51
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	96.51
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.5
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.49
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.49
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.48
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.47
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.46
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.46
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.44
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.41
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.4
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.37
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	96.36
PRK05086	312	malate dehydrogenase; Provisional	96.35
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.33
KOG2774|consensus	366		96.31
PRK04148	134	hypothetical protein; Provisional	96.31
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	96.31
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.3
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	96.29
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	96.26
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.23
PRK14851	679	hypothetical protein; Provisional	96.23
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.21
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.21
PRK14968	188	putative methyltransferase; Provisional	96.2
PRK07411	390	hypothetical protein; Validated	96.18
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.16
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.16
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.14
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	96.09
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	96.04
PLN00203	519	glutamyl-tRNA reductase	96.03
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.92
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.91
PRK14852	989	hypothetical protein; Provisional	95.88
PRK09496	453	trkA potassium transporter peripheral membrane com	95.87
KOG2013|consensus	603		95.86
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	95.84
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.81
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.8
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.75
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	95.73
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.72
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.71
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	95.67
COG3007	398	Uncharacterized paraquat-inducible protein B [Func	95.61
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	95.61
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	95.6
PLN02740	381	Alcohol dehydrogenase-like	95.59
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	95.55
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	95.54
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	95.49
PRK12480	330	D-lactate dehydrogenase; Provisional	95.49
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.49
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.49
KOG4039|consensus	238		95.48
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.48
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.47
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.44
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.44
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.43
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.42
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.4
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	95.35
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	95.33
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	95.32
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	95.32
KOG0023|consensus	360		95.29
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.27
PTZ00354	334	alcohol dehydrogenase; Provisional	95.17
PLN02178	375	cinnamyl-alcohol dehydrogenase	95.17
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.16
PRK08655	437	prephenate dehydrogenase; Provisional	95.12
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.11
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.1
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.09
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	95.08
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	95.07
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.06
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.05
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	95.02
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.01
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	94.99
PRK09496	453	trkA potassium transporter peripheral membrane com	94.99
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.98
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	94.96
PRK13243	333	glyoxylate reductase; Reviewed	94.95
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	94.93
COG2130	340	Putative NADP-dependent oxidoreductases [General f	94.92
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	94.84
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.79
KOG0024|consensus	354		94.78
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.76
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	94.75
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	94.75
PLN02827	378	Alcohol dehydrogenase-like	94.73
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	94.69
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.66
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	94.66
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	94.6
PLN02494	477	adenosylhomocysteinase	94.58
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.57
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.54
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.47
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	94.43
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	94.41
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	94.4
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.4
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	94.38
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	94.37
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.37
COG5322	351	Predicted dehydrogenase [General function predicti	94.37
PTZ00117	319	malate dehydrogenase; Provisional	94.35
PRK13771	334	putative alcohol dehydrogenase; Provisional	94.32
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.26

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=100.00  E-value=2.4e-36  Score=257.91  Aligned_cols=204  Identities=22%  Similarity=0.227  Sum_probs=165.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+++|+++|||||||||.++|+.|+++|++|++++|+.++++++..++.+    .++..+.+|++|.++++++++.+.++
T Consensus         3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~~~   78 (246)
T COG4221           3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALPEE   78 (246)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999988843    57899999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      |++||+||||||..  .+..+.+.++|++++++|+.|.++.+++++|.|.++        ||++|..+.++..+|+++|+
T Consensus        79 ~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~~vY~ATK~  158 (246)
T COG4221          79 FGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKA  158 (246)
T ss_pred             hCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCCccchhhHH
Confidence            99999999999985  667889999999999999999999999999999987        89999999999999999999


Q ss_pred             cccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHH-HhcccccccccccccC
Q psy4246         270 DLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSV-VSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~g~p~dia~~v~F  328 (328)
                      ++. .++-       ....++..+.|+...+.....-......++..+.. -.-..+|+|||.+|+|
T Consensus       159 aV~-~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~~~~~l~p~dIA~~V~~  224 (246)
T COG4221         159 AVR-AFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYKGGTALTPEDIAEAVLF  224 (246)
T ss_pred             HHH-HHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhccCCCCCHHHHHHHHHH
Confidence            998 6551       23345555666655332110000000111111111 3457889999998876

>KOG1200|consensus

Probab=100.00  E-value=1.7e-35  Score=241.68  Aligned_cols=204  Identities=20%  Similarity=0.215  Sum_probs=174.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+..|+++||||++|||+++++.|+++|++|++++++...+++.+..|..   ......+.||+++..+++.++++..+.
T Consensus        11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g---~~~h~aF~~DVS~a~~v~~~l~e~~k~   87 (256)
T KOG1200|consen   11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG---YGDHSAFSCDVSKAHDVQNTLEEMEKS   87 (256)
T ss_pred             HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC---CCccceeeeccCcHHHHHHHHHHHHHh
Confidence            36789999999999999999999999999999999998877777666532   146778999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------cccceecccccchhhhcc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------ss~~~~~~~~~~~~y~as  267 (328)
                      +|++++||||||+.  ..+..+..++|++.+.+|+.|.|+++|++.+.|...          |||.+..+..++..|+|+
T Consensus        88 ~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQtnYAAs  167 (256)
T KOG1200|consen   88 LGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAAS  167 (256)
T ss_pred             cCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccchhhhhh
Confidence            99999999999997  345788999999999999999999999999985443          788899999999999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHH-HhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSV-VSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~g~p~dia~~v~F  328 (328)
                      |+++. +++.       ...++||...|++.++++...- -.+...++.+.+ ++|+|++||||+.|+|
T Consensus       168 K~GvI-gftktaArEla~knIrvN~VlPGFI~tpMT~~m-p~~v~~ki~~~iPmgr~G~~EevA~~V~f  234 (256)
T KOG1200|consen  168 KGGVI-GFTKTAARELARKNIRVNVVLPGFIATPMTEAM-PPKVLDKILGMIPMGRLGEAEEVANLVLF  234 (256)
T ss_pred             cCcee-eeeHHHHHHHhhcCceEeEeccccccChhhhhc-CHHHHHHHHccCCccccCCHHHHHHHHHH
Confidence            99999 9983       4567889899999988865431 122334444443 9999999999999987

>KOG1205|consensus

Probab=100.00  E-value=3.8e-33  Score=246.64  Aligned_cols=158  Identities=23%  Similarity=0.320  Sum_probs=145.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +..+.||+|+|||||+|||.++|++|+++|++++++.|..++++...+++++..+..+++.++||++|.++++++++++.
T Consensus         7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~   86 (282)
T KOG1205|consen    7 MERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI   86 (282)
T ss_pred             HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999988888887655479999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.||++|+||||||+.  ....+.+.+++..+|++|++|+.+++++++|+|+++        +|+.|..+.+...+|+||
T Consensus        87 ~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~~~Y~AS  166 (282)
T KOG1205|consen   87 RHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSAS  166 (282)
T ss_pred             HhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcccccchH
Confidence            9999999999999985  444677889999999999999999999999999987        788899999998999999


Q ss_pred             CccccCCCC
Q psy4246         268 SLDLSLPVS  276 (328)
Q Consensus       268 k~al~~~~~  276 (328)
                      |+|+. ++.
T Consensus       167 K~Al~-~f~  174 (282)
T KOG1205|consen  167 KHALE-GFF  174 (282)
T ss_pred             HHHHH-HHH
Confidence            99999 665

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.98  E-value=4.7e-32  Score=237.98  Aligned_cols=174  Identities=22%  Similarity=0.252  Sum_probs=156.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+.++++||||||+|||.++|+.|+++|++|++++|+.++++++.+++...+ +.++.++.+|+++++++..+.+++.+.
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHhc
Confidence            4688999999999999999999999999999999999999999999999876 789999999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      .+.||+||||||+.  +++.+.+.++.+++|++|+.++..|+++++|.|.++        +|+++..+.+..++|+|||+
T Consensus        82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~avY~ATKa  161 (265)
T COG0300          82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKA  161 (265)
T ss_pred             CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcchHHHHHHHH
Confidence            99999999999984  778999999999999999999999999999999986        77889999999999999999


Q ss_pred             cccCCCC-------ccccccCccCCCCcccCCH
Q psy4246         270 DLSLPVS-------GSYFNNCCRCPPSKAAQDE  295 (328)
Q Consensus       270 al~~~~~-------g~~~~~~~~~~~~~~~~~~  295 (328)
                      ++. +++       ..+...+...+|++..++.
T Consensus       162 ~v~-~fSeaL~~EL~~~gV~V~~v~PG~~~T~f  193 (265)
T COG0300         162 FVL-SFSEALREELKGTGVKVTAVCPGPTRTEF  193 (265)
T ss_pred             HHH-HHHHHHHHHhcCCCeEEEEEecCcccccc
Confidence            998 666       2334455556666666543

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.98  E-value=8.3e-32  Score=241.61  Aligned_cols=207  Identities=19%  Similarity=0.222  Sum_probs=167.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.... +.++.++.+|++|+++++++++++. 
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~-   81 (263)
T PRK08339          4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELK-   81 (263)
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHH-
Confidence            46899999999999999999999999999999999999988887777775542 4578899999999999999999985 


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .+|++|+||||||+.  .++.+.+.++|++++++|+.++++++++++|+|+++        ||+.+..+.+....|+++|
T Consensus        82 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~~~~~y~asK  161 (263)
T PRK08339         82 NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPNIALSNVVR  161 (263)
T ss_pred             hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCCcchhhHHHH
Confidence            589999999999975  456788999999999999999999999999999765        4555666677888999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHHHH----------HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATK----------LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +++. +++       +.+.++++.+.|+...++......          ..+..+.+.+. +++|+++|+|||.+++|
T Consensus       162 aal~-~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~f  238 (263)
T PRK08339        162 ISMA-GLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPIPLGRLGEPEEIGYLVAF  238 (263)
T ss_pred             HHHH-HHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccCCcccCcCHHHHHHHHHH
Confidence            9998 766       345567787888877665321100          01111122222 38999999999998876

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=9.1e-32  Score=242.71  Aligned_cols=205  Identities=12%  Similarity=0.128  Sum_probs=158.4

Q ss_pred             CCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|+||++|||||+  +|||+++|+.|+++|++|++++|+.+ ..+..+++.... +.. .++.||++|.++++++++++.
T Consensus         2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~-~~~-~~~~~Dv~d~~~v~~~~~~i~   78 (274)
T PRK08415          2 IMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQEL-GSD-YVYELDVSKPEHFKSLAESLK   78 (274)
T ss_pred             ccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhc-CCc-eEEEecCCCHHHHHHHHHHHH
Confidence            4689999999997  89999999999999999999999853 233344443333 223 678999999999999999999


Q ss_pred             HhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhh
Q psy4246         198 KKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYC  265 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~  265 (328)
                      +++|++|+||||||+.      .++.+.+.++|+++|++|+.|+++++++++|+|.+.      ||+.+..+.+....|+
T Consensus        79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~~~~~~Y~  158 (274)
T PRK08415         79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKYVPHYNVMG  158 (274)
T ss_pred             HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccCCCcchhhh
Confidence            9999999999999984      345788999999999999999999999999999876      4445555667788999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHH-HHHHHHHHH-HHHHHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALA-TKLWKLSEE-MIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++|+|+. +++.       .+..+++.+.|+...++.... .......+. ....+++|+++|+|||.+++|
T Consensus       159 asKaal~-~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~r~~~pedva~~v~f  229 (274)
T PRK08415        159 VAKAALE-SSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEINAPLKKNVSIEEVGNSGMY  229 (274)
T ss_pred             hHHHHHH-HHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhhCchhccCCHHHHHHHHHH
Confidence            9999998 7773       345667777888776643210 000000011 112358999999999999876

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=3.9e-32  Score=242.26  Aligned_cols=205  Identities=12%  Similarity=0.104  Sum_probs=159.6

Q ss_pred             CCCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       118 ~~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ...|+||++|||||+  +|||+++|++|+++|++|++++|+. +..+..+++.    +.++.+++||++|++++++++++
T Consensus         2 ~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~   76 (252)
T PRK06079          2 SGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLV----DEEDLLVECDVASDESIERAFAT   76 (252)
T ss_pred             ccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhc----cCceeEEeCCCCCHHHHHHHHHH
Confidence            345899999999999  8999999999999999999999983 4444444432    23678899999999999999999


Q ss_pred             HHHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccc------cceecccccchh
Q psy4246         196 YQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK------LFARQQGAATSI  263 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss------~~~~~~~~~~~~  263 (328)
                      +.+++|++|+||||||+.      +++.+.+.++|++++++|+.++++++++++|+|.+.++      +.+..+.++...
T Consensus        77 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~~~~~~  156 (252)
T PRK06079         77 IKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAIPNYNV  156 (252)
T ss_pred             HHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccCCcchh
Confidence            999999999999999975      35578899999999999999999999999999976643      344555677889


Q ss_pred             hhccCccccCCCCc-------cccccCccCCCCcccCCHHHH-HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALA-TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++|+++. +++.       .+..+++.+.|+...++.... ....+..+...+ .+++|+++|+|||.+++|
T Consensus       157 Y~asKaal~-~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~  229 (252)
T PRK06079        157 MGIAKAALE-SSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTVDGVGVTIEEVGNTAAF  229 (252)
T ss_pred             hHHHHHHHH-HHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCcccCCCCHHHHHHHHHH
Confidence            999999999 7773       344567777787776653110 000111112222 247999999999999876

>KOG0725|consensus

Probab=99.97  E-value=1.3e-31  Score=239.76  Aligned_cols=210  Identities=20%  Similarity=0.242  Sum_probs=167.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC-CCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK-PSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ...|.||++|||||++|||+++|++|++.|++|++++|+.+.+++...++.... .+.++..+.||+++.++++++++..
T Consensus         3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~   82 (270)
T KOG0725|consen    3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA   82 (270)
T ss_pred             CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999999988888776543 2467999999999999999999999


Q ss_pred             HHh-cCCccEEEEccccCC---CCCCCChhHHHHHHhhhhHH-HHHHHHHHHHHHHhc--------cccceecccccc-h
Q psy4246         197 QKK-FRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLA-HFYLTLQLENALIKG--------AKLFARQQGAAT-S  262 (328)
Q Consensus       197 ~~~-~g~id~lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g-~~~l~~~~~~~~~~~--------ss~~~~~~~~~~-~  262 (328)
                      .++ +|+||+||||||...   +..++++++|++++++|+.| .+.+.+.+.++++++        +++.+..+.... .
T Consensus        83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~~~~  162 (270)
T KOG0725|consen   83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGSGV  162 (270)
T ss_pred             HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCcc
Confidence            999 799999999999853   56899999999999999995 677777777777774        333444444444 7


Q ss_pred             hhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHH----HHHHHHHH---HHHHHHhcccccccccccccC
Q psy4246         263 IYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALAT----KLWKLSEE---MIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       263 ~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~r~g~p~dia~~v~F  328 (328)
                      .|+++|+++. +++       +.+.+++|.+.|+...++.....    ...+..+.   ....+++|+++|+|||..++|
T Consensus       163 ~Y~~sK~al~-~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p~gr~g~~~eva~~~~f  241 (270)
T KOG0725|consen  163 AYGVSKAALL-QLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAF  241 (270)
T ss_pred             cchhHHHHHH-HHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccccccCCccCHHHHHHhHHh
Confidence            9999999999 877       45678888888887777651110    00111111   111248999999999999887

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=1.1e-31  Score=241.92  Aligned_cols=205  Identities=11%  Similarity=0.115  Sum_probs=158.1

Q ss_pred             CCCCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|+||++|||||++  |||+++|++|+++|++|++++|+....+. .+++.... + ...++++|++|.++++++++++.
T Consensus         4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~-~~~~~~~~-g-~~~~~~~Dv~d~~~v~~~~~~~~   80 (271)
T PRK06505          4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR-VKPLAESL-G-SDFVLPCDVEDIASVDAVFEALE   80 (271)
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH-HHHHHHhc-C-CceEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999996  99999999999999999999998543322 34443332 2 23578999999999999999999


Q ss_pred             HhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccc------cceecccccchhhh
Q psy4246         198 KKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK------LFARQQGAATSIYC  265 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss------~~~~~~~~~~~~y~  265 (328)
                      +++|+||+||||||+.      .++.+++.++|++++++|+.++++++++++|+|.+.++      +.+..+.++...|+
T Consensus        81 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~~~~~~~Y~  160 (271)
T PRK06505         81 KKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRVMPNYNVMG  160 (271)
T ss_pred             HHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccccCCccchhh
Confidence            9999999999999985      24568899999999999999999999999999986543      34455667788999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHH-HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALA-TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|+|+. +++.       .+.++++.+.|+...++.... .......+...+ .+++|+++|+|||.+++|
T Consensus       161 asKaAl~-~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peeva~~~~f  231 (271)
T PRK06505        161 VAKAALE-ASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPLRRTVTIDEVGGSALY  231 (271)
T ss_pred             hhHHHHH-HHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCCccccCCHHHHHHHHHH
Confidence            9999999 7773       355677888888776653210 000001111111 247999999999999876

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=4.3e-31  Score=236.33  Aligned_cols=207  Identities=13%  Similarity=0.133  Sum_probs=157.9

Q ss_pred             CCCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       118 ~~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .++|+||++|||||+  +|||+++|++|+++|++|++++|+.+.. +..+++....  ..+.++.||++|.+++++++++
T Consensus         5 ~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~-~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~   81 (258)
T PRK07533          5 LLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKAR-PYVEPLAEEL--DAPIFLPLDVREPGQLEAVFAR   81 (258)
T ss_pred             ccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhH-HHHHHHHHhh--ccceEEecCcCCHHHHHHHHHH
Confidence            356899999999998  5999999999999999999999986432 2233333332  2356789999999999999999


Q ss_pred             HHHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcccc------ceecccccchh
Q psy4246         196 YQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL------FARQQGAATSI  263 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~------~~~~~~~~~~~  263 (328)
                      +.+++|+||+||||||+.      +++.+.+.++|+++|++|+.|++++++.++|+|++.+++      .+..+.+....
T Consensus        82 ~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~~~~~~~  161 (258)
T PRK07533         82 IAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKVVENYNL  161 (258)
T ss_pred             HHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccCCccchh
Confidence            999999999999999974      345678999999999999999999999999999765443      34455567889


Q ss_pred             hhccCccccCCCCc-------cccccCccCCCCcccCCHHHH-HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALA-TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++|+|+. +++.       .+..+++.+.|+...++.... ....+..++..+ .+++|+++|+|||.+++|
T Consensus       162 Y~asKaal~-~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~  234 (258)
T PRK07533        162 MGPVKAALE-SSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAPLRRLVDIDDVGAVAAF  234 (258)
T ss_pred             hHHHHHHHH-HHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence            999999998 7663       345667777787776653211 000111112212 247899999999998876

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=5.4e-31  Score=235.96  Aligned_cols=205  Identities=13%  Similarity=0.164  Sum_probs=159.0

Q ss_pred             CCCCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|+||++|||||++  |||+++|+.|+++|++|++++|+. ..++..+++.... +. ..+++||++|+++++++++++.
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~-g~-~~~~~~Dv~~~~~v~~~~~~~~   81 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEI-GC-NFVSELDVTNPKSISNLFDDIK   81 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhc-CC-ceEEEccCCCHHHHHHHHHHHH
Confidence            57899999999997  999999999999999999999874 3444455554432 22 3467999999999999999999


Q ss_pred             HhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcccc------ceecccccchhhh
Q psy4246         198 KKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL------FARQQGAATSIYC  265 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~------~~~~~~~~~~~y~  265 (328)
                      +++|++|+||||||+.      .++.+.+.++|++++++|+.+++++++.++|+|.+.+++      .+..+.++...|+
T Consensus        82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~~~~Y~  161 (260)
T PRK06603         82 EKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVIPNYNVMG  161 (260)
T ss_pred             HHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccCCCcccchh
Confidence            9999999999999974      345688999999999999999999999999999766443      4455567788999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHH-HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALA-TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|+|+. +++.       .+..+++.+.|+...++.... ....+..+.... .+++|+++|+|||++++|
T Consensus       162 asKaal~-~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~  232 (260)
T PRK06603        162 VAKAALE-ASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPLKRNTTQEDVGGAAVY  232 (260)
T ss_pred             hHHHHHH-HHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence            9999999 7763       345677778888776653210 000111112221 248999999999999886

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.97  E-value=4.2e-31  Score=235.43  Aligned_cols=205  Identities=20%  Similarity=0.296  Sum_probs=161.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+..  ++...++...  +.++.++.+|++++++++++++++.+
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (251)
T PRK12481          4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVE   79 (251)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999988643  2333334332  56788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .+|++|+||||||+.  .++.+.+.++|++++++|+.++++++++++|+|.+.         +|+.+..+.++...|+++
T Consensus        80 ~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~as  159 (251)
T PRK12481         80 VMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTAS  159 (251)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCCCcchHHH
Confidence            999999999999985  446678999999999999999999999999999753         344555566778899999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHH-HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+++. +++.       .+..+++.+.|++..++...... .....+..... +++|+++|+|||.+++|
T Consensus       160 K~a~~-~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~peeva~~~~~  228 (251)
T PRK12481        160 KSAVM-GLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPDDLAGPAIF  228 (251)
T ss_pred             HHHHH-HHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99998 7663       35567788888877766321100 01111122222 37899999999999876

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.97  E-value=3.4e-31  Score=236.99  Aligned_cols=207  Identities=13%  Similarity=0.128  Sum_probs=160.8

Q ss_pred             CCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChh--HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLD--KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       119 ~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      ++|+||+++||||+  +|||+++|++|+++|++|++++|+.+  +.++..+++...  ..++.++.+|++|+++++++++
T Consensus         2 ~~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~   79 (258)
T PRK07370          2 LDLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP--LNPSLFLPCDVQDDAQIEETFE   79 (258)
T ss_pred             cccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc--cCcceEeecCcCCHHHHHHHHH
Confidence            35789999999986  89999999999999999999876543  334455555443  2357789999999999999999


Q ss_pred             HHHHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcc------ccceecccccch
Q psy4246         195 EYQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA------KLFARQQGAATS  262 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~s------s~~~~~~~~~~~  262 (328)
                      ++.+++|++|+||||||+.      .++.+.+.++|+++|++|+.|+++++++++|+|.+.+      |+.+..+.++..
T Consensus        80 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~  159 (258)
T PRK07370         80 TIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRAIPNYN  159 (258)
T ss_pred             HHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccCCcccc
Confidence            9999999999999999975      3567889999999999999999999999999998763      444555667888


Q ss_pred             hhhccCccccCCCCc-------cccccCccCCCCcccCCHHHH-HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         263 IYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALA-TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       263 ~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      .|+++|+|+. +++.       .+..+++.+.|+...++.... ....+..+.... .+++|+++|+|||.+++|
T Consensus       160 ~Y~asKaal~-~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~f  233 (258)
T PRK07370        160 VMGVAKAALE-ASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAPLRRTVTQTEVGNTAAF  233 (258)
T ss_pred             hhhHHHHHHH-HHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhcCCcCcCCCHHHHHHHHHH
Confidence            9999999998 7663       345667778888776653210 000111112222 247899999999999876

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1e-30  Score=233.86  Aligned_cols=207  Identities=20%  Similarity=0.213  Sum_probs=167.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++.....+.++.++.||++|+++++++++++.+
T Consensus         3 ~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   82 (260)
T PRK07063          3 NRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE   82 (260)
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999988888877776533356788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||+.  .+..+.+.++|++++++|+.++++++++++|+|.++        ||..+..+.++...|+++|
T Consensus        83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  162 (260)
T PRK07063         83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAK  162 (260)
T ss_pred             HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCCCchHHHHHH
Confidence            999999999999974  445678899999999999999999999999999765        5555566677888999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH-------HHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK-------LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++. +++.       .+..+++.+.|+...++..  ...+.       ..+...+ .+++|+++|+|||.+++|
T Consensus       163 aa~~-~~~~~la~el~~~gIrvn~v~PG~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~va~~~~f  234 (260)
T PRK07063        163 HGLL-GLTRALGIEYAARNVRVNAIAPGYIETQLT--EDWWNAQPDPAAARAETLALQPMKRIGRPEEVAMTAVF  234 (260)
T ss_pred             HHHH-HHHHHHHHHhCccCeEEEEEeeCCccChhh--hhhhhccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            9998 7663       2345677777777665532  21111       1111112 237999999999999876

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=5.4e-31  Score=236.09  Aligned_cols=205  Identities=13%  Similarity=0.095  Sum_probs=157.7

Q ss_pred             CCCCceEEEcCC--CCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGa--s~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|+||++|||||  ++|||+++|++|+++|++|++++|+. +..+..+++....  .....++||++|+++++++++++.
T Consensus         3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   79 (261)
T PRK08690          3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAEL--DSELVFRCDVASDDEINQVFADLG   79 (261)
T ss_pred             ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhcc--CCceEEECCCCCHHHHHHHHHHHH
Confidence            478999999997  67999999999999999999998863 3444455554432  234678999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC-------CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchh
Q psy4246         198 KKFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSI  263 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~-------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~  263 (328)
                      +++|+||+||||||+...       ..+.+.++|+.++++|+.++++++++++|+|+++       +|+.+..+.++...
T Consensus        80 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~~~~~~  159 (261)
T PRK08690         80 KHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNV  159 (261)
T ss_pred             HHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCCCCccc
Confidence            999999999999998532       2457788999999999999999999999999754       44455566678899


Q ss_pred             hhccCccccCCCCc-------cccccCccCCCCcccCCHHHHH-HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT-KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++|+|+. +++.       .+..+++.+.|++..++..... ...+..+.+.+ .+++|+++|+|||.+++|
T Consensus       160 Y~asKaal~-~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~  232 (261)
T PRK08690        160 MGMAKASLE-AGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLRRNVTIEEVGNTAAF  232 (261)
T ss_pred             chhHHHHHH-HHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Confidence            999999998 7663       3456777788887766532110 01111122222 248999999999999876

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=6e-31  Score=235.82  Aligned_cols=204  Identities=14%  Similarity=0.152  Sum_probs=157.6

Q ss_pred             CCCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |+||++|||||++  |||+++|+.|+++|++|++++|+ +++++..+++....  ..+.++.||++|+++++++++++.+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   80 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGK   80 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHh
Confidence            7899999999986  99999999999999999999987 34445556665442  3467889999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-------CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccc------cceecccccchhhh
Q psy4246         199 KFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK------LFARQQGAATSIYC  265 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~-------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss------~~~~~~~~~~~~y~  265 (328)
                      .+|++|+||||||+...       +.+.+.++|++++++|+.|++++++.+.|+|.++++      +.+..+.++...|+
T Consensus        81 ~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~~~~~~Y~  160 (262)
T PRK07984         81 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMG  160 (262)
T ss_pred             hcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCCcchhH
Confidence            99999999999997521       346788999999999999999999999998765543      34445567788999


Q ss_pred             ccCccccCCCC-------ccccccCccCCCCcccCCHHHH-HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALA-TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|+|+. +++       +.+.++++.+.|++..++.... ....+..+.... .+++|+++|+|||++++|
T Consensus       161 asKaal~-~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~  231 (262)
T PRK07984        161 LAKASLE-ANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAF  231 (262)
T ss_pred             HHHHHHH-HHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCCCcCCCCHHHHHHHHHH
Confidence            9999999 777       3345677778888776642110 011111112211 247999999999999876

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=8.5e-31  Score=234.29  Aligned_cols=209  Identities=10%  Similarity=0.085  Sum_probs=159.5

Q ss_pred             CCCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       118 ~~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +++++||++|||||+  +|||+++|++|+++|++|++++|+... .+..+++.....+.++.++++|++|++++++++++
T Consensus         2 ~~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~   80 (257)
T PRK08594          2 MLSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL-EKEVRELADTLEGQESLLLPCDVTSDEEITACFET   80 (257)
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc-hHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHH
Confidence            357899999999997  899999999999999999999876321 12222333322245788999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchh
Q psy4246         196 YQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSI  263 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~  263 (328)
                      +.+++|+||+||||||+.      .++.+.+.++|.+++++|+.+++++++.++|+|.+.      +|+.+..+.++...
T Consensus        81 ~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~  160 (257)
T PRK08594         81 IKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVVQNYNV  160 (257)
T ss_pred             HHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCCCCCch
Confidence            999999999999999974      345678899999999999999999999999999765      44455566677889


Q ss_pred             hhccCccccCCCCc-------cccccCccCCCCcccCCHHHH-HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALA-TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++|+|+. +++.       .+..+++.+.|+...++.... ....+..+.... .+++|+++|+|+|.+++|
T Consensus       161 Y~asKaal~-~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~  233 (257)
T PRK08594        161 MGVAKASLE-ASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAPLRRTTTQEEVGDTAAF  233 (257)
T ss_pred             hHHHHHHHH-HHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhcCCccccCCHHHHHHHHHH
Confidence            999999999 7773       344667777787776653210 001111111211 147899999999998876

>KOG1201|consensus

Probab=99.97  E-value=1.7e-30  Score=227.77  Aligned_cols=155  Identities=21%  Similarity=0.331  Sum_probs=145.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++|++||||||++|||+++|.+||++|+++++.|.+.+...+.++++...  | ++..+.||+++.+++.++.++++
T Consensus        33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~--g-~~~~y~cdis~~eei~~~a~~Vk  109 (300)
T KOG1201|consen   33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI--G-EAKAYTCDISDREEIYRLAKKVK  109 (300)
T ss_pred             hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc--C-ceeEEEecCCCHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999888765  3 89999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.+|.+|+||||||+.  .++.++++++++++|++|+.|+|..+|+++|.|.+.        +|++|..+.++...||+|
T Consensus       110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl~~YcaS  189 (300)
T KOG1201|consen  110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAGLADYCAS  189 (300)
T ss_pred             HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCccchhhhhh
Confidence            9999999999999995  567899999999999999999999999999999986        888999999999999999


Q ss_pred             CccccCCCC
Q psy4246         268 SLDLSLPVS  276 (328)
Q Consensus       268 k~al~~~~~  276 (328)
                      |+|+. ++.
T Consensus       190 K~a~v-Gfh  197 (300)
T KOG1201|consen  190 KFAAV-GFH  197 (300)
T ss_pred             HHHHH-HHH
Confidence            99988 655

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.5e-30  Score=233.52  Aligned_cols=210  Identities=18%  Similarity=0.181  Sum_probs=169.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..+|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++....++.++.++.+|++|.++++++++++.
T Consensus         3 ~~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (265)
T PRK07062          3 QIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE   82 (265)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999998888888887766555688999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.++++|+||||||+.  .++.+.+.++|++.+++|+.+++++++.++|+|++.        +|+.+..+.++...|+++
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~as  162 (265)
T PRK07062         83 ARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEPHMVATSAA  162 (265)
T ss_pred             HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCCCchHhHHH
Confidence            9999999999999984  456788899999999999999999999999999864        555566666788999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHH--------HHH-HHHHHH---HHHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK--------LWK-LSEEMI---QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~---~~~~~r~g~p~dia~~v~F  328 (328)
                      |+++. +++.       .+..+++.+.|+...++......        .++ ..++..   ..+++|+++|+|||++++|
T Consensus       163 Kaal~-~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~  241 (265)
T PRK07062        163 RAGLL-NLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIPLGRLGRPDEAARALFF  241 (265)
T ss_pred             HHHHH-HHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCCcCCCCCHHHHHHHHHH
Confidence            99998 6663       23456677777776665321100        011 111111   1237899999999998875

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=1.9e-30  Score=231.86  Aligned_cols=205  Identities=16%  Similarity=0.117  Sum_probs=155.6

Q ss_pred             CCCCCCceEEEcCC--CCCccHHHHHHHHHCCCeEEEeeCCh--hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSL--DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFA  193 (328)
Q Consensus       118 ~~~l~~k~~lITGa--s~GIG~a~a~~la~~Ga~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  193 (328)
                      +.+|++|+++||||  ++|||+++|+.|+++|++|++++|+.  +.+++..+++     +.++.++.+|++|++++++++
T Consensus         2 ~~~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~   76 (256)
T PRK07889          2 MGLLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL-----PEPAPVLELDVTNEEHLASLA   76 (256)
T ss_pred             cccccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc-----CCCCcEEeCCCCCHHHHHHHH
Confidence            34689999999999  89999999999999999999999864  2233333322     236778999999999999999


Q ss_pred             HHHHHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccccce-----ecccccch
Q psy4246         194 EEYQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA-----RQQGAATS  262 (328)
Q Consensus       194 ~~~~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~~~-----~~~~~~~~  262 (328)
                      +++.+.+|++|+||||||+.      .++.+.+.++|++++++|+.+++++++.++|+|++.+++..     ..+.+.+.
T Consensus        77 ~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~~~~~~~  156 (256)
T PRK07889         77 DRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATVAWPAYD  156 (256)
T ss_pred             HHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccccCCccc
Confidence            99999999999999999985      24567788999999999999999999999999987666532     22335667


Q ss_pred             hhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHh-cccccccccccccC
Q psy4246         263 IYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVS-TWLEETTERGEVVF  328 (328)
Q Consensus       263 ~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~-r~g~p~dia~~v~F  328 (328)
                      .|+++|+++. +++.       .+..+++.+.|+...++...... ..+..+.+.+ .+++ |+++|+|||.+++|
T Consensus       157 ~Y~asKaal~-~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~evA~~v~~  231 (256)
T PRK07889        157 WMGVAKAALE-STNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPLGWDVKDPTPVARAVVA  231 (256)
T ss_pred             hhHHHHHHHH-HHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCccccccCCHHHHHHHHHH
Confidence            7899999999 7763       34466777778877665321100 0111111211 2366 69999999999876

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.97  E-value=2.4e-30  Score=230.67  Aligned_cols=205  Identities=18%  Similarity=0.218  Sum_probs=163.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++++||++|||||++|||.++|+.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.+
T Consensus         5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (253)
T PRK05867          5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS--GGKVVPVCCDVSQHQQVTSMLDQVTA   82 (253)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999998888877777654  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceeccc-c-cchhhh
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQG-A-ATSIYC  265 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~-~-~~~~y~  265 (328)
                      .+|++|+||||||+.  .++.+.+.++|++++++|+.++++++++++|+|.++         +|+.+.... + ....|+
T Consensus        83 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~Y~  162 (253)
T PRK05867         83 ELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYC  162 (253)
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCCCCCccchH
Confidence            999999999999985  456678899999999999999999999999999764         232332222 2 347899


Q ss_pred             ccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ +++..       +..+++.+.|++..++...  ...+..+.... .+++|+++|+|||.+++|
T Consensus       163 asKaal~-~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~--~~~~~~~~~~~~~~~~r~~~p~~va~~~~~  230 (253)
T PRK05867        163 ASKAAVI-HLTKAMAVELAPHKIRVNSVSPGYILTELVE--PYTEYQPLWEPKIPLGRLGRPEELAGLYLY  230 (253)
T ss_pred             HHHHHHH-HHHHHHHHHHhHhCeEEEEeecCCCCCcccc--cchHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999999 77633       3456777778777665321  11111112221 247999999999999876

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=2.2e-30  Score=233.44  Aligned_cols=205  Identities=11%  Similarity=0.116  Sum_probs=156.5

Q ss_pred             CCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|++|++|||||+  +|||+++|+.|+++|++|++++|+.. ..+..+++.... + .+..+++|++|+++++++++++.
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~~-~-~~~~~~~Dl~~~~~v~~~~~~~~   83 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAEL-G-AFVAGHCDVTDEASIDAVFETLE   83 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHhc-C-CceEEecCCCCHHHHHHHHHHHH
Confidence            4789999999997  89999999999999999999988732 233344444332 2 35678999999999999999999


Q ss_pred             HhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccc------cceecccccchhhh
Q psy4246         198 KKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK------LFARQQGAATSIYC  265 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss------~~~~~~~~~~~~y~  265 (328)
                      +++|+||+||||||+.      .++.+.+.++|+++|++|+.|+++++++++|+|.+.++      +.+..+.++...|+
T Consensus        84 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~p~~~~Y~  163 (272)
T PRK08159         84 KKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVMPHYNVMG  163 (272)
T ss_pred             HhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCCCcchhhh
Confidence            9999999999999985      34567899999999999999999999999999976533      34455567788999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHH--HHHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMI--QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~g~p~dia~~v~F  328 (328)
                      ++|+|+. +++.       .+..+++.+.|++..++......-.+...+..  ..+++|+++|||||.+++|
T Consensus       164 asKaal~-~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~~~~  234 (272)
T PRK08159        164 VAKAALE-ASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIEEVGDSALY  234 (272)
T ss_pred             hHHHHHH-HHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCCcccccCCHHHHHHHHHH
Confidence            9999998 7662       34566777778877664321000000111111  2357899999999999876

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.97  E-value=2.1e-30  Score=235.72  Aligned_cols=209  Identities=15%  Similarity=0.150  Sum_probs=159.1

Q ss_pred             CCCCCCceEEEcCC--CCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhh-------CCCC----eEEEEEccc-
Q psy4246         118 GRDLSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-------KPSA----QCIAMELNL-  183 (328)
Q Consensus       118 ~~~l~~k~~lITGa--s~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~-------~~~~----~~~~~~~Dl-  183 (328)
                      .++|+||++|||||  ++|||+++|+.|+++|++|++ +|+.+.+++...++...       .+..    ....+.+|+ 
T Consensus         4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   82 (303)
T PLN02730          4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV   82 (303)
T ss_pred             CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence            45799999999999  899999999999999999999 78878777776666431       0111    146788999 


Q ss_pred             -CC------------------HHHHHHHHHHHHHhcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHH
Q psy4246         184 -CR------------------LKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTL  240 (328)
Q Consensus       184 -s~------------------~~~v~~~~~~~~~~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~  240 (328)
                       ++                  .++++++++++.+.+|+||+||||||+.    .++.+.+.++|+++|++|+.++++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~  162 (303)
T PLN02730         83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQ  162 (303)
T ss_pred             cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence             43                  3489999999999999999999999752    567889999999999999999999999


Q ss_pred             HHHHHHHhcccc------ceecccccc-hhhhccCccccCCCC-------cc-ccccCccCCCCcccCCHHHHHH-HHHH
Q psy4246         241 QLENALIKGAKL------FARQQGAAT-SIYCATSLDLSLPVS-------GS-YFNNCCRCPPSKAAQDEALATK-LWKL  304 (328)
Q Consensus       241 ~~~~~~~~~ss~------~~~~~~~~~-~~y~ask~al~~~~~-------g~-~~~~~~~~~~~~~~~~~~~~~~-~~~~  304 (328)
                      +++|+|++++++      .+..+.++. ..|+++|+++. +++       +. +..+++.+.|++..++...... ..+.
T Consensus       163 ~~~p~m~~~G~II~isS~a~~~~~p~~~~~Y~asKaAl~-~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~~~~~~~~~  241 (303)
T PLN02730        163 HFGPIMNPGGASISLTYIASERIIPGYGGGMSSAKAALE-SDTRVLAFEAGRKYKIRVNTISAGPLGSRAAKAIGFIDDM  241 (303)
T ss_pred             HHHHHHhcCCEEEEEechhhcCCCCCCchhhHHHHHHHH-HHHHHHHHHhCcCCCeEEEEEeeCCccCchhhcccccHHH
Confidence            999999876444      444455544 47999999998 766       22 4567788888877776432100 0011


Q ss_pred             HHHHHHH-HHhcccccccccccccC
Q psy4246         305 SEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       305 ~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      .+..... +++|+++|+|||.+++|
T Consensus       242 ~~~~~~~~pl~r~~~peevA~~~~f  266 (303)
T PLN02730        242 IEYSYANAPLQKELTADEVGNAAAF  266 (303)
T ss_pred             HHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            1111122 46899999999999876

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.96  E-value=5.2e-30  Score=234.54  Aligned_cols=207  Identities=15%  Similarity=0.139  Sum_probs=158.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh----------hHHHHHHHHHHhhCCCCeEEEEEcccCCHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL----------DKANDAISKILTEKPSAQCIAMELNLCRLKS  188 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~----------~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~  188 (328)
                      .+|+||++|||||++|||+++|+.|+++|++|++++|+.          +.++++.+++...  +.++.++.||++|+++
T Consensus         4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~   81 (305)
T PRK08303          4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA--GGRGIAVQVDHLVPEQ   81 (305)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence            568999999999999999999999999999999999973          3455555555443  4578889999999999


Q ss_pred             HHHHHHHHHHhcCCccEEEEcc-ccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--cccc------
Q psy4246         189 VKKFAEEYQKKFRSLNILVLNA-GVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLF------  253 (328)
Q Consensus       189 v~~~~~~~~~~~g~id~lvnnA-g~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--ss~~------  253 (328)
                      ++++++++.+.+|+||+||||| |+.      .++.+.+.++|++++++|+.++|+++++++|+|.++  ++|.      
T Consensus        82 v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~  161 (305)
T PRK08303         82 VRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGT  161 (305)
T ss_pred             HHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcc
Confidence            9999999999999999999999 852      445678889999999999999999999999999764  3442      


Q ss_pred             eec---ccccchhhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHHH-HH--HHHHHHHHHH-Hhccccc
Q psy4246         254 ARQ---QGAATSIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATK-LW--KLSEEMIQSV-VSTWLEE  319 (328)
Q Consensus       254 ~~~---~~~~~~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~-~~r~g~p  319 (328)
                      +..   +.++...|+++|+++. +++       +.+.++++.+.|+...++...... ..  ...+.....+ ++|+++|
T Consensus       162 ~~~~~~~~~~~~~Y~asKaal~-~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p  240 (305)
T PRK08303        162 AEYNATHYRLSVFYDLAKTSVN-RLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEENWRDALAKEPHFAISETP  240 (305)
T ss_pred             ccccCcCCCCcchhHHHHHHHH-HHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccchhhhhccccccccCCCH
Confidence            111   1224678999999999 776       334567777888877665421110 00  0111111224 5788999


Q ss_pred             ccccccccC
Q psy4246         320 TTERGEVVF  328 (328)
Q Consensus       320 ~dia~~v~F  328 (328)
                      +|||.+++|
T Consensus       241 eevA~~v~f  249 (305)
T PRK08303        241 RYVGRAVAA  249 (305)
T ss_pred             HHHHHHHHH
Confidence            999999876

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.96  E-value=7.1e-30  Score=227.65  Aligned_cols=207  Identities=17%  Similarity=0.205  Sum_probs=163.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|++|||||++|||+++|+.|+++|++|++++|+.++++++..++...  +.++.++.||++++++++++++++.+
T Consensus         2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (254)
T PRK07478          2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE--GGEAVALAGDVRDEAYAKALVALAVE   79 (254)
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999998888877777654  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee-cccccchhhhc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR-QQGAATSIYCA  266 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~-~~~~~~~~y~a  266 (328)
                      +++++|+||||||+.   .++.+.+.++|++++++|+.+++++++.++|.|++.        +|+.+. .+.++...|++
T Consensus        80 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~  159 (254)
T PRK07478         80 RFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAGFPGMAAYAA  159 (254)
T ss_pred             hcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccCCCCcchhHH
Confidence            999999999999985   355678899999999999999999999999999765        444443 35567889999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHH--HHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS--VVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~g~p~dia~~v~F  328 (328)
                      +|+++. .++..       +..+++.+.|+...++...............+.  +++|+++|+|+|..++|
T Consensus       160 sK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  229 (254)
T PRK07478        160 SKAGLI-GLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHALKRMAQPEEIAQAALF  229 (254)
T ss_pred             HHHHHH-HHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999998 66633       234566667776665522110000011111111  36899999999998875

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.96  E-value=5.9e-30  Score=229.24  Aligned_cols=205  Identities=11%  Similarity=0.060  Sum_probs=153.4

Q ss_pred             CCCCceEEEcCC--CCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGa--s~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|++|++|||||  ++|||+++|++|+++|++|++++|... ..+..+++.... + ....+.||++|+++++++++.+.
T Consensus         3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~Dv~d~~~v~~~~~~~~   79 (260)
T PRK06997          3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEF-G-SDLVFPCDVASDEQIDALFASLG   79 (260)
T ss_pred             ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHhc-C-CcceeeccCCCHHHHHHHHHHHH
Confidence            478999999997  689999999999999999999876522 222233343332 2 23468999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC-------CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhh
Q psy4246         198 KKFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIY  264 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~-------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y  264 (328)
                      +++|+||+||||||+...       ..+.+.++|+++|++|+.|+++++++++|+|.+.      +|+.+..+.++...|
T Consensus        80 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~~~~~~Y  159 (260)
T PRK06997         80 QHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVVPNYNTM  159 (260)
T ss_pred             HHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCCCCcchH
Confidence            999999999999998532       2357889999999999999999999999999655      444555566778899


Q ss_pred             hccCccccCCCCc-------cccccCccCCCCcccCCHHHH-HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALA-TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|+|+. +++.       .+..+++.+.|+...++.... ....+..+.+.. .+++|+++|+|||.+++|
T Consensus       160 ~asKaal~-~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~  231 (260)
T PRK06997        160 GLAKASLE-ASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNAPLRRNVTIEEVGNVAAF  231 (260)
T ss_pred             HHHHHHHH-HHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcCcccccCCHHHHHHHHHH
Confidence            99999999 7663       345667777777766642210 000111112222 247999999999999876

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.96  E-value=7.2e-30  Score=227.73  Aligned_cols=207  Identities=18%  Similarity=0.183  Sum_probs=160.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh-HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD-KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+ .+++..+++...  +.++.++.+|++|+++++++++++.
T Consensus         4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~~   81 (254)
T PRK06114          4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA--GRRAIQIAADVTSKADLRAAVARTE   81 (254)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999754 345566666543  4578889999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccc--cchhhh
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGA--ATSIYC  265 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~--~~~~y~  265 (328)
                      +.+++||+||||||+.  .+..+.+.++|++++++|+.|+++++++++|.|.++        +|+.+..+.+  ....|+
T Consensus        82 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~  161 (254)
T PRK06114         82 AELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRGLLQAHYN  161 (254)
T ss_pred             HHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCCcchHH
Confidence            9999999999999985  445678899999999999999999999999999764        3444433333  367899


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|+++. +++.       .+..+++.+.|++..++........+..+.... .+++|+++|+|||++++|
T Consensus       162 ~sKaa~~-~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~  231 (254)
T PRK06114        162 ASKAGVI-HLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEEQTPMQRMAKVDEMVGPAVF  231 (254)
T ss_pred             HHHHHHH-HHHHHHHHHHhhcCeEEEEEeecCccCcccccccchHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999998 6663       234566767777665543211111111122222 248999999999998876

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.96  E-value=1.1e-29  Score=227.51  Aligned_cols=208  Identities=11%  Similarity=0.107  Sum_probs=162.5

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ++.+|++|++|||||++|||+++|+.|+++|++|++++| +.+.++....++.... +.++.++.+|++|++++++++++
T Consensus         2 ~~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~   80 (260)
T PRK08416          2 MSNEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-GIKAKAYPLNILEPETYKELFKK   80 (260)
T ss_pred             cccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHH
Confidence            345789999999999999999999999999999998875 5566666666665432 55889999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccc
Q psy4246         196 YQKKFRSLNILVLNAGVF--------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGA  259 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~  259 (328)
                      +.+.++++|+||||||+.        .++.+.+.++|.+++++|+.+++.+++.++|.|.+.        +|+.+..+.+
T Consensus        81 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~  160 (260)
T PRK08416         81 IDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYIE  160 (260)
T ss_pred             HHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCCC
Confidence            999999999999999864        234577889999999999999999999999999764        4555556667


Q ss_pred             cchhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHH---HHHHHHHH-HHHhcccccccccccccC
Q psy4246         260 ATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW---KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       260 ~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +...|+++|++++ .++..       +..+++.+.|++..++..  ....   +..+.... .+++|+++|+|+|.+++|
T Consensus       161 ~~~~Y~asK~a~~-~~~~~la~el~~~gi~v~~v~PG~i~T~~~--~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~  237 (260)
T PRK08416        161 NYAGHGTSKAAVE-TMVKYAATELGEKNIRVNAVSGGPIDTDAL--KAFTNYEEVKAKTEELSPLNRMGQPEDLAGACLF  237 (260)
T ss_pred             CcccchhhHHHHH-HHHHHHHHHhhhhCeEEEEEeeCcccChhh--hhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            8889999999998 66632       345666677776666532  1111   11111111 237899999999998875

>KOG1208|consensus

Probab=99.96  E-value=1.2e-28  Score=223.81  Aligned_cols=197  Identities=48%  Similarity=0.742  Sum_probs=175.1

Q ss_pred             hhccCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHH
Q psy4246         114 QILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFA  193 (328)
Q Consensus       114 ~~~~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  193 (328)
                      ......++.+++++||||++|||+++|+.|+.+|++|++.+|+.+..+++++++....+..++.+++||+++.++|+++.
T Consensus        26 ~~~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa  105 (314)
T KOG1208|consen   26 EVTHGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFA  105 (314)
T ss_pred             eeeccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHH
Confidence            34456688999999999999999999999999999999999999999999999988766789999999999999999999


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccc------------
Q psy4246         194 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLF------------  253 (328)
Q Consensus       194 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~------------  253 (328)
                      +++.+.++++|+||||||++.+....+.|.++.+|.+|++|+|+|++.++|.|+.+        ||+.            
T Consensus       106 ~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~~  185 (314)
T KOG1208|consen  106 EEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSG  185 (314)
T ss_pred             HHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccccCccchhhccc
Confidence            99999999999999999999877788999999999999999999999999999965        2210            


Q ss_pred             ---------------------------------------------------------------------eecccccchhh
Q psy4246         254 ---------------------------------------------------------------------ARQQGAATSIY  264 (328)
Q Consensus       254 ---------------------------------------------------------------------~~~~~~~~~~y  264 (328)
                                                                                           +...++....|
T Consensus       186 ~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r~~~~~~~l~~~l~~~~~ks~~~ga~t~~~  265 (314)
T KOG1208|consen  186 EKAKLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSRVNLLLRLLAKKLSWPLTKSPEQGAATTCY  265 (314)
T ss_pred             hhccCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccceecchHHHHHHHHHHHHHhccCHHHHhhheeh
Confidence                                                                                 01244566778


Q ss_pred             hccCccccCCCCccccccCccCCCCcccCCHHHHHHHHHHHHHHHHH
Q psy4246         265 CATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS  311 (328)
Q Consensus       265 ~ask~al~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (328)
                      ++.+..++ +.+|.|+.+|....+...+.+...++++|+..+++...
T Consensus       266 ~a~~p~~~-~~sg~y~~d~~~~~~~~~a~d~~~~~~lw~~s~~l~~~  311 (314)
T KOG1208|consen  266 AALSPELE-GVSGKYFEDCAIAEPSEEALDEELAEKLWKFSEELIDE  311 (314)
T ss_pred             hccCcccc-CccccccccccccccccccCCHHHHHHHHHHHHHHhhh
Confidence            88888888 89999999999999989999999999999999887653

>PRK08589 short chain dehydrogenase; Validated

Probab=99.96  E-value=4.1e-29  Score=225.21  Aligned_cols=203  Identities=23%  Similarity=0.248  Sum_probs=162.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|++|++|||||++|||+++|+.|+++|++|++++|+ +.+++...++...  +.++.++.||+++.++++++++++.+.
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN--GGKAKAYHVDISDEQQVKDFASEIKEQ   79 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999 7777777777543  457899999999999999999999999


Q ss_pred             cCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|++|+||||||+.   .+..+.+.+.|++++++|+.|+++++++++|+|++.       +|..+..+.+....|+++|+
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  159 (272)
T PRK08589         80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAADLYRSGYNAAKG  159 (272)
T ss_pred             cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCCCCCCchHHHHHH
Confidence            99999999999985   345678889999999999999999999999999764       44455566667889999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH-----HHHHHH-----HHHHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK-----LSEEMI-----QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..       +..+++.+.|+...++...  ....     ..+...     ..+++|+++|+|+|.+++|
T Consensus       160 al~-~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  232 (272)
T PRK08589        160 AVI-NFTKSIAIEYGRDGIRANAIAPGTIETPLVD--KLTGTSEDEAGKTFRENQKWMTPLGRLGKPEEVAKLVVF  232 (272)
T ss_pred             HHH-HHHHHHHHHhhhcCeEEEEEecCcccCchhh--hhcccchhhHHHHHhhhhhccCCCCCCcCHHHHHHHHHH
Confidence            998 66633       3456666777776655321  1110     001111     1247899999999998875

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.96  E-value=2.9e-29  Score=227.87  Aligned_cols=200  Identities=19%  Similarity=0.249  Sum_probs=158.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh---------hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL---------DKANDAISKILTEKPSAQCIAMELNLCRLKSVK  190 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~---------~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  190 (328)
                      .++||++|||||++|||+++|++|+++|++|++++++.         +.+++..+++...  +.++.++.+|++|+++++
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~   80 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA--GGEAVANGDDIADWDGAA   80 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc--CCceEEEeCCCCCHHHHH
Confidence            47899999999999999999999999999999998875         6666667777554  557889999999999999


Q ss_pred             HHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cccce
Q psy4246         191 KFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------------AKLFA  254 (328)
Q Consensus       191 ~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss~~~  254 (328)
                      ++++++.+.+|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.              ||+.+
T Consensus        81 ~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~  160 (286)
T PRK07791         81 NLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG  160 (286)
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence            99999999999999999999985  456788999999999999999999999999999742              44455


Q ss_pred             ecccccchhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHh--cccccccccc
Q psy4246         255 RQQGAATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVS--TWLEETTERG  324 (328)
Q Consensus       255 ~~~~~~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--r~g~p~dia~  324 (328)
                      ..+.++...|+++|+++. +++..       +..+++.+.|+ ..++.  ......   ..... ..+  ++.+|+|||.
T Consensus       161 ~~~~~~~~~Y~asKaal~-~l~~~la~el~~~gIrVn~v~Pg-~~T~~--~~~~~~---~~~~~~~~~~~~~~~pedva~  233 (286)
T PRK07791        161 LQGSVGQGNYSAAKAGIA-ALTLVAAAELGRYGVTVNAIAPA-ARTRM--TETVFA---EMMAKPEEGEFDAMAPENVSP  233 (286)
T ss_pred             CcCCCCchhhHHHHHHHH-HHHHHHHHHHHHhCeEEEEECCC-CCCCc--chhhHH---HHHhcCcccccCCCCHHHHHH
Confidence            667778899999999998 77633       44567777776 33332  111111   11111 123  5689999999


Q ss_pred             cccC
Q psy4246         325 EVVF  328 (328)
Q Consensus       325 ~v~F  328 (328)
                      +++|
T Consensus       234 ~~~~  237 (286)
T PRK07791        234 LVVW  237 (286)
T ss_pred             HHHH
Confidence            8876

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.96  E-value=3.7e-29  Score=224.20  Aligned_cols=202  Identities=16%  Similarity=0.218  Sum_probs=155.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|+++||||++|||+++|++|+++|++|++++|+.+.++++...    . +.++.++.+|+++.++++++++++.+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~----~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (262)
T TIGR03325         2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA----H-GDAVVGVEGDVRSLDDHKEAVARCVAA   76 (262)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh----c-CCceEEEEeccCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999988766554322    1 457888999999999999999999999


Q ss_pred             cCCccEEEEccccC---CCCCCCCh----hHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhh
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTE----DGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYC  265 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~----~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~  265 (328)
                      ++++|+||||||+.   .++.+.+.    ++|++++++|+.++++++++++|+|.+.       +|..+..+.++...|+
T Consensus        77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~  156 (262)
T TIGR03325        77 FGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNGGGPLYT  156 (262)
T ss_pred             hCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCCCCCchhH
Confidence            99999999999974   23334443    4799999999999999999999999754       4445556666778999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHH--------HHHHHHHHH--HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKL--------WKLSEEMIQ--SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ +++.       .+ .+++.+.|+...++.......        ....++..+  .+++|+++|+|||++++|
T Consensus       157 ~sKaa~~-~l~~~la~e~~~~-irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~  234 (262)
T TIGR03325       157 AAKHAVV-GLVKELAFELAPY-VRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSVLPIGRMPDAEEYTGAYVF  234 (262)
T ss_pred             HHHHHHH-HHHHHHHHhhccC-eEEEEEecCCCcCCCccccccccccccccccchhhhhhhcCCCCCCCChHHhhhheee
Confidence            9999999 7662       33 567777777666553210000        000112211  248999999999999987

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.96  E-value=6.6e-29  Score=222.52  Aligned_cols=202  Identities=17%  Similarity=0.189  Sum_probs=160.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++     +.++.++.||++|+++++++++++.+
T Consensus         2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~   76 (261)
T PRK08265          2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVA   76 (261)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999987766665544     45788999999999999999999999


Q ss_pred             hcCCccEEEEccccCC-CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCcc
Q psy4246         199 KFRSLNILVLNAGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      .++++|+||||||+.. ...+.+.++|++++++|+.++++++++++|+|.+.       +|..+..+.++...|+++|++
T Consensus        77 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaa  156 (261)
T PRK08265         77 RFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQTGRWLYPASKAA  156 (261)
T ss_pred             HhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCCchhHHHHHH
Confidence            9999999999999852 23467889999999999999999999999999532       555666677788899999999


Q ss_pred             ccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH----HHHHHHH--HHHhcccccccccccccC
Q psy4246         271 LSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK----LSEEMIQ--SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~r~g~p~dia~~v~F  328 (328)
                      +. .++.       .+..+++.+.|+...++..  ..+..    ..+....  .+++|+++|+|||.+++|
T Consensus       157 ~~-~~~~~la~e~~~~gi~vn~v~PG~~~t~~~--~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~  224 (261)
T PRK08265        157 IR-QLTRSMAMDLAPDGIRVNSVSPGWTWSRVM--DELSGGDRAKADRVAAPFHLLGRVGDPEEVAQVVAF  224 (261)
T ss_pred             HH-HHHHHHHHHhcccCEEEEEEccCCccChhh--hhhcccchhHHHHhhcccCCCCCccCHHHHHHHHHH
Confidence            98 6653       2345667777776655432  11111    1111111  247899999999998876

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.96  E-value=8.3e-29  Score=220.77  Aligned_cols=205  Identities=20%  Similarity=0.256  Sum_probs=165.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+.+.+...++...  +.++..+.+|++|+++++++++.+.+
T Consensus         5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   82 (254)
T PRK08085          5 FSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE--GIKAHAAPFNVTHKQEVEAAIEHIEK   82 (254)
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEecCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999988888777777654  45788899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||..  .++.+.+.++|++++++|+.+++++++.++++|.+.        ||+.+..+.++...|+++|
T Consensus        83 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK  162 (254)
T PRK08085         83 DIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDTITPYAASK  162 (254)
T ss_pred             hcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCCCCcchHHHH
Confidence            999999999999975  456788999999999999999999999999999754        4444556667788999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHH----HHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALA----TKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ ++...       +..+++.+.|+...++....    +...+...  ...+++|+++|+|||++++|
T Consensus       163 ~a~~-~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~va~~~~~  230 (254)
T PRK08085        163 GAVK-MLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLC--KRTPAARWGDPQELIGAAVF  230 (254)
T ss_pred             HHHH-HHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHH--hcCCCCCCcCHHHHHHHHHH
Confidence            9998 76643       34566667777666653221    11111111  11247999999999998765

>PRK07985 oxidoreductase; Provisional

Probab=99.96  E-value=1.4e-28  Score=224.30  Aligned_cols=206  Identities=22%  Similarity=0.200  Sum_probs=160.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh--hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL--DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++++|++|||||++|||+++|+.|+++|++|++++|+.  +..+++.+.+...  +.++.++.+|++|.++++++++++.
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~  123 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEEC--GRKAVLLPGDLSDEKFARSLVHEAH  123 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            58999999999999999999999999999999988753  3344444333332  5578889999999999999999999


Q ss_pred             HhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccC
Q psy4246         198 KKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask  268 (328)
                      +.+|++|+||||||..   .++.+.+.++|++++++|+.|+++++++++|+|.+.      ||+.+..+.++...|+++|
T Consensus       124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~~~~~Y~asK  203 (294)
T PRK07985        124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATK  203 (294)
T ss_pred             HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCCCcchhHHHH
Confidence            9999999999999974   456788999999999999999999999999999765      5555566667788999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++. .++.       .+..+++.+.|+...++....... .+..+.... .+++|+++|+|||.+++|
T Consensus       204 aal~-~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~r~~~pedva~~~~f  271 (294)
T PRK07985        204 AAIL-NYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVY  271 (294)
T ss_pred             HHHH-HHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccCCCCCCCCHHHHHHHHHh
Confidence            9998 6663       235667777777766653211000 011111222 237899999999999876

>PRK06128 oxidoreductase; Provisional

Probab=99.96  E-value=9.6e-29  Score=225.93  Aligned_cols=207  Identities=20%  Similarity=0.175  Sum_probs=160.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh--HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD--KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..|+||++|||||++|||+++|+.|+++|++|++++++.+  ..++..+.+...  +.++.++.||+++.++++++++++
T Consensus        51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~  128 (300)
T PRK06128         51 GRLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--GRKAVALPGDLKDEAFCRQLVERA  128 (300)
T ss_pred             cccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHH
Confidence            3588999999999999999999999999999999887643  334444455443  567889999999999999999999


Q ss_pred             HHhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhcc
Q psy4246         197 QKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~as  267 (328)
                      .+.++++|+||||||+.   .++.+++.++|++++++|+.|+++++++++|+|.+.      ||+.+..+.++...|+++
T Consensus       129 ~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~as  208 (300)
T PRK06128        129 VKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPTLLDYAST  208 (300)
T ss_pred             HHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCCCchhHHHH
Confidence            99999999999999974   346788999999999999999999999999999765      555566666788899999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH-HHHHHHHH-HHHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL-WKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++....... .+..+... ..+++|+++|+|||.+++|
T Consensus       209 K~a~~-~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~  277 (300)
T PRK06128        209 KAAIV-AFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETPMKRPGQPVEMAPLYVL  277 (300)
T ss_pred             HHHHH-HHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            99998 76633       34556666676665543111000 01111121 1247899999999998875

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.96  E-value=1.5e-28  Score=219.17  Aligned_cols=206  Identities=21%  Similarity=0.308  Sum_probs=158.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|+||++|||||++|||.++|++|+++|++|++++++..  .+..+++...  +.++..+++|++|.++++++++++.
T Consensus         5 ~~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   80 (253)
T PRK08993          5 AFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL--GRRFLSLTADLRKIDGIPALLERAV   80 (253)
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999887542  3334444432  4578899999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                      +.++++|+||||||+.  .++.+.+.++|++++++|+.++++++++++|+|.++         ||..+..+.+....|++
T Consensus        81 ~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~  160 (253)
T PRK08993         81 AEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTA  160 (253)
T ss_pred             HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCCCcchHH
Confidence            9999999999999985  446788899999999999999999999999998753         34445556667789999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ +++..       +..+++.+.|+...++...... .....+...+. +++|+++|+|+|.+++|
T Consensus       161 sKaa~~-~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~  230 (253)
T PRK08993        161 SKSGVM-GVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPVVF  230 (253)
T ss_pred             HHHHHH-HHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999998 66632       3345666677777665321100 01111222222 37899999999998876

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.96  E-value=1.4e-28  Score=224.38  Aligned_cols=206  Identities=20%  Similarity=0.203  Sum_probs=163.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+++||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++..   +.++..+.||++|.++++++++++.+
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~   81 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVE   81 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999888777666532   34677788999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~  269 (328)
                      .+++||+||||||+.  .++.+.+.++|++++++|+.|++++++.++|+|.+.       ||+.+..+.++...|+++|+
T Consensus        82 ~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  161 (296)
T PRK05872         82 RFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAPGMAAYCASKA  161 (296)
T ss_pred             HcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCCCchHHHHHHH
Confidence            999999999999985  556788999999999999999999999999998764       55566677788899999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHHH-HHHHHHHHHHH---HHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQS---VVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..       +..+++.+.|+...++...... .....+++...   +++|+.+|+|+|.+++|
T Consensus       162 al~-~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~i~~  230 (296)
T PRK05872        162 GVE-AFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWPLRRTTSVEKCAAAFVD  230 (296)
T ss_pred             HHH-HHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCCcccCCCCHHHHHHHHHH
Confidence            998 66632       3345566667666554321100 00111122221   36789999999988754

>PRK06398 aldose dehydrogenase; Validated

Probab=99.96  E-value=1.7e-28  Score=219.52  Aligned_cols=195  Identities=19%  Similarity=0.153  Sum_probs=153.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|+||++|||||++|||+++|++|+++|++|++++|+...             ..++.++.||++|+++++++++++.+.
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~-------------~~~~~~~~~D~~~~~~i~~~~~~~~~~   69 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS-------------YNDVDYFKVDVSNKEQVIKGIDYVISK   69 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc-------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999998542             125788999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.        ||+.+..+.++...|+++|+
T Consensus        70 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKa  149 (258)
T PRK06398         70 YGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTRNAAAYVTSKH  149 (258)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCCCCchhhhhHH
Confidence            99999999999984  556788999999999999999999999999999764        55556666778899999999


Q ss_pred             cccCCCCcccc------ccCccCCCCcccCCHHHHH----------HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGSYF------NNCCRCPPSKAAQDEALAT----------KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..+.      .+++.+.|+...++.....          ...+..+.... .+++|+++|+|+|.+++|
T Consensus       150 al~-~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~  224 (258)
T PRK06398        150 AVL-GLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEMHPMKRVGKPEEVAYVVAF  224 (258)
T ss_pred             HHH-HHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhcCCcCCCcCHHHHHHHHHH
Confidence            998 6664321      4556666766655432110          00000111111 137899999999998876

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.96  E-value=2.2e-28  Score=219.11  Aligned_cols=208  Identities=18%  Similarity=0.177  Sum_probs=164.1

Q ss_pred             CCCCceEEEcCCCC-CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANT-GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~-GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+++|++|||||+| |||+++++.|+++|++|++++|+.+++++..+++....++.++.++.+|++++++++++++++.+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            46789999999985 99999999999999999999999888877777776544345788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .+|++|+||||||+.  .++.+.+.++|++++++|+.+++++++.++|+|...         +|+.+..+.++...|+++
T Consensus        94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~s  173 (262)
T PRK07831         94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQHGQAHYAAA  173 (262)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCCcchHHH
Confidence            999999999999974  456788899999999999999999999999999764         244555566788899999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ +++.       .+..+++.+.|+...++........+..+.+.+ .+++|+++|+|||.+++|
T Consensus       174 Kaal~-~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~  241 (262)
T PRK07831        174 KAGVM-ALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREAFGRAAEPWEVANVIAF  241 (262)
T ss_pred             HHHHH-HHHHHHHHHhCccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99998 7663       244566767777665542211000111111211 237999999999999876

>KOG4169|consensus

Probab=99.96  E-value=1.5e-28  Score=206.12  Aligned_cols=152  Identities=23%  Similarity=0.328  Sum_probs=139.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++.||++++||+.||||++++++|+++|+.+.++..+.|.. +...+|.+..|..++.+++||+++..++++.++++.+
T Consensus         1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~-~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~   79 (261)
T KOG4169|consen    1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENP-EAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILA   79 (261)
T ss_pred             CcccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCH-HHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHH
Confidence            468899999999999999999999999999888777666664 4566788888889999999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----------ss~~~~~~~~~~~~y~as  267 (328)
                      .||.||+|||+||+.      ++.+|++++++|+.|.++-++.++|+|.+.           ||+.|..+.+...+|+||
T Consensus        80 ~fg~iDIlINgAGi~------~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~pVY~As  153 (261)
T KOG4169|consen   80 TFGTIDILINGAGIL------DDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYAAS  153 (261)
T ss_pred             HhCceEEEEcccccc------cchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccchhhhhc
Confidence            999999999999997      467899999999999999999999999887           899999999999999999


Q ss_pred             CccccCCCCcc
Q psy4246         268 SLDLSLPVSGS  278 (328)
Q Consensus       268 k~al~~~~~g~  278 (328)
                      |+++. +++++
T Consensus       154 KaGVv-gFTRS  163 (261)
T KOG4169|consen  154 KAGVV-GFTRS  163 (261)
T ss_pred             cccee-eeehh
Confidence            99999 99965

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.96  E-value=2.8e-28  Score=217.13  Aligned_cols=203  Identities=21%  Similarity=0.221  Sum_probs=158.3

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee-CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      |++|++|||||++|||+++|++|+++|++|++++ ++.+..++...++...  +.++..+.+|+++.++++.+++++.+.
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGVEALYSSLDNE   79 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhc--CCceEEEecccCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999875 5666666666666543  456788999999999999999888753


Q ss_pred             ----cC--CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhh
Q psy4246         200 ----FR--SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYC  265 (328)
Q Consensus       200 ----~g--~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~  265 (328)
                          ++  ++|+||||||+.  .+..+.+.++|++++++|+.|+++++++++|.|.+.      +|+.+..+.++...|+
T Consensus        80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  159 (252)
T PRK12747         80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYS  159 (252)
T ss_pred             hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCCCchhHH
Confidence                34  899999999974  345678899999999999999999999999999875      5555666667788999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHH--HHHHHHHHH--HHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLW--KLSEEMIQS--VVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ +++.       .+..+++.+.|++..++...  ...  ...++....  +++|+++|+|||.+++|
T Consensus       160 ~sKaa~~-~~~~~la~e~~~~girvn~v~Pg~v~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  230 (252)
T PRK12747        160 MTKGAIN-TMTFTLAKQLGARGITVNAILPGFIKTDMNA--ELLSDPMMKQYATTISAFNRLGEVEDIADTAAF  230 (252)
T ss_pred             HHHHHHH-HHHHHHHHHHhHcCCEEEEEecCCccCchhh--hcccCHHHHHHHHhcCcccCCCCHHHHHHHHHH
Confidence            9999998 6663       33566777778777665321  111  111112211  37899999999998875

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.96  E-value=2.3e-28  Score=220.82  Aligned_cols=207  Identities=18%  Similarity=0.233  Sum_probs=164.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++++++++.+++++.+
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~   83 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA--GGEALAVKADVLDKESLEQARQQILE   83 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999988877777777553  45789999999999999999999999


Q ss_pred             hcCCccEEEEccccCC-----------------CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccc
Q psy4246         199 KFRSLNILVLNAGVFG-----------------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLF  253 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~-----------------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~  253 (328)
                      +++++|+||||||+..                 ++.+.+.++|++++++|+.+++++++.++|.|.+.        +|+.
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~  163 (278)
T PRK08277         84 DFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMN  163 (278)
T ss_pred             HcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccch
Confidence            9999999999999642                 24567889999999999999999999999999764        4555


Q ss_pred             eecccccchhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH------HHHHHHHHH-HHHhccccc
Q psy4246         254 ARQQGAATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL------WKLSEEMIQ-SVVSTWLEE  319 (328)
Q Consensus       254 ~~~~~~~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~r~g~p  319 (328)
                      +..+.++...|+++|++++ +++..       +..+++.+.|+...++.......      .+..+.... .+++|+++|
T Consensus       164 ~~~~~~~~~~Y~~sK~a~~-~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~  242 (278)
T PRK08277        164 AFTPLTKVPAYSAAKAAIS-NFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKILAHTPMGRFGKP  242 (278)
T ss_pred             hcCCCCCCchhHHHHHHHH-HHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHHhccCCccCCCCH
Confidence            5666677889999999998 66632       34556667777666553211000      011122222 237999999


Q ss_pred             ccccccccC
Q psy4246         320 TTERGEVVF  328 (328)
Q Consensus       320 ~dia~~v~F  328 (328)
                      +|||++++|
T Consensus       243 ~dva~~~~~  251 (278)
T PRK08277        243 EELLGTLLW  251 (278)
T ss_pred             HHHHHHHHH
Confidence            999999876

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.95  E-value=1e-28  Score=221.40  Aligned_cols=203  Identities=17%  Similarity=0.179  Sum_probs=157.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|++|++|||||++|||+++|+.|+++|++|++++|+.+.++.+..++     +.++.++.+|++|.++++++++++.+.
T Consensus         3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (263)
T PRK06200          3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVDA   77 (263)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999999987776655443     346788999999999999999999999


Q ss_pred             cCCccEEEEccccC---CCCCCCChhH----HHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhh
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTEDG----FETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYC  265 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~~~----~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~  265 (328)
                      ++++|+||||||+.   .++.+.+.++    |++++++|+.+++++++.++|.|.+.       +|+.+..+.++...|+
T Consensus        78 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~  157 (263)
T PRK06200         78 FGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGGGGPLYT  157 (263)
T ss_pred             cCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCCchhH
Confidence            99999999999984   3344566655    89999999999999999999998764       4555566667788999


Q ss_pred             ccCccccCCCCccc------cccCccCCCCcccCCHHHH----------HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSGSY------FNNCCRCPPSKAAQDEALA----------TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++..+      ..+++.+.|++..++....          ....+..+.... .+++|+++|+|||++++|
T Consensus       158 ~sK~a~~-~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~f  236 (263)
T PRK06200        158 ASKHAVV-GLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAITPLQFAPQPEDHTGPYVL  236 (263)
T ss_pred             HHHHHHH-HHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcCCCCCCCCCHHHHhhhhhh
Confidence            9999998 666321      2566667777665542110          000111111211 248999999999999987

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.95  E-value=4e-28  Score=216.49  Aligned_cols=207  Identities=22%  Similarity=0.275  Sum_probs=165.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++++||++|||||++|||+++|++|+++|++|++++|+.+++++...++...  +.++.++.+|++|.++++++++++.+
T Consensus         6 ~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (255)
T PRK07523          6 FDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEA   83 (255)
T ss_pred             cCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHH
Confidence            3688999999999999999999999999999999999988877777766543  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||..  .++.+.+.++|++++++|+.+++++++++.++|.++        ||+.+..+.++...|+++|
T Consensus        84 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~y~~sK  163 (255)
T PRK07523         84 EIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARPGIAPYTATK  163 (255)
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCCCCCccHHHHH
Confidence            999999999999985  456778899999999999999999999999999764        4555556677889999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ +++.       .+..+++.+.|++..++...... .....+.+.. .+++|++.|+|||.+++|
T Consensus       164 ~a~~-~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  231 (255)
T PRK07523        164 GAVG-NLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTPAGRWGKVEELVGACVF  231 (255)
T ss_pred             HHHH-HHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9998 7663       33456666667766555322110 0111112211 237899999999998865

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.95  E-value=4.3e-28  Score=216.69  Aligned_cols=206  Identities=21%  Similarity=0.323  Sum_probs=160.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|+.|+++|++|++++|+ +..+++.+.+...  +.++.++.+|+++.++++++++++.+
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~   87 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE--GRKVTFVQVDLTKPESAEKVVKEALE   87 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999998 5555555554433  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .+|++|++|||||..  .++.+.+.++|++++++|+.++++++++++|+|.+.        ||+.+..+.+....|+++|
T Consensus        88 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  167 (258)
T PRK06935         88 EFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKFVPAYTASK  167 (258)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCCCchhhHHHH
Confidence            999999999999985  455677889999999999999999999999999765        4445556667788999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH-HHHHHHHHHH-HHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++++ +++..       +..+++.+.|+...++....... ....+..... +.+|+++|+|+|..++|
T Consensus       168 ~a~~-~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  235 (258)
T PRK06935        168 HGVA-GLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIPAGRWGEPDDLMGAAVF  235 (258)
T ss_pred             HHHH-HHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            9998 66632       34556666677665543211000 0111122222 36899999999998876

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.95  E-value=8.4e-29  Score=225.17  Aligned_cols=210  Identities=12%  Similarity=0.130  Sum_probs=146.1

Q ss_pred             cCCCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHH--------hhCCCC-----eEEEEEc
Q psy4246         117 HGRDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKIL--------TEKPSA-----QCIAMEL  181 (328)
Q Consensus       117 ~~~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~--------~~~~~~-----~~~~~~~  181 (328)
                      |..+++||++|||||+  +|||+++|+.|+++|++|++.++.+ .+......+.        ....+.     ++..+.+
T Consensus         2 ~~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (299)
T PRK06300          2 LKIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDA   80 (299)
T ss_pred             CCcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhh
Confidence            4567899999999996  9999999999999999999987541 1111100000        000011     1111233


Q ss_pred             ccCCH------------------HHHHHHHHHHHHhcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHH
Q psy4246         182 NLCRL------------------KSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLT  239 (328)
Q Consensus       182 Dls~~------------------~~v~~~~~~~~~~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~  239 (328)
                      |+++.                  ++++++++++.+++|+||+||||||+.    .++.+++.++|+++|++|+.|+++++
T Consensus        81 d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~  160 (299)
T PRK06300         81 SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLL  160 (299)
T ss_pred             hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHH
Confidence            33333                  368999999999999999999999863    46778999999999999999999999


Q ss_pred             HHHHHHHHhcccc------ceecccccch-hhhccCccccCCCCc-------c-ccccCccCCCCcccCCHHHHHHHH-H
Q psy4246         240 LQLENALIKGAKL------FARQQGAATS-IYCATSLDLSLPVSG-------S-YFNNCCRCPPSKAAQDEALATKLW-K  303 (328)
Q Consensus       240 ~~~~~~~~~~ss~------~~~~~~~~~~-~y~ask~al~~~~~g-------~-~~~~~~~~~~~~~~~~~~~~~~~~-~  303 (328)
                      ++++|+|++++++      .+..+.++.. .|+++|+++. +++.       . +.++++.+.|+...++....-... +
T Consensus       161 ~a~~p~m~~~G~ii~iss~~~~~~~p~~~~~Y~asKaAl~-~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~~~~~~~~  239 (299)
T PRK06300        161 SHFGPIMNPGGSTISLTYLASMRAVPGYGGGMSSAKAALE-SDTKVLAWEAGRRWGIRVNTISAGPLASRAGKAIGFIER  239 (299)
T ss_pred             HHHHHHhhcCCeEEEEeehhhcCcCCCccHHHHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEeCCccChhhhcccccHH
Confidence            9999999876443      4444555554 7999999998 7662       2 356677778887766542110000 1


Q ss_pred             HHHHHHH-HHHhcccccccccccccC
Q psy4246         304 LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       304 ~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ..+.... .+++|+++|+|||.+++|
T Consensus       240 ~~~~~~~~~p~~r~~~peevA~~v~~  265 (299)
T PRK06300        240 MVDYYQDWAPLPEPMEAEQVGAAAAF  265 (299)
T ss_pred             HHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            1111111 237899999999998876

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.95  E-value=2.5e-28  Score=225.59  Aligned_cols=174  Identities=20%  Similarity=0.197  Sum_probs=147.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++++.
T Consensus         2 ~~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~~~~   79 (330)
T PRK06139          2 MGPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL--GAEVLVVPTDVTDADQVKALATQAA   79 (330)
T ss_pred             CcCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999988888777654  5688899999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.+|+||+||||||+.  +++.+.+.++|++++++|+.|++++++.++|+|.++        +|+.+..+.+....|+++
T Consensus        80 ~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p~~~~Y~as  159 (330)
T PRK06139         80 SFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQPYAAAYSAS  159 (330)
T ss_pred             HhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCCCchhHHHH
Confidence            9999999999999984  557788999999999999999999999999999875        555666677888999999


Q ss_pred             CccccCCCCccc--------cccCccCCCCcccCC
Q psy4246         268 SLDLSLPVSGSY--------FNNCCRCPPSKAAQD  294 (328)
Q Consensus       268 k~al~~~~~g~~--------~~~~~~~~~~~~~~~  294 (328)
                      |+++. +++...        ..+++...|+...++
T Consensus       160 Kaal~-~~~~sL~~El~~~~gI~V~~v~Pg~v~T~  193 (330)
T PRK06139        160 KFGLR-GFSEALRGELADHPDIHVCDVYPAFMDTP  193 (330)
T ss_pred             HHHHH-HHHHHHHHHhCCCCCeEEEEEecCCccCc
Confidence            99988 665321        234444555555444

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.95  E-value=1.2e-27  Score=210.05  Aligned_cols=174  Identities=13%  Similarity=0.116  Sum_probs=147.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++..+.+|++++++++++++++.+
T Consensus         1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (227)
T PRK08862          1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL--TDNVYSFQLKDFSQESIRHLFDAIEQ   78 (227)
T ss_pred             CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCCeEEEEccCCCHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999999888887777654  45788899999999999999999999


Q ss_pred             hcC-CccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---cccce---ecccccchhhhccC
Q psy4246         199 KFR-SLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKLFA---RQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g-~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~~~---~~~~~~~~~y~ask  268 (328)
                      ++| +||+||||||..   .++.+.+.++|.+.+++|+.+++.+++.++|+|.++   +++..   ..+.++...|+++|
T Consensus        79 ~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~Y~asK  158 (227)
T PRK08862         79 QFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDHQDLTGVESSN  158 (227)
T ss_pred             HhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCcchhHHHH
Confidence            999 999999999863   356788899999999999999999999999999763   44422   22345677899999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCH
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDE  295 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~  295 (328)
                      +++. +++       +.+..+++.+.|++..++.
T Consensus       159 aal~-~~~~~la~el~~~~Irvn~v~PG~i~t~~  191 (227)
T PRK08862        159 ALVS-GFTHSWAKELTPFNIRVGGVVPSIFSANG  191 (227)
T ss_pred             HHHH-HHHHHHHHHHhhcCcEEEEEecCcCcCCC
Confidence            9998 766       2355677888888887763

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.95  E-value=9.2e-28  Score=213.83  Aligned_cols=206  Identities=19%  Similarity=0.189  Sum_probs=163.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|++|+++||||++|||.++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|+++.++++.+++++.
T Consensus         2 ~~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~   79 (253)
T PRK06172          2 SMTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA--GGEALFVACDVTRDAEVKALVEQTI   79 (253)
T ss_pred             CcCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999988877777776544  4578999999999999999999999


Q ss_pred             HhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      +.+|++|+||||||+.   .+..+.+.++|++++++|+.++++++++++|+|.+.        +|..+..+.++...|++
T Consensus        80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~  159 (253)
T PRK06172         80 AAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAA  159 (253)
T ss_pred             HHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCCchhHH
Confidence            9999999999999985   235678899999999999999999999999998754        45555666778899999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH----HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL----WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++.+.|++..++..  +..    ....+.... .+++|+++|+|+|..++|
T Consensus       160 sKaa~~-~~~~~la~e~~~~~i~v~~i~PG~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~~~~  230 (253)
T PRK06172        160 SKHAVI-GLTKSAAIEYAKKGIRVNAVCPAVIDTDMF--RRAYEADPRKAEFAAAMHPVGRIGKVEEVASAVLY  230 (253)
T ss_pred             HHHHHH-HHHHHHHHHhcccCeEEEEEEeCCccChhh--hhhcccChHHHHHHhccCCCCCccCHHHHHHHHHH
Confidence            999998 66532       234555566766655432  211    111111111 136899999999998765

>PRK09242 tropinone reductase; Provisional

Probab=99.95  E-value=6.2e-28  Score=215.51  Aligned_cols=209  Identities=20%  Similarity=0.207  Sum_probs=166.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++++.|+++|++|++++|+.+.+++...++....++.++.++.+|++++++++.+++++.+
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   84 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED   84 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999988888877776655567899999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||..  .+..+.+.++|++++++|+.++++++++++|+|.++        ||+.+..+.++...|+++|
T Consensus        85 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK  164 (257)
T PRK09242         85 HWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVRSGAPYGMTK  164 (257)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCCCCcchHHHH
Confidence            999999999999984  455678999999999999999999999999999764        4555566667788999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHH-HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT-KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++. .+...       +..+++.+.|+...++..... ...+..+.... .+++|+++|+||+.+++|
T Consensus       165 ~a~~-~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  232 (257)
T PRK09242        165 AALL-QMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMRRVGEPEEVAAAVAF  232 (257)
T ss_pred             HHHH-HHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9998 66643       234555566666655432110 00111122222 237899999999998865

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=7.4e-28  Score=198.80  Aligned_cols=151  Identities=25%  Similarity=0.335  Sum_probs=134.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +.+.|.++|||||++|||+++|++|.+.|-+||+++|+++.++++..+      ...+....||+.|.++++++++.+++
T Consensus         1 mk~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~------~p~~~t~v~Dv~d~~~~~~lvewLkk   74 (245)
T COG3967           1 MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE------NPEIHTEVCDVADRDSRRELVEWLKK   74 (245)
T ss_pred             CcccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc------CcchheeeecccchhhHHHHHHHHHh
Confidence            357899999999999999999999999999999999999988876654      35788899999999999999999999


Q ss_pred             hcCCccEEEEccccCCC----CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         199 KFRSLNILVLNAGVFGL----GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      .|..+++||||||+...    ..+-..++.++.+++|+.++.+|+++++|++.++        ||-.+..+.....+||+
T Consensus        75 ~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~~PvYca  154 (245)
T COG3967          75 EYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCA  154 (245)
T ss_pred             hCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcccccccchh
Confidence            99999999999999633    1344567788999999999999999999999887        66677888889999999


Q ss_pred             cCccccCCCC
Q psy4246         267 TSLDLSLPVS  276 (328)
Q Consensus       267 sk~al~~~~~  276 (328)
                      +|+|+. .++
T Consensus       155 TKAaiH-syt  163 (245)
T COG3967         155 TKAAIH-SYT  163 (245)
T ss_pred             hHHHHH-HHH
Confidence            999998 554

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.95  E-value=7.2e-28  Score=214.40  Aligned_cols=207  Identities=21%  Similarity=0.283  Sum_probs=163.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||.+++++|+++|++|++++|+.+.++...+++...  +.++.++.+|+++.++++.+++++.+
T Consensus         4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (252)
T PRK07035          4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA--GGKAEALACHIGEMEQIDALFAHIRE   81 (252)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999988887777777654  45788899999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      .++++|+||||||..   .+..+.+.++|++++++|+.++++++++++|+|.+.        +|+.+..+.++...|+++
T Consensus        82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~s  161 (252)
T PRK07035         82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPGDFQGIYSIT  161 (252)
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCCCCCcchHHH
Confidence            999999999999974   455678899999999999999999999999999764        555566667788899999


Q ss_pred             CccccCCCCccc-------cccCccCCCCcccCCHHHHHH-HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATK-LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .+...+       ..+++.+.|+...++...... ..+..+..... +++|+++|+|+|+.++|
T Consensus       162 K~al~-~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  230 (252)
T PRK07035        162 KAAVI-SMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIPLRRHAEPSEMAGAVLY  230 (252)
T ss_pred             HHHHH-HHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCCCCCcCCHHHHHHHHHH
Confidence            99998 666433       345566666666554211100 00111111111 37899999999998875

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.95  E-value=9.4e-28  Score=214.70  Aligned_cols=200  Identities=18%  Similarity=0.199  Sum_probs=158.5

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...   .++.++.+|++|.++++++++++.++++++|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            6999999999999999999999999999999998888877777543   3678899999999999999999999999999


Q ss_pred             EEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh-c--------cccceecccccchhhhccCccc
Q psy4246         205 ILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-G--------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       205 ~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~--------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      +||||||+.    .++.+.+.++|.+.+++|+.+++++++.++|.|.+ .        ||..+..+.+....|+++|+++
T Consensus        79 ~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sKaa~  158 (259)
T PRK08340         79 ALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMPPLVLADVTRAGL  158 (259)
T ss_pred             EEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCCCchHHHHHHHHH
Confidence            999999974    23567788999999999999999999999998863 2        4445556667788999999999


Q ss_pred             cCCCCc-------cccccCccCCCCcccCCHHHHH--HH--------HH-HHHHHHHH-HHhcccccccccccccC
Q psy4246         272 SLPVSG-------SYFNNCCRCPPSKAAQDEALAT--KL--------WK-LSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~--~~--------~~-~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      . +++.       .+..+++.+.|+...++.....  ..        .+ ..+..... +++|+++|+|||.+++|
T Consensus       159 ~-~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~f  233 (259)
T PRK08340        159 V-QLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTPLKRTGRWEELGSLIAF  233 (259)
T ss_pred             H-HHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCCccCCCCHHHHHHHHHH
Confidence            8 7663       2345666677777766532211  00        00 11122222 48999999999999886

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.95  E-value=1.9e-27  Score=212.69  Aligned_cols=204  Identities=15%  Similarity=0.218  Sum_probs=156.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++|+.. ..+..+++...  +.++.++.+|+++.++++++++++.+
T Consensus         4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK12823          4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAA--GGEALALTADLETYAGAQAAMAAAVE   80 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhc--CCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence            4588999999999999999999999999999999999853 44455555443  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      .++++|+||||||..   .++.+.+.++|++.+++|+.+++++++.++|+|.+.        ||+.+.  ......|+++
T Consensus        81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--~~~~~~Y~~s  158 (260)
T PRK12823         81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATR--GINRVPYSAA  158 (260)
T ss_pred             HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCcccc--CCCCCccHHH
Confidence            999999999999963   566788999999999999999999999999999764        232221  2345689999


Q ss_pred             CccccCCCCccc-------cccCccCCCCcccCCHHHHHH------------HHHHHHHHH-HHHHhccccccccccccc
Q psy4246         268 SLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATK------------LWKLSEEMI-QSVVSTWLEETTERGEVV  327 (328)
Q Consensus       268 k~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~r~g~p~dia~~v~  327 (328)
                      |++++ .++..+       ..+++.+.|+...++......            ..+..++.. ..+++|+++|+|||.+++
T Consensus       159 K~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~  237 (260)
T PRK12823        159 KGGVN-ALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKRYGTIDEQVAAIL  237 (260)
T ss_pred             HHHHH-HHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCcccCCCHHHHHHHHH
Confidence            99998 666432       455666777766664311000            011111121 124789999999999887


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       238 ~  238 (260)
T PRK12823        238 F  238 (260)
T ss_pred             H
Confidence            6

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.95  E-value=2.6e-27  Score=212.53  Aligned_cols=208  Identities=18%  Similarity=0.269  Sum_probs=163.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.||+++.++++++++++.
T Consensus         5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   82 (265)
T PRK07097          5 LFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL--GIEAHGYVCDVTDEDGVQAMVSQIE   82 (265)
T ss_pred             ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999988887777666543  4578999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.++++|+||||||+.  .++.+.+.++|++++++|+.|++.+++.++|+|.+.        +|..+..+.++...|+++
T Consensus        83 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~s  162 (265)
T PRK07097         83 KEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAA  162 (265)
T ss_pred             HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCccHHHH
Confidence            9999999999999985  445678899999999999999999999999999764        444555666778899999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH-------HHHHHHHH-HHHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL-------WKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      |+++. .++..       +..+++.+.|+...++.......       ....+... ..+++|+++|+|+|..++|
T Consensus       163 Kaal~-~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  237 (265)
T PRK07097        163 KGGLK-MLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTPAARWGDPEDLAGPAVF  237 (265)
T ss_pred             HHHHH-HHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence            99998 66633       23455666677665543211100       00111111 1236899999999988765

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.95  E-value=2.5e-27  Score=211.90  Aligned_cols=205  Identities=18%  Similarity=0.192  Sum_probs=159.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|++|++|||||++|||+++|+.|+++|++|++++|+.+++++...++.... +.++.++.+|++++++++++++.  
T Consensus         2 ~~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~--   78 (259)
T PRK06125          2 DLHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAE--   78 (259)
T ss_pred             CcCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHH--
Confidence            346889999999999999999999999999999999999888877777776543 45788999999999999888764  


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                        ++++|+||||||+.  .++.+.+.++|++++++|+.++++++++++|.|.+.        +|..+..+.+....|+++
T Consensus        79 --~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~y~as  156 (259)
T PRK06125         79 --AGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPDADYICGSAG  156 (259)
T ss_pred             --hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCCCCchHhHHH
Confidence              48999999999985  456788999999999999999999999999999865        333444555667889999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHH---HH------HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT---KL------WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++. +++..       +..+++.+.|++..++.....   ..      .+..+.... .+++|+++|+|||.+++|
T Consensus       157 k~al~-~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  233 (259)
T PRK06125        157 NAALM-AFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGLPLGRPATPEEVADLVAF  233 (259)
T ss_pred             HHHHH-HHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccCCcCCCcCHHHHHHHHHH
Confidence            99997 66632       346677778887766532110   00      001111111 237899999999998876

>PRK05717 oxidoreductase; Validated

Probab=99.95  E-value=1.3e-27  Score=213.22  Aligned_cols=205  Identities=20%  Similarity=0.160  Sum_probs=157.5

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..+++||++|||||++|||+++|+.|+++|++|++++|+.++..+...++     +.++.++.+|+++.++++++++++.
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~   79 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEVL   79 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999877665544333     3468899999999999999999999


Q ss_pred             HhcCCccEEEEccccCC----CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~a  266 (328)
                      +.+|++|+||||||+..    ++.+.+.++|++++++|+.+++++++++.|+|.+.       ||..+..+.+....|++
T Consensus        80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~~~~~Y~~  159 (255)
T PRK05717         80 GQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEPDTEAYAA  159 (255)
T ss_pred             HHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCCCCcchHH
Confidence            99999999999999852    34567889999999999999999999999999664       55556666678889999


Q ss_pred             cCccccCCCCccc------cccCccCCCCcccCCHHHHHHHHHHHHH-HHHHHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGSY------FNNCCRCPPSKAAQDEALATKLWKLSEE-MIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .+...+      ..+++.+.|+...++............. ....+++|+++|+|||.+++|
T Consensus       160 sKaa~~-~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  227 (255)
T PRK05717        160 SKGGLL-ALTHALAISLGPEIRVNAVSPGWIDARDPSQRRAEPLSEADHAQHPAGRVGTVEDVAAMVAW  227 (255)
T ss_pred             HHHHHH-HHHHHHHHHhcCCCEEEEEecccCcCCccccccchHHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            999988 655322      1345556666655543211100111111 112247899999999988764

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.95  E-value=1.5e-27  Score=221.03  Aligned_cols=204  Identities=18%  Similarity=0.210  Sum_probs=162.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ..+++|++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++.+.+
T Consensus         4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~--g~~~~~v~~Dv~d~~~v~~~~~~~~~   81 (334)
T PRK07109          4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA--GGEALAVVADVADAEAVQAAADRAEE   81 (334)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999998888887777654  56889999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++|++|++|||||+.  .++.+.+.+++++++++|+.|++++++.++|+|.++        ||+.+..+.+....|+++|
T Consensus        82 ~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asK  161 (334)
T PRK07109         82 ELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIPLQSAYCAAK  161 (334)
T ss_pred             HCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCCcchHHHHHH
Confidence            999999999999974  556788999999999999999999999999999874        5666666777889999999


Q ss_pred             ccccCCCCccc---------cccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGSY---------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +++. +++..+         ..+++.+.|+...++..  ........ ....+..++.+|+|+|.+++|
T Consensus       162 ~a~~-~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~--~~~~~~~~-~~~~~~~~~~~pe~vA~~i~~  226 (334)
T PRK07109        162 HAIR-GFTDSLRCELLHDGSPVSVTMVQPPAVNTPQF--DWARSRLP-VEPQPVPPIYQPEVVADAILY  226 (334)
T ss_pred             HHHH-HHHHHHHHHHhhcCCCeEEEEEeCCCccCchh--hhhhhhcc-ccccCCCCCCCHHHHHHHHHH
Confidence            9988 665322         23445555665554421  11110000 011125678899999988764

>KOG1207|consensus

Probab=99.95  E-value=2.8e-29  Score=201.77  Aligned_cols=199  Identities=23%  Similarity=0.284  Sum_probs=162.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..+|.|+++++||++.|||+++++.|++.|+.|+.+.|+++.+..++++.     ...+..+..|+++++.+.+++..  
T Consensus         2 ~t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~-----p~~I~Pi~~Dls~wea~~~~l~~--   74 (245)
T KOG1207|consen    2 KTSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET-----PSLIIPIVGDLSAWEALFKLLVP--   74 (245)
T ss_pred             cccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC-----CcceeeeEecccHHHHHHHhhcc--
Confidence            34689999999999999999999999999999999999998887776553     33588899999998877666544  


Q ss_pred             HhcCCccEEEEcccc--CCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~--~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                        .+.+|.||||||+  ..++.+++.+.|+++|++|+.++++++|.+.+-+..+         ||..+.++..+..+||+
T Consensus        75 --v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~nHtvYca  152 (245)
T KOG1207|consen   75 --VFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDNHTVYCA  152 (245)
T ss_pred             --cCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCCceEEee
Confidence              3789999999998  4889999999999999999999999999976655544         67777888889999999


Q ss_pred             cCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHH---HHHHHHHHH-HhcccccccccccccC
Q psy4246         267 TSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWK---LSEEMIQSV-VSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~r~g~p~dia~~v~F  328 (328)
                      +|+|+. .++       |...++++...|....+++.  ..-|.   ..+.++.++ ++|+.+.+|+.++++|
T Consensus       153 tKaALD-mlTk~lAlELGp~kIRVNsVNPTVVmT~MG--~dnWSDP~K~k~mL~riPl~rFaEV~eVVnA~lf  222 (245)
T KOG1207|consen  153 TKAALD-MLTKCLALELGPQKIRVNSVNPTVVMTDMG--RDNWSDPDKKKKMLDRIPLKRFAEVDEVVNAVLF  222 (245)
T ss_pred             cHHHHH-HHHHHHHHhhCcceeEeeccCCeEEEeccc--ccccCCchhccchhhhCchhhhhHHHHHHhhhee
Confidence            999998 766       55666777776665555543  33343   333454444 9999999999999987

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.95  E-value=1.6e-27  Score=212.22  Aligned_cols=202  Identities=20%  Similarity=0.296  Sum_probs=158.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      ||++|||||++|||+++++.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.+.+++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF--PGQVLTVQMDVRNPEDVQKMVEQIDEKFGR   78 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999999999999999988777776666543  357889999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      +|+||||||..  .++.+.+.++|++++++|+.|+++++++++|+|.+.         +|+.+..+.++...|+++|+++
T Consensus        79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sKaa~  158 (252)
T PRK07677         79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGV  158 (252)
T ss_pred             ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCCCCcchHHHHHHH
Confidence            99999999963  455688999999999999999999999999998653         4555566667788999999998


Q ss_pred             cCCCCc--------cccccCccCCCCcccCCHHHHHHHHH---HHHHHHHH-HHhcccccccccccccC
Q psy4246         272 SLPVSG--------SYFNNCCRCPPSKAAQDEALATKLWK---LSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      . +++.        .+..+++.+.|++..+... ...++.   ..++..+. +++|+++|+|+|.+++|
T Consensus       159 ~-~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  225 (252)
T PRK07677        159 L-AMTRTLAVEWGRKYGIRVNAIAPGPIERTGG-ADKLWESEEAAKRTIQSVPLGRLGTPEEIAGLAYF  225 (252)
T ss_pred             H-HHHHHHHHHhCcccCeEEEEEeecccccccc-cccccCCHHHHHHHhccCCCCCCCCHHHHHHHHHH
Confidence            8 6653        2345666666776653221 111111   11122212 36899999999987754

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.95  E-value=2.5e-27  Score=211.46  Aligned_cols=207  Identities=21%  Similarity=0.260  Sum_probs=162.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +.|++|++|||||++|||+++++.|+++|++|++++|+.+..+....++...  +.++.++.+|+++.++++++++.+.+
T Consensus         7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~   84 (255)
T PRK06113          7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFALS   84 (255)
T ss_pred             cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999988877777776543  45788899999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVFGL-GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      .++++|+||||||+..+ ..+.+.++|++.+++|+.|+++++++++|+|.+.        ||+.+..+.++...|+++|+
T Consensus        85 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~  164 (255)
T PRK06113         85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKA  164 (255)
T ss_pred             HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCcchhHHHHH
Confidence            99999999999998532 2367889999999999999999999999999753        55566667778889999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +++ .+...       +..+++...|+...++........+..++..+. +++|+++|+|++.+++|
T Consensus       165 a~~-~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~  230 (255)
T PRK06113        165 AAS-HLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALF  230 (255)
T ss_pred             HHH-HHHHHHHHHhhhhCeEEEEEecccccccccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            998 66633       334566666776665432110001111222222 36899999999998765

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.95  E-value=6e-28  Score=213.75  Aligned_cols=195  Identities=25%  Similarity=0.315  Sum_probs=161.3

Q ss_pred             CCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc-CCccEE
Q psy4246         130 GAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF-RSLNIL  206 (328)
Q Consensus       130 Gas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~-g~id~l  206 (328)
                      |++  +|||+++|++|+++|++|++++|+.++++...+++....+ .+  ++.||++++++++++++++.+.+ |+||+|
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l   77 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG-AE--VIQCDLSDEESVEALFDEAVERFGGRIDIL   77 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT-SE--EEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC-Cc--eEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence            566  9999999999999999999999999988777888877653 34  59999999999999999999999 999999


Q ss_pred             EEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcccc------ceecccccchhhhccCccccCC
Q psy4246         207 VLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL------FARQQGAATSIYCATSLDLSLP  274 (328)
Q Consensus       207 vnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~------~~~~~~~~~~~y~ask~al~~~  274 (328)
                      |||+|..      .++.+.+.++|++++++|+.+++.++++++|+|.+.+++      .+..+.++...|+++|++++ +
T Consensus        78 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~~~~~y~~sKaal~-~  156 (241)
T PF13561_consen   78 VNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMPGYSAYSASKAALE-G  156 (241)
T ss_dssp             EEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBSTTTHHHHHHHHHHH-H
T ss_pred             EecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCccchhhHHHHHHHH-H
Confidence            9999974      345677889999999999999999999999999988555      44566778889999999999 7


Q ss_pred             CC-------cc-ccccCccCCCCcccCCHHHHHH-HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         275 VS-------GS-YFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       275 ~~-------g~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++       +. +.+++|.+.|++..++...... ..+..+...+. +++|+++|+|||++++|
T Consensus       157 l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~r~~~~~evA~~v~f  220 (241)
T PF13561_consen  157 LTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLGRLGTPEEVANAVLF  220 (241)
T ss_dssp             HHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTSSHBEHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhccCCCcCHHHHHHHHHH
Confidence            77       66 7888998888888876532211 12233333333 39999999999999886

...

>PRK06484 short chain dehydrogenase; Validated

Probab=99.95  E-value=1.2e-27  Score=234.74  Aligned_cols=203  Identities=17%  Similarity=0.227  Sum_probs=162.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+.||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++     +.++..+.+|++|+++++++++++.+.
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~  340 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVESAFAQIQAR  340 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999999999988777665544     446778999999999999999999999


Q ss_pred             cCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCcc
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      +|+||+||||||+.   .++.+.+.++|++++++|+.|++++++.++|+|.+.      ||..+..+.++...|+++|++
T Consensus       341 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  420 (520)
T PRK06484        341 WGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALPPRNAYCASKAA  420 (520)
T ss_pred             cCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCCCCchhHHHHHH
Confidence            99999999999985   356788999999999999999999999999999554      555667777888999999999


Q ss_pred             ccCCCCcc-------ccccCccCCCCcccCCHHHHHH--HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         271 LSLPVSGS-------YFNNCCRCPPSKAAQDEALATK--LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++ +++..       +..+++.+.|+...++......  .....+.+.+. +++|+++|+|||.+++|
T Consensus       421 l~-~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dia~~~~~  487 (520)
T PRK06484        421 VT-MLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPLGRLGDPEEVAEAIAF  487 (520)
T ss_pred             HH-HHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            98 76633       3456677777777665321100  00111122221 37899999999998875

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.95  E-value=1.9e-27  Score=212.16  Aligned_cols=202  Identities=21%  Similarity=0.241  Sum_probs=152.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|+++||||++|||+++|+.|+++|++|++++++.+..   .+++...    ++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~l~~~----~~~~~~~Dl~~~~~~~~~~~~~~~   75 (255)
T PRK06463          3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE---AKELREK----GVFTIKCDVGNRDQVKKSKEVVEK   75 (255)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHhC----CCeEEEecCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999887764432   2233221    467899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceec-ccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQ-QGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~-~~~~~~~y~as  267 (328)
                      .++++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|+|.+.        +|..+.. +.++...|+++
T Consensus        76 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~as  155 (255)
T PRK06463         76 EFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAAEGTTFYAIT  155 (255)
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCCCCccHhHHH
Confidence            999999999999985  456678899999999999999999999999999753        3333332 33567889999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHH----HHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW----KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ +++..       +..+++.+.|+...++........    ...+.... .+++|+++|+|+|.+++|
T Consensus       156 Kaa~~-~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  227 (255)
T PRK06463        156 KAGII-ILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTVLKTTGKPEDIANIVLF  227 (255)
T ss_pred             HHHHH-HHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCCcCCCcCHHHHHHHHHH
Confidence            99998 66633       345666667776655432110000    11111111 237899999999998775

>PLN02253 xanthoxin dehydrogenase

Probab=99.95  E-value=4.1e-27  Score=212.90  Aligned_cols=207  Identities=20%  Similarity=0.167  Sum_probs=157.5

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..+|++|++|||||++|||+++|++|+++|++|++++|+.+..++...++.   .+.++.++.+|++|.++++++++.+.
T Consensus        13 ~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~   89 (280)
T PLN02253         13 SQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTV   89 (280)
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHH
Confidence            346889999999999999999999999999999999998777666655552   13578899999999999999999999


Q ss_pred             HhcCCccEEEEccccCC----CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhh
Q psy4246         198 KKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYC  265 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~  265 (328)
                      +.+|++|+||||||+..    ++.+.+.++|++++++|+.|+++++++++|+|.+.        +|+.+..+.++...|+
T Consensus        90 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~  169 (280)
T PLN02253         90 DKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLGPHAYT  169 (280)
T ss_pred             HHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCCCCcccH
Confidence            99999999999999852    35678899999999999999999999999999653        4445555666778999


Q ss_pred             ccCccccCCCCcc-------ccccCccCCCCcccCCHHHH--------HHHHHHHHHHHH--HH-Hhccccccccccccc
Q psy4246         266 ATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALA--------TKLWKLSEEMIQ--SV-VSTWLEETTERGEVV  327 (328)
Q Consensus       266 ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~~-~~r~g~p~dia~~v~  327 (328)
                      ++|++++ .++..       +..+++.+.|+...++....        ............  .. .++...|+|||.+++
T Consensus       170 ~sK~a~~-~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~dva~~~~  248 (280)
T PLN02253        170 GSKHAVL-GLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNANLKGVELTVDDVANAVL  248 (280)
T ss_pred             HHHHHHH-HHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCCCcCCCCCHHHHHHHHH
Confidence            9999998 66633       34556666666554432100        000000001111  11 256789999999887


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       249 ~  249 (280)
T PLN02253        249 F  249 (280)
T ss_pred             h
Confidence            6

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.95  E-value=1e-26  Score=207.75  Aligned_cols=201  Identities=17%  Similarity=0.210  Sum_probs=156.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHH----CCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         125 NAIVTGANTGIGFETARSLAL----HGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~----~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ++|||||++|||+++|++|++    +|++|++++|+.+.++++.+++....++.++.++.+|+++.++++++++++.+.+
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            689999999999999999997    7999999999999888888888654445688999999999999999999998887


Q ss_pred             CCc----cEEEEccccCCC----CCCC-ChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------cccceecccccc
Q psy4246         201 RSL----NILVLNAGVFGL----GFSH-TEDGFETTFQVNHLAHFYLTLQLENALIKG----------AKLFARQQGAAT  261 (328)
Q Consensus       201 g~i----d~lvnnAg~~~~----~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------ss~~~~~~~~~~  261 (328)
                      |.+    |+||||||+...    ..+. +.++|++++++|+.|++++++.++|+|.+.          ||+.+..+.++.
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~~~  161 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFKGW  161 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCCCc
Confidence            753    699999998532    1222 468999999999999999999999999752          444556667788


Q ss_pred             hhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHH------HHHHHHHH-HHHhccccccccccccc
Q psy4246         262 SIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW------KLSEEMIQ-SVVSTWLEETTERGEVV  327 (328)
Q Consensus       262 ~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~r~g~p~dia~~v~  327 (328)
                      ..|+++|++++ .++..       +..+++.+.|+...++...  ...      +..+.+.. .+++|+++|+|+|..++
T Consensus       162 ~~Y~asKaal~-~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~  238 (256)
T TIGR01500       162 ALYCAGKAARD-MLFQVLALEEKNPNVRVLNYAPGVLDTDMQQ--QVREESVDPDMRKGLQELKAKGKLVDPKVSAQKLL  238 (256)
T ss_pred             hHHHHHHHHHH-HHHHHHHHHhcCCCeEEEEecCCcccchHHH--HHHHhcCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            99999999998 66632       3345666677776665322  111      11112222 24899999999999887


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       239 ~  239 (256)
T TIGR01500       239 S  239 (256)
T ss_pred             H
Confidence            5

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.94  E-value=3.7e-27  Score=209.23  Aligned_cols=204  Identities=23%  Similarity=0.320  Sum_probs=155.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|+||++|||||++|||.++|++|+++|++|++++|+..  .+..+.+...  +.++.++.+|+++.+++..+++++.+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL--GRRFLSLTADLSDIEAIKALVDSAVEE   77 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999752  3333344332  457889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++++|+||||||+.  .+..+.+.++|++++++|+.++++++++++|+|.++         +|..+..+.+....|+++|
T Consensus        78 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK  157 (248)
T TIGR01832        78 FGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGIRVPSYTASK  157 (248)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCCCCchhHHHH
Confidence            99999999999985  345677889999999999999999999999999753         3334445556778899999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++. ++...       +..+++.+.|++..++...... .....+...+ .+.+|+++|+|+|.+++|
T Consensus       158 aa~~-~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  225 (248)
T TIGR01832       158 HGVA-GLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILERIPAGRWGTPDDIGGPAVF  225 (248)
T ss_pred             HHHH-HHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9998 65532       3456666777766665321100 0011111222 236899999999998765

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.94  E-value=3.5e-27  Score=210.74  Aligned_cols=203  Identities=18%  Similarity=0.179  Sum_probs=157.6

Q ss_pred             CCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCC-----------hhHHHHHHHHHHhhCCCCeEEEEEcccCC
Q psy4246         119 RDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRS-----------LDKANDAISKILTEKPSAQCIAMELNLCR  185 (328)
Q Consensus       119 ~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~-----------~~~~~~~~~~l~~~~~~~~~~~~~~Dls~  185 (328)
                      .+|+||++|||||+  +|||+++|++|+++|++|++++|+           .+...+..+++...  +.++.++.+|+++
T Consensus         2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~   79 (256)
T PRK12859          2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKN--GVKVSSMELDLTQ   79 (256)
T ss_pred             CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhc--CCeEEEEEcCCCC
Confidence            36899999999999  499999999999999999998642           22233334444433  5688999999999


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR  255 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~  255 (328)
                      .++++++++++.+.+|++|+||||||..  .++.+.+.++|++++++|+.|+++++++++|+|.+.        ||+.+.
T Consensus        80 ~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~  159 (256)
T PRK12859         80 NDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQ  159 (256)
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccC
Confidence            9999999999999999999999999974  456788999999999999999999999999999754        555666


Q ss_pred             cccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhccccccccccccc
Q psy4246         256 QQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVV  327 (328)
Q Consensus       256 ~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~  327 (328)
                      .+.++...|+++|+++. +++.       .+..+++.+.|++..++... +...   +.+.. .+++|+++|+|+|.+++
T Consensus       160 ~~~~~~~~Y~~sK~a~~-~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~-~~~~---~~~~~~~~~~~~~~~~d~a~~~~  234 (256)
T PRK12859        160 GPMVGELAYAATKGAID-ALTSSLAAEVAHLGITVNAINPGPTDTGWMT-EEIK---QGLLPMFPFGRIGEPKDAARLIK  234 (256)
T ss_pred             CCCCCchHHHHHHHHHH-HHHHHHHHHhhhhCeEEEEEEEccccCCCCC-HHHH---HHHHhcCCCCCCcCHHHHHHHHH
Confidence            66778899999999998 7652       23455666677766554211 1111   11111 13688999999998876


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       235 ~  235 (256)
T PRK12859        235 F  235 (256)
T ss_pred             H
Confidence            5

>KOG1199|consensus

Probab=99.94  E-value=1.7e-27  Score=191.37  Aligned_cols=199  Identities=20%  Similarity=0.191  Sum_probs=164.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +.+|-++|||||.||+|+++|++|+++|+.|++.+....+.++..+++     +.++.+..+|++++.+++..+..++.+
T Consensus         6 s~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel-----g~~~vf~padvtsekdv~aala~ak~k   80 (260)
T KOG1199|consen    6 STKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL-----GGKVVFTPADVTSEKDVRAALAKAKAK   80 (260)
T ss_pred             hhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh-----CCceEEeccccCcHHHHHHHHHHHHhh
Confidence            468889999999999999999999999999999999988888888887     789999999999999999999999999


Q ss_pred             cCCccEEEEccccC--------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cccceecc
Q psy4246         200 FRSLNILVLNAGVF--------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------------AKLFARQQ  257 (328)
Q Consensus       200 ~g~id~lvnnAg~~--------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss~~~~~~  257 (328)
                      ||++|.+|||||+.        ......+.|+|++++++|+.|+|+++++..-.|-+.              +|+++..+
T Consensus        81 fgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdg  160 (260)
T KOG1199|consen   81 FGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDG  160 (260)
T ss_pred             ccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecC
Confidence            99999999999983        122456889999999999999999999998888654              77788888


Q ss_pred             cccchhhhccCccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHHHH---Hhcccccccccccc
Q psy4246         258 GAATSIYCATSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQSV---VSTWLEETTERGEV  326 (328)
Q Consensus       258 ~~~~~~y~ask~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~r~g~p~dia~~v  326 (328)
                      ..++++|++||+++. +++-..       .++.+.+.|+  ..++.+...+.+.....+...   -.|+|+|.|.++.|
T Consensus       161 q~gqaaysaskgaiv-gmtlpiardla~~gir~~tiapg--lf~tpllsslpekv~~fla~~ipfpsrlg~p~eyahlv  236 (260)
T KOG1199|consen  161 QTGQAAYSASKGAIV-GMTLPIARDLAGDGIRFNTIAPG--LFDTPLLSSLPEKVKSFLAQLIPFPSRLGHPHEYAHLV  236 (260)
T ss_pred             ccchhhhhcccCceE-eeechhhhhcccCceEEEeeccc--ccCChhhhhhhHHHHHHHHHhCCCchhcCChHHHHHHH
Confidence            899999999999998 777322       2344444444  444455555666555554443   58999999988654

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.94  E-value=7.8e-27  Score=208.38  Aligned_cols=204  Identities=22%  Similarity=0.261  Sum_probs=158.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +.+.+|++|||||++|||+++|+.|+++|++|++++|+.+..++...++     +.++.++.+|++|+++++++++++.+
T Consensus         2 ~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (257)
T PRK07067          2 MRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVE   76 (257)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999988776665544     34688899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .++++|+||||||..  .++.+.+.++|+.++++|+.++++++++++++|.++         +|+.+..+.++...|+++
T Consensus        77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~s  156 (257)
T PRK07067         77 RFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEALVSHYCAT  156 (257)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCCCCchhhhh
Confidence            999999999999975  456778899999999999999999999999998653         444445566788999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHH--HH--------HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT--KL--------WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++. .+..       .+..+++...|+...++.....  ..        .+..+...+ .+++|++.|+|||.+++|
T Consensus       157 K~a~~-~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  234 (257)
T PRK07067        157 KAAVI-SYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVPLGRMGVPDDLTGMALF  234 (257)
T ss_pred             HHHHH-HHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Confidence            99988 6553       2345566666666554321100  00        011111111 137899999999998875

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.94  E-value=4.7e-27  Score=209.30  Aligned_cols=199  Identities=16%  Similarity=0.154  Sum_probs=154.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|++|||||++|||+++|+.|+++|++|++++|+.+.      .  .  .+.++.++.+|+++.++++++++.+.+
T Consensus         2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~------~--~--~~~~~~~~~~D~~~~~~~~~~~~~~~~   71 (252)
T PRK07856          2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE------T--V--DGRPAEFHAADVRDPDQVAALVDAIVE   71 (252)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh------h--h--cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999998654      1  1  145788899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .++++|+||||||+.  .+..+.+.++|++++++|+.+++.+++.+.|+|.+.         ||+.+..+.++...|+++
T Consensus        72 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~s  151 (252)
T PRK07856         72 RHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPGTAAYGAA  151 (252)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCCCCchhHHH
Confidence            999999999999975  345678899999999999999999999999998753         555566677788999999


Q ss_pred             CccccCCCCcccc------ccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGSYF------NNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .+...+.      .+++.+.|+...++...... ..+..+.+.. .+++|+++|+|+|.+++|
T Consensus       152 K~a~~-~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~  219 (252)
T PRK07856        152 KAGLL-NLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVPLGRLATPADIAWACLF  219 (252)
T ss_pred             HHHHH-HHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            99998 6653221      45555666666554321100 0011111111 137899999999998765

>PRK08643 acetoin reductase; Validated

Probab=99.94  E-value=8.1e-27  Score=208.11  Aligned_cols=203  Identities=20%  Similarity=0.233  Sum_probs=158.9

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||++|||+++++.|+++|++|++++|+.+.+++...++...  +.++.++.+|++++++++++++++.+++++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD--GGKAIAVKADVSDRDQVFAAVRQVVDTFGD   79 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999999999988877777776543  457888999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      ||+||||||+.  .+..+.+.++|++++++|+.+++++++.+++.|.+.         ||..+..+.++...|+++|+++
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~  159 (256)
T PRK08643         80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPELAVYSSTKFAV  159 (256)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCCCchhHHHHHHH
Confidence            99999999974  446678899999999999999999999999998653         4445556667788999999998


Q ss_pred             cCCCCcc-------ccccCccCCCCcccCCHHHH--HHHH-------HH-HHHHHHH-HHhcccccccccccccC
Q psy4246         272 SLPVSGS-------YFNNCCRCPPSKAAQDEALA--TKLW-------KL-SEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g~-------~~~~~~~~~~~~~~~~~~~~--~~~~-------~~-~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      + .+...       +..+++.+.|+...++....  ....       .+ ....... +.+|+.+|+|+|.+++|
T Consensus       160 ~-~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  233 (256)
T PRK08643        160 R-GLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDITLGRLSEPEDVANCVSF  233 (256)
T ss_pred             H-HHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccCCCCCCcCHHHHHHHHHH
Confidence            7 55532       33455666676665543211  1000       00 1111112 37899999999998875

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.3e-26  Score=209.29  Aligned_cols=173  Identities=17%  Similarity=0.221  Sum_probs=145.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ..|+||++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++++.+
T Consensus         2 ~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~   79 (275)
T PRK05876          2 DGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFR   79 (275)
T ss_pred             CCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999988888777777544  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .+|++|+||||||+.  +++.+.+.++|++++++|+.|++++++.++|.|.+.         ||+.+..+.++...|+++
T Consensus        80 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  159 (275)
T PRK05876         80 LLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVA  159 (275)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCCCCchHHHH
Confidence            999999999999984  566788999999999999999999999999999754         555666677888999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQD  294 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~  294 (328)
                      |+++. +++.       .+..+++.+.|+...++
T Consensus       160 K~a~~-~~~~~l~~e~~~~gi~v~~v~Pg~v~t~  192 (275)
T PRK05876        160 KYGVV-GLAETLAREVTADGIGVSVLCPMVVETN  192 (275)
T ss_pred             HHHHH-HHHHHHHHHhhhcCcEEEEEEeCccccc
Confidence            99977 5552       22344555556555443

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.94  E-value=2.7e-27  Score=212.41  Aligned_cols=198  Identities=18%  Similarity=0.212  Sum_probs=154.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++++.|+++|++|++++++.+...           ..++.++.+|++|+++++++++.+.+
T Consensus         5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~~~   73 (266)
T PRK06171          5 LNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ-----------HENYQFVPTDVSSAEEVNHTVAEIIE   73 (266)
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc-----------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3688999999999999999999999999999999998865421           23678899999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-----------CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccc
Q psy4246         199 KFRSLNILVLNAGVFGL-----------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGA  259 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~-----------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~  259 (328)
                      .++++|+||||||+..+           ..+.+.++|++++++|+.+++++++++.++|.+.        +|+.+..+.+
T Consensus        74 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~  153 (266)
T PRK06171         74 KFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSE  153 (266)
T ss_pred             HcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCCC
Confidence            99999999999997422           2357889999999999999999999999999764        5555666677


Q ss_pred             cchhhhccCccccCCCCcc-------ccccCccCCCCccc-CCH---HHHHH--------HHHHHHHHH---HHHHhccc
Q psy4246         260 ATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAA-QDE---ALATK--------LWKLSEEMI---QSVVSTWL  317 (328)
Q Consensus       260 ~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~-~~~---~~~~~--------~~~~~~~~~---~~~~~r~g  317 (328)
                      +...|+++|++++ +++..       +..+++.+.|+... +..   .....        ..+..+...   ..+++|++
T Consensus       154 ~~~~Y~~sK~a~~-~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~  232 (266)
T PRK06171        154 GQSCYAATKAALN-SFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYTKTSTIPLGRSG  232 (266)
T ss_pred             CCchhHHHHHHHH-HHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhcccccccCCCCC
Confidence            8899999999998 66632       34566666676553 211   11000        011112222   22489999


Q ss_pred             ccccccccccC
Q psy4246         318 EETTERGEVVF  328 (328)
Q Consensus       318 ~p~dia~~v~F  328 (328)
                      +|+|||.+++|
T Consensus       233 ~~~eva~~~~f  243 (266)
T PRK06171        233 KLSEVADLVCY  243 (266)
T ss_pred             CHHHhhhheee
Confidence            99999999987

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.94  E-value=9.8e-27  Score=213.87  Aligned_cols=175  Identities=34%  Similarity=0.447  Sum_probs=144.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|+||+++||||++|||+++|++|+++|++|++++|+.++.++..+++....++.++.++.||++|.++++++++++.+
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~   89 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA   89 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999998888888887765566889999999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecc------------c
Q psy4246         199 KFRSLNILVLNAGVFGL-GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQ------------G  258 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~------------~  258 (328)
                      .+++||+||||||+... ..+.+.++|+.+|++|+.|+|++++.++|.|.+.       +|..+..+            .
T Consensus        90 ~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~~~~  169 (313)
T PRK05854         90 EGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWERSY  169 (313)
T ss_pred             hCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccccccccC
Confidence            99999999999998643 3467889999999999999999999999999764       23222211            2


Q ss_pred             ccchhhhccCccccCCCCcc---------ccccCccCCCCcccCC
Q psy4246         259 AATSIYCATSLDLSLPVSGS---------YFNNCCRCPPSKAAQD  294 (328)
Q Consensus       259 ~~~~~y~ask~al~~~~~g~---------~~~~~~~~~~~~~~~~  294 (328)
                      .+...|++||.++. .++..         ...+++.+.|+...++
T Consensus       170 ~~~~~Y~~SK~a~~-~~~~~la~~~~~~~~gI~v~~v~PG~v~T~  213 (313)
T PRK05854        170 AGMRAYSQSKIAVG-LFALELDRRSRAAGWGITSNLAHPGVAPTN  213 (313)
T ss_pred             cchhhhHHHHHHHH-HHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence            34678999999988 55532         2345666777766554

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.94  E-value=5.4e-27  Score=211.79  Aligned_cols=195  Identities=17%  Similarity=0.109  Sum_probs=149.3

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++||||| +|||+++|++|+ +|++|++++|+.+.+++..+++...  +.++.++.||++|.++++++++++ +.+++
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~-~~~g~   76 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATA-QTLGP   76 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHH-HhcCC
Confidence            579999998 699999999997 8999999999988877777666543  457889999999999999999988 56899


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceeccc------------------
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQG------------------  258 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~------------------  258 (328)
                      +|+||||||+..     ..++|++++++|+.|++++++.++|+|.++      +|..+....                  
T Consensus        77 id~li~nAG~~~-----~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~  151 (275)
T PRK06940         77 VTGLVHTAGVSP-----SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEEL  151 (275)
T ss_pred             CCEEEECCCcCC-----chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccc
Confidence            999999999852     246799999999999999999999999765      333333221                  


Q ss_pred             ------------ccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHH---HHHHHHHHHHH-HHHhc
Q psy4246         259 ------------AATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT---KLWKLSEEMIQ-SVVST  315 (328)
Q Consensus       259 ------------~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~r  315 (328)
                                  .+...|++||+++. .++.       .+.++++.+.|+...++.....   ...+..+++.. .+++|
T Consensus       152 ~~~~~~~~~~~~~~~~~Y~asKaa~~-~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r  230 (275)
T PRK06940        152 LSLPFLQPDAIEDSLHAYQIAKRANA-LRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSPAGR  230 (275)
T ss_pred             cccccccccccCCccchhHHHHHHHH-HHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCCccc
Confidence                        24578999999988 6652       3456778888887776642111   00011122222 24799


Q ss_pred             ccccccccccccC
Q psy4246         316 WLEETTERGEVVF  328 (328)
Q Consensus       316 ~g~p~dia~~v~F  328 (328)
                      +++|+|||.+++|
T Consensus       231 ~~~peeia~~~~f  243 (275)
T PRK06940        231 PGTPDEIAALAEF  243 (275)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999876

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.4e-26  Score=207.79  Aligned_cols=208  Identities=17%  Similarity=0.209  Sum_probs=159.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++++++|++|||||++|||.++++.|+++|++|++++|+.+.++....++...  +.++.++.+|++++++++++++++.
T Consensus         4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~~   81 (264)
T PRK07576          4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA--GPEGLGVSADVRDYAAVEAAFAQIA   81 (264)
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999988777666666544  3467889999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccC
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask  268 (328)
                      +.++++|+||||||..  .++.+.+.++|++++++|+.|+++++++++|+|.+.       ||+.+..+.++...|+++|
T Consensus        82 ~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~~~~~~Y~asK  161 (264)
T PRK07576         82 DEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPMPMQAHVCAAK  161 (264)
T ss_pred             HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCCCCccHHHHHH
Confidence            9999999999999864  455678899999999999999999999999999754       4545556667788999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHH--HHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW--KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       ...+++.+.|+.............  ........ .+++|++.|+|+|..++|
T Consensus       162 ~a~~-~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  230 (264)
T PRK07576        162 AGVD-MLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQSVPLKRNGTKQDIANAALF  230 (264)
T ss_pred             HHHH-HHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            9998 66633       233445556665432222211100  01111111 136889999999987764

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.94  E-value=8.1e-27  Score=208.80  Aligned_cols=207  Identities=14%  Similarity=0.147  Sum_probs=158.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++|++|||||++|||+++|+.|+++|++|++++|+. +..+....++...  +.++.++.+|++|.++++++++.+.
T Consensus         3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~   80 (261)
T PRK08936          3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKA--GGEAIAVKGDVTVESDVVNLIQTAV   80 (261)
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEecCCCHHHHHHHHHHHH
Confidence            468999999999999999999999999999999988854 4455555566443  5678899999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                      +.++++|+||||||..  .+..+.+.++|++++++|+.+++++++.++++|.+.         +|+.+..+.++...|++
T Consensus        81 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~  160 (261)
T PRK08936         81 KEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWPLFVHYAA  160 (261)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCCCCcccHH
Confidence            9999999999999985  345678889999999999999999999999999764         44445556677889999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|+++. .+...       +..+++.+.|++..++...... -.+....... .+++|+++|+|++.+++|
T Consensus       161 sKaa~~-~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  230 (261)
T PRK08936        161 SKGGVK-LMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIPMGYIGKPEEIAAVAAW  230 (261)
T ss_pred             HHHHHH-HHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999988 55522       2345566666665554311100 0111111111 237899999999988765

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.94  E-value=3.5e-27  Score=207.97  Aligned_cols=196  Identities=17%  Similarity=0.188  Sum_probs=150.9

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||++|||+++|+.|+++|++|++++|+.+...   +.+...    .+.++.+|++|.++++++++++.+.+++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~   74 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQA----GAQCIQADFSTNAGIMAFIDELKQHTDG   74 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHHc----CCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence            578999999999999999999999999999999875432   233222    2577899999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------cccceecccccchhhhccCcc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      +|+||||||+.  ....+.+.++|++++++|+.+++++++.++|.|.+.          +|..+..+.++...|+++|++
T Consensus        75 id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~asKaa  154 (236)
T PRK06483         75 LRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSDKHIAYAASKAA  154 (236)
T ss_pred             ccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCCCCccHHHHHHH
Confidence            99999999974  334567889999999999999999999999999764          233445556678899999999


Q ss_pred             ccCCCCccc------cccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         271 LSLPVSGSY------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++ +++..+      ..+++.+.|++..++....+..++  +...+.+++|+++|+|||.++.|
T Consensus       155 l~-~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~va~~~~~  215 (236)
T PRK06483        155 LD-NMTLSFAAKLAPEVKVNSIAPALILFNEGDDAAYRQ--KALAKSLLKIEPGEEEIIDLVDY  215 (236)
T ss_pred             HH-HHHHHHHHHHCCCcEEEEEccCceecCCCCCHHHHH--HHhccCccccCCCHHHHHHHHHH
Confidence            99 766322      256677777766543211111111  11112247899999999998876

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.94  E-value=1.2e-26  Score=207.02  Aligned_cols=208  Identities=19%  Similarity=0.233  Sum_probs=163.5

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++||+++||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.++.++.||+++++++.++++++.
T Consensus         6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   83 (256)
T PRK06124          6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA--GGAAEALAFDIADEEAVAAAFARID   83 (256)
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999988877777777553  4578899999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      ..++++|+||||||..  .++.+.+.++|++.+++|+.+++.+++.+++.|.+.        ||+.+..+.++...|+++
T Consensus        84 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~s  163 (256)
T PRK06124         84 AEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAGDAVYPAA  163 (256)
T ss_pred             HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCCCccHhHHH
Confidence            9999999999999985  456778899999999999999999999999999754        555666677788999999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++. ++...       ...+++.+.|+...++....... .+..+.... .+++|+..|+|++.+++|
T Consensus       164 K~a~~-~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  232 (256)
T PRK06124        164 KQGLT-GLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRTPLGRWGRPEEIAGAAVF  232 (256)
T ss_pred             HHHHH-HHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99988 65532       23445556666665553211000 011111111 137889999999988764

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.94  E-value=9.7e-27  Score=208.66  Aligned_cols=207  Identities=17%  Similarity=0.203  Sum_probs=161.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++++|++|||||++|||+++++.|+++|++|++++|+.+++++....+...  +.++.++.+|+++++++.++++++.+
T Consensus         6 ~~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (263)
T PRK07814          6 FRLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEATAGLAGQAVE   83 (263)
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999988877777766543  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .++++|+||||||..  .+..+.+.++++.++++|+.+++.+++++.++|.+.         ||+.+..+.++...|+++
T Consensus        84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~s  163 (263)
T PRK07814         84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGRGFAAYGTA  163 (263)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCCCCchhHHH
Confidence            999999999999974  345678899999999999999999999999999762         566667777889999999


Q ss_pred             CccccCCCCcccc------ccCccCCCCcccCCHHHHH-HHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGSYF------NNCCRCPPSKAAQDEALAT-KLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+++. .+...+.      .+++.+.|+...++..... ...+....+... ++.|+++|+|+|.+++|
T Consensus       164 K~a~~-~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  231 (263)
T PRK07814        164 KAALA-HYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKATPLRRLGDPEDIAAAAVY  231 (263)
T ss_pred             HHHHH-HHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99988 6553322      2444555665544421100 000111111111 36788999999988775

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.94  E-value=8.8e-27  Score=213.53  Aligned_cols=204  Identities=19%  Similarity=0.214  Sum_probs=153.5

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +..+|+||++|||||++|||+++|++|+++|++|++++++. +..++..+++...  +.++.++.+|++|.++++++++.
T Consensus         6 ~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~   83 (306)
T PRK07792          6 NTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVAT   83 (306)
T ss_pred             CCcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34578999999999999999999999999999999998753 4556666666553  56889999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCC--CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------------cccceeccc
Q psy4246         196 YQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------------AKLFARQQG  258 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------------ss~~~~~~~  258 (328)
                      +.+ +|++|+||||||+..  .+.+.+.++|++++++|+.|+++++++++++|.+.               +|..+..+.
T Consensus        84 ~~~-~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~  162 (306)
T PRK07792         84 AVG-LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGP  162 (306)
T ss_pred             HHH-hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCC
Confidence            998 999999999999863  45678899999999999999999999999998742               333445556


Q ss_pred             ccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         259 AATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       259 ~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++...|+++|+++. +++.       .+..+++.+.|+. .+.  +............. ......+|+|+|.+++|
T Consensus       163 ~~~~~Y~asKaal~-~l~~~la~e~~~~gI~vn~i~Pg~-~t~--~~~~~~~~~~~~~~-~~~~~~~pe~va~~v~~  234 (306)
T PRK07792        163 VGQANYGAAKAGIT-ALTLSAARALGRYGVRANAICPRA-RTA--MTADVFGDAPDVEA-GGIDPLSPEHVVPLVQF  234 (306)
T ss_pred             CCCchHHHHHHHHH-HHHHHHHHHhhhcCeEEEEECCCC-CCc--hhhhhccccchhhh-hccCCCCHHHHHHHHHH
Confidence            67789999999998 7652       3456667666763 222  21111110011100 11233478888887754

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.1e-26  Score=209.59  Aligned_cols=200  Identities=17%  Similarity=0.152  Sum_probs=153.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-------HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-------ANDAISKILTEKPSAQCIAMELNLCRLKSVKK  191 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  191 (328)
                      +++++|++|||||++|||.++|+.|+++|++|++++|+.+.       +++..+++...  +.++.++.+|+++.+++++
T Consensus         2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~   79 (273)
T PRK08278          2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA--GGQALPLVGDVRDEDQVAA   79 (273)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHH
Confidence            45789999999999999999999999999999999997642       34444555443  5578899999999999999


Q ss_pred             HHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--ccc------ceeccc--c
Q psy4246         192 FAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKL------FARQQG--A  259 (328)
Q Consensus       192 ~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--ss~------~~~~~~--~  259 (328)
                      +++++.+.++++|+||||||+.  .+..+.+.++|++++++|+.|+++++++++|+|+++  +++      .+..+.  +
T Consensus        80 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~  159 (273)
T PRK08278         80 AVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPKWFA  159 (273)
T ss_pred             HHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccccccC
Confidence            9999999999999999999984  456678899999999999999999999999999865  222      233333  6


Q ss_pred             cchhhhccCccccCCCCcc-------ccccCccCCCCc-ccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         260 ATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSK-AAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       260 ~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +...|+++|++++ .+...       +..+++.+.|+. ..+  ........     ....++++.+|+++|..++|
T Consensus       160 ~~~~Y~~sK~a~~-~~~~~la~el~~~~I~v~~i~Pg~~i~t--~~~~~~~~-----~~~~~~~~~~p~~va~~~~~  228 (273)
T PRK08278        160 PHTAYTMAKYGMS-LCTLGLAEEFRDDGIAVNALWPRTTIAT--AAVRNLLG-----GDEAMRRSRTPEIMADAAYE  228 (273)
T ss_pred             CcchhHHHHHHHH-HHHHHHHHHhhhcCcEEEEEeCCCcccc--HHHHhccc-----ccccccccCCHHHHHHHHHH
Confidence            6789999999998 65532       334555566653 333  22221111     01236788999999988764

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.6e-26  Score=206.69  Aligned_cols=198  Identities=22%  Similarity=0.227  Sum_probs=153.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+++||++|||||++|||.+++++|+++|++|++++|+.+..      .     ..++.++.+|++|.++++++++++.+
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~------~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   73 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD------L-----PEGVEFVAADLTTAEGCAAVARAVLE   73 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh------c-----CCceeEEecCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999986431      1     34678899999999999999999999


Q ss_pred             hcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccc-cchhhh
Q psy4246         199 KFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGA-ATSIYC  265 (328)
Q Consensus       199 ~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~-~~~~y~  265 (328)
                      .++++|+||||||..    .++.+.+.++|++++++|+.|++++++.++|+|.+.        ||+.+..+.+ ....|+
T Consensus        74 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~~Y~  153 (260)
T PRK06523         74 RLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLPESTTAYA  153 (260)
T ss_pred             HcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCCcchhH
Confidence            999999999999964    335678899999999999999999999999999764        4444444433 678899


Q ss_pred             ccCccccCCCCcc-------ccccCccCCCCcccCCHHHH--HHHH-------H-HHHHHH----HHHHhcccccccccc
Q psy4246         266 ATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALA--TKLW-------K-LSEEMI----QSVVSTWLEETTERG  324 (328)
Q Consensus       266 ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~--~~~~-------~-~~~~~~----~~~~~r~g~p~dia~  324 (328)
                      ++|++++ +++..       ...+++.+.|+...++....  ....       + ..+.+.    ..+++|+++|+|||+
T Consensus       154 ~sK~a~~-~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~  232 (260)
T PRK06523        154 AAKAALS-TYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIPLGRPAEPEEVAE  232 (260)
T ss_pred             HHHHHHH-HHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCccCCCCCHHHHHH
Confidence            9999998 66633       23556667777766653211  1111       1 111111    124789999999999


Q ss_pred             cccC
Q psy4246         325 EVVF  328 (328)
Q Consensus       325 ~v~F  328 (328)
                      +++|
T Consensus       233 ~~~~  236 (260)
T PRK06523        233 LIAF  236 (260)
T ss_pred             HHHH
Confidence            8875

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.94  E-value=2.3e-26  Score=205.27  Aligned_cols=206  Identities=17%  Similarity=0.167  Sum_probs=161.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|++|+++||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|.++++++++++.+.
T Consensus         2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (258)
T PRK07890          2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--GRRALAVPTDITDEDQCANLVALALER   79 (258)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999988877777666543  457889999999999999999999999


Q ss_pred             cCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ++++|+||||||..   .++.+.+.++|++++++|+.|++.+++++.+.|.+.       ||+.+..+.++...|+++|+
T Consensus        80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~  159 (258)
T PRK07890         80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQPKYGAYKMAKG  159 (258)
T ss_pred             cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCCCcchhHHHHH
Confidence            99999999999974   345677899999999999999999999999999763       55555666778889999999


Q ss_pred             cccCCCCccc-------cccCccCCCCcccCCHHHHH--H--------HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGSY-------FNNCCRCPPSKAAQDEALAT--K--------LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .+...+       ..+++.+.|+...++.....  .        ..+..+...+ .+++|+++|+|++.+++|
T Consensus       160 a~~-~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~  235 (258)
T PRK07890        160 ALL-AASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAANSDLKRLPTDDEVASAVLF  235 (258)
T ss_pred             HHH-HHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhcCCccccCCHHHHHHHHHH
Confidence            998 666433       34555566665544432110  0        0111111111 237889999999988765

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.94  E-value=3.9e-26  Score=204.01  Aligned_cols=205  Identities=18%  Similarity=0.188  Sum_probs=157.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||++|||.++|+.|+++|++|++++|+...++....++.......++.++.||+++.++++++++++.+.+++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999998887777777665432357899999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      +|++|||||..  .+..+.+.++|++.+++|+.|++++++++++.|.+.         +|..+..+.+....|+++|+++
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sKaa~  161 (259)
T PRK12384         82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGG  161 (259)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCCCCchhHHHHHHH
Confidence            99999999975  445778899999999999999999999999999754         2333445556778999999998


Q ss_pred             cCCCCcc-------ccccCccCCCCcccCCHHHHHHHH----------H-HHHHHH-HHHHhcccccccccccccC
Q psy4246         272 SLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW----------K-LSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      . ++...       +..+++.+.|+.............          + ..+... ..+++|++.|+||+.+++|
T Consensus       162 ~-~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~  236 (259)
T PRK12384        162 V-GLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLF  236 (259)
T ss_pred             H-HHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHH
Confidence            7 65532       345566666664322221111111          1 111111 1237899999999998875

>PRK12743 oxidoreductase; Provisional

Probab=99.94  E-value=1.7e-26  Score=206.15  Aligned_cols=201  Identities=16%  Similarity=0.144  Sum_probs=155.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +|++|||||++|||+++|++|+++|++|+++++ +.+.++...+++...  +.++.++.+|+++.++++++++++.+.++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH--GVRAEIRQLDLSDLPEGAQALDKLIQRLG   79 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            689999999999999999999999999998865 555566666666544  56889999999999999999999999999


Q ss_pred             CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCcc
Q psy4246         202 SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       202 ~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      ++|+||||||..  .++.+.+.++|++++++|+.+++++++++.++|.++         ||+.+..+.++...|+++|++
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a  159 (256)
T PRK12743         80 RIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPGASAYTAAKHA  159 (256)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCCCcchhHHHHHH
Confidence            999999999985  335677899999999999999999999999999653         444555666778899999999


Q ss_pred             ccCCCCc-------cccccCccCCCCcccCCHHHH--HHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         271 LSLPVSG-------SYFNNCCRCPPSKAAQDEALA--TKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g-------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +. .++.       .+..+++.+.|+...++....  ...+..  .....+++|+++|+|||.+++|
T Consensus       160 ~~-~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~dva~~~~~  223 (256)
T PRK12743        160 LG-GLTKAMALELVEHGILVNAVAPGAIATPMNGMDDSDVKPD--SRPGIPLGRPGDTHEIASLVAW  223 (256)
T ss_pred             HH-HHHHHHHHHhhhhCeEEEEEEeCCccCccccccChHHHHH--HHhcCCCCCCCCHHHHHHHHHH
Confidence            98 6552       233456666676665542211  111111  1111236899999999988765

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.94  E-value=2.6e-26  Score=204.16  Aligned_cols=203  Identities=15%  Similarity=0.163  Sum_probs=150.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+++|++|||||++|||+++|+.|+++|++|+++++ +.+..+....++     +.++.++.+|++++++++++++++.+
T Consensus         2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (253)
T PRK08642          2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL-----GDRAIALQADVTDREQVQAMFATATE   76 (253)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            568899999999999999999999999999988765 444444333332     34788999999999999999999999


Q ss_pred             hcCC-ccEEEEccccC--------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--ccc------ceecccccc
Q psy4246         199 KFRS-LNILVLNAGVF--------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKL------FARQQGAAT  261 (328)
Q Consensus       199 ~~g~-id~lvnnAg~~--------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--ss~------~~~~~~~~~  261 (328)
                      .+++ +|+||||||+.        .++.+.+.++|++++++|+.++++++++++|+|.+.  +++      .+..+..+.
T Consensus        77 ~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~  156 (253)
T PRK08642         77 HFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQNPVVPY  156 (253)
T ss_pred             HhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCCc
Confidence            9988 99999999963        235677889999999999999999999999999754  233      223344456


Q ss_pred             hhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         262 SIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       262 ~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ..|+++|++++ .+...       +..+++.+.|+...+.........+..+...+ .+++|+++|+|+|.+++|
T Consensus       157 ~~Y~~sK~a~~-~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  230 (253)
T PRK08642        157 HDYTTAKAALL-GLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATTPLRKVTTPQEFADAVLF  230 (253)
T ss_pred             cchHHHHHHHH-HHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence            78999999998 66633       33456666676665542211100011111111 237899999999998865

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.94  E-value=4.9e-26  Score=203.83  Aligned_cols=204  Identities=20%  Similarity=0.208  Sum_probs=155.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++|+.+ ..+...++...  +.++.++.+|+++.++++++++++.+
T Consensus         2 ~~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~   78 (263)
T PRK08226          2 GKLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKE   78 (263)
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999864 34444455432  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccce-ecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFA-RQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~-~~~~~~~~~y~as  267 (328)
                      .++++|+||||||+.  .++.+.+.+++++++++|+.+++++++.++|+|.+.        +|..+ ..+.++...|+++
T Consensus        79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~Y~~s  158 (263)
T PRK08226         79 KEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALT  158 (263)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccCCCCcchHHHH
Confidence            999999999999974  456778899999999999999999999999998654        34333 2345667899999


Q ss_pred             CccccCCCCccc-------cccCccCCCCcccCCHHHHHHHH---------HHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLW---------KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .+...+       ..+++.+.|+...++..  ....         .....+.+ .+++|+++|+|+|+.++|
T Consensus       159 K~a~~-~~~~~la~~~~~~~i~v~~i~pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~  233 (263)
T PRK08226        159 KAAIV-GLTKSLAVEYAQSGIRVNAICPGYVRTPMA--ESIARQSNPEDPESVLTEMAKAIPLRRLADPLEVGELAAF  233 (263)
T ss_pred             HHHHH-HHHHHHHHHhcccCcEEEEEecCcccCHHH--HhhhhhccCCCcHHHHHHHhccCCCCCCCCHHHHHHHHHH
Confidence            99998 666433       23445555665544422  2111         01111111 137889999999998875

>PRK06182 short chain dehydrogenase; Validated

Probab=99.94  E-value=4.1e-26  Score=205.65  Aligned_cols=199  Identities=22%  Similarity=0.198  Sum_probs=153.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|+++||||+||||+++|++|+++|++|++++|+.+++++..    .    ..+.++.+|++|.++++++++++.+.+
T Consensus         1 ~~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~   72 (273)
T PRK06182          1 MQKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S----LGVHPLSLDVTDEASIKAAVDTIIAEE   72 (273)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h----CCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence            36799999999999999999999999999999999987654432    1    247789999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      +++|+||||||+.  +++.+.+.++++.++++|+.|++.+++.++|.|++.        ||+.+..+.+....|+++|++
T Consensus        73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa  152 (273)
T PRK06182         73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTPLGAWYHATKFA  152 (273)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCCCCccHhHHHHHH
Confidence            9999999999984  456788999999999999999999999999999765        444445556667789999999


Q ss_pred             ccCCCC-------ccccccCccCCCCcccCCHHHH--HHH---------HH----HHHHHHHH-HHhccccccccccccc
Q psy4246         271 LSLPVS-------GSYFNNCCRCPPSKAAQDEALA--TKL---------WK----LSEEMIQS-VVSTWLEETTERGEVV  327 (328)
Q Consensus       271 l~~~~~-------g~~~~~~~~~~~~~~~~~~~~~--~~~---------~~----~~~~~~~~-~~~r~g~p~dia~~v~  327 (328)
                      ++ +++       ..+..+++.+.|+...++....  +.+         .+    ..+.+... ..+|+++|+|+|.+++
T Consensus       153 ~~-~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~  231 (273)
T PRK06182        153 LE-GFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRSTYGSGRLSDPSVIADAIS  231 (273)
T ss_pred             HH-HHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHHhhccccCCCHHHHHHHHH
Confidence            98 654       2334556666677665543110  000         00    11111111 2678999999998876


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      +
T Consensus       232 ~  232 (273)
T PRK06182        232 K  232 (273)
T ss_pred             H
Confidence            4

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.94  E-value=3.4e-26  Score=202.93  Aligned_cols=203  Identities=19%  Similarity=0.258  Sum_probs=156.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++++|+++||||++|||.+++++|+++|++|++++|+.+.+++..+++     +.++.++++|++|.+++..+++.+.+.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQALAEA   77 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999977666555444     457888999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCccc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      ++++|+||||||..  .++.+.+.++|++++++|+.++++++++++|+|.+.      +|..+..+.+....|+++|+++
T Consensus        78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~~~~~Y~~sK~a~  157 (249)
T PRK06500         78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMPNSSVYAASKAAL  157 (249)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCCCccHHHHHHHHH
Confidence            99999999999975  345678899999999999999999999999998765      4444555667788999999999


Q ss_pred             cCCCCccc-------cccCccCCCCcccCCHHHH----HH-HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         272 SLPVSGSY-------FNNCCRCPPSKAAQDEALA----TK-LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g~~-------~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      + .+...+       ..+++.+.|++..++....    .. .....+.+... +++|++.|+|+|.+++|
T Consensus       158 ~-~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  226 (249)
T PRK06500        158 L-SLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLGRFGTPEEIAKAVLY  226 (249)
T ss_pred             H-HHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            8 666332       3345555666555542211    00 11111222211 36789999999988765

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.93  E-value=5.5e-26  Score=202.97  Aligned_cols=206  Identities=17%  Similarity=0.145  Sum_probs=157.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|+||++|||||++|||+++|++|+++|++|++++|+.+.. +...++...  +.++.++.+|+++.++++++++++.
T Consensus         2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   78 (258)
T PRK08628          2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRAL--QPRAEFVQVDLTDDAQCRDAVEQTV   78 (258)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999988766 555566544  4578999999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC-CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCc
Q psy4246         198 KKFRSLNILVLNAGVFGL-GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +.++++|+||||||.... ..+.+.++|+..+++|+.+++++++.++|.|++.       ||+.+..+.+....|+++|+
T Consensus        79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~  158 (258)
T PRK08628         79 AKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQGGTSGYAAAKG  158 (258)
T ss_pred             HhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCCCCchhHHHHH
Confidence            999999999999997522 2334448999999999999999999999998764       55556666678899999999


Q ss_pred             cccCCCCccc-------cccCccCCCCcccCCHHHHHHHHH------HHHHHHHH-HH-hcccccccccccccC
Q psy4246         270 DLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWK------LSEEMIQS-VV-STWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~-~r~g~p~dia~~v~F  328 (328)
                      +++ ++...+       ..+++.+.|+...++.... .++.      ....+.+. ++ .|+.+|+|+|.+++|
T Consensus       159 a~~-~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  230 (258)
T PRK08628        159 AQL-ALTREWAVALAKDGVRVNAVIPAEVMTPLYEN-WIATFDDPEAKLAAITAKIPLGHRMTTAEEIADTAVF  230 (258)
T ss_pred             HHH-HHHHHHHHHHhhcCeEEEEEecCccCCHHHHH-HhhhccCHHHHHHHHHhcCCccccCCCHHHHHHHHHH
Confidence            998 666432       3455556666665542211 1111      01111111 23 478999999998865

>PRK06484 short chain dehydrogenase; Validated

Probab=99.93  E-value=3.2e-26  Score=224.51  Aligned_cols=201  Identities=17%  Similarity=0.207  Sum_probs=158.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++     +.++.++.+|++++++++++++++.++
T Consensus         2 ~~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (520)
T PRK06484          2 KAQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIREGFEQLHRE   76 (520)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999988777666555     456788999999999999999999999


Q ss_pred             cCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         200 FRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       200 ~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                      ++++|+||||||+.    .++.+.+.++|++++++|+.++++++++++|+|.+.         +|..+..+.++...|++
T Consensus        77 ~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~~~Y~a  156 (520)
T PRK06484         77 FGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALPKRTAYSA  156 (520)
T ss_pred             hCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCCCCchHHH
Confidence            99999999999984    345688999999999999999999999999999653         44556667778899999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHH----HHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKL----SEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|+++. +++..       +..+++.+.|+...++..  ..+...    ...... .+++|+++|+|+|.+++|
T Consensus       157 sKaal~-~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~v~~  227 (520)
T PRK06484        157 SKAAVI-SLTRSLACEWAAKGIRVNAVLPGYVRTQMV--AELERAGKLDPSAVRSRIPLGRLGRPEEIAEAVFF  227 (520)
T ss_pred             HHHHHH-HHHHHHHHHhhhhCeEEEEEccCCcCchhh--hhhcccchhhhHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999998 76632       234556666666554432  111110    111111 136789999999988764

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.93  E-value=5.1e-26  Score=202.72  Aligned_cols=202  Identities=22%  Similarity=0.281  Sum_probs=155.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|++|||||++|||.++|+.|+++|++|++++|+.+.. +...++    .+.++.++.+|++++++++++++++.+
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~   85 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-EVAAQL----LGGNAKGLVCDVSDSQSVEAAVAAVIS   85 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHh----hCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999987542 222222    134677899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||..  .+..+.+.++|++++++|+.|++++++.+.|+|.+.        ||+.+..+.+....|+++|
T Consensus        86 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK  165 (255)
T PRK06841         86 AFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALERHVAYCASK  165 (255)
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCCCCchHHHHH
Confidence            999999999999985  445677889999999999999999999999999764        5555566777889999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH--HHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK--LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       ...+++.+.|+...++...  ..+.  ..+...+ .+++|++.|+|+|..++|
T Consensus       166 ~a~~-~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  232 (255)
T PRK06841        166 AGVV-GMTKVLALEWGPYGITVNAISPTVVLTELGK--KAWAGEKGERAKKLIPAGRFAYPEEIAAAALF  232 (255)
T ss_pred             HHHH-HHHHHHHHHHHhhCeEEEEEEeCcCcCcccc--cccchhHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9988 65532       2344555556655544321  1111  1111111 237899999999988764

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.93  E-value=6.5e-26  Score=202.32  Aligned_cols=204  Identities=20%  Similarity=0.300  Sum_probs=158.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++++|+++||||++|||+++++.|+++|++|++++|+.++++++..++...  +.++.++.+|+++.++++++++++.+.
T Consensus         6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (258)
T PRK06949          6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE--GGAAHVVSLDVTDYQSIKAAVAHAETE   83 (258)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999998887777766544  457889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------------cccceecccccc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----------------AKLFARQQGAAT  261 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------------ss~~~~~~~~~~  261 (328)
                      ++++|+||||||..  .++.+.+.++|+.++++|+.+++.++++++|.|.+.                +|..+..+.+..
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~  163 (258)
T PRK06949         84 AGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLPQI  163 (258)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCCCc
Confidence            99999999999974  345677889999999999999999999999998644                222334445667


Q ss_pred             hhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH--HHHHHHHH-HHhcccccccccccccC
Q psy4246         262 SIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK--LSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       262 ~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ..|+++|+++. .++..       +..+++...|+...++...  ..|.  ......+. +++|+++|+|+|.+++|
T Consensus       164 ~~Y~~sK~a~~-~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  237 (258)
T PRK06949        164 GLYCMSKAAVV-HMTRAMALEWGRHGINVNAICPGYIDTEINH--HHWETEQGQKLVSMLPRKRVGKPEDLDGLLLL  237 (258)
T ss_pred             cHHHHHHHHHH-HHHHHHHHHHHhcCeEEEEEeeCCCcCCcch--hccChHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            88999999988 65533       2344555566665544321  1111  11112222 26899999999998875

>PRK06196 oxidoreductase; Provisional

Probab=99.93  E-value=1.5e-25  Score=206.21  Aligned_cols=203  Identities=28%  Similarity=0.343  Sum_probs=152.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..++++|++|||||++|||+++|++|+++|++|++++|+.+++++...++.      ++.++.+|++|.++++++++++.
T Consensus        21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~   94 (315)
T PRK06196         21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFL   94 (315)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHH
Confidence            446789999999999999999999999999999999999887776655542      36789999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee------------cc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR------------QQ  257 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~------------~~  257 (328)
                      +.++++|+||||||+..+....+.++|+.++++|+.|+++++++++|.|.+.        ||..+.            .+
T Consensus        95 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~  174 (315)
T PRK06196         95 DSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRG  174 (315)
T ss_pred             hcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCC
Confidence            9999999999999987555567788999999999999999999999999775        222111            11


Q ss_pred             cccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHH----HHH-HHHHHHHHHHHHh-cccccccccc
Q psy4246         258 GAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALA----TKL-WKLSEEMIQSVVS-TWLEETTERG  324 (328)
Q Consensus       258 ~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~-r~g~p~dia~  324 (328)
                      ......|+++|++++ .++.       .+..+++.+.|+...++....    ... ..+.. ....+++ ++.+|+|+|.
T Consensus       175 ~~~~~~Y~~SK~a~~-~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~  252 (315)
T PRK06196        175 YDKWLAYGQSKTANA-LFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVD-EHGNPIDPGFKTPAQGAA  252 (315)
T ss_pred             CChHHHHHHHHHHHH-HHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhh-hhhhhhhhhcCCHhHHHH
Confidence            234568999999987 5542       234556666777665542110    000 00000 0111233 6899999998


Q ss_pred             cccC
Q psy4246         325 EVVF  328 (328)
Q Consensus       325 ~v~F  328 (328)
                      .++|
T Consensus       253 ~~~~  256 (315)
T PRK06196        253 TQVW  256 (315)
T ss_pred             HHHH
Confidence            8875

>PRK05599 hypothetical protein; Provisional

Probab=99.93  E-value=3.7e-26  Score=203.02  Aligned_cols=168  Identities=17%  Similarity=0.197  Sum_probs=139.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |+++||||++|||+++|++|+ +|++|++++|+.++++++.+++.... +.++.++.||++|+++++++++++.+.+|++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRG-ATSVHVLSFDAQDLDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence            479999999999999999999 59999999999999888888886542 2357889999999999999999999999999


Q ss_pred             cEEEEccccCCC--CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCcccc
Q psy4246         204 NILVLNAGVFGL--GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       204 d~lvnnAg~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      |+||||||+...  ..+.+.+.+.+++++|+.+++++++.++|+|.++         ||+.+..+.++...|+++|+++.
T Consensus        79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~  158 (246)
T PRK05599         79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARRANYVYGSTKAGLD  158 (246)
T ss_pred             CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCcCCcchhhHHHHHH
Confidence            999999998632  3456777888999999999999999999999753         55566667778899999999998


Q ss_pred             CCCCc-------cccccCccCCCCcccCC
Q psy4246         273 LPVSG-------SYFNNCCRCPPSKAAQD  294 (328)
Q Consensus       273 ~~~~g-------~~~~~~~~~~~~~~~~~  294 (328)
                       +++.       .+..+++.+.|++..++
T Consensus       159 -~~~~~la~el~~~~I~v~~v~PG~v~T~  186 (246)
T PRK05599        159 -AFCQGLADSLHGSHVRLIIARPGFVIGS  186 (246)
T ss_pred             -HHHHHHHHHhcCCCceEEEecCCcccch
Confidence             6652       23455666677766654

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.9e-25  Score=201.88  Aligned_cols=199  Identities=17%  Similarity=0.184  Sum_probs=152.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+|++|||||+||||++++++|+++|++|++++|+.+.++.+...    . +.++..+.+|++|.+++.++++.+.+.++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~----~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   77 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL----H-PDRALARLLDVTDFDAIDAVVADAEATFG   77 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh----c-CCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999998766544322    1 34688899999999999999999999999


Q ss_pred             CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccc
Q psy4246         202 SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       202 ~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      ++|+||||||..  ++..+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++|+++
T Consensus        78 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~~~~~Y~~sK~a~  157 (277)
T PRK06180         78 PIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMPGIGYYCGSKFAL  157 (277)
T ss_pred             CCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCCCcchhHHHHHHH
Confidence            999999999984  456788899999999999999999999999999764        5556666777889999999998


Q ss_pred             cCCCCcc-------ccccCccCCCCcccCCH-------------HHHHHHHHHHHHH-HHHHHhccccccccccccc
Q psy4246         272 SLPVSGS-------YFNNCCRCPPSKAAQDE-------------ALATKLWKLSEEM-IQSVVSTWLEETTERGEVV  327 (328)
Q Consensus       272 ~~~~~g~-------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~r~g~p~dia~~v~  327 (328)
                      + .+...       +..+++.+.|+...++.             ... ..+...... ......++++|+|+|.+++
T Consensus       158 ~-~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dva~~~~  232 (277)
T PRK06180        158 E-GISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYD-ALFGPIRQAREAKSGKQPGDPAKAAQAIL  232 (277)
T ss_pred             H-HHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHH-HHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence            8 55522       33455555565543321             111 111111111 1112457889999998765

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.93  E-value=9.8e-26  Score=199.83  Aligned_cols=204  Identities=17%  Similarity=0.151  Sum_probs=154.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      |++|++|||||++|||+++|++|+++|++|++. +++....++..+++...  +.++..+.+|++|.++++++++++.+.
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKAL--GFDFIASEGNVGDWDSTKAAFDKVKAE   78 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999998885 44555555555555433  557888999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ++++|+||||||..  .++.+.+.++|++++++|+.+++.++++++|+|.+.        ||..+..+.++...|+++|+
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~y~~sK~  158 (246)
T PRK12938         79 VGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKA  158 (246)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCCCChhHHHHHH
Confidence            99999999999985  345678999999999999999999999999999765        44455566678889999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .+...       +..+++.+.|+...++.... ...+..+.... .+++|+++|+|++.+++|
T Consensus       159 a~~-~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (246)
T PRK12938        159 GIH-GFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA-IRPDVLEKIVATIPVRRLGSPDEIGSIVAW  223 (246)
T ss_pred             HHH-HHHHHHHHHhhhhCeEEEEEEecccCCchhhh-cChHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence            987 55532       23345555666555442211 00111122211 136789999999988765

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.8e-25  Score=203.40  Aligned_cols=207  Identities=18%  Similarity=0.155  Sum_probs=157.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++|++|||||++|||.++|++|+++|++|++++|+.+. .+.....+...  +.++.++.+|+++.++++++++++.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~  119 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETV  119 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999998543 44444444332  4578899999999999999999999


Q ss_pred             HhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccC
Q psy4246         198 KKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask  268 (328)
                      +.++++|+||||||..   .+..+.+.++|.+++++|+.+++++++++++.|.+.      ||+.+..+.+....|+++|
T Consensus       120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~~sK  199 (290)
T PRK06701        120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNETLIDYSATK  199 (290)
T ss_pred             HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCCCcchhHHHH
Confidence            9999999999999974   345678899999999999999999999999998764      4444555667778999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++. .+...       +..+++.+.|+...++........+..+.... ..++|++.|+|+|.+++|
T Consensus       200 ~a~~-~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  266 (290)
T PRK06701        200 GAIH-AFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQFGSNTPMQRPGQPEELAPAYVF  266 (290)
T ss_pred             HHHH-HHHHHHHHHhhhcCeEEEEEecCCCCCcccccccCHHHHHHHHhcCCcCCCcCHHHHHHHHHH
Confidence            9998 65532       23455556666555542111101111111111 137899999999988764

>PRK09186 flagellin modification protein A; Provisional

Probab=99.93  E-value=2.1e-25  Score=198.85  Aligned_cols=203  Identities=16%  Similarity=0.173  Sum_probs=153.8

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++....++..+.++.||++|++++.++++++.+.+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999988888777777554334456778999999999999999999999


Q ss_pred             CCccEEEEccccC-----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceeccc---------
Q psy4246         201 RSLNILVLNAGVF-----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQG---------  258 (328)
Q Consensus       201 g~id~lvnnAg~~-----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~---------  258 (328)
                      +++|+||||||..     .++.+.+.++|+.++++|+.++++++++++|+|.+.        ||+.+..+.         
T Consensus        82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~  161 (256)
T PRK09186         82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEIYEGTS  161 (256)
T ss_pred             CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccchhccccc
Confidence            9999999999853     345678899999999999999999999999999764        333332111         


Q ss_pred             -ccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         259 -AATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       259 -~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                       .....|+++|++++ .+..       .+..+++...|+....+..  ..+......  ....+++.+|+|+|.+++|
T Consensus       162 ~~~~~~Y~~sK~a~~-~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~--~~~~~~~~~--~~~~~~~~~~~dva~~~~~  234 (256)
T PRK09186        162 MTSPVEYAAIKAGII-HLTKYLAKYFKDSNIRVNCVSPGGILDNQP--EAFLNAYKK--CCNGKGMLDPDDICGTLVF  234 (256)
T ss_pred             cCCcchhHHHHHHHH-HHHHHHHHHhCcCCeEEEEEecccccCCCC--HHHHHHHHh--cCCccCCCCHHHhhhhHhh
Confidence             11246999999988 6652       2334556666665443321  111111111  1125688999999998876

>PRK05855 short chain dehydrogenase; Validated

Probab=99.93  E-value=1e-25  Score=223.25  Aligned_cols=206  Identities=17%  Similarity=0.130  Sum_probs=162.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ..+.++++|||||+||||+++|++|+++|++|++++|+.+.++++..++...  +.++.++.||++|+++++++++++.+
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~  388 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA--GAVAHAYRVDVSDADAMEAFAEWVRA  388 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999998888877777554  45789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .+|++|+||||||+.  +++.+.+.++|++++++|+.|+++++++++|+|.++         ||+.+..+.++...|+++
T Consensus       389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~s  468 (582)
T PRK05855        389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRSLPAYATS  468 (582)
T ss_pred             hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCCCCcHHHHH
Confidence            999999999999985  456788999999999999999999999999999863         566667777889999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHH-------HHHHHHH-HHHHHHhccccccccccccc
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK-------LWKLSEE-MIQSVVSTWLEETTERGEVV  327 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~r~g~p~dia~~v~  327 (328)
                      |++++ +++.       .+..+++.+.|+...++......       .++.... .......+..+|||+|..++
T Consensus       469 Kaa~~-~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~  542 (582)
T PRK05855        469 KAAVL-MLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRADKLYQRRGYGPEKVAKAIV  542 (582)
T ss_pred             HHHHH-HHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhhhhccccCCCHHHHHHHHH
Confidence            99998 6653       23456666777766654221110       0111111 11112345568999998765

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1e-25  Score=206.53  Aligned_cols=158  Identities=37%  Similarity=0.472  Sum_probs=134.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+++||++|||||++|||+++|+.|+++|++|++++|+.++.++..+++....++.++.++.+|++|.++++++++++.+
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   91 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA   91 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999999888877777776554456788999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceec-------------c
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQ-------------Q  257 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~-------------~  257 (328)
                      .++++|+||||||+..+....+.++++.+|++|+.|++.+++.++|.|++.        ||..+..             +
T Consensus        92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~  171 (306)
T PRK06197         92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWERR  171 (306)
T ss_pred             hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCcccC
Confidence            999999999999987555667888999999999999999999999999864        3332111             1


Q ss_pred             cccchhhhccCccccCCCCc
Q psy4246         258 GAATSIYCATSLDLSLPVSG  277 (328)
Q Consensus       258 ~~~~~~y~ask~al~~~~~g  277 (328)
                      ..+...|+++|++++ .++.
T Consensus       172 ~~~~~~Y~~SK~a~~-~~~~  190 (306)
T PRK06197        172 YNRVAAYGQSKLANL-LFTY  190 (306)
T ss_pred             CCcHHHHHHHHHHHH-HHHH
Confidence            234678999999998 6653

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.5e-25  Score=198.42  Aligned_cols=207  Identities=21%  Similarity=0.244  Sum_probs=156.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh-HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD-KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++++|+++||||++|||+++|+.|+++|++|+++.|+.+ ..++..+++...  +.++.++.+|+++.++++++++++.
T Consensus         1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   78 (245)
T PRK12937          1 MTLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAE   78 (245)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999999999999988877543 344555555443  5688999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +.++++|+||||||+.  .+..+.+.++|++++++|+.+++.++++++|+|.+.      +|..+..+.++...|+++|+
T Consensus        79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~  158 (245)
T PRK12937         79 TAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPLPGYGPYAASKA  158 (245)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCCCCCchhHHHHH
Confidence            9999999999999985  345677889999999999999999999999998764      44444556677889999999


Q ss_pred             cccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         270 DLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +++ .+...+       ..+++.+.|++..++...........+.+.+. +++|+++|+|++..++|
T Consensus       159 a~~-~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~  224 (245)
T PRK12937        159 AVE-GLVHVLANELRGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLAPLERLGTPEEIAAAVAF  224 (245)
T ss_pred             HHH-HHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            998 655332       23344455665554432111111122222222 37899999999988764

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.93  E-value=2.3e-25  Score=201.07  Aligned_cols=201  Identities=19%  Similarity=0.170  Sum_probs=154.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+|++|||||+||||++++++|+++|++|++++|+.+.+++....+     +.++.++.+|++|.++++++++.+.+.++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFG   76 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999999987766544332     34678899999999999999999999999


Q ss_pred             CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccc
Q psy4246         202 SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       202 ~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      ++|+||||||+.  +++.+.+.++|++++++|+.+++++++.++|.|++.        ||..+..+.+....|+++|+++
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~  156 (275)
T PRK08263         77 RLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFPMSGIYHASKWAL  156 (275)
T ss_pred             CCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCCCccHHHHHHHHH
Confidence            999999999985  456788999999999999999999999999999764        5556666777788999999998


Q ss_pred             cCCCCcc-------ccccCccCCCCcccCCHHH--------HHHHHHHHHHHHHH-HHhcc-cccccccccccC
Q psy4246         272 SLPVSGS-------YFNNCCRCPPSKAAQDEAL--------ATKLWKLSEEMIQS-VVSTW-LEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g~-------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~r~-g~p~dia~~v~F  328 (328)
                      + .+...       +..+++.+.|+...++...        ..........+... ..+++ ++|+|+|.++++
T Consensus       157 ~-~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~  229 (275)
T PRK08263        157 E-GMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQWSERSVDGDPEAAAEALLK  229 (275)
T ss_pred             H-HHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            7 55522       3345555566554443210        01111111122111 25678 999999987653

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.5e-25  Score=200.07  Aligned_cols=207  Identities=14%  Similarity=0.173  Sum_probs=152.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC----hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS----LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~----~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      ++|++|++|||||++|||.++|+.|+++|++|++++++    .+..++..+++...  +.++.++.+|++++++++++++
T Consensus         4 ~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~   81 (257)
T PRK12744          4 HSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA--GAKAVAFQADLTTAAAVEKLFD   81 (257)
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh--CCcEEEEecCcCCHHHHHHHHH
Confidence            35789999999999999999999999999997776543    23344444555433  4578899999999999999999


Q ss_pred             HHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccccce------ecccccchhhhc
Q psy4246         195 EYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA------RQQGAATSIYCA  266 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~~~------~~~~~~~~~y~a  266 (328)
                      ++.+.++++|+||||||+.  .+..+.+.++|++++++|+.++++++++++|+|.+.+++..      ....+....|++
T Consensus        82 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~~~~~~Y~~  161 (257)
T PRK12744         82 DAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFTPFYSAYAG  161 (257)
T ss_pred             HHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccCCCcccchh
Confidence            9999999999999999984  34567889999999999999999999999999976544311      123456788999


Q ss_pred             cCccccCCCCccc-------cccCccCCCCcccCCHHHHH---HHHHHHHHHH-HHH--HhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALAT---KLWKLSEEMI-QSV--VSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~--~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..+       ..+++...|++..++.....   ..+...+... ..+  ..|+++|+|||.++.|
T Consensus       162 sK~a~~-~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  235 (257)
T PRK12744        162 SKAPVE-HFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVAYHKTAAALSPFSKTGLTDIEDIVPFIRF  235 (257)
T ss_pred             hHHHHH-HHHHHHHHHhCcCceEEEEEecCccccchhccccccchhhcccccccccccccCCCCCHHHHHHHHHH
Confidence            999999 766433       34556666776655422110   0000001000 112  2389999999998875

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.93  E-value=2e-25  Score=199.24  Aligned_cols=202  Identities=18%  Similarity=0.139  Sum_probs=152.2

Q ss_pred             CCCCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCC-----------hhHHHHHHHHHHhhCCCCeEEEEEcccCCH
Q psy4246         120 DLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRS-----------LDKANDAISKILTEKPSAQCIAMELNLCRL  186 (328)
Q Consensus       120 ~l~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~-----------~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~  186 (328)
                      +|++|++|||||++  |||.++|++|+++|++|++++|+           .........++...  +.++.++.+|+++.
T Consensus         2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~   79 (256)
T PRK12748          2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESY--GVRCEHMEIDLSQP   79 (256)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence            57899999999994  99999999999999999999987           22222233334332  45789999999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceec
Q psy4246         187 KSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQ  256 (328)
Q Consensus       187 ~~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~  256 (328)
                      ++++++++++.+.++++|+||||||+.  .+..+.+.+++++++++|+.|++++++++++.|.+.        +|..+..
T Consensus        80 ~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~  159 (256)
T PRK12748         80 YAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG  159 (256)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC
Confidence            999999999999999999999999985  456678889999999999999999999999998654        4444455


Q ss_pred             ccccchhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHH-HHHHhcccccccccccccC
Q psy4246         257 QGAATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       257 ~~~~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      +.++...|+++|++++ .+...       +..+++.+.|++..+.... +....   ... ..+.+|+++|+|+|..++|
T Consensus       160 ~~~~~~~Y~~sK~a~~-~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~-~~~~~---~~~~~~~~~~~~~~~~~a~~~~~  234 (256)
T PRK12748        160 PMPDELAYAATKGAIE-AFTKSLAPELAEKGITVNAVNPGPTDTGWIT-EELKH---HLVPKFPQGRVGEPVDAARLIAF  234 (256)
T ss_pred             CCCCchHHHHHHHHHH-HHHHHHHHHHHHhCeEEEEEEeCcccCCCCC-hhHHH---hhhccCCCCCCcCHHHHHHHHHH
Confidence            5567789999999998 65422       2345566666665543211 11111   111 1125788999999988764

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.93  E-value=3.5e-25  Score=197.97  Aligned_cols=207  Identities=19%  Similarity=0.294  Sum_probs=156.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..++++|++|||||++|||.++|+.|+++|++|++++|+.++++....++...  +.++.++.||++|+++++++++++.
T Consensus         7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~   84 (259)
T PRK08213          7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEADIERLAEETL   84 (259)
T ss_pred             hhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999988777766666543  4578889999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH-HHhc--------cccceecccc----cch
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENA-LIKG--------AKLFARQQGA----ATS  262 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~~--------ss~~~~~~~~----~~~  262 (328)
                      +.++++|+||||||..  .+..+.+.+.|++++++|+.+++++++++.++ |.++        ||..+..+.+    +..
T Consensus        85 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~~~~~~  164 (259)
T PRK08213         85 ERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPEVMDTI  164 (259)
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCccccCcc
Confidence            9999999999999974  44567788999999999999999999999998 6543        3332222222    347


Q ss_pred             hhhccCccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         263 IYCATSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       263 ~y~ask~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      .|+++|++++ .+...+       ..+++.+.|+...++.... ......+.+... +.+++++|+|||..++|
T Consensus       165 ~Y~~sKa~~~-~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  236 (259)
T PRK08213        165 AYNTSKGAVI-NFTRALAAEWGPHGIRVNAIAPGFFPTKMTRG-TLERLGEDLLAHTPLGRLGDDEDLKGAALL  236 (259)
T ss_pred             hHHHHHHHHH-HHHHHHHHHhcccCEEEEEEecCcCCCcchhh-hhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            8999999998 655332       3445555666555442211 111112222222 26789999999987654

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.93  E-value=1.8e-25  Score=200.93  Aligned_cols=200  Identities=18%  Similarity=0.210  Sum_probs=143.7

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHH----HHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSV----KKFAEEYQK  198 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v----~~~~~~~~~  198 (328)
                      ++++||||++|||++++++|+++|++|++++| +.+.++.+.+++.... +.++.++.+|++|.+++    +++++.+.+
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARR-PNSAVTCQADLSNSATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhcc-CCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence            57999999999999999999999999999865 4566666666664332 34677899999999865    566666677


Q ss_pred             hcCCccEEEEccccCC--CCCCCCh-----------hHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cc
Q psy4246         199 KFRSLNILVLNAGVFG--LGFSHTE-----------DGFETTFQVNHLAHFYLTLQLENALIKG--------------AK  251 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~--~~~~~~~-----------~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss  251 (328)
                      .+|++|+||||||+..  +..+.+.           ++|.+++++|+.++++++++++|+|+..              +|
T Consensus        81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s  160 (267)
T TIGR02685        81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD  160 (267)
T ss_pred             ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence            8899999999999742  2323332           3589999999999999999999998642              12


Q ss_pred             cceecccccchhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHH-hcccccccc
Q psy4246         252 LFARQQGAATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVV-STWLEETTE  322 (328)
Q Consensus       252 ~~~~~~~~~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~r~g~p~di  322 (328)
                      ..+..+.++...|+++|++++ ++...       +..+++.+.|+...++..+.....   +...+ .++ +|+++|+|+
T Consensus       161 ~~~~~~~~~~~~Y~asK~a~~-~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v  236 (267)
T TIGR02685       161 AMTDQPLLGFTMYTMAKHALE-GLTRSAALELAPLQIRVNGVAPGLSLLPDAMPFEVQ---EDYRRKVPLGQREASAEQI  236 (267)
T ss_pred             hhccCCCcccchhHHHHHHHH-HHHHHHHHHHhhhCeEEEEEecCCccCccccchhHH---HHHHHhCCCCcCCCCHHHH
Confidence            233445567889999999998 66633       345667777776544322211111   11111 124 488999999


Q ss_pred             cccccC
Q psy4246         323 RGEVVF  328 (328)
Q Consensus       323 a~~v~F  328 (328)
                      |.+++|
T Consensus       237 a~~~~~  242 (267)
T TIGR02685       237 ADVVIF  242 (267)
T ss_pred             HHHHHH
Confidence            998875

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>TIGR02415 23BDH acetoin reductases

Probab=99.93  E-value=6.6e-25  Score=195.36  Aligned_cols=200  Identities=21%  Similarity=0.208  Sum_probs=156.9

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |+++||||++|||.+++++|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++.+.+.++++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i   78 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQA--GGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF   78 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999999999987777776666543  5578899999999999999999999999999


Q ss_pred             cEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCcccc
Q psy4246         204 NILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       204 d~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      |+||||||..  ++..+.+.++|++++++|+.+++++++.+++.|.+.         +|..+..+.+....|+++|++++
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  158 (254)
T TIGR02415        79 DVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPILSAYSSTKFAVR  158 (254)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCCCcchHHHHHHHH
Confidence            9999999985  456688999999999999999999999999998764         44455666778899999999998


Q ss_pred             CCCCccc-------cccCccCCCCcccCCHHHHHHHHH------------HHHHHHH-HHHhcccccccccccccC
Q psy4246         273 LPVSGSY-------FNNCCRCPPSKAAQDEALATKLWK------------LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                       .+...+       ..+++...|+...++.  .+....            ..+.... .+++|+.+|+|++.+++|
T Consensus       159 -~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  231 (254)
T TIGR02415       159 -GLTQTAAQELAPKGITVNAYCPGIVKTPM--WEEIDEETSEIAGKPIGEGFEEFSSEIALGRPSEPEDVAGLVSF  231 (254)
T ss_pred             -HHHHHHHHHhcccCeEEEEEecCcccChh--hhhhhhhhhhcccCchHHHHHHHHhhCCCCCCCCHHHHHHHHHh
Confidence             555321       2344445566554442  111111            0111111 236899999999998875

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.92  E-value=4.3e-25  Score=195.81  Aligned_cols=204  Identities=19%  Similarity=0.269  Sum_probs=154.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++++|+++||||++|||.++|++|+++|++|+++.+ +.+..++...++...  +.++.++.+|+++++++.++++++.+
T Consensus         3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (247)
T PRK12935          3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKE--GHDVYAVQADVSKVEDANRLVEEAVN   80 (247)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999987654 455555555555443  45789999999999999999999999


Q ss_pred             hcCCccEEEEccccCC--CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||...  ...+.+.+.+++++++|+.++++++++++|.|.+.        ||+.+..+.++...|+++|
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK  160 (247)
T PRK12935         81 HFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGFGQTNYSAAK  160 (247)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCCCCcchHHHH
Confidence            9999999999999853  34567889999999999999999999999999753        6666666677889999999


Q ss_pred             ccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHH-HHHHHHHH-HHhcccccccccccccC
Q psy4246         269 LDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWK-LSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .+...+       ..+++.+.|+...++.  .....+ ........ ..++++.|+|++.+++|
T Consensus       161 ~a~~-~~~~~l~~~~~~~~i~v~~v~pg~v~t~~--~~~~~~~~~~~~~~~~~~~~~~~~edva~~~~~  226 (247)
T PRK12935        161 AGML-GFTKSLALELAKTNVTVNAICPGFIDTEM--VAEVPEEVRQKIVAKIPKKRFGQADEIAKGVVY  226 (247)
T ss_pred             HHHH-HHHHHHHHHHHHcCcEEEEEEeCCCcChh--hhhccHHHHHHHHHhCCCCCCcCHHHHHHHHHH
Confidence            9987 655332       2344445555544332  111211 11122111 25789999999987754

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.92  E-value=4e-25  Score=221.73  Aligned_cols=209  Identities=22%  Similarity=0.260  Sum_probs=162.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ..|++|++|||||++|||+++|++|+++|++|++++|+.+.++....++.......++..+.+|++|.++++++++++.+
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~  489 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL  489 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999888777777766443344688899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .+|++|+||||||+.  .+..+.+.++|+.++++|+.+++++++.+++.|++.         ||..+..+.++...|+++
T Consensus       490 ~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~~~aY~aS  569 (676)
T TIGR02632       490 AYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKNASAYSAA  569 (676)
T ss_pred             hcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCCCHHHHHH
Confidence            999999999999985  456678899999999999999999999999999764         444556667788999999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHH------------HHHHH-HHH-HHHhcccccccccccc
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW------------KLSEE-MIQ-SVVSTWLEETTERGEV  326 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~-~~~~r~g~p~dia~~v  326 (328)
                      |++++ .+...       +..+++.+.|+...+...+....|            ...++ ... .+++|+.+|+|||+++
T Consensus       570 KaA~~-~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~r~v~peDVA~av  648 (676)
T TIGR02632       570 KAAEA-HLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHYAKRTLLKRHIFPADIAEAV  648 (676)
T ss_pred             HHHHH-HHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHHHhcCCcCCCcCHHHHHHHH
Confidence            99998 66532       345556666654432211110000            00011 111 2378999999999988


Q ss_pred             cC
Q psy4246         327 VF  328 (328)
Q Consensus       327 ~F  328 (328)
                      +|
T Consensus       649 ~~  650 (676)
T TIGR02632       649 FF  650 (676)
T ss_pred             HH
Confidence            75

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.92  E-value=4.2e-25  Score=195.98  Aligned_cols=207  Identities=19%  Similarity=0.182  Sum_probs=159.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++++|+++||||++|||.++|+.|+++|++|++++|+.++++....++...  +.++.++.+|++|.++++++++++.+
T Consensus         3 ~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   80 (250)
T PRK12939          3 SNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA--GGRAHAIAADLADPASVQRFFDAAAA   80 (250)
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999988887777776544  45789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||..  .+..+.+.++++.++++|+.+++.+++.+.|.|.+.        ||..+..+.+....|+++|
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sK  160 (250)
T PRK12939         81 ALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAPKLGAYVASK  160 (250)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCCCcchHHHHH
Confidence            999999999999985  345677889999999999999999999999999873        5555556666778899999


Q ss_pred             ccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .+...+       ..+++...|+...++...........+.... .+..+++.|+|+|.+++|
T Consensus       161 ~~~~-~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  227 (250)
T PRK12939        161 GAVI-GMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYLKGRALERLQVPDDVAGAVLF  227 (250)
T ss_pred             HHHH-HHHHHHHHHHhhhCEEEEEEEECCCCCccccccCChHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            9998 655322       2333444555544442211000011111111 236789999999988764

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.92  E-value=4.8e-25  Score=195.81  Aligned_cols=205  Identities=18%  Similarity=0.178  Sum_probs=155.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEE-eeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVIL-ACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~-~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      |++|++|||||++|||+++++.|+++|++|++ ..|+.++.+++.+++...  +.++.++.+|++|+++++++++++.+.
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEAL--GRKALAVKANVGDVEKIKEMFAQIDEE   79 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999876 578887777777776554  567889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ++++|+||||||..  .+..+.+.++|+.++++|+.++++++++++++|.++        ||+.+..+.+....|+++|+
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~y~~sK~  159 (250)
T PRK08063         80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLENYTTVGVSKA  159 (250)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCccHHHHHHH
Confidence            99999999999974  566788899999999999999999999999999874        45444555567789999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .+...       +..+++.+.|+...++....-.. ....+.... .+.+++.+++|+|..++|
T Consensus       160 a~~-~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  226 (250)
T PRK08063        160 ALE-ALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKTPAGRMVEPEDVANAVLF  226 (250)
T ss_pred             HHH-HHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            998 66532       22344555566554433211000 011111111 124678889999887643

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.92  E-value=5.8e-25  Score=195.17  Aligned_cols=205  Identities=22%  Similarity=0.233  Sum_probs=157.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++++|++|||||++|||.++++.|+++|++|++++|+.++.++....+..   +.++.++.+|++|.++++++++++.+.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALER   78 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999998877776666543   457889999999999999999999999


Q ss_pred             cCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++++|+||||||..   .++.+.+.++|++++++|+.|++.+++.++++|.+.        ||+.+..+.++...|+++|
T Consensus        79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sk  158 (251)
T PRK07231         79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPGLGWYNASK  158 (251)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCCCchHHHHHH
Confidence            99999999999974   345678899999999999999999999999999755        5556666777888999999


Q ss_pred             ccccCCCCccc-------cccCccCCCCcccCCHHHHHH---HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         269 LDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATK---LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +++. .+...+       ..+++...|+...++......   ..+..+...+. +++++..|+|+|.+++|
T Consensus       159 ~~~~-~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  228 (251)
T PRK07231        159 GAVI-TLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATIPLGRLGTPEDIANAALF  228 (251)
T ss_pred             HHHH-HHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            9987 555322       233444555555443211100   00111112111 26788999999987653

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.92  E-value=3.7e-25  Score=195.72  Aligned_cols=202  Identities=23%  Similarity=0.307  Sum_probs=154.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|++|||||++|||+++++.|+++|+.|++.+|+.+++++....+     +.++.++.+|+++.++++++++++.+
T Consensus         2 ~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (245)
T PRK12936          2 FDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKAEA   76 (245)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999887766554433     34688899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||..  .+..+.+.++|++++++|+.+++++++++.+.|.+.        ||..+..+.+....|+++|
T Consensus        77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sk  156 (245)
T PRK12936         77 DLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPGQANYCASK  156 (245)
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCCCCcchHHHH
Confidence            999999999999985  345677889999999999999999999999987654        5555566667788999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHH-HHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSE-EMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++. ++...       +..+++.+.|+...++.  ......... .... .+++|+++|+|++.+++|
T Consensus       157 ~a~~-~~~~~la~~~~~~~i~v~~i~pg~~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~  222 (245)
T PRK12936        157 AGMI-GFSKSLAQEIATRNVTVNCVAPGFIESAM--TGKLNDKQKEAIMGAIPMKRMGTGAEVASAVAY  222 (245)
T ss_pred             HHHH-HHHHHHHHHhhHhCeEEEEEEECcCcCch--hcccChHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            9887 55532       22344445555444332  221111111 1111 236789999999988754

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.92  E-value=4.4e-25  Score=199.15  Aligned_cols=209  Identities=18%  Similarity=0.150  Sum_probs=158.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||.++++.|+++|++|++++|+.+..+....++.....+.++.++.+|++|+++++++++++.+
T Consensus         3 ~~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   82 (276)
T PRK05875          3 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA   82 (276)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999887777666665432235788999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      .++++|+||||||..   ++..+.+.++|..++++|+.+++.+++++++.|.+.        ||..+..+.+....|+++
T Consensus        83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~s  162 (276)
T PRK05875         83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHRWFGAYGVT  162 (276)
T ss_pred             HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCCCCcchHHH
Confidence            999999999999974   345678889999999999999999999999999763        444455555677899999


Q ss_pred             CccccCCCCccc-------cccCccCCCCcccCCHHHHH-HHHHHHHHHH-HHHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALAT-KLWKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .+...+       ..+++.+.|+...++..... .......... ..++.|++.|+|++.+++|
T Consensus       163 K~a~~-~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  231 (276)
T PRK05875        163 KSAVD-HLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACTPLPRVGEVEDVANLAMF  231 (276)
T ss_pred             HHHHH-HHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcCCCCCCCcCHHHHHHHHHH
Confidence            99998 666433       23445555654443321110 0001111111 1236789999999988765

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.92  E-value=7.2e-25  Score=194.78  Aligned_cols=206  Identities=20%  Similarity=0.227  Sum_probs=155.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |+|++|++|||||++|||.++|++|+++|++|++++|+.+...+...++.   .+.++..+.+|++|+++++++++++.+
T Consensus         1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~   77 (252)
T PRK06138          1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVAA   77 (252)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999887776666554   256789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      +++++|+||||||..  .+..+.+.+++++++++|+.+++.+++.+++.|++.        ||+.+..+.++...|+++|
T Consensus        78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK  157 (252)
T PRK06138         78 RWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRGRAAYVASK  157 (252)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCCccHHHHHH
Confidence            999999999999985  345677899999999999999999999999999764        5555556667788999999


Q ss_pred             ccccCCCCccc-------cccCccCCCCcccCCHHHHHHH----HHHHHHHH--HHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKL----WKLSEEMI--QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~r~g~p~dia~~v~F  328 (328)
                      +++. .+...+       ..++....|+...++.......    .+......  ..+.++++.|+|+|..++|
T Consensus       158 ~a~~-~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~  229 (252)
T PRK06138        158 GAIA-SLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRARHPMNRFGTAEEVAQAALF  229 (252)
T ss_pred             HHHH-HHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9988 665433       2333334444443332111000    01111111  1124578889999877653

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.92  E-value=6.3e-25  Score=202.27  Aligned_cols=171  Identities=20%  Similarity=0.180  Sum_probs=136.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|++++||||++|||+++|++|+++|++|++++|+.+++++..+++...+++.++..+.+|+++  ++.+.++++.+.++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~l~~~~~  129 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG--DIDEGVKRIKETIE  129 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC--CcHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999888888766555688889999985  23344444444444


Q ss_pred             --CccEEEEccccCC----CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceec-c-cccchhhh
Q psy4246         202 --SLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQ-Q-GAATSIYC  265 (328)
Q Consensus       202 --~id~lvnnAg~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~-~-~~~~~~y~  265 (328)
                        ++|+||||||+..    ++.+.+.+++++++++|+.|++.+++.++|.|.++        ||..+.. + .+....|+
T Consensus       130 ~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~~p~~~~Y~  209 (320)
T PLN02780        130 GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPSDPLYAVYA  209 (320)
T ss_pred             CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCccchHHH
Confidence              4669999999852    35678999999999999999999999999999765        5555543 3 46789999


Q ss_pred             ccCccccCCCCcc-------ccccCccCCCCcccCCH
Q psy4246         266 ATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDE  295 (328)
Q Consensus       266 ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~  295 (328)
                      +||+++. +++..       +..+++.+.|++..++.
T Consensus       210 aSKaal~-~~~~~L~~El~~~gI~V~~v~PG~v~T~~  245 (320)
T PLN02780        210 ATKAYID-QFSRCLYVEYKKSGIDVQCQVPLYVATKM  245 (320)
T ss_pred             HHHHHHH-HHHHHHHHHHhccCeEEEEEeeCceecCc
Confidence            9999998 66632       34556666777666653

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.1e-24  Score=196.18  Aligned_cols=150  Identities=22%  Similarity=0.299  Sum_probs=132.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||+||||+++|+.|+++|++|++++|+.+.+++...++.      ++.++.||++|+++++++++.+.+.
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~   75 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG------LVVGGPLDVTDPASFAAFLDAVEAD   75 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cceEEEccCCCHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999999887766555442      4678999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ++++|+||||||+.  .++.+.+.+++++++++|+.|++.+++.++|.|.+.        ||+.+..+.++...|+++|+
T Consensus        76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  155 (273)
T PRK07825         76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVPGMATYCASKH  155 (273)
T ss_pred             cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCCCCcchHHHHH
Confidence            99999999999985  456678899999999999999999999999999875        66677777888999999999


Q ss_pred             cccCCCC
Q psy4246         270 DLSLPVS  276 (328)
Q Consensus       270 al~~~~~  276 (328)
                      ++. ++.
T Consensus       156 a~~-~~~  161 (273)
T PRK07825        156 AVV-GFT  161 (273)
T ss_pred             HHH-HHH
Confidence            887 443

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.92  E-value=5.7e-25  Score=183.36  Aligned_cols=148  Identities=32%  Similarity=0.461  Sum_probs=132.1

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC--hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGC-RVILACRS--LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|||||++|||+++|++|+++|+ +|++++|+  .+..+++..++...  +.++.+++||++++++++++++++.+.+
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            7899999999999999999999976 78888998  67777777777754  5799999999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCcccc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +++|+||||||+.  ++..+++.++|+++|++|+.+++++.++++|  ...      +|+.+..+.++...|+++|+++.
T Consensus        79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~~g~iv~~sS~~~~~~~~~~~~Y~askaal~  156 (167)
T PF00106_consen   79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP--QGGGKIVNISSIAGVRGSPGMSAYSASKAALR  156 (167)
T ss_dssp             SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH--HTTEEEEEEEEGGGTSSSTTBHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccchhhhhccccccceeeeeeehhee--ccccceEEecchhhccCCCCChhHHHHHHHHH
Confidence            9999999999986  4456778999999999999999999999999  333      77788889999999999999998


Q ss_pred             CCCC
Q psy4246         273 LPVS  276 (328)
Q Consensus       273 ~~~~  276 (328)
                       +++
T Consensus       157 -~~~  159 (167)
T PF00106_consen  157 -GLT  159 (167)
T ss_dssp             -HHH
T ss_pred             -HHH
Confidence             554

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.92  E-value=7.3e-25  Score=197.45  Aligned_cols=203  Identities=15%  Similarity=0.150  Sum_probs=153.5

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |+++||||++|||+++|+.|+++|++|++++|+.+.+++...++.... +..+.++.+|++++++++++++++.+.++++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG-GTVPEHRALDISDYDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            579999999999999999999999999999999888777777765442 2345668999999999999999999999999


Q ss_pred             cEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCcccc
Q psy4246         204 NILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       204 d~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      |+||||||..  .+..+.+.++|+.++++|+.|++.++++++|.|.+.         ||..+..+.+....|+++|+++.
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~  159 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKFGLR  159 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCCCCcchHHHHHHHH
Confidence            9999999974  456788999999999999999999999999999653         44445556677889999999988


Q ss_pred             CCCCc-------cccccCccCCCCcccCCHHHHHH------HHHHHHHHHHHHHhcccccccccccccC
Q psy4246         273 LPVSG-------SYFNNCCRCPPSKAAQDEALATK------LWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                       ++..       .+..+++...|+...++......      ..+..+.......+|..+|+|+|..++|
T Consensus       160 -~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~  227 (272)
T PRK07832        160 -GLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDRFRGHAVTPEKAAEKILA  227 (272)
T ss_pred             -HHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHH
Confidence             5552       23344555556655443211000      0001111222235678999999988764

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1e-24  Score=194.86  Aligned_cols=203  Identities=18%  Similarity=0.193  Sum_probs=151.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ..+|++|||||++|||+++++.|+++|++|+++++ +.+.++.+..++...  +.++.++.+|++|.++++++++++.+.
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999988766 445555555555443  457889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--ccc------ceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKL------FARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--ss~------~~~~~~~~~~~y~ask~  269 (328)
                      ++++|+||||||..  .+..+.+.++|++++++|+.|+++++++++++|.+.  +.+      .+..+.+....|+++|+
T Consensus        85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~p~~~~Y~~sK~  164 (258)
T PRK09134         85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLNPDFLSYTLSKA  164 (258)
T ss_pred             cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCCCCchHHHHHHH
Confidence            99999999999985  345678899999999999999999999999999764  222      22333455678999999


Q ss_pred             cccCCCCcccc------ccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         270 DLSLPVSGSYF------NNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .+...+.      .+++.+.|++..+........+  ........+++..+|+|+|.+++|
T Consensus       165 a~~-~~~~~la~~~~~~i~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~d~a~~~~~  226 (258)
T PRK09134        165 ALW-TATRTLAQALAPRIRVNAIGPGPTLPSGRQSPEDF--ARQHAATPLGRGSTPEEIAAAVRY  226 (258)
T ss_pred             HHH-HHHHHHHHHhcCCcEEEEeecccccCCcccChHHH--HHHHhcCCCCCCcCHHHHHHHHHH
Confidence            988 6553321      4455566665544321111111  111111236788899999987754

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.92  E-value=8.4e-25  Score=194.00  Aligned_cols=203  Identities=16%  Similarity=0.137  Sum_probs=151.0

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +|++|||||++|||.++|++|+++|++|+++++ +.+..+....++...  +.++.++.||++|.++++++++++.+.++
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQ--GGEALAVAADVADEADVLRLFEAVDRELG   79 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhC--CCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999988874 445555555555433  45688899999999999999999999999


Q ss_pred             CccEEEEccccCC---CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----------cccceeccccc-chhhhc
Q psy4246         202 SLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----------AKLFARQQGAA-TSIYCA  266 (328)
Q Consensus       202 ~id~lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----------ss~~~~~~~~~-~~~y~a  266 (328)
                      ++|+||||||...   +..+.+.++|++++++|+.+++++++.+++.|.++           ||..+..+.++ ...|++
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~Y~~  159 (248)
T PRK06123         80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGEYIDYAA  159 (248)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCCCccchHH
Confidence            9999999999853   35577889999999999999999999999998643           33334444444 357999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .+...       +..+++.+.|+...++................ .+++|+++|+|++.+++|
T Consensus       160 sKaa~~-~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~a~~~~~  228 (248)
T PRK06123        160 SKGAID-TMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPMGRGGTAEEVARAILW  228 (248)
T ss_pred             HHHHHH-HHHHHHHHHhcccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999998 65532       34566666677665543211101111111111 247888999999988764

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.9e-24  Score=195.42  Aligned_cols=206  Identities=19%  Similarity=0.187  Sum_probs=155.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|++|||||+||||.++++.|+++|++|++++|+.+..++...++.....+.++.++.+|++|+++++. ++++.+.+
T Consensus         1 ~~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~   79 (280)
T PRK06914          1 MNKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI   79 (280)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence            46789999999999999999999999999999999988777766665544334578999999999999999 99999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      +++|++|||||..  +...+.+.+++++++++|+.|++.+++.++|+|++.        ||..+..+.++...|+++|++
T Consensus        80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~~  159 (280)
T PRK06914         80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFPGLSPYVSSKYA  159 (280)
T ss_pred             CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCCCCchhHHhHHH
Confidence            9999999999985  345677889999999999999999999999999754        444556666778899999999


Q ss_pred             ccCCCCccc-------cccCccCCCCcccCCHHHH------------HHHHHHHHHHH---HHHHhcccccccccccccC
Q psy4246         271 LSLPVSGSY-------FNNCCRCPPSKAAQDEALA------------TKLWKLSEEMI---QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~~-------~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~---~~~~~r~g~p~dia~~v~F  328 (328)
                      ++ .+...+       ..+++...|+...++....            .........+.   ....+++++|+|+|.+++|
T Consensus       160 ~~-~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  238 (280)
T PRK06914        160 LE-GFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHINSGSDTFGNPIDVANLIVE  238 (280)
T ss_pred             HH-HHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHHhhhhhccCCHHHHHHHHHH
Confidence            88 665432       3445555555444431100            00011111111   1235688999999987753

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.92  E-value=1.1e-24  Score=193.67  Aligned_cols=197  Identities=21%  Similarity=0.302  Sum_probs=153.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|++|++|||||++|||.+++++|+++|++|++++|+.         +...  +.++.++.+|+++.++++++++++.
T Consensus         3 ~~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   71 (252)
T PRK08220          3 AMDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQE--DYPFATFVLDVSDAAAVAQVCQRLL   71 (252)
T ss_pred             ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhhc--CCceEEEEecCCCHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999985         1111  4578899999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.++++|+||||||..  ++..+.+.+++++++++|+.++++++++++++|.+.        ||..+..+..+...|+++
T Consensus        72 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~s  151 (252)
T PRK08220         72 AETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRIGMAAYGAS  151 (252)
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCCCchhHHH
Confidence            9999999999999985  456678899999999999999999999999999764        333444555677899999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH-----------HHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK-----------LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .+...       +..+++...|+...++...  .++.           ..+.... .+++|+++|+|+|.+++|
T Consensus       152 K~a~~-~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  228 (252)
T PRK08220        152 KAALT-SLAKCVGLELAPYGVRCNVVSPGSTDTDMQR--TLWVDEDGEQQVIAGFPEQFKLGIPLGKIARPQEIANAVLF  228 (252)
T ss_pred             HHHHH-HHHHHHHHHhhHhCeEEEEEecCcCcchhhh--hhccchhhhhhhhhhHHHHHhhcCCCcccCCHHHHHHHHHH
Confidence            99998 66632       3445566666665554321  1111           0111111 137899999999998865

>KOG1209|consensus

Probab=99.92  E-value=6.5e-25  Score=182.17  Aligned_cols=147  Identities=23%  Similarity=0.289  Sum_probs=130.8

Q ss_pred             CCceEEEcCCC-CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH-h
Q psy4246         122 SNYNAIVTGAN-TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK-K  199 (328)
Q Consensus       122 ~~k~~lITGas-~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~-~  199 (328)
                      +.|.+||||++ ||||.++|++|++.|+.|+.+.|..+....+..+.       .+....+|++++++|..+..++.+ .
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-------gl~~~kLDV~~~~~V~~v~~evr~~~   78 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-------GLKPYKLDVSKPEEVVTVSGEVRANP   78 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-------CCeeEEeccCChHHHHHHHHHHhhCC
Confidence            45789999987 79999999999999999999999988876654332       477899999999999999999988 7


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCcc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      +|+||+|+||||..  .|..+.+.+..+++|++|++|++++++++...+.+.       +|+.+..+.+..++|+|||+|
T Consensus        79 ~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf~~iYsAsKAA  158 (289)
T KOG1209|consen   79 DGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPFGSIYSASKAA  158 (289)
T ss_pred             CCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccchhhhhhHHHHH
Confidence            89999999999984  778899999999999999999999999999776665       788889999999999999999


Q ss_pred             ccCCCC
Q psy4246         271 LSLPVS  276 (328)
Q Consensus       271 l~~~~~  276 (328)
                      +. .++
T Consensus       159 ih-ay~  163 (289)
T KOG1209|consen  159 IH-AYA  163 (289)
T ss_pred             HH-Hhh
Confidence            98 555

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.1e-24  Score=193.59  Aligned_cols=204  Identities=21%  Similarity=0.253  Sum_probs=151.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|++|||||++|||.+++++|+++|++|++++|+.+..+...+++...  +.++..+.+|+++.++++++++++.+
T Consensus         2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (250)
T PRK07774          2 GRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--GGTAIAVQVDVSDPDSAKAMADATVS   79 (250)
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999987776666666543  34678899999999999999999999


Q ss_pred             hcCCccEEEEccccCC-----CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhh
Q psy4246         199 KFRSLNILVLNAGVFG-----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYC  265 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~-----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~  265 (328)
                      .++++|+||||||+..     ++.+.+.+++++++++|+.++++++++++|+|.+.        ||..+   ..+...|+
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~---~~~~~~Y~  156 (250)
T PRK07774         80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAA---WLYSNFYG  156 (250)
T ss_pred             HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccc---cCCccccH
Confidence            9999999999999852     34567889999999999999999999999998763        33222   23457899


Q ss_pred             ccCccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .+...+       ...+....|+...++...............+. +..++++|+|+++.++|
T Consensus       157 ~sK~a~~-~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~  226 (250)
T PRK07774        157 LAKVGLN-GLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPLSRMGTPEDLVGMCLF  226 (250)
T ss_pred             HHHHHHH-HHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999998 655332       12334444554444432110001111112111 24668889998887653

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.92  E-value=3.2e-24  Score=195.41  Aligned_cols=175  Identities=23%  Similarity=0.236  Sum_probs=139.3

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      +..++++|++|||||+||||+++|+.|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.+++.++++.+
T Consensus        34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~  111 (293)
T PRK05866         34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--GGDAMAVPCDLSDLDAVDALVADV  111 (293)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999998888877777543  457889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCC--CCCCC--ChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceec-ccccchh
Q psy4246         197 QKKFRSLNILVLNAGVFG--LGFSH--TEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQ-QGAATSI  263 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~--~~~~~--~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~-~~~~~~~  263 (328)
                      .+.+|++|+||||||+..  +..+.  +.++++.++++|+.|++.++++++|+|.+.        ||..+.. ..++...
T Consensus       112 ~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~p~~~~  191 (293)
T PRK05866        112 EKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEASPLFSV  191 (293)
T ss_pred             HHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCCcch
Confidence            999999999999999853  22222  457889999999999999999999999765        3322222 2456788


Q ss_pred             hhccCccccCCCCcc-------ccccCccCCCCcccCC
Q psy4246         264 YCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQD  294 (328)
Q Consensus       264 y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~  294 (328)
                      |+++|+++. ++...       +..+++.+.|+...++
T Consensus       192 Y~asKaal~-~l~~~la~e~~~~gI~v~~v~pg~v~T~  228 (293)
T PRK05866        192 YNASKAALS-AVSRVIETEWGDRGVHSTTLYYPLVATP  228 (293)
T ss_pred             HHHHHHHHH-HHHHHHHHHhcccCcEEEEEEcCcccCc
Confidence            999999987 65522       2344455555554443

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.1e-24  Score=195.14  Aligned_cols=200  Identities=20%  Similarity=0.218  Sum_probs=153.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|++|||||++|||.+++++|+++|++|++++|+.+.+++...++ ..  +.++.++.+|++|.++++.+++.+.+
T Consensus         1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~   77 (263)
T PRK09072          1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARARE   77 (263)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999999988887776666 22  45788999999999999999999876


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                       ++++|+||||||..  .+..+.+.+++++++++|+.|++++++.++|+|.+.        +|..+..+.++...|+++|
T Consensus        78 -~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK  156 (263)
T PRK09072         78 -MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYPGYASYCASK  156 (263)
T ss_pred             -cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCCCccHHHHHH
Confidence             89999999999985  445678899999999999999999999999999766        4445566677888999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +++. .+...       +..+++...|+...+...  .....   ........++.+|+|+|..++|
T Consensus       157 ~a~~-~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~--~~~~~---~~~~~~~~~~~~~~~va~~i~~  217 (263)
T PRK09072        157 FALR-GFSEALRRELADTGVRVLYLAPRATRTAMN--SEAVQ---ALNRALGNAMDDPEDVAAAVLQ  217 (263)
T ss_pred             HHHH-HHHHHHHHHhcccCcEEEEEecCcccccch--hhhcc---cccccccCCCCCHHHHHHHHHH
Confidence            9987 54422       223344445555544321  11111   1111112467788888877653

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.92  E-value=1.8e-24  Score=192.07  Aligned_cols=203  Identities=19%  Similarity=0.209  Sum_probs=156.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|++|||||++|||.+++++|+++|++|++++|+.+...++..++...  +.++.++.+|++|.++++++++.+.+.+
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--GGNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999988777776666543  4578899999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      +++|+||||||..  .+..+.+.++|++++++|+.+++++++.+++.|.+.        +|..+..+.++...|+++|++
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~~~~Y~~sK~a  158 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSGEAVYAACKGG  158 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCCCCchHHHHHHH
Confidence            9999999999974  445677889999999999999999999999999764        444555566778899999999


Q ss_pred             ccCCCCccc-------cccCccCCCCcccCCHHHHHHHHH-------HHHHHHHH-HHhcccccccccccccC
Q psy4246         271 LSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWK-------LSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++ .+...+       ..+++...|+...++..  ..+..       ........ +.+++++|+|+|.+++|
T Consensus       159 ~~-~~~~~la~~~~~~~i~v~~v~pg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  228 (250)
T TIGR03206       159 LV-AFSKTMAREHARHGITVNVVCPGPTDTALL--DDICGGAENPEKLREAFTRAIPLGRLGQPDDLPGAILF  228 (250)
T ss_pred             HH-HHHHHHHHHHhHhCcEEEEEecCcccchhH--HhhhhccCChHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence            87 655332       23344455555444321  11110       11111111 26789999999988764

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06194 hypothetical protein; Provisional

Probab=99.92  E-value=2.7e-24  Score=195.03  Aligned_cols=155  Identities=21%  Similarity=0.314  Sum_probs=134.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|++|.++++++++.+.+.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~   80 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALER   80 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999988777777776543  457889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cccceecccccchh
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------------AKLFARQQGAATSI  263 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss~~~~~~~~~~~~  263 (328)
                      ++++|+||||||..  ++..+.+.++|+.++++|+.|+++++++++|.|.+.              ||+.+..+.++...
T Consensus        81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~  160 (287)
T PRK06194         81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAMGI  160 (287)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCcc
Confidence            99999999999985  345678899999999999999999999999998754              34445555677889


Q ss_pred             hhccCccccCCCCc
Q psy4246         264 YCATSLDLSLPVSG  277 (328)
Q Consensus       264 y~ask~al~~~~~g  277 (328)
                      |+++|++++ .+..
T Consensus       161 Y~~sK~a~~-~~~~  173 (287)
T PRK06194        161 YNVSKHAVV-SLTE  173 (287)
T ss_pred             hHHHHHHHH-HHHH
Confidence            999999988 6553

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.92  E-value=2.9e-24  Score=192.03  Aligned_cols=206  Identities=20%  Similarity=0.223  Sum_probs=157.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++++|++|||||++|||.++++.|+++|++|++++|+++..++..+++...  +.++.++.+|++|.++++++++++.+
T Consensus         3 ~~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   80 (262)
T PRK13394          3 SNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA--GGKAIGVAMDVTNEDAVNAGIDKVAE   80 (262)
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999998887777777543  55788899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH-Hhc--------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL-IKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~-~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      .++++|+||||||..  .+..+.+.++++.++++|+.+++.+++.+++.| ++.        ||+.+..+.+....|+++
T Consensus        81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~s  160 (262)
T PRK13394         81 RFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTA  160 (262)
T ss_pred             HcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCCCCCcccHHH
Confidence            999999999999985  344567889999999999999999999999999 443        555555666677899999


Q ss_pred             CccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHH-------HHHHHHH------HHhccccccccccccc
Q psy4246         268 SLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKL-------SEEMIQS------VVSTWLEETTERGEVV  327 (328)
Q Consensus       268 k~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~------~~~r~g~p~dia~~v~  327 (328)
                      |+++. .+...+       ..+++...|+...++.. ...+...       .++....      ..+++..|+|++.+++
T Consensus       161 k~a~~-~~~~~la~~~~~~~i~v~~v~pg~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~  238 (262)
T PRK13394        161 KHGLL-GLARVLAKEGAKHNVRSHVVCPGFVRTPLV-DKQIPEQAKELGISEEEVVKKVMLGKTVDGVFTTVEDVAQTVL  238 (262)
T ss_pred             HHHHH-HHHHHHHHHhhhcCeEEEEEeeCcccchhh-hhhhHhhhhccCCChHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence            99988 655332       23444455554443321 1111110       0111111      1467999999998765


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       239 ~  239 (262)
T PRK13394        239 F  239 (262)
T ss_pred             H
Confidence            4

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.5e-24  Score=195.07  Aligned_cols=195  Identities=21%  Similarity=0.200  Sum_probs=148.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++|+++||||+||||++++++|+++|++|++++|+.+..+.          ..++.++.+|++|+++++++++.+.+.+|
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g   72 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVIARAG   72 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence            56899999999999999999999999999999998654321          23577899999999999999999999999


Q ss_pred             CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccc
Q psy4246         202 SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       202 ~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      ++|+||||||+.  ++..+.+.+++++++++|+.|++.+++.++|+|++.        ||+.+..+.+....|+++|+++
T Consensus        73 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~  152 (270)
T PRK06179         73 RIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAPYMALYAASKHAV  152 (270)
T ss_pred             CCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCCCCccHHHHHHHHH
Confidence            999999999985  456678899999999999999999999999999875        5556666777888999999998


Q ss_pred             cCCCCcc-------ccccCccCCCCcccCCHHH-----------HHHHHHHHHHHHHHHHhccccccccccccc
Q psy4246         272 SLPVSGS-------YFNNCCRCPPSKAAQDEAL-----------ATKLWKLSEEMIQSVVSTWLEETTERGEVV  327 (328)
Q Consensus       272 ~~~~~g~-------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~r~g~p~dia~~v~  327 (328)
                      + .+...       +..+++.+.|+...++...           ...............+.+..+|+++|..++
T Consensus       153 ~-~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~  225 (270)
T PRK06179        153 E-GYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVAKAVKKADAPEVVADTVV  225 (270)
T ss_pred             H-HHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence            8 65432       2344444555544333110           000011111122223567788888887765

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.92  E-value=7.8e-25  Score=193.22  Aligned_cols=198  Identities=15%  Similarity=0.153  Sum_probs=150.4

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +|||||++|||.++|+.|+++|++|++++|. .+..+....++...  +.++.++.+|++|.++++++++++.+.++++|
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~   78 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQ--GGNARLLQFDVADRVACRTLLEADIAEHGAYY   78 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            5899999999999999999999999998865 45555666666544  45789999999999999999999999999999


Q ss_pred             EEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHH-HHHHhc--------cccceecccccchhhhccCccccC
Q psy4246         205 ILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLE-NALIKG--------AKLFARQQGAATSIYCATSLDLSL  273 (328)
Q Consensus       205 ~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~-~~~~~~--------ss~~~~~~~~~~~~y~ask~al~~  273 (328)
                      ++|||||+.  .++.+.+.++|+.++++|+.+++++++.++ |.+.+.        ||..+..+.++...|+++|+++. 
T Consensus        79 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~a~~-  157 (239)
T TIGR01831        79 GVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRGQVNYSAAKAGLI-  157 (239)
T ss_pred             EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCCCCcchHHHHHHHH-
Confidence            999999985  344577889999999999999999999875 444432        55566677778899999999987 


Q ss_pred             CCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         274 PVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       274 ~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      .++..       +..+++...|+...+...  ....+..++..+ .+++|+++|+|+|..++|
T Consensus       158 ~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  218 (239)
T TIGR01831       158 GATKALAVELAKRKITVNCIAPGLIDTEML--AEVEHDLDEALKTVPMNRMGQPAEVASLAGF  218 (239)
T ss_pred             HHHHHHHHHHhHhCeEEEEEEEccCccccc--hhhhHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            55522       234455555665554432  112221222222 237899999999998876

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK12742 oxidoreductase; Provisional

Probab=99.92  E-value=9.8e-25  Score=192.27  Aligned_cols=195  Identities=19%  Similarity=0.246  Sum_probs=144.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .|++|++|||||++|||+++|+.|+++|++|+++++ +.+..+++..++       .+.++.+|++|.+++.++++    
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~~~~~~~----   71 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-------GATAVQTDSADRDAVIDVVR----   71 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-------CCeEEecCCCCHHHHHHHHH----
Confidence            478999999999999999999999999999998876 444444332222       24578899999998877765    


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccce-ecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFA-RQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~-~~~~~~~~~y~ask~  269 (328)
                      .++++|+||||||..  .+..+.+.++|++++++|+.|++++++.++++|.+.      +|..+ ..+.++...|+++|+
T Consensus        72 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~~sKa  151 (237)
T PRK12742         72 KSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRMPVAGMAAYAASKS  151 (237)
T ss_pred             HhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccCCCCCCcchHHhHH
Confidence            358899999999985  445678899999999999999999999999999765      33333 234567889999999


Q ss_pred             cccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         270 DLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +++ .+..       .+..+++.+.|++..++....  .....+..... +++|+++|+|+|++++|
T Consensus       152 a~~-~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~--~~~~~~~~~~~~~~~~~~~p~~~a~~~~~  215 (237)
T PRK12742        152 ALQ-GMARGLARDFGPRGITINVVQPGPIDTDANPA--NGPMKDMMHSFMAIKRHGRPEEVAGMVAW  215 (237)
T ss_pred             HHH-HHHHHHHHHHhhhCeEEEEEecCcccCCcccc--ccHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            998 6553       234566667777666543211  00111111111 37899999999998875

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.2e-24  Score=194.13  Aligned_cols=199  Identities=17%  Similarity=0.224  Sum_probs=147.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|+||+++||||++|||.+++++|+++|++|++++|+....+....++     +  ..++.+|++++++++++++++.+.
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~--~~~~~~D~~~~~~~~~~~~~~~~~   76 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV-----G--GLFVPTDVTDEDAVNALFDTAAET   76 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc-----C--CcEEEeeCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999877665544433     1  257899999999999999999999


Q ss_pred             cCCccEEEEccccCC----CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceeccc-ccchhhhc
Q psy4246         200 FRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQG-AATSIYCA  266 (328)
Q Consensus       200 ~g~id~lvnnAg~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~-~~~~~y~a  266 (328)
                      ++++|+||||||...    ++.+.+.+.|++++++|+.|++++++.++|+|.+.        +|..+..+. .+...|++
T Consensus        77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~~~~~~Y~~  156 (255)
T PRK06057         77 YGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSATSQISYTA  156 (255)
T ss_pred             cCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCCCCCcchHH
Confidence            999999999999752    34567889999999999999999999999999764        333333433 35678999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH-----HHHHHHHHHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK-----LSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +|+++. .+..       .+..+++.+.|+...++..  ...+.     ..+.+...+++++++|+|+|.++.|
T Consensus       157 sKaal~-~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (255)
T PRK06057        157 SKGGVL-AMSRELGVQFARQGIRVNALCPGPVNTPLL--QELFAKDPERAARRLVHVPMGRFAEPEEIAAAVAF  227 (255)
T ss_pred             HHHHHH-HHHHHHHHHHHhhCcEEEEEeeCCcCCchh--hhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999887 5442       1234445555665544422  11111     1111112236789999999987654

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.92  E-value=1.7e-24  Score=192.43  Aligned_cols=199  Identities=16%  Similarity=0.199  Sum_probs=149.5

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      ++++||||+||||.++|+.|+++|++|++++|+.++++.+...+     +.++.++.+|++|.++++++++++.+.++++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i   75 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWRNI   75 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            36899999999999999999999999999999987766554443     3478889999999999999999999999999


Q ss_pred             cEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         204 NILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       204 d~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      |+||||||+.   .+..+.+.++|++++++|+.|++.+++.++|+|.+.        ||..+..+.++...|+++|++++
T Consensus        76 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~~  155 (248)
T PRK10538         76 DVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVR  155 (248)
T ss_pred             CEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCCCCCchhHHHHHHHH
Confidence            9999999974   345678899999999999999999999999999764        44455556667889999999998


Q ss_pred             CCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHH-HhcccccccccccccC
Q psy4246         273 LPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSV-VSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~g~p~dia~~v~F  328 (328)
                       .+...       +..+++.+.|+...........+........... -..+.+|+|+|.+++|
T Consensus       156 -~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~  218 (248)
T PRK10538        156 -QFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW  218 (248)
T ss_pred             -HHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHHHhhccccCCCCHHHHHHHHHH
Confidence             65522       2344555666665422211111100001111111 2346789999988765

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.8e-24  Score=193.24  Aligned_cols=207  Identities=19%  Similarity=0.262  Sum_probs=158.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..+++|+++||||++|||..+++.|+++|++ |++++|+.++......++...  +.++.++.+|++++++++++++.+.
T Consensus         2 ~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   79 (260)
T PRK06198          2 GRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAAD   79 (260)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            3578999999999999999999999999998 999999987777666666433  5678889999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                      +.++++|+||||||..  .+..+.+.+.|+.++++|+.+++++++.++++|.+.         +|+.+..+.++...|++
T Consensus        80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~  159 (260)
T PRK06198         80 EAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPFLAAYCA  159 (260)
T ss_pred             HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCCCcchhHH
Confidence            9999999999999985  345678899999999999999999999999999764         34444455567789999


Q ss_pred             cCccccCCCCccc-------cccCccCCCCcccCCHHH--HHHH----HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEAL--ATKL----WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ ++...+       ..+++.+.|++..++...  ...+    ..+...... .+++|+.+|+|+|.+++|
T Consensus       160 sK~a~~-~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  234 (260)
T PRK06198        160 SKGALA-TLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQPFGRLLDPDEVARAVAF  234 (260)
T ss_pred             HHHHHH-HHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccCCccCCcCHHHHHHHHHH
Confidence            999998 665432       234455566665554321  1111    111111111 126789999999987764

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.91  E-value=2.8e-24  Score=193.34  Aligned_cols=150  Identities=18%  Similarity=0.244  Sum_probs=133.4

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||+||||++++++|+++|++|++++|+.+.+++...++...  +.++.++.||+++++++.++++.+.+.++++
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   78 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA--GGDGFYQRCDVRDYSQLTALAQACEEKWGGI   78 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            47999999999999999999999999999999998888877777654  5578899999999999999999999999999


Q ss_pred             cEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccccC
Q psy4246         204 NILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLSL  273 (328)
Q Consensus       204 d~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~~  273 (328)
                      |+||||||+.  +++.+.+.++|++++++|+.+++.+++.++|+|.+.        ||+.+..+.++...|+++|+++. 
T Consensus        79 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~~-  157 (270)
T PRK05650         79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGPAMSSYNVAKAGVV-  157 (270)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCCCCchHHHHHHHHHH-
Confidence            9999999985  456788889999999999999999999999999764        55566677788899999999987 


Q ss_pred             CCC
Q psy4246         274 PVS  276 (328)
Q Consensus       274 ~~~  276 (328)
                      ++.
T Consensus       158 ~~~  160 (270)
T PRK05650        158 ALS  160 (270)
T ss_pred             HHH
Confidence            555

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.91  E-value=3.9e-24  Score=193.26  Aligned_cols=163  Identities=18%  Similarity=0.211  Sum_probs=136.8

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc-C
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF-R  201 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~-g  201 (328)
                      +|++|||||+||||+++|+.|+++|++|++++|+.+.++++.    .    ..+.++.+|++|.++++++++++.+.+ +
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~----~----~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g   75 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE----A----EGLEAFQLDYAEPESIAALVAQVLELSGG   75 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----H----CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999999999987665432    2    146788999999999999999997776 6


Q ss_pred             CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccc
Q psy4246         202 SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       202 ~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      ++|+||||||+.  +++.+.+.++++.++++|+.|++.+++.++|+|.+.        ||+.+..+.+....|+++|+++
T Consensus        76 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~  155 (277)
T PRK05993         76 RLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPMKYRGAYNASKFAI  155 (277)
T ss_pred             CccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCCCCccchHHHHHHHH
Confidence            899999999985  456778899999999999999999999999999875        5666677777889999999999


Q ss_pred             cCCCCc-------cccccCccCCCCcccCC
Q psy4246         272 SLPVSG-------SYFNNCCRCPPSKAAQD  294 (328)
Q Consensus       272 ~~~~~g-------~~~~~~~~~~~~~~~~~  294 (328)
                      + .++.       .+..+++...|++..++
T Consensus       156 ~-~~~~~l~~el~~~gi~v~~v~Pg~v~T~  184 (277)
T PRK05993        156 E-GLSLTLRMELQGSGIHVSLIEPGPIETR  184 (277)
T ss_pred             H-HHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence            8 6653       23455666677766665

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.2e-24  Score=192.38  Aligned_cols=198  Identities=18%  Similarity=0.209  Sum_probs=154.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++|+++||||++|||++++++|+++|++|++++|+.++.++...++...  +.++.++.+|+++++++.++++.+.++++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAPGIAELLEQFG   82 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999988777766666543  45788999999999999999999999999


Q ss_pred             CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccc
Q psy4246         202 SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       202 ~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      ++|+||||||..  .+..+.+.++++.++++|+.+++++++.++++|.+.        ||..+..+.++...|+++|+++
T Consensus        83 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~  162 (241)
T PRK07454         83 CPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFPQWGAYCVSKAAL  162 (241)
T ss_pred             CCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCCCccHHHHHHHHH
Confidence            999999999985  345677889999999999999999999999999764        4555555667788999999998


Q ss_pred             cCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         272 SLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      + .+...       +..+++.+.|+...++........   ...   ...++.+|+|+|.+++|
T Consensus       163 ~-~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~~~---~~~---~~~~~~~~~~va~~~~~  219 (241)
T PRK07454        163 A-AFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETVQ---ADF---DRSAMLSPEQVAQTILH  219 (241)
T ss_pred             H-HHHHHHHHHhhhhCCEEEEEecCcccCCcccccccc---ccc---ccccCCCHHHHHHHHHH
Confidence            8 65532       234555566666555431100000   000   12467788888887654

>PRK07069 short chain dehydrogenase; Validated

Probab=99.91  E-value=2.4e-24  Score=191.26  Aligned_cols=202  Identities=17%  Similarity=0.163  Sum_probs=153.0

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++||||++|||.++++.|+++|++|++++|+ .+.+++..+++........+..+.+|++|.++++++++++.+.++++|
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS   81 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence            7999999999999999999999999999998 666666666655433233566789999999999999999999999999


Q ss_pred             EEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccccCC
Q psy4246         205 ILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLSLP  274 (328)
Q Consensus       205 ~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~~~  274 (328)
                      +||||||..  .+..+.+.+++++++++|+.+++.+++.++|.|.+.        ||..+..+.++...|+++|+++. .
T Consensus        82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~~~Y~~sK~a~~-~  160 (251)
T PRK07069         82 VLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEPDYTAYNASKAAVA-S  160 (251)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCCCCchhHHHHHHHH-H
Confidence            999999985  445678889999999999999999999999999864        55555666678889999999988 6


Q ss_pred             CCccc---------cccCccCCCCcccCCHHHH--HHH--HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         275 VSGSY---------FNNCCRCPPSKAAQDEALA--TKL--WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       275 ~~g~~---------~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++..+         ..+++.+.|+...++....  ...  .+......+ .+++|+++|+|+|.+++|
T Consensus       161 ~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  228 (251)
T PRK07069        161 LTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVPLGRLGEPDDVAHAVLY  228 (251)
T ss_pred             HHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCCCCCCcCHHHHHHHHHH
Confidence            65321         1345556666555543211  000  001111111 125789999999988764

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.91  E-value=2.8e-24  Score=190.92  Aligned_cols=205  Identities=19%  Similarity=0.218  Sum_probs=154.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|+++++|||||++|||.++++.|+++|++|++++|+.+++++...++...  +.++..+.+|+++.++++++++.+.+.
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAED   79 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999988877777766544  557889999999999999999999988


Q ss_pred             cCCccEEEEccccCCC----------C-CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---ccc-----ceeccccc
Q psy4246         200 FRSLNILVLNAGVFGL----------G-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKL-----FARQQGAA  260 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~----------~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~-----~~~~~~~~  260 (328)
                      ++++|+||||||....          . .+.+.+.++.++++|+.|++.+++.++|.|.+.   +.+     .+..+.++
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~  159 (253)
T PRK08217         80 FGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNMG  159 (253)
T ss_pred             cCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCCC
Confidence            8999999999997421          1 466789999999999999999999999998654   111     22345567


Q ss_pred             chhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         261 TSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       261 ~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ...|+++|++++ .++..       +..+++...|+...++..... ..+..+.... .+.+++++|+|+|++++|
T Consensus       160 ~~~Y~~sK~a~~-~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  233 (253)
T PRK08217        160 QTNYSASKAGVA-AMTVTWAKELARYGIRVAAIAPGVIETEMTAAM-KPEALERLEKMIPVGRLGEPEEIAHTVRF  233 (253)
T ss_pred             CchhHHHHHHHH-HHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc-CHHHHHHHHhcCCcCCCcCHHHHHHHHHH
Confidence            889999999998 65532       233444455555544322110 0111111111 136788999999988764

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.91  E-value=1.2e-23  Score=193.57  Aligned_cols=126  Identities=37%  Similarity=0.551  Sum_probs=111.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .+|++|||||++|||+++|+.|+++| ++|++++|+.++++++.+++..  .+.++.++.+|+++.++++++++++.+.+
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   79 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM--PKDSYTIMHLDLGSLDSVRQFVQQFRESG   79 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999 9999999998887777766642  24578889999999999999999999889


Q ss_pred             CCccEEEEccccCCC---CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q psy4246         201 RSLNILVLNAGVFGL---GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG  249 (328)
Q Consensus       201 g~id~lvnnAg~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  249 (328)
                      ++||+||||||+..+   ..+.+.++|++++++|+.|++++++.++|+|++.
T Consensus        80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~  131 (314)
T TIGR01289        80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNS  131 (314)
T ss_pred             CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhC
Confidence            999999999998533   2466889999999999999999999999999754

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.91  E-value=4.1e-24  Score=190.32  Aligned_cols=206  Identities=24%  Similarity=0.230  Sum_probs=151.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+|++|+++||||+||||.++|+.|+++|++|+++ .|+.+++++...++...  +.++.++.+|++|++++.++++++.
T Consensus         2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~   79 (254)
T PRK12746          2 KNLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDGVKKLVEQLK   79 (254)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHHHHHHHHHHH
Confidence            35788999999999999999999999999999775 68877766666665432  4578899999999999999999998


Q ss_pred             Hhc------CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchh
Q psy4246         198 KKF------RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSI  263 (328)
Q Consensus       198 ~~~------g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~  263 (328)
                      +.+      +++|++|||||..  +...+.+.+.|+.++++|+.|++++++.+++.|.+.      ||..+..+.++...
T Consensus        80 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~  159 (254)
T PRK12746         80 NELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFTGSIA  159 (254)
T ss_pred             HHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCCCCcc
Confidence            887      5799999999985  335677889999999999999999999999998765      44445556677888


Q ss_pred             hhccCccccCCCCccc-------cccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhccccccccccccc
Q psy4246         264 YCATSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVV  327 (328)
Q Consensus       264 y~ask~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~  327 (328)
                      |+++|++++ .+...+       ..+++...|+...++....... ......... ...+++..++|||..+.
T Consensus       160 Y~~sK~a~~-~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~  231 (254)
T PRK12746        160 YGLSKGALN-TMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFATNSSVFGRIGQVEDIADAVA  231 (254)
T ss_pred             hHhhHHHHH-HHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHHHhcCCcCCCCCHHHHHHHHH
Confidence            999999988 554222       2333444455544432111000 000011111 12578889999987764

>PLN00015 protochlorophyllide reductase

Probab=99.91  E-value=7.6e-24  Score=194.29  Aligned_cols=199  Identities=26%  Similarity=0.355  Sum_probs=146.1

Q ss_pred             EEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         127 IVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       127 lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      |||||++|||+++|++|+++| ++|++++|+.+.++++..++...  +.++.++.+|++|.++++++++++.+.+++||+
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~   78 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMP--KDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDV   78 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCE
Confidence            699999999999999999999 99999999988877776666422  457888999999999999999999988999999


Q ss_pred             EEEccccCC---CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------cccceecc---------------
Q psy4246         206 LVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----------AKLFARQQ---------------  257 (328)
Q Consensus       206 lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------ss~~~~~~---------------  257 (328)
                      ||||||+..   +..+++.++|+++|++|+.|++++++.++|.|.+.          ||+.+..+               
T Consensus        79 lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~  158 (308)
T PLN00015         79 LVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL  158 (308)
T ss_pred             EEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhh
Confidence            999999853   34577899999999999999999999999999754          22222110               


Q ss_pred             --------------------cccchhhhccCccccCCCCc----c----ccccCccCCCCcc-cCCHHHHH-HHHHHH-H
Q psy4246         258 --------------------GAATSIYCATSLDLSLPVSG----S----YFNNCCRCPPSKA-AQDEALAT-KLWKLS-E  306 (328)
Q Consensus       258 --------------------~~~~~~y~ask~al~~~~~g----~----~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-~  306 (328)
                                          ..+...|++||++.. .++.    .    ....++.+.|+.. .++..... ...... .
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~-~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~~  237 (308)
T PLN00015        159 RGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNM-LTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFP  237 (308)
T ss_pred             hhhhcccCCccchhhccccCCcHHHHHhHhHHHHH-HHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHHHHHH
Confidence                                024567999999955 3321    1    2345666777766 33321110 001101 0


Q ss_pred             HHHHHHHhcccccccccccccC
Q psy4246         307 EMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       307 ~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      .....+++|+.+|+|.|..++|
T Consensus       238 ~~~~~~~~~~~~pe~~a~~~~~  259 (308)
T PLN00015        238 PFQKYITKGYVSEEEAGKRLAQ  259 (308)
T ss_pred             HHHHHHhcccccHHHhhhhhhh
Confidence            1112236788999999988765

>KOG1610|consensus

Probab=99.91  E-value=6.7e-24  Score=187.03  Aligned_cols=170  Identities=23%  Similarity=0.301  Sum_probs=146.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++.+|.|+|||+.+|+|+.+|++|.++|..|++.+.+++..+.+..+..    ..+...++.||+++++|+++.+.+.+.
T Consensus        26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~----s~rl~t~~LDVT~~esi~~a~~~V~~~  101 (322)
T KOG1610|consen   26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK----SPRLRTLQLDVTKPESVKEAAQWVKKH  101 (322)
T ss_pred             ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc----CCcceeEeeccCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999988877776665543    458888999999999999999888876


Q ss_pred             c--CCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhcc
Q psy4246         200 F--RSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       200 ~--g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~as  267 (328)
                      .  ..+..||||||+.   ++.+-++.+++.++++||++|++.+++.++|+++++       +|+.|..+.+....|++|
T Consensus       102 l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~p~~g~Y~~S  181 (322)
T KOG1610|consen  102 LGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVALPALGPYCVS  181 (322)
T ss_pred             cccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccCcccccchhh
Confidence            5  3599999999974   667788999999999999999999999999999987       888899999999999999


Q ss_pred             CccccCCCC-------ccccccCccCCCCcccCC
Q psy4246         268 SLDLSLPVS-------GSYFNNCCRCPPSKAAQD  294 (328)
Q Consensus       268 k~al~~~~~-------g~~~~~~~~~~~~~~~~~  294 (328)
                      |+|++ .++       ..|...+.++.|+...++
T Consensus       182 K~aVe-af~D~lR~EL~~fGV~VsiiePG~f~T~  214 (322)
T KOG1610|consen  182 KFAVE-AFSDSLRRELRPFGVKVSIIEPGFFKTN  214 (322)
T ss_pred             HHHHH-HHHHHHHHHHHhcCcEEEEeccCccccc
Confidence            99999 655       345666677777644443

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.91  E-value=7e-24  Score=191.31  Aligned_cols=206  Identities=21%  Similarity=0.285  Sum_probs=155.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+.+.+...++...  +.++.++.+|+++++++.++++++.+.
T Consensus         7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (274)
T PRK07775          7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD--GGEAVAFPLDVTDPDSVKSFVAQAEEA   84 (274)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            356789999999999999999999999999999999887776666555543  457888999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ++++|+||||||..  .+..+.+.+.+++++++|+.|++++++++++.|.+.        ||..+..+.+....|+++|+
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  164 (274)
T PRK07775         85 LGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRPHMGAYGAAKA  164 (274)
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCcchHHHHHH
Confidence            99999999999985  345677889999999999999999999999988754        44444555566788999999


Q ss_pred             cccCCCCccc-------cccCccCCCCcccCCHHH---HHHHHHHHHHHHH---HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGSY-------FNNCCRCPPSKAAQDEAL---ATKLWKLSEEMIQ---SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~-------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .+...+       ..+++...|++..+....   ........+....   ...+++..++|+|.+++|
T Consensus       165 a~~-~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~  235 (274)
T PRK07775        165 GLE-AMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWGQARHDYFLRASDLARAITF  235 (274)
T ss_pred             HHH-HHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhcccccccccCHHHHHHHHHH
Confidence            998 666433       345555566655443211   1111111111111   113568899999988764

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.91  E-value=4.5e-24  Score=189.74  Aligned_cols=171  Identities=27%  Similarity=0.344  Sum_probs=138.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH--HHHHHHHHHhhCCC-CeEEEEEcccCC-HHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK--ANDAISKILTEKPS-AQCIAMELNLCR-LKSVKKFAEE  195 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~--~~~~~~~l~~~~~~-~~~~~~~~Dls~-~~~v~~~~~~  195 (328)
                      ++.+|++|||||++|||+++|+.|+++|++|+++.++.+.  .+.......  ..+ ..+.+..+|+++ .++++.+++.
T Consensus         2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~~   79 (251)
T COG1028           2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVAA   79 (251)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHHH
Confidence            5789999999999999999999999999999888887654  333333332  112 368888999998 9999999999


Q ss_pred             HHHhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----cccceeccccc-chhhhc
Q psy4246         196 YQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----AKLFARQQGAA-TSIYCA  266 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----ss~~~~~~~~~-~~~y~a  266 (328)
                      +.+.+|++|+||||||+.   .++.+.+.++|++++++|+.|++.+++.+.|+|+++     ||+.+. ..+. ...|++
T Consensus        80 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~~~~~Y~~  158 (251)
T COG1028          80 AEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPPGQAAYAA  158 (251)
T ss_pred             HHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCCCcchHHH
Confidence            999999999999999996   367889999999999999999999999888888844     555666 6566 489999


Q ss_pred             cCccccCCCC-------ccccccCccCCCCcccCC
Q psy4246         267 TSLDLSLPVS-------GSYFNNCCRCPPSKAAQD  294 (328)
Q Consensus       267 sk~al~~~~~-------g~~~~~~~~~~~~~~~~~  294 (328)
                      ||+++. +++       ..+..+++.+.|+...++
T Consensus       159 sK~al~-~~~~~l~~e~~~~gi~v~~v~PG~~~t~  192 (251)
T COG1028         159 SKAALI-GLTKALALELAPRGIRVNAVAPGYIDTP  192 (251)
T ss_pred             HHHHHH-HHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence            999998 666       234456666777755544

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.91  E-value=2.5e-24  Score=190.09  Aligned_cols=174  Identities=22%  Similarity=0.220  Sum_probs=142.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC--HHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR--LKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~--~~~v~~~~~~~  196 (328)
                      .+|++|+++||||++|||+++++.|+++|++|++++|+.+.+++...++.... +..+.++.+|+++  .+++.++++++
T Consensus         2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~i   80 (239)
T PRK08703          2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-HPEPFAIRFDLMSAEEKEFEQFAATI   80 (239)
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-CCCcceEEeeecccchHHHHHHHHHH
Confidence            35789999999999999999999999999999999999988877777765432 3467788999986  56889999999


Q ss_pred             HHhc-CCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhh
Q psy4246         197 QKKF-RSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIY  264 (328)
Q Consensus       197 ~~~~-g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y  264 (328)
                      .+.+ +++|+||||||..   .++.+.+.++|.+++++|+.|+++++++++|.|.+.        +|..+..+.+....|
T Consensus        81 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y  160 (239)
T PRK08703         81 AEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGF  160 (239)
T ss_pred             HHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCCCCccch
Confidence            9888 8999999999974   456788899999999999999999999999999764        344555566677889


Q ss_pred             hccCccccCCCCccc--------cccCccCCCCcccCC
Q psy4246         265 CATSLDLSLPVSGSY--------FNNCCRCPPSKAAQD  294 (328)
Q Consensus       265 ~ask~al~~~~~g~~--------~~~~~~~~~~~~~~~  294 (328)
                      +++|++++ .+...+        ..+++.+.|+...++
T Consensus       161 ~~sKaa~~-~~~~~la~e~~~~~~i~v~~v~pG~v~t~  197 (239)
T PRK08703        161 GASKAALN-YLCKVAADEWERFGNLRANVLVPGPINSP  197 (239)
T ss_pred             HHhHHHHH-HHHHHHHHHhccCCCeEEEEEecCcccCc
Confidence            99999998 665322        244555667666554

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.91  E-value=4.1e-24  Score=189.63  Aligned_cols=203  Identities=16%  Similarity=0.141  Sum_probs=150.0

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEee-CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|++|||||++|||.++|+.|+++|++|+++. |+.+.++....++...  +.++.++.||+++.++++++++++.+.++
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAA--GGRACVVAGDVANEADVIAMFDAVQSAFG   79 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            36899999999999999999999999998765 5666666666666443  45789999999999999999999999999


Q ss_pred             CccEEEEccccCC---CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----------cccceeccccc-chhhhc
Q psy4246         202 SLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----------AKLFARQQGAA-TSIYCA  266 (328)
Q Consensus       202 ~id~lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----------ss~~~~~~~~~-~~~y~a  266 (328)
                      ++|+||||||+..   +..+.+.++|+.++++|+.+++++++.+++.|...           +|..+..+.+. ...|++
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~~Y~~  159 (248)
T PRK06947         80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAG  159 (248)
T ss_pred             CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCCCCcccHh
Confidence            9999999999852   35677889999999999999999999999988643           33333444443 467999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHH-HHHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      +|+++. +++..       +..+++.+.|+...++........+..+... ..+++|..+|||+|..++|
T Consensus       160 sK~~~~-~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~e~va~~~~~  228 (248)
T PRK06947        160 SKGAVD-TLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEADEVAETIVW  228 (248)
T ss_pred             hHHHHH-HHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            999988 65532       2345556667666554311100011111111 1136788999999988765

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.91  E-value=7.4e-24  Score=187.06  Aligned_cols=173  Identities=24%  Similarity=0.332  Sum_probs=142.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++++|+++||||++|||++++++|+++|++|++++|+.++.++...++...  +.++.++.+|++++++++++++++.+
T Consensus         3 ~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (239)
T PRK07666          3 QSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKN   80 (239)
T ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999988877777676543  55889999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      +++++|+||||||..  +.+.+.+.++|++++++|+.+++++++.+.++|.+.        +|..+..+.++...|+++|
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK  160 (239)
T PRK07666         81 ELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAAVTSAYSASK  160 (239)
T ss_pred             HcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCCCCcchHHHH
Confidence            999999999999975  345677889999999999999999999999998765        4445555667778899999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQD  294 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~  294 (328)
                      +++. .+...       +..+++...|+...++
T Consensus       161 ~a~~-~~~~~~a~e~~~~gi~v~~v~pg~v~t~  192 (239)
T PRK07666        161 FGVL-GLTESLMQEVRKHNIRVTALTPSTVATD  192 (239)
T ss_pred             HHHH-HHHHHHHHHhhccCcEEEEEecCcccCc
Confidence            9987 55422       2344555556555444

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.2e-23  Score=187.89  Aligned_cols=167  Identities=14%  Similarity=0.126  Sum_probs=136.3

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||++|||.++++.|+++|++|++++|+.+.+++..+++...  + ++.++.+|++|.+++.++++++.+++++
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA--A-RVSVYAADVRDADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC--C-eeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999999999999999988777665555321  2 7889999999999999999999999999


Q ss_pred             ccEEEEccccCCC--C-CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccc
Q psy4246         203 LNILVLNAGVFGL--G-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       203 id~lvnnAg~~~~--~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      +|+||||||+...  . .+.+.++++.++++|+.|++++++.++|.|.+.        +|+.+..+.+....|+++|+++
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~  158 (257)
T PRK07024         79 PDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLPGAGAYSASKAAA  158 (257)
T ss_pred             CCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCCcchHHHHHHH
Confidence            9999999998532  2 236788999999999999999999999999764        5556666778888999999999


Q ss_pred             cCCCCc-------cccccCccCCCCcccC
Q psy4246         272 SLPVSG-------SYFNNCCRCPPSKAAQ  293 (328)
Q Consensus       272 ~~~~~g-------~~~~~~~~~~~~~~~~  293 (328)
                      + .+..       .+..++....|+...+
T Consensus       159 ~-~~~~~l~~e~~~~gi~v~~v~Pg~v~t  186 (257)
T PRK07024        159 I-KYLESLRVELRPAGVRVVTIAPGYIRT  186 (257)
T ss_pred             H-HHHHHHHHHhhccCcEEEEEecCCCcC
Confidence            8 6652       2334444455554433

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.90  E-value=1.6e-23  Score=186.65  Aligned_cols=204  Identities=17%  Similarity=0.182  Sum_probs=157.6

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|++|||||+++||.++|++|+++|++|++++|+.++.+....++...  +.++.++.||+++.++++++++.+.+.+
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999988887777776553  5688999999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      +++|+||||||..  ....+.+.++++.++++|+.+++.+++.+++.|.+.        ||+.+..+.++...|+++|++
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~y~~~k~a  159 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSAGKAAYVSAKHG  159 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCcchhHHHHHH
Confidence            9999999999974  445677889999999999999999999999999765        566666777888999999999


Q ss_pred             ccCCCCccc-------cccCccCCCCcccCCHHHHHHHHH-----------HHHHHHHH--HHhcccccccccccccC
Q psy4246         271 LSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWK-----------LSEEMIQS--VVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~--~~~r~g~p~dia~~v~F  328 (328)
                      +. .+...+       ..+++...|+...++... ..+..           ...+....  ..+++..++|+|.+++|
T Consensus       160 ~~-~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~  235 (258)
T PRK12429        160 LI-GLTKVVALEGATHGVTVNAICPGYVDTPLVR-KQIPDLAKERGISEEEVLEDVLLPLVPQKRFTTVEEIADYALF  235 (258)
T ss_pred             HH-HHHHHHHHHhcccCeEEEEEecCCCcchhhh-hhhhhhccccCCChHHHHHHHHhccCCccccCCHHHHHHHHHH
Confidence            88 665433       223344445544433211 11111           00111111  14678899999987654

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.90  E-value=2.6e-24  Score=189.42  Aligned_cols=191  Identities=18%  Similarity=0.234  Sum_probs=142.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|+++||||++|||.++++.|+++|++|++++|+....      .     ..++.++.+|++++      ++++.+.
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~------~-----~~~~~~~~~D~~~~------~~~~~~~   64 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD------L-----SGNFHFLQLDLSDD------LEPLFDW   64 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc------c-----CCcEEEEECChHHH------HHHHHHh
Confidence            57899999999999999999999999999999999975321      0     23678899999987      4555556


Q ss_pred             cCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++++|+||||||+.   .+..+.+.++|++++++|+.|+++++++++|.|.++        ||+.+..+.++...|+++|
T Consensus        65 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK  144 (235)
T PRK06550         65 VPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGGGAAYTASK  144 (235)
T ss_pred             hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCCcccHHHH
Confidence            78999999999974   455778899999999999999999999999999764        5556666777888999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH-HHHHHHHH-HHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL-WKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      +++. ++...       ...+++.+.|+...++....... ........ ..+++|+.+|+|+|.+++|
T Consensus       145 ~a~~-~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  212 (235)
T PRK06550        145 HALA-GFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARETPIKRWAEPEEVAELTLF  212 (235)
T ss_pred             HHHH-HHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccCCcCCCCCHHHHHHHHHH
Confidence            9988 65532       23455556666554442111000 01111111 1247899999999998875

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.90  E-value=8.5e-24  Score=188.42  Aligned_cols=202  Identities=20%  Similarity=0.241  Sum_probs=150.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|++|||||++|||.++|+.|+++|++|++++|+. +..+.....+...  +.++.++.+|+++++++.++++++.+.++
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRAL--GVEVIFFPADVADLSAHEAMLDAAQAAWG   79 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            47899999999999999999999999999999864 3344444444332  45789999999999999999999999999


Q ss_pred             CccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cccceecccccchh
Q psy4246         202 SLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------------AKLFARQQGAATSI  263 (328)
Q Consensus       202 ~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss~~~~~~~~~~~~  263 (328)
                      ++|++|||||..    .++.+.+.+.|++++++|+.+++++++++++.|.++              ||+.+..+..+...
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~  159 (256)
T PRK12745         80 RIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNRGE  159 (256)
T ss_pred             CCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCCCcc
Confidence            999999999974    235677889999999999999999999999998754              33344555667789


Q ss_pred             hhccCccccCCCCcc-------ccccCccCCCCcccCCHHHH--HHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALA--TKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      |+++|++++ .+...       +..+++.+.|+...++....  ......... ...++++++.|+|++.+++|
T Consensus       160 Y~~sK~a~~-~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~~i~~  231 (256)
T PRK12745        160 YCISKAGLS-MAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTAKYDALIAK-GLVPMPRWGEPEDVARAVAA  231 (256)
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHhCCEEEEEecCCCcCccccccchhHHhhhhh-cCCCcCCCcCHHHHHHHHHH
Confidence            999999998 65532       33455556666555432211  111111111 01236789999999887653

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.90  E-value=1.1e-23  Score=186.95  Aligned_cols=199  Identities=22%  Similarity=0.236  Sum_probs=152.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC--CHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC--RLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls--~~~~v~~~~~~~~  197 (328)
                      .+++|+++||||++|||.++++.|+++|++|++++|+.+.+++...++.... ..++.++.+|++  +.++++++++.+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999888777777765542 346667777775  7899999999999


Q ss_pred             HhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      +.++++|+||||||..   .+..+.+.+.|++.+++|+.|+++++++++++|.+.        ||..+..+.++...|++
T Consensus        88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~~~~~Y~~  167 (247)
T PRK08945         88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRANWGAYAV  167 (247)
T ss_pred             HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCCCCCcccHH
Confidence            9999999999999975   345677889999999999999999999999999764        55555666778889999


Q ss_pred             cCccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .+...+       ..+++...|+...+..  ......      .....++.+|+|++..++|
T Consensus       168 sK~a~~-~~~~~~~~~~~~~~i~~~~v~pg~v~t~~--~~~~~~------~~~~~~~~~~~~~~~~~~~  227 (247)
T PRK08945        168 SKFATE-GMMQVLADEYQGTNLRVNCINPGGTRTAM--RASAFP------GEDPQKLKTPEDIMPLYLY  227 (247)
T ss_pred             HHHHHH-HHHHHHHHHhcccCEEEEEEecCCccCcc--hhhhcC------cccccCCCCHHHHHHHHHH
Confidence            999988 554222       2233444555444332  111100      0113467888888877765

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.8e-23  Score=188.56  Aligned_cols=161  Identities=20%  Similarity=0.275  Sum_probs=133.1

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||+||||+++++.|+++|++|++++|+.+.++...    .    ..+.++.+|+++.++++++++.+.+.++++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~----~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   73 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA----A----AGFTAVQLDVNDGAALARLAEELEAEHGGL   73 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----H----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            68999999999999999999999999999999976654332    1    135678999999999999999999999999


Q ss_pred             cEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCccccCC
Q psy4246         204 NILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLDLSLP  274 (328)
Q Consensus       204 d~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~al~~~  274 (328)
                      |+||||||+.  ++..+.+.+++++++++|+.|++.++++++|.|.+.       +|+.+..+.+....|+++|++++ .
T Consensus        74 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~al~-~  152 (274)
T PRK05693         74 DVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVTPFAGAYCASKAAVH-A  152 (274)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCCCCccHHHHHHHHHH-H
Confidence            9999999974  456778899999999999999999999999999765       55566666777889999999988 6


Q ss_pred             CCcc-------ccccCccCCCCcccC
Q psy4246         275 VSGS-------YFNNCCRCPPSKAAQ  293 (328)
Q Consensus       275 ~~g~-------~~~~~~~~~~~~~~~  293 (328)
                      ++..       +..+++...|+...+
T Consensus       153 ~~~~l~~e~~~~gi~v~~v~pg~v~t  178 (274)
T PRK05693        153 LSDALRLELAPFGVQVMEVQPGAIAS  178 (274)
T ss_pred             HHHHHHHHhhhhCeEEEEEecCcccc
Confidence            5522       344555555655544

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.6e-23  Score=187.34  Aligned_cols=166  Identities=16%  Similarity=0.094  Sum_probs=136.5

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh-cCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK-FRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~-~g~  202 (328)
                      |++|||||++|||++++++|+++|++|++++|+.+.++++...+.    +.++.++.+|+++.++++++++.+.+. +++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~   77 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR   77 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            789999999999999999999999999999999887776655442    457899999999999999999998877 799


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +|+||||||+.  .++.+.+.++++.++++|+.+++++++++.++|+..        ||..+..+.++...|+++|++++
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sKaa~~  157 (260)
T PRK08267         78 LDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPGLAVYSATKFAVR  157 (260)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCCchhhHHHHHHHH
Confidence            99999999985  345678889999999999999999999999999764        45555666778889999999987


Q ss_pred             CCCCcc-------ccccCccCCCCcccCC
Q psy4246         273 LPVSGS-------YFNNCCRCPPSKAAQD  294 (328)
Q Consensus       273 ~~~~g~-------~~~~~~~~~~~~~~~~  294 (328)
                       .+...       +..+++.+.|+...++
T Consensus       158 -~~~~~l~~~~~~~~i~v~~i~pg~~~t~  185 (260)
T PRK08267        158 -GLTEALDLEWRRHGIRVADVMPLFVDTA  185 (260)
T ss_pred             -HHHHHHHHHhcccCcEEEEEecCCcCCc
Confidence             55432       2244455555555443

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.90  E-value=3.3e-23  Score=184.07  Aligned_cols=205  Identities=17%  Similarity=0.238  Sum_probs=154.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++++|++|||||++|||.+++++|+++|++|++..|+ .+........+...  +.++.++.+|+++.+++..+++++.
T Consensus         2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   79 (252)
T PRK06077          2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKEN--GGEGIGVLADVSTREGCETLAKATI   79 (252)
T ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHc--CCeeEEEEeccCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999887754 34444444444433  4578889999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +.++++|+||||||..  .+..+.+.+.++..+++|+.+++.++++++|+|.+.      +|..+..+.++...|+++|+
T Consensus        80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~  159 (252)
T PRK06077         80 DRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPAYGLSIYGAMKA  159 (252)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCCCCchHHHHHHH
Confidence            9999999999999974  445677888999999999999999999999999874      55566667778899999999


Q ss_pred             cccCCCCcccc------ccCccCCCCcccCCHHHHHHHHH---H-HHHHHHH--HHhcccccccccccccC
Q psy4246         270 DLSLPVSGSYF------NNCCRCPPSKAAQDEALATKLWK---L-SEEMIQS--VVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~--~~~r~g~p~dia~~v~F  328 (328)
                      +++ .+...+.      .+++...|+...++..  ..+..   . .+...+.  ..+++..|+|+|.+++|
T Consensus       160 ~~~-~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  227 (252)
T PRK06077        160 AVI-NLTKYLALELAPKIRVNAIAPGFVKTKLG--ESLFKVLGMSEKEFAEKFTLMGKILDPEEVAEFVAA  227 (252)
T ss_pred             HHH-HHHHHHHHHHhcCCEEEEEeeCCccChHH--HhhhhcccccHHHHHHhcCcCCCCCCHHHHHHHHHH
Confidence            988 6664332      2334445555544432  11111   1 1112111  14678999999987653

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.90  E-value=1.5e-23  Score=185.33  Aligned_cols=201  Identities=19%  Similarity=0.151  Sum_probs=148.3

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      |++|||||++|||.++|+.|+++|++|++++|+... ..+....+..  .+.++.++.+|+++.++++++++.+.+++++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   80 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGF--TEDQVRLKELDVTDTEECAEALAEIEEEEGP   80 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhc--cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999999998542 2222222211  2457899999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +|+||||||..  .++.+.+.++|++++++|+.+++++++.+++.|.+.        +|..+..+.++...|+++|++++
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~Y~~sK~a~~  160 (245)
T PRK12824         81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQFGQTNYSAAKAGMI  160 (245)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCCCChHHHHHHHHHH
Confidence            99999999985  445678899999999999999999999999999764        45555566677889999999988


Q ss_pred             CCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         273 LPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                       ++...+       ..+++...|+...++..... .....+.... .+++++.+++|++..++|
T Consensus       161 -~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~va~~~~~  222 (245)
T PRK12824        161 -GFTKALASEGARYGITVNCIAPGYIATPMVEQM-GPEVLQSIVNQIPMKRLGTPEEIAAAVAF  222 (245)
T ss_pred             -HHHHHHHHHHHHhCeEEEEEEEcccCCcchhhc-CHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence             555332       23344444554443321110 0011111111 136788899999987754

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.90  E-value=2e-23  Score=184.34  Aligned_cols=201  Identities=17%  Similarity=0.187  Sum_probs=149.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      |++|||||++|||+++|+.|+++|++|+++.| +.+..++...++...  +.++.++.+|++|+++++++++++.+.+++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGAL--GFDFRVVEGDVSSFESCKAAVAKVEAELGP   78 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999888 555555544444332  457889999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +|+||||||..  .+..+.+.+++++++++|+.+++.+++.+++.|++.        ||..+..+.++...|+++|+++.
T Consensus        79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~y~~sk~a~~  158 (242)
T TIGR01829        79 IDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQFGQTNYSAAKAGMI  158 (242)
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCcchhHHHHHHHH
Confidence            99999999985  335677889999999999999999999999999764        44455566677889999999887


Q ss_pred             CCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         273 LPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                       .+...+       ..+++.+.|+...++....- .......... .+++|+++|+|++..+.|
T Consensus       159 -~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  220 (242)
T TIGR01829       159 -GFTKALAQEGATKGVTVNTISPGYIATDMVMAM-REDVLNSIVAQIPVGRLGRPEEIAAAVAF  220 (242)
T ss_pred             -HHHHHHHHHhhhhCeEEEEEeeCCCcCcccccc-chHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence             544322       23334445555444321110 0111111111 236789999999987654

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.90  E-value=7e-23  Score=181.73  Aligned_cols=153  Identities=18%  Similarity=0.240  Sum_probs=132.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|+++||||++|||++++++|+++|++|++++|+.+.+++...++....++.++.++.+|+++.++++++++++.+.+++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999999888877777766555678999999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceeccccc-chhhhccCccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAA-TSIYCATSLDL  271 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~-~~~y~ask~al  271 (328)
                      +|++|||||+.  .+..+.+.+.+++++++|+.+++.+++.++|+|++.        ||..+..+.+. ...|+++|+++
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK~a~  161 (248)
T PRK08251         82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPGVKAAYAASKAGV  161 (248)
T ss_pred             CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCCCcccHHHHHHHH
Confidence            99999999985  334566788999999999999999999999998764        45455555553 57899999998


Q ss_pred             cCCCC
Q psy4246         272 SLPVS  276 (328)
Q Consensus       272 ~~~~~  276 (328)
                      . .+.
T Consensus       162 ~-~~~  165 (248)
T PRK08251        162 A-SLG  165 (248)
T ss_pred             H-HHH
Confidence            7 555

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.2e-23  Score=185.25  Aligned_cols=199  Identities=17%  Similarity=0.138  Sum_probs=147.3

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      |++|||||++|||+++|++|+++|++|++++|+. +.+++.    .... +.++.++.+|+++.++++++++++.+.++.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~----~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKL----AEQY-NSNLTFHSLDLQDVHELETNFNEILSSIQE   76 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHH----Hhcc-CCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence            6899999999999999999999999999999986 333322    2221 457889999999999999999999877653


Q ss_pred             c--c--EEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         203 L--N--ILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       203 i--d--~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                      .  +  ++|+|||..   .++.+.+.++|.+++++|+.+++.+++.++|+|++.         ||..+..+.++...|++
T Consensus        77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~  156 (251)
T PRK06924         77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYFGWSAYCS  156 (251)
T ss_pred             ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCCCCcHHHhH
Confidence            2  2  899999985   346788999999999999999999999999999763         33344556677889999


Q ss_pred             cCccccCCCCcc---------ccccCccCCCCcccCCHHHHH-----HHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS---------YFNNCCRCPPSKAAQDEALAT-----KLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .+...         +..+++.+.|+...++.....     ..+...+...+. ..+|+.+|+|+|..++|
T Consensus       157 sKaa~~-~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  232 (251)
T PRK06924        157 SKAGLD-MFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLKEEGKLLSPEYVAKALRN  232 (251)
T ss_pred             HHHHHH-HHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHHhhcCCcCCHHHHHHHHHH
Confidence            999998 66532         224455566666655432110     001111122222 36899999999998764

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.90  E-value=4.5e-23  Score=182.90  Aligned_cols=205  Identities=22%  Similarity=0.208  Sum_probs=153.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++.+|++|||||+++||.++++.|+++|++|++++|+.+++.....++...  +.++.++.+|++|.++++++++++.++
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA--GGKARARQVDVRDRAALKAAVAAGVED   80 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988777777766554  456889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee-cccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR-QQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~-~~~~~~~~y~ask  268 (328)
                      ++++|+||||||..  .+..+.+.+++.+.+++|+.+++.+++.+++.|.+.        +|..+. .+.+....|+++|
T Consensus        81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~~~~y~~sK  160 (251)
T PRK12826         81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGYPGLAHYAASK  160 (251)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCCCCccHHHHHH
Confidence            99999999999985  345577889999999999999999999999998764        333334 4556778899999


Q ss_pred             ccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHH-HHHHhccccccccccccc
Q psy4246         269 LDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMI-QSVVSTWLEETTERGEVV  327 (328)
Q Consensus       269 ~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~g~p~dia~~v~  327 (328)
                      ++++ .+...+       ..++....|+...++............... ..+++++..++|+|..++
T Consensus       161 ~a~~-~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~  226 (251)
T PRK12826        161 AGLV-GFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIPLGRLGEPEDIAAAVL  226 (251)
T ss_pred             HHHH-HHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence            9987 554332       223333444444333211110000011111 123568889999887764

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.89  E-value=5.1e-23  Score=183.59  Aligned_cols=170  Identities=12%  Similarity=0.158  Sum_probs=134.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhH-HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDK-ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+|++|||||++|||+++|++|+++| ++|++++|+.+. ++++.+++.... +.++.++.+|++|.++++++++++.+ 
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~-   84 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFA-   84 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHh-
Confidence            57899999999999999999999995 899999999876 777777776542 34789999999999999999999886 


Q ss_pred             cCCccEEEEccccCCCCCC--CChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVFGLGFS--HTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~--~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ++++|++|||+|+..+...  .+.++..+++++|+.+++++++.++|.|.++        ||+.+..+.++...|+++|+
T Consensus        85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~~~~~~~Y~~sKa  164 (253)
T PRK07904         85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERVRRSNFVYGSTKA  164 (253)
T ss_pred             cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCCCCCCcchHHHHH
Confidence            5899999999998643221  2344566789999999999999999999875        45555555567788999999


Q ss_pred             cccCCCCc-------cccccCccCCCCcccCC
Q psy4246         270 DLSLPVSG-------SYFNNCCRCPPSKAAQD  294 (328)
Q Consensus       270 al~~~~~g-------~~~~~~~~~~~~~~~~~  294 (328)
                      ++. .++.       .+..+++...|+...++
T Consensus       165 a~~-~~~~~l~~el~~~~i~v~~v~Pg~v~t~  195 (253)
T PRK07904        165 GLD-GFYLGLGEALREYGVRVLVVRPGQVRTR  195 (253)
T ss_pred             HHH-HHHHHHHHHHhhcCCEEEEEeeCceecc
Confidence            987 5542       23345555666655443

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.2e-23  Score=184.07  Aligned_cols=180  Identities=14%  Similarity=0.107  Sum_probs=135.6

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .++||||++|||+++++.|+++|++|++++|+.+++++..+++       .+.++.+|+++.++++++++++.+   ++|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~---~id   71 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL-------DVDAIVCDNTDPASLEEARGLFPH---HLD   71 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-------cCcEEecCCCCHHHHHHHHHHHhh---cCc
Confidence            4899999999999999999999999999999987776555443       345789999999999999887753   699


Q ss_pred             EEEEccccCC--------CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcccccee--cccccchhhhccCccccCC
Q psy4246         205 ILVLNAGVFG--------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFAR--QQGAATSIYCATSLDLSLP  274 (328)
Q Consensus       205 ~lvnnAg~~~--------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~~~~--~~~~~~~~y~ask~al~~~  274 (328)
                      +||||||...        ++.+ +.++|++++++|+.++++++++++|+|.+.+++...  ...+....|+++|+++. +
T Consensus        72 ~lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~Y~asKaal~-~  149 (223)
T PRK05884         72 TIVNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENPPAGSAEAAIKAALS-N  149 (223)
T ss_pred             EEEECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCCccccHHHHHHHH-H
Confidence            9999998521        1222 568999999999999999999999999876655321  22345688999999999 7


Q ss_pred             CCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         275 VSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       275 ~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++.       .+..+++.+.|+...++..  +.       ...   ...++|+|||.+++|
T Consensus       150 ~~~~la~e~~~~gI~v~~v~PG~v~t~~~--~~-------~~~---~p~~~~~~ia~~~~~  198 (223)
T PRK05884        150 WTAGQAAVFGTRGITINAVACGRSVQPGY--DG-------LSR---TPPPVAAEIARLALF  198 (223)
T ss_pred             HHHHHHHHhhhcCeEEEEEecCccCchhh--hh-------ccC---CCCCCHHHHHHHHHH
Confidence            763       3445667777777655421  10       000   113478888887765

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.89  E-value=6.2e-23  Score=185.17  Aligned_cols=148  Identities=17%  Similarity=0.205  Sum_probs=126.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      .|++|||||+||||++++++|+++|++|++++|+.+.++.....+     +.++.++.+|++|.++++++++++.+.+++
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAFAALGR   76 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            378999999999999999999999999999999987665543332     346888999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +|+||||||..  ++..+.+.+++++++++|+.|+++++++++|+|++.        ||..+..+.++...|+++|++++
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  156 (276)
T PRK06482         77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAYPGFSLYHATKWGIE  156 (276)
T ss_pred             CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCCCCCchhHHHHHHHH
Confidence            99999999985  445677889999999999999999999999998764        45555556677889999999988


Q ss_pred             CCCC
Q psy4246         273 LPVS  276 (328)
Q Consensus       273 ~~~~  276 (328)
                       .+.
T Consensus       157 -~~~  159 (276)
T PRK06482        157 -GFV  159 (276)
T ss_pred             -HHH
Confidence             555

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.89  E-value=2e-23  Score=201.18  Aligned_cols=200  Identities=19%  Similarity=0.188  Sum_probs=151.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh--hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL--DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..++||++|||||++|||+++|+.|+++|++|+++++..  +.+++...++       ....+.+|+++.++++++++.+
T Consensus       206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~-------~~~~~~~Dv~~~~~~~~~~~~~  278 (450)
T PRK08261        206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRV-------GGTALALDITAPDAPARIAEHL  278 (450)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc-------CCeEEEEeCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999998853  2233322221       2356899999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH--hc------cccceecccccchhhhc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI--KG------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~--~~------ss~~~~~~~~~~~~y~a  266 (328)
                      .+.++++|+||||||+.  ..+.+.+.+.|+.++++|+.|++++++++++.+.  +.      ||+.+..+.++...|++
T Consensus       279 ~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~~~~~Y~a  358 (450)
T PRK08261        279 AERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNRGQTNYAA  358 (450)
T ss_pred             HHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCChHHHH
Confidence            99999999999999985  3456789999999999999999999999999543  32      56666667788899999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHH--HHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS--VVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ ++...       +...++.+.|+...+..  .........+..+.  .++|.+.|+|||++++|
T Consensus       359 sKaal~-~~~~~la~el~~~gi~v~~v~PG~i~t~~--~~~~~~~~~~~~~~~~~l~~~~~p~dva~~~~~  426 (450)
T PRK08261        359 SKAGVI-GLVQALAPLLAERGITINAVAPGFIETQM--TAAIPFATREAGRRMNSLQQGGLPVDVAETIAW  426 (450)
T ss_pred             HHHHHH-HHHHHHHHHHhhhCcEEEEEEeCcCcchh--hhccchhHHHHHhhcCCcCCCCCHHHHHHHHHH
Confidence            999988 66633       33455666666655432  22111111111111  36788999999998876

>PRK09135 pteridine reductase; Provisional

Probab=99.89  E-value=3.7e-23  Score=183.22  Aligned_cols=206  Identities=20%  Similarity=0.201  Sum_probs=147.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+.++++|||||+||||++++++|+++|++|++++|+. +..+.....+.... +..+.++.+|++|.+++..+++.+.+
T Consensus         3 ~~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~   81 (249)
T PRK09135          3 TDSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDALPELVAACVA   81 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999863 44444444443322 34688899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~  269 (328)
                      .++++|+||||||..  .+..+.+.++++.++++|+.|++++.+++.|+|.+.       +++.+..+.++...|+++|+
T Consensus        82 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~  161 (249)
T PRK09135         82 AFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAERPLKGYPVYCAAKA  161 (249)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcCCCCCchhHHHHHH
Confidence            999999999999974  344567788999999999999999999999998764       22233445567789999999


Q ss_pred             cccCCCCcccc------ccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhccccccccccccc
Q psy4246         270 DLSLPVSGSYF------NNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVV  327 (328)
Q Consensus       270 al~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~  327 (328)
                      +++ .+...+.      .+++...|+...++................ .++.++++++|++.++.
T Consensus       162 ~~~-~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~  225 (249)
T PRK09135        162 ALE-MLTRSLALELAPEVRVNAVAPGAILWPEDGNSFDEEARQAILARTPLKRIGTPEDIAEAVR  225 (249)
T ss_pred             HHH-HHHHHHHHHHCCCCeEEEEEeccccCccccccCCHHHHHHHHhcCCcCCCcCHHHHHHHHH
Confidence            988 5553322      233334444433332110000111111111 12567888999988763

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.89  E-value=3.1e-23  Score=185.69  Aligned_cols=201  Identities=20%  Similarity=0.184  Sum_probs=151.3

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      ++++|||||+||||.++++.|+++|++|++++|+.+..++..+++...  +.++.++.+|++|.++++++++++.+++++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   78 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH--GGEALVVPTDVSDAEACERLIEAAVARFGG   78 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999988777776666554  457889999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCC-ChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCcccc
Q psy4246         203 LNILVLNAGVF--GLGFSH-TEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +|+||||||..  ....+. +.+++.+.+++|+.+++.+++.+.++|.+.       ||..+..+.++...|+++|++++
T Consensus        79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~  158 (263)
T PRK06181         79 IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVPTRSGYAASKHALH  158 (263)
T ss_pred             CCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCCCccHHHHHHHHHH
Confidence            99999999974  334566 888999999999999999999999998754       44445556667889999999988


Q ss_pred             CCCCcc-------ccccCccCCCCcccCCHHHHHHHHHH-HHHHHHHH--HhcccccccccccccC
Q psy4246         273 LPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKL-SEEMIQSV--VSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~r~g~p~dia~~v~F  328 (328)
                       .+...       +..+++.+.|+...++...  ..... .+......  ..++.+|+|+|..++|
T Consensus       159 -~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~  221 (263)
T PRK06181        159 -GFFDSLRIELADDGVAVTVVCPGFVATDIRK--RALDGDGKPLGKSPMQESKIMSAEECAEAILP  221 (263)
T ss_pred             -HHHHHHHHHhhhcCceEEEEecCccccCcch--hhccccccccccccccccCCCCHHHHHHHHHH
Confidence             65532       2233444555554443221  11100 00000011  2478899999887653

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.89  E-value=2.2e-22  Score=185.68  Aligned_cols=129  Identities=33%  Similarity=0.526  Sum_probs=114.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++++|++|||||++|||+++|+.|+++|++|++++|+.++++++..++..  .+.++.++.+|++|.++++++++++.+
T Consensus         2 ~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~   79 (322)
T PRK07453          2 SQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI--PPDSYTIIHIDLGDLDSVRRFVDDFRA   79 (322)
T ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc--cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            356799999999999999999999999999999999998888777777642  245788999999999999999999888


Q ss_pred             hcCCccEEEEccccCCC---CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q psy4246         199 KFRSLNILVLNAGVFGL---GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG  249 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  249 (328)
                      .+++||+||||||+..+   ..+.+.++|+.+|++|+.|+++++++++|+|++.
T Consensus        80 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  133 (322)
T PRK07453         80 LGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKS  133 (322)
T ss_pred             hCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence            88899999999998643   2467889999999999999999999999999764

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.89  E-value=5.8e-23  Score=181.89  Aligned_cols=202  Identities=15%  Similarity=0.121  Sum_probs=147.6

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      |++|||||+||||.+++++|+++|++|+++ .|+.+..++...++...  +.++.++.+|++|+++++++++++.+.+++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   79 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA--GGKAFVLQADISDENQVVAMFTAIDQHDEP   79 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhC--CCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            689999999999999999999999999874 67777666666666543  457888999999999999999999999999


Q ss_pred             ccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----------cccceeccccc-chhhhcc
Q psy4246         203 LNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----------AKLFARQQGAA-TSIYCAT  267 (328)
Q Consensus       203 id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----------ss~~~~~~~~~-~~~y~as  267 (328)
                      +|+||||||..   .+..+.+.++|+.++++|+.+++++++.+++.|.+.           ||..+..+.++ ...|+++
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~~~~~Y~~s  159 (247)
T PRK09730         80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGEYVDYAAS  159 (247)
T ss_pred             CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCCcccchHhH
Confidence            99999999974   345677889999999999999999999999998753           44444444454 3679999


Q ss_pred             CccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .+...+       ..++....|+...++................ .++++.+.|+|+|..++|
T Consensus       160 K~~~~-~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  227 (247)
T PRK09730        160 KGAID-TLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQPEEVAQAIVW  227 (247)
T ss_pred             HHHHH-HHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence            99988 555322       2333444455443332110000011111111 136678899999988764

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.89  E-value=6.3e-23  Score=181.55  Aligned_cols=204  Identities=22%  Similarity=0.257  Sum_probs=151.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +|.+|++|||||++|||.++++.|+++|++|+++ +|+.+..+.....+...  +.++.++.+|++++++++++++.+.+
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVE   79 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            5778999999999999999999999999999998 99887777666666543  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||..  .+..+.+.+++++++++|+.+++.+++.+++.|.+.        ||..+..+.+....|+++|
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~y~~sK  159 (247)
T PRK05565         80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASCEVLYSASK  159 (247)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCCCccHHHHHH
Confidence            999999999999985  345677889999999999999999999999999765        4444455566778899999


Q ss_pred             ccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHH-HHHHhccccccccccccc
Q psy4246         269 LDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMI-QSVVSTWLEETTERGEVV  327 (328)
Q Consensus       269 ~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~g~p~dia~~v~  327 (328)
                      ++++ .+...+       ..+++.+.|+...++.... .......... ....+++.+|+|++..++
T Consensus       160 ~a~~-~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~va~~~~  224 (247)
T PRK05565        160 GAVN-AFTKALAKELAPSGIRVNAVAPGAIDTEMWSS-FSEEDKEGLAEEIPLGRLGKPEEIAKVVL  224 (247)
T ss_pred             HHHH-HHHHHHHHHHHHcCeEEEEEEECCccCccccc-cChHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence            9887 544221       2233344454443321110 0001111111 112567788888887654

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.89  E-value=4e-23  Score=183.31  Aligned_cols=202  Identities=20%  Similarity=0.153  Sum_probs=143.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh-HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD-KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +|++|+++||||+||||.++++.|+++|++|++++|+.+ ..+....++...  +.++.++.+|++++++++++++++.+
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEESVAALMDTARE   80 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999998753 445555555443  45788899999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcccc------cee-----cccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL------FAR-----QQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~------~~~-----~~~~~~~~y~as  267 (328)
                      .++++|+||||||.... .   ...+...+++|+.|++++++.+.|+|.+.+++      .+.     ...+....|+++
T Consensus        81 ~~~~~d~vi~~ag~~~~-~---~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~~~~Y~~s  156 (248)
T PRK07806         81 EFGGLDALVLNASGGME-S---GMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPTVKTMPEYEPVARS  156 (248)
T ss_pred             hCCCCcEEEECCCCCCC-C---CCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCccccCCccccHHHHH
Confidence            99999999999987421 1   12356789999999999999999998754222      111     122345789999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHH--HHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEA--LATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .+...       +..+++.+.|+...+...  +..+.....-.....+++|+++|+|+|.+++|
T Consensus       157 K~a~e-~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  225 (248)
T PRK07806        157 KRAGE-DALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAIEARREAAGKLYTVSEFAAEVAR  225 (248)
T ss_pred             HHHHH-HHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCCHHHHHHHHhhhcccCCHHHHHHHHHH
Confidence            99998 55533       234455555554433211  11111110001112347899999999998765

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.89  E-value=6.5e-23  Score=181.69  Aligned_cols=203  Identities=18%  Similarity=0.191  Sum_probs=148.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC----hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS----LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~----~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +|.+|+++||||++|||+++|+.|+++|++|++++|.    .+..++...++...  +.++.++.+|+++.++++++++.
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence            4678999999999999999999999999999997653    34444444444433  45788999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHH-HHHHhc--------cccceecccccchhh
Q psy4246         196 YQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLE-NALIKG--------AKLFARQQGAATSIY  264 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~-~~~~~~--------ss~~~~~~~~~~~~y  264 (328)
                      +.+.++++|+||||||..  .++.+.+.++|++++++|+.+++.+++++. +.|.+.        ||..+..+.++...|
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y  160 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVNY  160 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCCCCCchh
Confidence            999999999999999985  355678899999999999999999999999 555543        555555566778899


Q ss_pred             hccCccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|+++. .+...+       ..++..+.|+...+.........   +.... .+.++++.++|+|..++|
T Consensus       161 ~~sK~a~~-~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~---~~~~~~~~~~~~~~~~~va~~~~~  228 (249)
T PRK12827        161 AASKAGLI-GLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT---EHLLNPVPVQRLGEPDEVAALVAF  228 (249)
T ss_pred             HHHHHHHH-HHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH---HHHHhhCCCcCCcCHHHHHHHHHH
Confidence            99999887 554322       23334445555444321111100   11111 125677888888876543

>KOG1014|consensus

Probab=99.88  E-value=5.8e-23  Score=181.01  Aligned_cols=152  Identities=23%  Similarity=0.220  Sum_probs=130.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      -|+.++||||+.|||++.|++||++|.+|++++|++++++.+.+||.+.+. .++.++.+|.++.+.+-+-+.+.... .
T Consensus        48 ~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~~ye~i~~~l~~-~  125 (312)
T KOG1014|consen   48 LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDEVYEKLLEKLAG-L  125 (312)
T ss_pred             cCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-cEEEEEEEecCCCchhHHHHHHHhcC-C
Confidence            358999999999999999999999999999999999999999999999874 89999999999988733322222221 3


Q ss_pred             CccEEEEccccCC----CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         202 SLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       202 ~id~lvnnAg~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      .|-+||||+|+..    .+.+.+...+...+++|+.++..+++.++|.|.++        ||..+..+.+..+.|+++|+
T Consensus       126 ~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~~s~ysasK~  205 (312)
T KOG1014|consen  126 DVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPLLSVYSASKA  205 (312)
T ss_pred             ceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChhHHHHHHHHH
Confidence            6788999999853    24577777899999999999999999999999986        77788999999999999999


Q ss_pred             cccCCCC
Q psy4246         270 DLSLPVS  276 (328)
Q Consensus       270 al~~~~~  276 (328)
                      .+. .++
T Consensus       206 ~v~-~~S  211 (312)
T KOG1014|consen  206 FVD-FFS  211 (312)
T ss_pred             HHH-HHH
Confidence            887 666

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.5e-22  Score=178.06  Aligned_cols=154  Identities=21%  Similarity=0.276  Sum_probs=130.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+++++|++|||||+++||.++++.|+++|++|++++|+.++..+...++...    .+..+.+|++|.++++++++++.
T Consensus         2 ~~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~   77 (239)
T PRK12828          2 EHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD----ALRIGGIDLVDPQAARRAVDEVN   77 (239)
T ss_pred             CCCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc----CceEEEeecCCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999987766665555432    45677899999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.++++|+||||||..  ....+.+.+++++.+++|+.+++.++++++++|.+.        ||+.+..+.+....|+++
T Consensus        78 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~s  157 (239)
T PRK12828         78 RQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGPGMGAYAAA  157 (239)
T ss_pred             HHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCCCcchhHHH
Confidence            9999999999999975  334567889999999999999999999999998764        555555556677889999


Q ss_pred             CccccCCCC
Q psy4246         268 SLDLSLPVS  276 (328)
Q Consensus       268 k~al~~~~~  276 (328)
                      |+++. .+.
T Consensus       158 k~a~~-~~~  165 (239)
T PRK12828        158 KAGVA-RLT  165 (239)
T ss_pred             HHHHH-HHH
Confidence            99876 444

>PRK08324 short chain dehydrogenase; Validated

Probab=99.88  E-value=1.8e-22  Score=203.40  Aligned_cols=206  Identities=22%  Similarity=0.265  Sum_probs=158.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ..+.||++|||||+||||+++|+.|+++|++|++++|+.+.++....++...   .++.++.+|+++.++++++++++.+
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~  494 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAAL  494 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999988877766665432   4788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .+|++|+||||||+.  .++.+.+.++|+.++++|+.|++.+++.+.+.|+++         ||..+..+.++...|+++
T Consensus       495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~~~~Y~as  574 (681)
T PRK08324        495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPNFGAYGAA  574 (681)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCCCcHHHHHH
Confidence            999999999999985  456788999999999999999999999999999873         444556667788999999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcc--cCC---HHHH-HH--HHHH-HH---HHH--HHHHhcccccccccccc
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKA--AQD---EALA-TK--LWKL-SE---EMI--QSVVSTWLEETTERGEV  326 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~--~~~---~~~~-~~--~~~~-~~---~~~--~~~~~r~g~p~dia~~v  326 (328)
                      |++++ .+...       +..+++.+.|+..  .+.   .... ..  .... .+   +..  ...++++..|+|||.++
T Consensus       575 Kaa~~-~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~  653 (681)
T PRK08324        575 KAAEL-HLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAV  653 (681)
T ss_pred             HHHHH-HHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHH
Confidence            99998 66533       2345555555544  221   1100 00  0000 01   111  11267899999999887


Q ss_pred             cC
Q psy4246         327 VF  328 (328)
Q Consensus       327 ~F  328 (328)
                      +|
T Consensus       654 ~~  655 (681)
T PRK08324        654 VF  655 (681)
T ss_pred             HH
Confidence            64

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.88  E-value=3.1e-22  Score=176.93  Aligned_cols=204  Identities=21%  Similarity=0.268  Sum_probs=149.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +|++|++|||||+|+||.++++.|+++|++|+++.|+... .+....++...  +.++..+.+|+++.+++.++++++.+
T Consensus         2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999888876543 44444444433  56788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||..  .+..+.+.+.+++++++|+.+++.+.+++++.+.+.        +|..+..+.++...|+++|
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~~~~~y~~sk  159 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQANYAASK  159 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCCCCchhHHHH
Confidence            999999999999985  344677889999999999999999999999998764        4445555667788899999


Q ss_pred             ccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhccccccccccccc
Q psy4246         269 LDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVV  327 (328)
Q Consensus       269 ~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~  327 (328)
                      ++++ .+...+       ..+++...|+...++.... ......+..... +.++++.|+|+|.++.
T Consensus       160 ~a~~-~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~va~~~~  224 (248)
T PRK05557        160 AGVI-GFTKSLARELASRGITVNAVAPGFIETDMTDA-LPEDVKEAILAQIPLGRLGQPEEIASAVA  224 (248)
T ss_pred             HHHH-HHHHHHHHHhhhhCeEEEEEecCccCCccccc-cChHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence            9887 544322       1233334455443221110 011111122111 2577889999987764

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.88  E-value=4.4e-22  Score=175.78  Aligned_cols=204  Identities=20%  Similarity=0.243  Sum_probs=150.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|.+|++|||||+++||.++++.|+++|++|++++|+.++.+....++...  +.++.++.+|++|++++.++++++...
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA--GGEARVLVFDVSDEAAVRALIEAAVEA   79 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999988777666666543  567889999999999999999999988


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ++++|++|||||..  .+..+.+.++++..+++|+.+++++++.++++|.+.        ||..+..+......|+.+|+
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~~~~~y~~sk~  159 (246)
T PRK05653         80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNPGQTNYSAAKA  159 (246)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCCCCcHhHhHHH
Confidence            99999999999985  345677889999999999999999999999998654        44444455566788999999


Q ss_pred             cccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHH-HHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKL-SEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .+...+       ..+...+.|+....+...  .+... .+.... .+++++.+++|++..++|
T Consensus       160 ~~~-~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  224 (246)
T PRK05653        160 GVI-GFTKALALELASRGITVNAVAPGFIDTDMTE--GLPEEVKAEILKEIPLGRLGQPEEVANAVAF  224 (246)
T ss_pred             HHH-HHHHHHHHHHhhcCeEEEEEEeCCcCCcchh--hhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            876 444322       122333344433332211  11111 111111 124677888888876653

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.88  E-value=5.6e-22  Score=177.37  Aligned_cols=205  Identities=20%  Similarity=0.213  Sum_probs=151.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..++++|++|||||++|||++++++|+++|++|++++|+.+..++..+++.    +.++.++.+|++|+++++.+++++.
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~   81 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP----GAKVTATVADVADPAQVERVFDTAV   81 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh----cCceEEEEccCCCHHHHHHHHHHHH
Confidence            345899999999999999999999999999999999998776655544432    2267889999999999999999999


Q ss_pred             HhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhh
Q psy4246         198 KKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYC  265 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~  265 (328)
                      +.++++|+||||||..   ......+.++|.+++++|+.+++.+++.+++.|...         ||..+..+.+....|+
T Consensus        82 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~~~~y~  161 (264)
T PRK12829         82 ERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPGRTPYA  161 (264)
T ss_pred             HHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCCCCchhH
Confidence            9999999999999975   234677889999999999999999999999988664         3334444556677899


Q ss_pred             ccCccccCCCCccc-------cccCccCCCCcccCCHHHHHH----------HHHHHHHHHHH-HHhccccccccccccc
Q psy4246         266 ATSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATK----------LWKLSEEMIQS-VVSTWLEETTERGEVV  327 (328)
Q Consensus       266 ask~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~r~g~p~dia~~v~  327 (328)
                      ++|++++ .+...+       ...++...|+...++......          ........... +.+++..++|+|.+++
T Consensus       162 ~~K~a~~-~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~  240 (264)
T PRK12829        162 ASKWAVV-GLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKISLGRMVEPEDIAATAL  240 (264)
T ss_pred             HHHHHHH-HHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence            9999988 554332       234444556655443321110          00111111111 2457889999988754

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.88  E-value=4.5e-22  Score=200.46  Aligned_cols=173  Identities=20%  Similarity=0.182  Sum_probs=143.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|+||+++||||++|||+++|+.|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++++.+
T Consensus       367 ~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~  444 (657)
T PRK07201        367 GPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK--GGTAHAYTCDLTDSAAVDHTVKDILA  444 (657)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            3688999999999999999999999999999999999998888877777554  55789999999999999999999999


Q ss_pred             hcCCccEEEEccccCC--CCCCC--ChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         199 KFRSLNILVLNAGVFG--LGFSH--TEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~--~~~~~--~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      .+|++|+||||||+..  ...+.  ..+++++++++|+.|++++++.++|+|++.        ||+.+..+.++...|++
T Consensus       445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~  524 (657)
T PRK07201        445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAPRFSAYVA  524 (657)
T ss_pred             hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCcchHHH
Confidence            9999999999999742  22222  257899999999999999999999999865        55556666677889999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQD  294 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~  294 (328)
                      +|++++ +++..       +..+++.+.|+...++
T Consensus       525 sK~a~~-~~~~~la~e~~~~~i~v~~v~pg~v~T~  558 (657)
T PRK07201        525 SKAALD-AFSDVAASETLSDGITFTTIHMPLVRTP  558 (657)
T ss_pred             HHHHHH-HHHHHHHHHHHhhCCcEEEEECCcCccc
Confidence            999998 66632       3345555666655443

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.3e-22  Score=178.07  Aligned_cols=192  Identities=16%  Similarity=0.171  Sum_probs=141.1

Q ss_pred             EEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccEE
Q psy4246         127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNIL  206 (328)
Q Consensus       127 lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~l  206 (328)
                      |||||++|||+++++.|+++|++|++++|+.+.++....++..   +.++.++.+|++|++++++++++    .+++|+|
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~----~~~id~l   73 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAE----AGPFDHV   73 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHh----cCCCCEE
Confidence            6999999999999999999999999999998777666555531   45788899999999999888875    4789999


Q ss_pred             EEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCccccCCCCcc
Q psy4246         207 VLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLDLSLPVSGS  278 (328)
Q Consensus       207 vnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~al~~~~~g~  278 (328)
                      |||||..  .++.+.+.+++++++++|+.+++++++  .+.|.+.      +|+.+..+.+....|+++|++++ ++...
T Consensus        74 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK~a~~-~~~~~  150 (230)
T PRK07041         74 VITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIAPGGSLTFVSGFAAVRPSASGVLQGAINAALE-ALARG  150 (230)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhcCCeEEEEECchhhcCCCCcchHHHHHHHHHH-HHHHH
Confidence            9999985  345677899999999999999999999  4556543      44555566678889999999998 66543


Q ss_pred             cc-----ccCccCCCCcccCCHHHH---HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         279 YF-----NNCCRCPPSKAAQDEALA---TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       279 ~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +.     .+++...|+...++....   +........... .+++|+++|+|||.+++|
T Consensus       151 la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  209 (230)
T PRK07041        151 LALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPARRVGQPEDVANAILF  209 (230)
T ss_pred             HHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            22     234455566554432110   000111111111 126788999999988764

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.88  E-value=3.5e-22  Score=178.23  Aligned_cols=200  Identities=17%  Similarity=0.137  Sum_probs=149.3

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||++|||+++|+.|+++|++|++++|+.+.++....++.    +.++.++.+|++|.+++..+++++.+++++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG----DARFVPVACDLTDAASLAAALANAAAERGP   77 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999999887776665552    347889999999999999999999999999


Q ss_pred             ccEEEEccccCC--CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         203 LNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       203 id~lvnnAg~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +|++|||||...  +..+.+.++|...+++|+.+++.+.+++++.+.+.        +|..+.. ..+...|+++|++++
T Consensus        78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-~~~~~~y~~sK~a~~  156 (257)
T PRK07074         78 VDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMA-ALGHPAYSAAKAGLI  156 (257)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcC-CCCCcccHHHHHHHH
Confidence            999999999853  45577889999999999999999999999998764        3322222 234568999999988


Q ss_pred             CCCCccc-------cccCccCCCCcccCCHHHHH--HHHHHHHHHH-HHHHhcccccccccccccC
Q psy4246         273 LPVSGSY-------FNNCCRCPPSKAAQDEALAT--KLWKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~g~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                       .+...+       ..+++...|+...+......  .......... ..+++++..++|++.+++|
T Consensus       157 -~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~  221 (257)
T PRK07074        157 -HYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKWYPLQDFATPDDVANAVLF  221 (257)
T ss_pred             -HHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence             666433       34445555654444321110  0011111111 1136789999999887754

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.87  E-value=2.2e-22  Score=178.52  Aligned_cols=138  Identities=19%  Similarity=0.225  Sum_probs=107.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ..|++|++|||||++|||+++|++|+++|++|++++|+.....+   ... .  + ...++.+|++|.+++++       
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~---~~~-~--~-~~~~~~~D~~~~~~~~~-------   75 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSE---SND-E--S-PNEWIKWECGKEESLDK-------   75 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhh---hhc-c--C-CCeEEEeeCCCHHHHHH-------
Confidence            45789999999999999999999999999999999998632111   111 1  1 22568999999987653       


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----c-------ccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----A-------KLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----s-------s~~~~~~~~~~~~y~as  267 (328)
                      .++++|+||||||+. +..+.+.++|++++++|+.|+++++++++|+|.++    +       |..+.. .+....|++|
T Consensus        76 ~~~~iDilVnnAG~~-~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~-~~~~~~Y~aS  153 (245)
T PRK12367         76 QLASLDVLILNHGIN-PGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ-PALSPSYEIS  153 (245)
T ss_pred             hcCCCCEEEECCccC-CcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC-CCCCchhHHH
Confidence            457899999999975 23457889999999999999999999999999762    1       112222 2346679999


Q ss_pred             Ccccc
Q psy4246         268 SLDLS  272 (328)
Q Consensus       268 k~al~  272 (328)
                      |+++.
T Consensus       154 Kaal~  158 (245)
T PRK12367        154 KRLIG  158 (245)
T ss_pred             HHHHH
Confidence            99985

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.87  E-value=5.6e-22  Score=175.54  Aligned_cols=193  Identities=21%  Similarity=0.213  Sum_probs=143.5

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH-HHHhc---
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE-YQKKF---  200 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~-~~~~~---  200 (328)
                      ++|||||+||||+++|++|+++|++|++++|+.+..  .    .. ..+.++.++.+|+++.+++++++++ +.+.+   
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~----~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~   75 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L----AA-AAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDG   75 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h----hh-ccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccC
Confidence            699999999999999999999999999999986531  1    11 1245788999999999999998877 55555   


Q ss_pred             CCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         201 RSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       201 g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +++|++|||||..   .+..+.+.++|++++++|+.|++.+++.+++.|.+.        ||+.+..+.++...|+++|+
T Consensus        76 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~  155 (243)
T PRK07023         76 ASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYAGWSVYCATKA  155 (243)
T ss_pred             CCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCCCchHHHHHHH
Confidence            4799999999985   345677899999999999999999999999999754        55566667778899999999


Q ss_pred             cccCCCCcc------ccccCccCCCCcccCCHHHHHH-----HHHHHHHHHHH-HHhccccccccccc
Q psy4246         270 DLSLPVSGS------YFNNCCRCPPSKAAQDEALATK-----LWKLSEEMIQS-VVSTWLEETTERGE  325 (328)
Q Consensus       270 al~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~r~g~p~dia~~  325 (328)
                      +++ .+...      +..+++.+.|+...++......     .+...+..... ..+|+++|+|+|..
T Consensus       156 a~~-~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~  222 (243)
T PRK07023        156 ALD-HHARAVALDANRALRIVSLAPGVVDTGMQATIRATDEERFPMRERFRELKASGALSTPEDAARR  222 (243)
T ss_pred             HHH-HHHHHHHhcCCCCcEEEEecCCccccHHHHHHHhcccccchHHHHHHHhhhcCCCCCHHHHHHH
Confidence            988 66642      2344555666665443211000     01111112221 26899999999983

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.87  E-value=5.9e-22  Score=175.30  Aligned_cols=196  Identities=21%  Similarity=0.300  Sum_probs=144.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|+++||||++|||.++++.|+++|++|++++|+.+++++...+.       .+.++.+|+++.++++++++.   
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~---   74 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-------GCEPLRLDVGDDAAIRAALAA---   74 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCeEEEecCCCHHHHHHHHHH---
Confidence            4688999999999999999999999999999999999987665443322       345788999999988887765   


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                       ++++|+||||||..  .+..+.+.++|++++++|+.+++.+++++++.+.+.         ||..+..+.+....|+++
T Consensus        75 -~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~s  153 (245)
T PRK07060         75 -AGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPDHLAYCAS  153 (245)
T ss_pred             -hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCCCcHhHHH
Confidence             47899999999985  344567889999999999999999999999998753         444455566778899999


Q ss_pred             CccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHH---HHHHHH-HHHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWK---LSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .+...+       ..+++.+.|+...++..  ...|.   ..+.+. ..+.+++..|+|+|.+++|
T Consensus       154 K~a~~-~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~  222 (245)
T PRK07060        154 KAALD-AITRVLCVELGPHGIRVNSVNPTVTLTPMA--AEAWSDPQKSGPMLAAIPLGRFAEVDDVAAPILF  222 (245)
T ss_pred             HHHHH-HHHHHHHHHHhhhCeEEEEEeeCCCCCchh--hhhccCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99988 655322       23444455554443321  11111   111111 1136889999999988764

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=99.87  E-value=1.5e-21  Score=164.28  Aligned_cols=206  Identities=12%  Similarity=0.150  Sum_probs=168.0

Q ss_pred             CCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..|+||++||+|-+  ++|+..||+.|.++||+++.++.++ +++..++++.+..  .....++||+++.++++++++++
T Consensus         2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~--~s~~v~~cDV~~d~~i~~~f~~i   78 (259)
T COG0623           2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEEL--GSDLVLPCDVTNDESIDALFATI   78 (259)
T ss_pred             CccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhc--cCCeEEecCCCCHHHHHHHHHHH
Confidence            46899999999986  6999999999999999999999886 6777777776653  24677999999999999999999


Q ss_pred             HHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccccce------ecccccchhh
Q psy4246         197 QKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA------RQQGAATSIY  264 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~~~------~~~~~~~~~y  264 (328)
                      .+++|+||+|||+-|+.      +.+.+.+.|.|...+++..++...+++++.|.|...+|+..      ....|.+.+-
T Consensus        79 ~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvM  158 (259)
T COG0623          79 KKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVM  158 (259)
T ss_pred             HHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchh
Confidence            99999999999999974      56778999999999999999999999999999999988833      4556778888


Q ss_pred             hccCccccCCCC-------ccccccCccCCCCcccCCHHHHHH-HHHHHHHHH-HHHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATK-LWKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      +.+|++|+ ...       |...+++|.+..+|..+.....-. +....+... ..+++|-.++|||.+.++|
T Consensus       159 GvAKAaLE-asvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl~r~vt~eeVG~tA~f  230 (259)
T COG0623         159 GVAKAALE-ASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPLRRNVTIEEVGNTAAF  230 (259)
T ss_pred             HHHHHHHH-HHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCccCCCCHHHhhhhHHH
Confidence            99999999 433       677888998888887775432211 111122211 1259999999999999877

>KOG1210|consensus

Probab=99.87  E-value=1.7e-22  Score=177.74  Aligned_cols=152  Identities=21%  Similarity=0.216  Sum_probs=137.7

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      +.++||||++|||+++|+.+..+|++|.++.|+.+++.+++.++.-...-..+.+..+|+.|.+++..+++++...++.+
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~  113 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI  113 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence            68999999999999999999999999999999999999998888655433347799999999999999999999999999


Q ss_pred             cEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCcccc
Q psy4246         204 NILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       204 d~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      |.||||||..  +.+.+.+.+.++.++++|++|.++++++.++.|++.         +|..+..+..+.+.|+++|+|+.
T Consensus       114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~GysaYs~sK~alr  193 (331)
T KOG1210|consen  114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALR  193 (331)
T ss_pred             ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcccccccccHHHHHH
Confidence            9999999974  668899999999999999999999999999999987         44567888889999999999988


Q ss_pred             CCCC
Q psy4246         273 LPVS  276 (328)
Q Consensus       273 ~~~~  276 (328)
                       ++.
T Consensus       194 -gLa  196 (331)
T KOG1210|consen  194 -GLA  196 (331)
T ss_pred             -HHH
Confidence             655

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.86  E-value=6.9e-22  Score=173.73  Aligned_cols=192  Identities=16%  Similarity=0.119  Sum_probs=142.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |.+|+++||||++|||+++++.|+++|++|++++|+.+.      .    .   ...++.+|+++.++++++++++.+.+
T Consensus         1 ~~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~------~----~---~~~~~~~D~~~~~~~~~~~~~~~~~~   67 (234)
T PRK07577          1 MSSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID------D----F---PGELFACDLADIEQTAATLAQINEIH   67 (234)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc------c----c---CceEEEeeCCCHHHHHHHHHHHHHhC
Confidence            357899999999999999999999999999999998653      0    1   12467899999999999999998876


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~a  270 (328)
                       ++|+||||||+.  .++.+.+.+++++++++|+.+++.+++.++|.|++.        ||. +..+.+....|+++|++
T Consensus        68 -~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~-~~~~~~~~~~Y~~sK~a  145 (234)
T PRK07577         68 -PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSR-AIFGALDRTSYSAAKSA  145 (234)
T ss_pred             -CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccc-cccCCCCchHHHHHHHH
Confidence             699999999985  345567889999999999999999999999999765        332 23355678899999999


Q ss_pred             ccCCCCcc-------ccccCccCCCCcccCCHHHHH-H-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         271 LSLPVSGS-------YFNNCCRCPPSKAAQDEALAT-K-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++ ++...       +..+++.+.|+...++..... . .......... .+++++.+|+|+|.+++|
T Consensus       146 ~~-~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  212 (234)
T PRK07577        146 LV-GCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIPMRRLGTPEEVAAAIAF  212 (234)
T ss_pred             HH-HHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            98 66533       234555566665554432110 0 0011111111 236778899999987653

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.86  E-value=5.7e-21  Score=168.22  Aligned_cols=153  Identities=23%  Similarity=0.333  Sum_probs=130.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+.+++++||||+|+||.+++++|+++|++|++++|+.+.+.+..+++...   .++.++.+|+++.++++.+++++.+.
T Consensus         3 ~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (237)
T PRK07326          3 SLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAA   79 (237)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988877776666532   46888999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCcc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      ++++|+||||||..  +++.+.+.+++++++++|+.+++.+++++++.|.+.       ||+.+..+......|+++|++
T Consensus        80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~sk~a  159 (237)
T PRK07326         80 FGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFAGGAAYNASKFG  159 (237)
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCCCCchHHHHHHH
Confidence            99999999999975  345678899999999999999999999999998543       454545555667789999998


Q ss_pred             ccCCCC
Q psy4246         271 LSLPVS  276 (328)
Q Consensus       271 l~~~~~  276 (328)
                      +. .+.
T Consensus       160 ~~-~~~  164 (237)
T PRK07326        160 LV-GFS  164 (237)
T ss_pred             HH-HHH
Confidence            77 544

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.86  E-value=2.4e-21  Score=171.28  Aligned_cols=205  Identities=20%  Similarity=0.185  Sum_probs=146.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh-HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD-KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++++|++|||||+|+||.++++.|+++|++|+++.|+.. ..+.....+...  +.++.++.+|+++.++++++++++.+
T Consensus         3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~   80 (249)
T PRK12825          3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAALEAAVAAAVE   80 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHHHHHHHHHHH
Confidence            466789999999999999999999999999888666544 333444444333  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|++|||||..  .++.+.+.+++++.+++|+.+++++++.+++++.+.        ||..+..+..+...|+++|
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~y~~sK  160 (249)
T PRK12825         81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWPGRSNYAAAK  160 (249)
T ss_pred             HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCCchHHHHHH
Confidence            999999999999975  334567889999999999999999999999998764        5555555666778899999


Q ss_pred             ccccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q psy4246         269 LDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVV  327 (328)
Q Consensus       269 ~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~  327 (328)
                      ++++ .+...+       ..+.....|+...++.................+++++..++|++..+.
T Consensus       161 ~~~~-~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~  225 (249)
T PRK12825        161 AGLV-GLTKALARELAEYGITVNMVAPGDIDTDMKEATIEEAREAKDAETPLGRSGTPEDIARAVA  225 (249)
T ss_pred             HHHH-HHHHHHHHHHhhcCeEEEEEEECCccCCccccccchhHHhhhccCCCCCCcCHHHHHHHHH
Confidence            9887 554322       233333444433333211100000000000123667778888877654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.86  E-value=2.9e-21  Score=171.83  Aligned_cols=152  Identities=20%  Similarity=0.214  Sum_probs=129.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||+++||+++++.|+++|++|++++|+.+..+.+..++...  +.++.++.+|++|.++++.+++++.+.+++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA--GGSVIYLVADVTKEDEIADMIAAAAAEFGG   78 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999999999999988777766665443  457889999999999999999999999999


Q ss_pred             ccEEEEccccCC--CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         203 LNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       203 id~lvnnAg~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +|+||||||...  +..+.+.+++++++++|+.|++.+++.+++.|.+.        ||..+..+.+....|+++|++++
T Consensus        79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~~~~y~~sk~a~~  158 (255)
T TIGR01963        79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASPFKSAYVAAKHGLI  158 (255)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCCCCchhHHHHHHHH
Confidence            999999999853  34567888999999999999999999999998754        44444556667788999999887


Q ss_pred             CCCCc
Q psy4246         273 LPVSG  277 (328)
Q Consensus       273 ~~~~g  277 (328)
                       .++.
T Consensus       159 -~~~~  162 (255)
T TIGR01963       159 -GLTK  162 (255)
T ss_pred             -HHHH
Confidence             5553

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.86  E-value=3e-21  Score=170.71  Aligned_cols=144  Identities=18%  Similarity=0.183  Sum_probs=120.3

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      ++++||||++|||+++|++|+++|++|++++|+.+.+++...+      ..++.++.||++|.++++++++++..   .+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   72 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAALSQLPF---IP   72 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHHHHhccc---CC
Confidence            6899999999999999999999999999999998765544322      23678899999999999999887642   58


Q ss_pred             cEEEEccccCC--CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCccccCCC
Q psy4246         204 NILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLDLSLPV  275 (328)
Q Consensus       204 d~lvnnAg~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~al~~~~  275 (328)
                      |++|||||...  +..+.+.++|++++++|+.|++++++.+.|+|.+.      +|+.+..+.++...|+++|++++ ++
T Consensus        73 d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~-~~  151 (240)
T PRK06101         73 ELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELALPRAEAYGASKAAVA-YF  151 (240)
T ss_pred             CEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCCCCCchhhHHHHHHH-HH
Confidence            99999999742  23457889999999999999999999999999765      55556667778889999999998 66


Q ss_pred             Cc
Q psy4246         276 SG  277 (328)
Q Consensus       276 ~g  277 (328)
                      +.
T Consensus       152 ~~  153 (240)
T PRK06101        152 AR  153 (240)
T ss_pred             HH
Confidence            53

>KOG1611|consensus

Probab=99.86  E-value=5.2e-21  Score=160.84  Aligned_cols=173  Identities=21%  Similarity=0.264  Sum_probs=130.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHC-CCeEEE-eeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALH-GCRVIL-ACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~-~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .-|.++||||++|||+.++++|.+. |-.+++ .+|+.+++.+..+. ... ...+++.+++|+++.+++.++++++.+-
T Consensus         2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~-k~~-~d~rvHii~Ldvt~deS~~~~~~~V~~i   79 (249)
T KOG1611|consen    2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELAL-KSK-SDSRVHIIQLDVTCDESIDNFVQEVEKI   79 (249)
T ss_pred             CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHH-hhc-cCCceEEEEEecccHHHHHHHHHHHHhh
Confidence            4567999999999999999999975 555554 56777775222222 211 1569999999999999999999999987


Q ss_pred             --cCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------------------ccccee
Q psy4246         200 --FRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------------------AKLFAR  255 (328)
Q Consensus       200 --~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------------------ss~~~~  255 (328)
                        ..++|+||||||+.   ....+.+.+.|.+.+++|..|++.++|+++|++++.                   +|..+.
T Consensus        80 Vg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s  159 (249)
T KOG1611|consen   80 VGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS  159 (249)
T ss_pred             cccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc
Confidence              56899999999995   334566778899999999999999999999999886                   222222


Q ss_pred             c---ccccchhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHH
Q psy4246         256 Q---QGAATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEAL  297 (328)
Q Consensus       256 ~---~~~~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~  297 (328)
                      .   ...+..+|..||+|++ .+++.       +..-|...+|+...+|+.-
T Consensus       160 ~~~~~~~~~~AYrmSKaAlN-~f~ksls~dL~~~~ilv~sihPGwV~TDMgg  210 (249)
T KOG1611|consen  160 IGGFRPGGLSAYRMSKAALN-MFAKSLSVDLKDDHILVVSIHPGWVQTDMGG  210 (249)
T ss_pred             cCCCCCcchhhhHhhHHHHH-HHHHHhhhhhcCCcEEEEEecCCeEEcCCCC
Confidence            2   2245689999999999 65533       2333455678888777543

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.85  E-value=6.5e-21  Score=168.74  Aligned_cols=148  Identities=17%  Similarity=0.225  Sum_probs=126.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |+++||||++|||.+++++|+++|++|++++|+.++.++...++... .+.++.++++|++++++++++++++.+   .+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~   77 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-GAVAVSTHELDILDTASHAAFLDSLPA---LP   77 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-cCCeEEEEecCCCChHHHHHHHHHHhh---cC
Confidence            68999999999999999999999999999999988877766666543 356899999999999999999988765   47


Q ss_pred             cEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccccC
Q psy4246         204 NILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLSL  273 (328)
Q Consensus       204 d~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~~  273 (328)
                      |++|||||..  ....+.+.+++.+++++|+.+++++++++.|+|.+.        ||..+..+.++...|+++|+++. 
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~-  156 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRASNYVYGSAKAALT-  156 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCCCCCcccHHHHHHHH-
Confidence            9999999975  334577889999999999999999999999999864        55556666677889999999987 


Q ss_pred             CCC
Q psy4246         274 PVS  276 (328)
Q Consensus       274 ~~~  276 (328)
                      ++.
T Consensus       157 ~~~  159 (243)
T PRK07102        157 AFL  159 (243)
T ss_pred             HHH
Confidence            555

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.85  E-value=3.8e-21  Score=169.31  Aligned_cols=197  Identities=22%  Similarity=0.325  Sum_probs=145.0

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +||||++++||.++++.|+++|++|++++|+. +.++.....+...  +.++.++.+|++|.++++++++.+.+.++++|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAY--GVKALGVVCDVSDREDVKAVVEEIEEELGPID   78 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            58999999999999999999999999998875 4444444555433  45788999999999999999999999999999


Q ss_pred             EEEEccccCC--CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccccCC
Q psy4246         205 ILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLSLP  274 (328)
Q Consensus       205 ~lvnnAg~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~~~  274 (328)
                      +||||||...  ++.+.+.+.+++++++|+.+++++++.+.+++.+.        ||..+..+.+....|+++|++++ .
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~~~~~y~~~k~a~~-~  157 (239)
T TIGR01830        79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAGQANYAASKAGVI-G  157 (239)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCCCchhHHHHHHHH-H
Confidence            9999999853  34567889999999999999999999999988653        56666667778889999999887 5


Q ss_pred             CCccc-------cccCccCCCCcccCCHHHHHHHHH-HHHHHHHH-HHhccccccccccccc
Q psy4246         275 VSGSY-------FNNCCRCPPSKAAQDEALATKLWK-LSEEMIQS-VVSTWLEETTERGEVV  327 (328)
Q Consensus       275 ~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~r~g~p~dia~~v~  327 (328)
                      +...+       ...++...|+...++  +...+.. ........ ..+++++++|+|+.++
T Consensus       158 ~~~~l~~~~~~~g~~~~~i~pg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  217 (239)
T TIGR01830       158 FTKSLAKELASRNITVNAVAPGFIDTD--MTDKLSEKVKKKILSQIPLGRFGTPEEVANAVA  217 (239)
T ss_pred             HHHHHHHHHhhcCeEEEEEEECCCCCh--hhhhcChHHHHHHHhcCCcCCCcCHHHHHHHHH
Confidence            44222       222333444443332  1111111 11111111 2577889999987664

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK06720 hypothetical protein; Provisional

Probab=99.85  E-value=3.7e-20  Score=154.65  Aligned_cols=130  Identities=20%  Similarity=0.268  Sum_probs=108.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+.+++|+++||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.++.++.+|+++.++++++++++.
T Consensus        11 ~~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~v~~~~   88 (169)
T PRK06720         11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL--GGEALFVSYDMEKQGDWQRVISITL   88 (169)
T ss_pred             ccccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999988777766776543  4567789999999999999999999


Q ss_pred             HhcCCccEEEEccccCC---CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Q psy4246         198 KKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL  252 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~  252 (328)
                      +.+|++|+||||||+..   ++.+.++++ ++  .+|+.+++++++.+.++|+++..-
T Consensus        89 ~~~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~  143 (169)
T PRK06720         89 NAFSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEE  143 (169)
T ss_pred             HHcCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCE
Confidence            99999999999999852   233434444 33  778888899999999999887443

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.9e-21  Score=167.11  Aligned_cols=146  Identities=17%  Similarity=0.180  Sum_probs=120.5

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +++||||++|||+++|+.|+++ ++|++++|+..                   .+.||++|.+++++++++    ++++|
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~----~~~id   57 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-------------------DVQVDITDPASIRALFEK----VGKVD   57 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-------------------ceEecCCChHHHHHHHHh----cCCCC
Confidence            6999999999999999999999 99999998742                   368999999999988765    47999


Q ss_pred             EEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCccccCCCC
Q psy4246         205 ILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLDLSLPVS  276 (328)
Q Consensus       205 ~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~al~~~~~  276 (328)
                      +||||||..  .+..+.+.++|++++++|+.++++++++++|+|.+.      +|+.+..+.++...|+++|+++. +++
T Consensus        58 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~Y~~sK~a~~-~~~  136 (199)
T PRK07578         58 AVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPIPGGASAATVNGALE-GFV  136 (199)
T ss_pred             EEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCCCCchHHHHHHHHHH-HHH
Confidence            999999974  445678899999999999999999999999999876      44455666678899999999998 666


Q ss_pred             cc------ccccCccCCCCcccCCH
Q psy4246         277 GS------YFNNCCRCPPSKAAQDE  295 (328)
Q Consensus       277 g~------~~~~~~~~~~~~~~~~~  295 (328)
                      ..      ...+++.+.|+...++.
T Consensus       137 ~~la~e~~~gi~v~~i~Pg~v~t~~  161 (199)
T PRK07578        137 KAAALELPRGIRINVVSPTVLTESL  161 (199)
T ss_pred             HHHHHHccCCeEEEEEcCCcccCch
Confidence            42      23455566777665543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.84  E-value=1.2e-20  Score=166.33  Aligned_cols=150  Identities=15%  Similarity=0.184  Sum_probs=123.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++++|+++||||++|||.++++.|+++|++|++++|+.+.++.+..++...   .++.++.+|+++.++++++++++...
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~   78 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV   78 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999988776655555432   36788999999999999999999888


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------ccccee-cccccchhhhccCcccc
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFAR-QQGAATSIYCATSLDLS  272 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~-~~~~~~~~y~ask~al~  272 (328)
                      ++++|++|+|+|........+.++++.++++|+.+++.+.+.++|+|.+.      +|..+. .+.+....|+++|+++.
T Consensus        79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~~Y~~sK~~~~  158 (238)
T PRK05786         79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKASPDQLSYAVAKAGLA  158 (238)
T ss_pred             hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCCCCchHHHHHHHHHH
Confidence            99999999999975322223348899999999999999999999998765      332222 23345677999999886

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.84  E-value=2.9e-21  Score=170.02  Aligned_cols=182  Identities=14%  Similarity=0.129  Sum_probs=130.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++++||||++|||+++|++|+++|  ..|++.+|+....          ..+.++.+++||+++.++++++.    +.++
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~~Dls~~~~~~~~~----~~~~   66 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----------FQHDNVQWHALDVTDEAEIKQLS----EQFT   66 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----------cccCceEEEEecCCCHHHHHHHH----HhcC
Confidence            469999999999999999999985  5666666654321          11357888999999999988754    4568


Q ss_pred             CccEEEEccccCC--------CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--cccc------ee---cccccch
Q psy4246         202 SLNILVLNAGVFG--------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLF------AR---QQGAATS  262 (328)
Q Consensus       202 ~id~lvnnAg~~~--------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--ss~~------~~---~~~~~~~  262 (328)
                      ++|+||||||+..        ++.+.+.+.|.+.+++|+.+++.+++.++|.|.++  +++.      +.   .+.++..
T Consensus        67 ~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~~~~~~~~  146 (235)
T PRK09009         67 QLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISDNRLGGWY  146 (235)
T ss_pred             CCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccccCCCCCcc
Confidence            9999999999852        23567888999999999999999999999999765  2221      11   1224567


Q ss_pred             hhhccCccccCCCCccc---------cccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         263 IYCATSLDLSLPVSGSY---------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       263 ~y~ask~al~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      .|+++|+++. +++...         ..+++.+.|+...++..  ...   .   ...+.+++.+|+|+|..++|
T Consensus       147 ~Y~asK~a~~-~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~--~~~---~---~~~~~~~~~~~~~~a~~~~~  212 (235)
T PRK09009        147 SYRASKAALN-MFLKTLSIEWQRSLKHGVVLALHPGTTDTALS--KPF---Q---QNVPKGKLFTPEYVAQCLLG  212 (235)
T ss_pred             hhhhhHHHHH-HHHHHHHHHhhcccCCeEEEEEcccceecCCC--cch---h---hccccCCCCCHHHHHHHHHH
Confidence            8999999998 666322         23455566666555432  111   0   11235778899999887764

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.84  E-value=3e-20  Score=165.64  Aligned_cols=162  Identities=20%  Similarity=0.251  Sum_probs=128.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||+||||+++++.|+++|++|++++|+.+.+++........  +.++.++.+|++|++++++++.      ++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~------~~   73 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQAAE------WD   73 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHHhc------CC
Confidence            578999999999999999999999999999999987766655544433  4468889999999998877653      48


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +|+||||||+.  ++..+.+.++++..+++|+.+++.+++.+++.|.+.        ||+.+..+.++...|+++|++++
T Consensus        74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~Y~~sK~a~~  153 (257)
T PRK09291         74 VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGPFTGAYCASKHALE  153 (257)
T ss_pred             CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCCCCcchhHHHHHHHH
Confidence            99999999985  456788999999999999999999999999998765        45555556677889999999998


Q ss_pred             CCCCcc-------ccccCccCCCCcccC
Q psy4246         273 LPVSGS-------YFNNCCRCPPSKAAQ  293 (328)
Q Consensus       273 ~~~~g~-------~~~~~~~~~~~~~~~  293 (328)
                       .++..       +..+++...|+...+
T Consensus       154 -~~~~~l~~~~~~~gi~~~~v~pg~~~t  180 (257)
T PRK09291        154 -AIAEAMHAELKPFGIQVATVNPGPYLT  180 (257)
T ss_pred             -HHHHHHHHHHHhcCcEEEEEecCcccc
Confidence             55422       233444455555443

>PRK08017 oxidoreductase; Provisional

Probab=99.82  E-value=6e-20  Score=163.56  Aligned_cols=144  Identities=26%  Similarity=0.322  Sum_probs=121.7

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc-CC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF-RS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~-g~  202 (328)
                      |+++||||+||||.++++.|+++|++|++++|+.++++...    ..    .+..+.||++|.++++.+++.+.+.. ++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~----~~----~~~~~~~D~~~~~~~~~~~~~i~~~~~~~   74 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN----SL----GFTGILLDLDDPESVERAADEVIALTDNR   74 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH----hC----CCeEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            68999999999999999999999999999999987654432    11    36778999999999999999887754 78


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +|++|||||..  .+..+.+.+++++++++|+.|++++++.+++.|.+.        +|+.+..+.++...|+++|++++
T Consensus        75 ~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~~~~  154 (256)
T PRK08017         75 LYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALE  154 (256)
T ss_pred             CeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccCCCCccHHHHHHHHHH
Confidence            99999999974  355678899999999999999999999999998764        55556666778889999999988


Q ss_pred             CCCC
Q psy4246         273 LPVS  276 (328)
Q Consensus       273 ~~~~  276 (328)
                       .+.
T Consensus       155 -~~~  157 (256)
T PRK08017        155 -AWS  157 (256)
T ss_pred             -HHH
Confidence             544

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.82  E-value=6.1e-20  Score=160.72  Aligned_cols=161  Identities=19%  Similarity=0.300  Sum_probs=125.4

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |+++||||++|||.++|++|+++|++|++++|+.+..+++ .++      .++.++.+|++|+++++++++.+..  +++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~------~~~~~~~~D~~d~~~~~~~~~~~~~--~~i   72 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL-QAL------PGVHIEKLDMNDPASLDQLLQRLQG--QRF   72 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH-Hhc------cccceEEcCCCCHHHHHHHHHHhhc--CCC
Confidence            6899999999999999999999999999999997765432 111      2567788999999999999998854  589


Q ss_pred             cEEEEccccCC----CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceec---ccccchhhhccCc
Q psy4246         204 NILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQ---QGAATSIYCATSL  269 (328)
Q Consensus       204 d~lvnnAg~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~---~~~~~~~y~ask~  269 (328)
                      |+||||||+..    +..+.+.++++.++++|+.+++.+++.++|+|.+.       +|+.+..   .......|+++|+
T Consensus        73 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~~~~~~~~Y~~sK~  152 (225)
T PRK08177         73 DLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELPDGGEMPLYKASKA  152 (225)
T ss_pred             CEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccCCCCCccchHHHHH
Confidence            99999999853    34677889999999999999999999999999765       2222222   2235568999999


Q ss_pred             cccCCCCccc-------cccCccCCCCcccCC
Q psy4246         270 DLSLPVSGSY-------FNNCCRCPPSKAAQD  294 (328)
Q Consensus       270 al~~~~~g~~-------~~~~~~~~~~~~~~~  294 (328)
                      +++ .+...+       ..+++.+.|+...++
T Consensus       153 a~~-~~~~~l~~e~~~~~i~v~~i~PG~i~t~  183 (225)
T PRK08177        153 ALN-SMTRSFVAELGEPTLTVLSMHPGWVKTD  183 (225)
T ss_pred             HHH-HHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence            998 666432       244555666655444

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.81  E-value=1.8e-19  Score=169.51  Aligned_cols=143  Identities=17%  Similarity=0.243  Sum_probs=112.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +++||+++||||+||||++++++|+++|++|++++|+.+++.+..   ...  ...+..+.+|++|.+++.+.       
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~---~~~--~~~v~~v~~Dvsd~~~v~~~-------  242 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEI---NGE--DLPVKTLHWQVGQEAALAEL-------  242 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---hhc--CCCeEEEEeeCCCHHHHHHH-------
Confidence            578999999999999999999999999999999999876554322   111  23567889999998876554       


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccc------c----ceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK------L----FARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss------~----~~~~~~~~~~~y~ask~  269 (328)
                      ++++|+||||||+.. ..+.+.+++++++++|+.|+++++++++|.|+++..      +    .+....+....|++||+
T Consensus       243 l~~IDiLInnAGi~~-~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~~~~~~~~Y~ASKa  321 (406)
T PRK07424        243 LEKVDILIINHGINV-HGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEVNPAFSPLYELSKR  321 (406)
T ss_pred             hCCCCEEEECCCcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccccCCCchHHHHHHH
Confidence            368999999999853 346788999999999999999999999999976521      1    11122234567999999


Q ss_pred             cccCCCC
Q psy4246         270 DLSLPVS  276 (328)
Q Consensus       270 al~~~~~  276 (328)
                      |+. +++
T Consensus       322 Al~-~l~  327 (406)
T PRK07424        322 ALG-DLV  327 (406)
T ss_pred             HHH-HHH
Confidence            998 544

>PRK08264 short chain dehydrogenase; Validated

Probab=99.81  E-value=4.3e-19  Score=156.41  Aligned_cols=144  Identities=24%  Similarity=0.334  Sum_probs=121.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++.+|+++||||+||||+++|+.|+++|+ +|++++|+.+++++       .  +.++.++.+|++|.++++++++.  
T Consensus         2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~--~~~~~~~~~D~~~~~~~~~~~~~--   70 (238)
T PRK08264          2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------L--GPRVVPLQLDVTDPASVAAAAEA--   70 (238)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------c--CCceEEEEecCCCHHHHHHHHHh--
Confidence            457899999999999999999999999999 99999998765433       1  45788999999999998887765  


Q ss_pred             HhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                        ++++|+||||||..   .++.+.+.+++.+++++|+.+++.+++++.+.|.+.        ||..+..+.++...|++
T Consensus        71 --~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~y~~  148 (238)
T PRK08264         71 --ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFPNLGTYSA  148 (238)
T ss_pred             --cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCCCchHhHH
Confidence              47899999999983   345677899999999999999999999999998754        44455556677788999


Q ss_pred             cCccccCCCC
Q psy4246         267 TSLDLSLPVS  276 (328)
Q Consensus       267 sk~al~~~~~  276 (328)
                      +|++++ .+.
T Consensus       149 sK~a~~-~~~  157 (238)
T PRK08264        149 SKAAAW-SLT  157 (238)
T ss_pred             HHHHHH-HHH
Confidence            999987 554

>KOG1478|consensus

Probab=99.79  E-value=6.7e-19  Score=150.03  Aligned_cols=151  Identities=24%  Similarity=0.410  Sum_probs=127.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-----eEEEeeCChhHHHHHHHHHHhhCC--CCeEEEEEcccCCHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-----RVILACRSLDKANDAISKILTEKP--SAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-----~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      -.|++||||++||||+++|++|.+..-     +|++++|+.++++++...+++.+|  ..++.++.+|+++..+|.++..
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            358999999999999999999998753     578899999999999999999888  5678899999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCC----------------CC-------------CCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         195 EYQKKFRSLNILVLNAGVFG----------------LG-------------FSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~~----------------~~-------------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      ++.++|.++|.+..|||++.                +.             ...+.|++..+|+.|++|+|++.+.+.|+
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl  161 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL  161 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence            99999999999999999641                00             13477899999999999999999999999


Q ss_pred             HHhc--------cccce---------ecccccchhhhccCcccc
Q psy4246         246 LIKG--------AKLFA---------RQQGAATSIYCATSLDLS  272 (328)
Q Consensus       246 ~~~~--------ss~~~---------~~~~~~~~~y~ask~al~  272 (328)
                      +..+        ||+.+         .....+...|.+||.++.
T Consensus       162 l~~~~~~~lvwtSS~~a~kk~lsleD~q~~kg~~pY~sSKrl~D  205 (341)
T KOG1478|consen  162 LCHSDNPQLVWTSSRMARKKNLSLEDFQHSKGKEPYSSSKRLTD  205 (341)
T ss_pred             hhcCCCCeEEEEeecccccccCCHHHHhhhcCCCCcchhHHHHH
Confidence            9876        34322         223346677999988765

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.79  E-value=7.1e-19  Score=153.64  Aligned_cols=160  Identities=22%  Similarity=0.234  Sum_probs=120.7

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |+++||||++|||.+++++|+++|++|++++|+.+..+++.    ..    .+.++.+|+++.++++++++++..  +++
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~----~~----~~~~~~~D~~~~~~v~~~~~~~~~--~~~   71 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQ----AL----GAEALALDVADPASVAGLAWKLDG--EAL   71 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH----hc----cceEEEecCCCHHHHHHHHHHhcC--CCC
Confidence            68999999999999999999999999999999976654332    21    345789999999999998877642  479


Q ss_pred             cEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceeccccc---chhhhccCc
Q psy4246         204 NILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAA---TSIYCATSL  269 (328)
Q Consensus       204 d~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~---~~~y~ask~  269 (328)
                      |++|||||..    .+..+.+.++|++++++|+.+++.++++++|+|.+.       +|..+..+...   ...|+++|+
T Consensus        72 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~Y~~sK~  151 (222)
T PRK06953         72 DAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATGTTGWLYRASKA  151 (222)
T ss_pred             CEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccCCCccccHHhHH
Confidence            9999999985    234567899999999999999999999999998663       33333222221   235999999


Q ss_pred             cccCCCCcccc-----ccCccCCCCcccCC
Q psy4246         270 DLSLPVSGSYF-----NNCCRCPPSKAAQD  294 (328)
Q Consensus       270 al~~~~~g~~~-----~~~~~~~~~~~~~~  294 (328)
                      +++ .+...+.     .+++.+.|+...++
T Consensus       152 a~~-~~~~~~~~~~~~i~v~~v~Pg~i~t~  180 (222)
T PRK06953        152 ALN-DALRAASLQARHATCIALHPGWVRTD  180 (222)
T ss_pred             HHH-HHHHHHhhhccCcEEEEECCCeeecC
Confidence            988 5553321     23455666655443

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.79  E-value=6.9e-19  Score=194.14  Aligned_cols=169  Identities=19%  Similarity=0.117  Sum_probs=135.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChh------------------------------------------
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLD------------------------------------------  158 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~------------------------------------------  158 (328)
                      +|+++|||||++|||+++|++|+++ |++|++++|+..                                          
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            5899999999999999999999998 699999999820                                          


Q ss_pred             -----HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhh
Q psy4246         159 -----KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN  231 (328)
Q Consensus       159 -----~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN  231 (328)
                           .......++...  +.++.++.||++|.++++++++++.+. ++||+||||||+.  ..+.+.+.++|+++|++|
T Consensus      2076 ~~~~~ei~~~la~l~~~--G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~n 2152 (2582)
T TIGR02813      2076 VLSSLEIAQALAAFKAA--GASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLADKHIQDKTLEEFNAVYGTK 2152 (2582)
T ss_pred             cchhHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCCCCcccCCHHHHHHHHHHH
Confidence                 011112222222  568899999999999999999999877 6899999999985  456789999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCccccCCCCccc-----cccCccCCCCcccCC
Q psy4246         232 HLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLSLPVSGSY-----FNNCCRCPPSKAAQD  294 (328)
Q Consensus       232 ~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~~~~~g~~-----~~~~~~~~~~~~~~~  294 (328)
                      +.|++++++++.+.+.+.    ||+.+..+.++++.|+++|++++ .++..+     ..+++.+.++++.+.
T Consensus      2153 v~G~~~Ll~al~~~~~~~IV~~SSvag~~G~~gqs~YaaAkaaL~-~la~~la~~~~~irV~sI~wG~wdtg 2223 (2582)
T TIGR02813      2153 VDGLLSLLAALNAENIKLLALFSSAAGFYGNTGQSDYAMSNDILN-KAALQLKALNPSAKVMSFNWGPWDGG 2223 (2582)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEechhhcCCCCCcHHHHHHHHHHH-HHHHHHHHHcCCcEEEEEECCeecCC
Confidence            999999999998876554    88888899999999999999987 555221     134455566666554

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.78  E-value=4.8e-19  Score=154.76  Aligned_cols=190  Identities=23%  Similarity=0.263  Sum_probs=138.4

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      .|++|||||+++||+++++.|+++ ++|++++|+.+..++...++      ..+.++.+|++|.++++++++.+    ++
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~----~~   71 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL------PGATPFPVDLTDPEAIAAAVEQL----GR   71 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh------ccceEEecCCCCHHHHHHHHHhc----CC
Confidence            578999999999999999999999 99999999976654443222      24678899999999988877654    58


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCccccC
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLDLSL  273 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~al~~  273 (328)
                      +|+|||+||..  .+..+.+.++|.+++++|+.+++.+++.+++.|.++       ||..+..+.++...|+++|++++ 
T Consensus        72 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~~~~y~~~K~a~~-  150 (227)
T PRK08219         72 LDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRANPGWGSYAASKFALR-  150 (227)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCcCCCCchHHHHHHHHH-
Confidence            99999999985  334677889999999999999999999999998774       55555666677889999999987 


Q ss_pred             CCCcccc------ccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         274 PVSGSYF------NNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       274 ~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      .+...+.      .+++.+.|+....+.  ...+....  ......+++..++|+|.+++|
T Consensus       151 ~~~~~~~~~~~~~i~~~~i~pg~~~~~~--~~~~~~~~--~~~~~~~~~~~~~dva~~~~~  207 (227)
T PRK08219        151 ALADALREEEPGNVRVTSVHPGRTDTDM--QRGLVAQE--GGEYDPERYLRPETVAKAVRF  207 (227)
T ss_pred             HHHHHHHHHhcCCceEEEEecCCccchH--hhhhhhhh--ccccCCCCCCCHHHHHHHHHH
Confidence            5543221      333444455443321  11111100  001124678899999988754

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.76  E-value=1.8e-18  Score=146.42  Aligned_cols=149  Identities=23%  Similarity=0.299  Sum_probs=117.0

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh---hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC-RVILACRSL---DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ++|||||.+|||..+++.|+++|+ +|++++|+.   ....+..+++...  +.++.++.||++|+++++++++++.+.+
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~~~~~~~   79 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESA--GARVEYVQCDVTDPEAVAAALAQLRQRF   79 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHT--T-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhC--CCceeeeccCccCHHHHHHHHHHHHhcc
Confidence            689999999999999999999986 899999983   2344567777765  7799999999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCccccCC
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLSLP  274 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~~~  274 (328)
                      ++|+++||+||..  .++.+.+.++++.++...+.|..+|.+.+.+.-.+.    ||+.+..+.++++.|+++.+.++ .
T Consensus        80 ~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~gq~~YaaAN~~ld-a  158 (181)
T PF08659_consen   80 GPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGPGQSAYAAANAFLD-A  158 (181)
T ss_dssp             S-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-TTBHHHHHHHHHHH-H
T ss_pred             CCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCcchHhHHHHHHHHH-H
Confidence            9999999999986  556789999999999999999999998886521121    99999999999999999998887 4


Q ss_pred             CC
Q psy4246         275 VS  276 (328)
Q Consensus       275 ~~  276 (328)
                      +.
T Consensus       159 ~a  160 (181)
T PF08659_consen  159 LA  160 (181)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.75  E-value=5.2e-18  Score=141.64  Aligned_cols=150  Identities=19%  Similarity=0.222  Sum_probs=119.6

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHH---HHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDA---ISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~---~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      |+++||||++|||.++++.|+++|+ .|++++|+.+..+..   ..++...  +.++.++.+|++++++++++++.+...
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEAL--GAEVTVVACDVADRAALAAALAAIPAR   78 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999997 688888876543322   2334332  568889999999999999999999998


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCccccC
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLSL  273 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~~  273 (328)
                      ++++|+||||||+.  .+..+.+.++++.++++|+.+++++.+++.+.-...    +|..+..+..+...|+++|+++. 
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~~~~~~y~~sk~~~~-  157 (180)
T smart00822       79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGNPGQANYAAANAFLD-  157 (180)
T ss_pred             cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCCCCchhhHHHHHHHH-
Confidence            99999999999975  345678889999999999999999999884421111    55555666677888999999887 


Q ss_pred             CCC
Q psy4246         274 PVS  276 (328)
Q Consensus       274 ~~~  276 (328)
                      .+.
T Consensus       158 ~~~  160 (180)
T smart00822      158 ALA  160 (180)
T ss_pred             HHH
Confidence            554

It uses NADPH to reduce the keto group to a hydroxy group.

>KOG1204|consensus

Probab=99.71  E-value=6.2e-18  Score=142.39  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=117.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+|++|+||+|+|||..++..+..++-.....+++....+  .+.+.-.+ +........|++...-+.++++...+++|
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~v~~-gd~~v~~~g~~~e~~~l~al~e~~r~k~g   81 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLKVAY-GDDFVHVVGDITEEQLLGALREAPRKKGG   81 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceEEEe-cCCcceechHHHHHHHHHHHHhhhhhcCC
Confidence            5789999999999999998888887755443333222111  11122222 23455567788888888999999999999


Q ss_pred             CccEEEEccccCCCC-----CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         202 SLNILVLNAGVFGLG-----FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       202 ~id~lvnnAg~~~~~-----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      ..|++|||||..++.     ...+.++|.+.+++|+++.+.|.+.++|.++++         ||.++..+..+++.||++
T Consensus        82 kr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~~wa~yc~~  161 (253)
T KOG1204|consen   82 KRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSSWAAYCSS  161 (253)
T ss_pred             ceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhccccHHHHhhhh
Confidence            999999999987553     256789999999999999999999999999887         677888999999999999


Q ss_pred             Ccccc
Q psy4246         268 SLDLS  272 (328)
Q Consensus       268 k~al~  272 (328)
                      |+|.+
T Consensus       162 KaAr~  166 (253)
T KOG1204|consen  162 KAARN  166 (253)
T ss_pred             HHHHH
Confidence            99998

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.69  E-value=7.3e-18  Score=149.22  Aligned_cols=166  Identities=19%  Similarity=0.076  Sum_probs=119.6

Q ss_pred             HHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccEEEEccccCCCCCC
Q psy4246         139 TARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS  218 (328)
Q Consensus       139 ~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~  218 (328)
                      +|+.|+++|++|++++|+.++.+     +        ..++++|++|.++++++++++.   +++|+||||||+..    
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~~-----~--------~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~----   60 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGMT-----L--------DGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPG----   60 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchhh-----h--------hHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCC----
Confidence            47899999999999999876531     1        1357899999999999998774   68999999999752    


Q ss_pred             CChhHHHHHHhhhhHHHHHHHHHHHHHHHhcc------cccee---------------------------cccccchhhh
Q psy4246         219 HTEDGFETTFQVNHLAHFYLTLQLENALIKGA------KLFAR---------------------------QQGAATSIYC  265 (328)
Q Consensus       219 ~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~s------s~~~~---------------------------~~~~~~~~y~  265 (328)
                        .+.+++++++|+.+++++++.++|+|.+.+      |..+.                           .+.++...|+
T Consensus        61 --~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~  138 (241)
T PRK12428         61 --TAPVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQ  138 (241)
T ss_pred             --CCCHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHH
Confidence              245899999999999999999999997653      33332                           2345678899


Q ss_pred             ccCccccCCCCc--------cccccCccCCCCcccCCHHHH--HHHH-HHHHHHHHHHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG--------SYFNNCCRCPPSKAAQDEALA--TKLW-KLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g--------~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++.        .+..+++.+.|+...++....  .... +...+ ...+++|+++|+|+|.+++|
T Consensus       139 ~sK~a~~-~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~-~~~~~~~~~~pe~va~~~~~  210 (241)
T PRK12428        139 LSKEALI-LWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERVDS-DAKRMGRPATADEQAAVLVF  210 (241)
T ss_pred             HHHHHHH-HHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhhHhhhh-cccccCCCCCHHHHHHHHHH
Confidence            9999987 5542        234566777777766653211  0000 00011 11247899999999998875

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.65  E-value=1.2e-16  Score=154.44  Aligned_cols=197  Identities=13%  Similarity=0.036  Sum_probs=123.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhh-----C--CCCeEEEEEcccCCHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-----K--PSAQCIAMELNLCRLKSVKKF  192 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~-----~--~~~~~~~~~~Dls~~~~v~~~  192 (328)
                      ..+||++|||||+||||++++++|+++|++|++++|+.++++.+..++...     .  ...++.++.+|++|.+++.++
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            357899999999999999999999999999999999988877666554321     0  123588999999998887553


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee-ccccc-----ch
Q psy4246         193 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR-QQGAA-----TS  262 (328)
Q Consensus       193 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~-~~~~~-----~~  262 (328)
                             ++++|+||||||....    ...++...+++|+.|+.++++++...-.++    ||+.+. .+...     ..
T Consensus       157 -------LggiDiVVn~AG~~~~----~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~p~~~~~sk~  225 (576)
T PLN03209        157 -------LGNASVVICCIGASEK----EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGFPAAILNLFW  225 (576)
T ss_pred             -------hcCCCEEEEccccccc----cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCccccchhhHH
Confidence                   4689999999997521    122477889999999999999987642111    443221 11111     11


Q ss_pred             hhhccCccccCCCCccccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         263 IYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       263 ~y~ask~al~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      .|...|..++ .....+..+++++.|+...+...................++|.+.++|||.+++|
T Consensus       226 ~~~~~KraaE-~~L~~sGIrvTIVRPG~L~tp~d~~~~t~~v~~~~~d~~~gr~isreDVA~vVvf  290 (576)
T PLN03209        226 GVLCWKRKAE-EALIASGLPYTIVRPGGMERPTDAYKETHNLTLSEEDTLFGGQVSNLQVAELMAC  290 (576)
T ss_pred             HHHHHHHHHH-HHHHHcCCCEEEEECCeecCCccccccccceeeccccccCCCccCHHHHHHHHHH
Confidence            1222333333 1122334455556665443321100000000000001236788999999998876

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=99.61  E-value=6.1e-15  Score=135.87  Aligned_cols=148  Identities=15%  Similarity=0.084  Sum_probs=102.6

Q ss_pred             CCceEEEcCCCCCccHH--HHHHHHHCCCeEEEeeCChhHHH------------HHHHHHHhhCCCCeEEEEEcccCCHH
Q psy4246         122 SNYNAIVTGANTGIGFE--TARSLALHGCRVILACRSLDKAN------------DAISKILTEKPSAQCIAMELNLCRLK  187 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a--~a~~la~~Ga~Vi~~~r~~~~~~------------~~~~~l~~~~~~~~~~~~~~Dls~~~  187 (328)
                      .+|++||||+++|||.+  +|+.| ++|++|+++++..+..+            ...+.+...  +..+..+.||+++.+
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~--G~~a~~i~~DVss~E  116 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAA--GLYAKSINGDAFSDE  116 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhc--CCceEEEEcCCCCHH
Confidence            57999999999999999  89999 99999988885432211            222233222  556788999999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccCCC-------------------CC-----------------CCChhHHHHHHhhh
Q psy4246         188 SVKKFAEEYQKKFRSLNILVLNAGVFGL-------------------GF-----------------SHTEDGFETTFQVN  231 (328)
Q Consensus       188 ~v~~~~~~~~~~~g~id~lvnnAg~~~~-------------------~~-----------------~~~~~~~~~~~~vN  231 (328)
                      +++++++++.+.+|+||+||||+|....                   ..                 ..+.++++.+++|.
T Consensus       117 ~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vM  196 (398)
T PRK13656        117 IKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVM  196 (398)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhh
Confidence            9999999999999999999999997411                   10                 24556666665544


Q ss_pred             hHH---HHHHHHHHHHHHHhccccceecc------cccc--hhhhccCcccc
Q psy4246         232 HLA---HFYLTLQLENALIKGAKLFARQQ------GAAT--SIYCATSLDLS  272 (328)
Q Consensus       232 ~~g---~~~l~~~~~~~~~~~ss~~~~~~------~~~~--~~y~ask~al~  272 (328)
                      =.-   .+.=.+...+.|.+.+++.+...      .+.+  ..-+++|++|+
T Consensus       197 ggedw~~Wi~al~~a~lla~g~~~va~TY~G~~~t~p~Y~~g~mG~AKa~LE  248 (398)
T PRK13656        197 GGEDWELWIDALDEAGVLAEGAKTVAYSYIGPELTHPIYWDGTIGKAKKDLD  248 (398)
T ss_pred             ccchHHHHHHHHHhcccccCCcEEEEEecCCcceeecccCCchHHHHHHHHH
Confidence            321   12224445667777777644332      1222  24578899988

>KOG1891|consensus

Probab=99.60  E-value=7.7e-16  Score=127.64  Aligned_cols=75  Identities=31%  Similarity=0.727  Sum_probs=67.8

Q ss_pred             CCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCCccccccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccch
Q psy4246          12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVF   91 (328)
Q Consensus        12 ~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~   91 (328)
                      +.+-|||+||-..+|..||.|||+|++++|.|.||.+      +.-||.||++.+++.-.+||+|+.+++++++.|++..
T Consensus        89 sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPle------rEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~~s  162 (271)
T KOG1891|consen   89 SEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE------REGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCISS  162 (271)
T ss_pred             cccCCCCCCcceeeEecCceeEeecCCCcccccChhh------hccCCcchhhccccccceeeeecccchhhhcCCCCCC
Confidence            4456799999999999999999999999999999975      3358999999999999999999999999999999764


Q ss_pred             h
Q psy4246          92 A   92 (328)
Q Consensus        92 ~   92 (328)
                      .
T Consensus       163 ~  163 (271)
T KOG1891|consen  163 P  163 (271)
T ss_pred             C
Confidence            3

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.59  E-value=6.7e-15  Score=135.89  Aligned_cols=116  Identities=10%  Similarity=0.016  Sum_probs=91.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++|++|||||+|+||++++++|+++|++|+++.|+..........+.......++.++.+|++|.++++++++       
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-------   76 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID-------   76 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc-------
Confidence            4789999999999999999999999999999888876544332211111112468889999999998887775       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      ++|+||||||...  ...+.+.+.+++++|+.|++++++++.+.+
T Consensus        77 ~~d~vih~A~~~~--~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~  119 (325)
T PLN02989         77 GCETVFHTASPVA--ITVKTDPQVELINPAVNGTINVLRTCTKVS  119 (325)
T ss_pred             CCCEEEEeCCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5899999999753  233456678999999999999999998864

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.58  E-value=1.1e-14  Score=134.64  Aligned_cols=136  Identities=14%  Similarity=0.087  Sum_probs=100.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |+||++|||||+|+||.+++++|+++|  ++|++++|+..........+    ...++.++.+|++|.+++.++++    
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~~~----   73 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRALR----   73 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHHHh----
Confidence            478999999999999999999999987  78999998865543332222    13468889999999998887764    


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCcccc
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~  272 (328)
                         ++|+|||+||....  .....+..+++++|+.|++++++++.+.-.+.    ||.   .+..+...|+++|++.+
T Consensus        74 ---~iD~Vih~Ag~~~~--~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~---~~~~p~~~Y~~sK~~~E  143 (324)
T TIGR03589        74 ---GVDYVVHAAALKQV--PAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD---KAANPINLYGATKLASD  143 (324)
T ss_pred             ---cCCEEEECcccCCC--chhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC---CCCCCCCHHHHHHHHHH
Confidence               58999999997532  11122335789999999999999998642111    222   12223577999999987

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.57  E-value=1e-14  Score=135.59  Aligned_cols=149  Identities=13%  Similarity=0.051  Sum_probs=108.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH-HHHHHHHh--hCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN-DAISKILT--EKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~-~~~~~l~~--~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ++++|++|||||+|+||.+++++|+++|++|++++|+..... .....+..  ...+.++.++.+|++|.+++.++++.+
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   82 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI   82 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence            678899999999999999999999999999999988654211 11122211  011346889999999999999888865


Q ss_pred             HHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh-----c----cc--cceeccc-------
Q psy4246         197 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-----G----AK--LFARQQG-------  258 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~----ss--~~~~~~~-------  258 (328)
                           .+|+|||+||....  ....+.....+++|+.|+.++++++.+.+.+     .    ||  +++....       
T Consensus        83 -----~~d~Vih~A~~~~~--~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~E~~~  155 (340)
T PLN02653         83 -----KPDEVYNLAAQSHV--AVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPPQSETTP  155 (340)
T ss_pred             -----CCCEEEECCcccch--hhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCCCCCCCCC
Confidence                 59999999997532  2233455788899999999999999988754     1    22  2332111       


Q ss_pred             -ccchhhhccCccccCCCC
Q psy4246         259 -AATSIYCATSLDLSLPVS  276 (328)
Q Consensus       259 -~~~~~y~ask~al~~~~~  276 (328)
                       .....|+++|.+.+ .+.
T Consensus       156 ~~p~~~Y~~sK~~~e-~~~  173 (340)
T PLN02653        156 FHPRSPYAVAKVAAH-WYT  173 (340)
T ss_pred             CCCCChhHHHHHHHH-HHH
Confidence             13567999999988 544

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.55  E-value=2.9e-14  Score=133.06  Aligned_cols=145  Identities=12%  Similarity=0.006  Sum_probs=106.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ++||++|||||+|+||.++++.|+++|++|++++|+..........+. .  +.++.++.+|++|.+++.+++++.    
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~Dl~~~~~~~~~~~~~----   74 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-L--AKKIEDHFGDIRDAAKLRKAIAEF----   74 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-h--cCCceEEEccCCCHHHHHHHHhhc----
Confidence            468999999999999999999999999999999988654433322221 1  236778999999999998888764    


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH-Hhc----ccc--cee----------cccccchh
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL-IKG----AKL--FAR----------QQGAATSI  263 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~-~~~----ss~--~~~----------~~~~~~~~  263 (328)
                       ++|+|||+||...  ...+.+++...+++|+.+++++++++...- .+.    ||.  ++.          .+..+...
T Consensus        75 -~~d~vih~A~~~~--~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~  151 (349)
T TIGR02622        75 -KPEIVFHLAAQPL--VRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDP  151 (349)
T ss_pred             -CCCEEEECCcccc--cccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCc
Confidence             6899999999642  244556778899999999999999885421 111    332  111          01133567


Q ss_pred             hhccCccccCCCC
Q psy4246         264 YCATSLDLSLPVS  276 (328)
Q Consensus       264 y~ask~al~~~~~  276 (328)
                      |+++|.+.+ .+.
T Consensus       152 Y~~sK~~~e-~~~  163 (349)
T TIGR02622       152 YSSSKACAE-LVI  163 (349)
T ss_pred             chhHHHHHH-HHH
Confidence            999999887 444

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.44  E-value=1.3e-12  Score=125.49  Aligned_cols=122  Identities=10%  Similarity=0.078  Sum_probs=91.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh---H----H---------HHHHHHHHhhCCCCeEEEEEc
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD---K----A---------NDAISKILTEKPSAQCIAMEL  181 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~---~----~---------~~~~~~l~~~~~~~~~~~~~~  181 (328)
                      ..++++|++|||||+|+||.+++++|+++|++|+++++...   .    .         .+....+... .+.++.++.+
T Consensus        42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~v~~  120 (442)
T PLN02572         42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEV-SGKEIELYVG  120 (442)
T ss_pred             CccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHh-hCCcceEEEC
Confidence            34688999999999999999999999999999999874211   0    0         0111111111 1346889999


Q ss_pred             ccCCHHHHHHHHHHHHHhcCCccEEEEccccCC-CCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         182 NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       182 Dls~~~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      |++|.+.+.++++..     ++|+|||+|+... +....++++++..+++|+.|++++++++...
T Consensus       121 Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~  180 (442)
T PLN02572        121 DICDFEFLSEAFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF  180 (442)
T ss_pred             CCCCHHHHHHHHHhC-----CCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999998888764     6999999997643 2233455667888999999999999998765

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.43  E-value=1.1e-12  Score=124.60  Aligned_cols=146  Identities=17%  Similarity=0.061  Sum_probs=117.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..+.||++|||||+|.||.++++++++.+. ++++.+|++.++-....++...++..++.++-+|+.|.+.++.+++.. 
T Consensus       246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~-  324 (588)
T COG1086         246 AMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH-  324 (588)
T ss_pred             hHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC-
Confidence            458999999999999999999999999986 788999999998888889988777789999999999999999988864 


Q ss_pred             HhcCCccEEEEccccC-CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-cccceecccccchhhhccCcccc
Q psy4246         198 KKFRSLNILVLNAGVF-GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-ss~~~~~~~~~~~~y~ask~al~  272 (328)
                          ++|+++|.|+.= -|.   -+....+.+.+|++|+.++++++...=.+. --++......+..+|++||...+
T Consensus       325 ----kvd~VfHAAA~KHVPl---~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaTKr~aE  394 (588)
T COG1086         325 ----KVDIVFHAAALKHVPL---VEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGATKRLAE  394 (588)
T ss_pred             ----CCceEEEhhhhccCcc---hhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHHHHHHH
Confidence                699999999973 233   334556889999999999999997764443 11112334455677888876544

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.41  E-value=9.6e-13  Score=123.01  Aligned_cols=114  Identities=11%  Similarity=0.121  Sum_probs=85.0

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEE-EeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVI-LACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi-~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      |++|||||+|+||.++++.|.++|++|+ ++++.... .. ...+....++.++.++.+|++|.++++++++..     +
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~   74 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GN-LMSLAPVAQSERFAFEKVDICDRAELARVFTEH-----Q   74 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cc-hhhhhhcccCCceEEEECCCcChHHHHHHHhhc-----C
Confidence            5799999999999999999999998755 45554221 11 111111112346788899999999998887752     6


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      +|+|||+||....  ..+.+.++..+++|+.|++++++++.+.|
T Consensus        75 ~D~Vih~A~~~~~--~~~~~~~~~~~~~N~~gt~~ll~a~~~~~  116 (355)
T PRK10217         75 PDCVMHLAAESHV--DRSIDGPAAFIETNIVGTYTLLEAARAYW  116 (355)
T ss_pred             CCEEEECCcccCc--chhhhChHHHHHHhhHHHHHHHHHHHHhh
Confidence            9999999997532  33446678999999999999999998753

>PLN02214 cinnamoyl-CoA reductase

Probab=99.41  E-value=1.6e-12  Score=121.14  Aligned_cols=110  Identities=15%  Similarity=0.091  Sum_probs=86.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH-HHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA-ISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~-~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +++|++|||||+|+||.+++++|+++|++|++++|+.+..... ...+..  ...++.++.+|++|.+++.++++     
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~-----   80 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG--GKERLILCKADLQDYEALKAAID-----   80 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC--CCCcEEEEecCcCChHHHHHHHh-----
Confidence            5678999999999999999999999999999999986543221 222211  12368889999999998877765     


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                        ++|+|||+||...       +++...+++|+.|+.++++++...-
T Consensus        81 --~~d~Vih~A~~~~-------~~~~~~~~~nv~gt~~ll~aa~~~~  118 (342)
T PLN02214         81 --GCDGVFHTASPVT-------DDPEQMVEPAVNGAKFVINAAAEAK  118 (342)
T ss_pred             --cCCEEEEecCCCC-------CCHHHHHHHHHHHHHHHHHHHHhcC
Confidence              5899999999641       2467889999999999999987653

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.39  E-value=2.4e-12  Score=119.57  Aligned_cols=115  Identities=11%  Similarity=0.004  Sum_probs=85.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+++|++|||||+|+||.+++++|+++|++|+++.|+.+....... +.......++.++.+|++|.+++.++++     
T Consensus         6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   79 (338)
T PLN00198          6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPIA-----   79 (338)
T ss_pred             CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHHh-----
Confidence            3568899999999999999999999999999988887644322211 1111001257889999999988777664     


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                        ++|+|||+|+... ..  ..+.+...+++|+.|+.++++++.+.
T Consensus        80 --~~d~vih~A~~~~-~~--~~~~~~~~~~~nv~g~~~ll~a~~~~  120 (338)
T PLN00198         80 --GCDLVFHVATPVN-FA--SEDPENDMIKPAIQGVHNVLKACAKA  120 (338)
T ss_pred             --cCCEEEEeCCCCc-cC--CCChHHHHHHHHHHHHHHHHHHHHhc
Confidence              5899999999532 11  12334567899999999999998765

>PLN02240 UDP-glucose 4-epimerase

Probab=99.39  E-value=4.2e-12  Score=118.43  Aligned_cols=146  Identities=16%  Similarity=0.176  Sum_probs=102.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC--CCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK--PSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|++|++|||||+|+||.++++.|+++|++|++++|...........+....  .+.++.++.+|++|.+++..+++.. 
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~-   80 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST-   80 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC-
Confidence            5778999999999999999999999999999999875332221111222111  1346788999999999998887653 


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc--ceec---------ccccch
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL--FARQ---------QGAATS  262 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~--~~~~---------~~~~~~  262 (328)
                          .+|+|||+||....  ..+.+.+...+++|+.+++++++++...-.+.    ||.  ++..         +.....
T Consensus        81 ----~~d~vih~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~~~~  154 (352)
T PLN02240         81 ----RFDAVIHFAGLKAV--GESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEFPLSATN  154 (352)
T ss_pred             ----CCCEEEEccccCCc--cccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCC
Confidence                79999999997532  22345678899999999999998775421111    332  1110         111346


Q ss_pred             hhhccCcccc
Q psy4246         263 IYCATSLDLS  272 (328)
Q Consensus       263 ~y~ask~al~  272 (328)
                      .|+.+|.+.+
T Consensus       155 ~Y~~sK~~~e  164 (352)
T PLN02240        155 PYGRTKLFIE  164 (352)
T ss_pred             HHHHHHHHHH
Confidence            7999998887

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.38  E-value=3.7e-12  Score=118.56  Aligned_cols=145  Identities=18%  Similarity=0.085  Sum_probs=101.5

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHH-HHHHHHHHhh---CCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKA-NDAISKILTE---KPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~-~~~~~~l~~~---~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      |++|||||+|+||.+++++|+++|++|++++|+.+.. ......+...   ..+.++.++.+|++|.+++.++++.+   
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~---   77 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI---   77 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC---
Confidence            6899999999999999999999999999999875421 0111111111   01246889999999999998888864   


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH-HHh--c----ccc--ceec---------ccccc
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA-LIK--G----AKL--FARQ---------QGAAT  261 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~--~----ss~--~~~~---------~~~~~  261 (328)
                        ++|+|||+|+.....  ...+.-...+++|+.|+.++++++.+. +.+  .    ||.  ++..         +....
T Consensus        78 --~~d~ViH~Aa~~~~~--~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~  153 (343)
T TIGR01472        78 --KPTEIYNLAAQSHVK--VSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPR  153 (343)
T ss_pred             --CCCEEEECCcccccc--hhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCCCCC
Confidence              589999999975321  122233567889999999999999874 221  1    222  2211         11245


Q ss_pred             hhhhccCccccCCCC
Q psy4246         262 SIYCATSLDLSLPVS  276 (328)
Q Consensus       262 ~~y~ask~al~~~~~  276 (328)
                      ..|++||.+.+ .+.
T Consensus       154 ~~Y~~sK~~~e-~~~  167 (343)
T TIGR01472       154 SPYAAAKLYAH-WIT  167 (343)
T ss_pred             ChhHHHHHHHH-HHH
Confidence            68999999888 544

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.37  E-value=5.3e-13  Score=119.14  Aligned_cols=140  Identities=19%  Similarity=0.176  Sum_probs=96.1

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeE----EEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         126 AIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQC----IAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~----~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ||||||+|.||.+++++|++.+. +|+++++++..+-....++....++.++    ..+.+|++|.+.+..++++.    
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~----   76 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY----   76 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc----
Confidence            69999999999999999999995 7999999999999888888765544334    34688999999998888764    


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-cccceecccccchhhhccCcccc
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-ss~~~~~~~~~~~~y~ask~al~  272 (328)
                       ++|+++|.|++=..  .+.++...+.+++|+.|+.++++++..+=.++ =.++......+..+|++||.-.+
T Consensus        77 -~pdiVfHaAA~KhV--pl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmGatKrlaE  146 (293)
T PF02719_consen   77 -KPDIVFHAAALKHV--PLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMGATKRLAE  146 (293)
T ss_dssp             -T-SEEEE------H--HHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHHHHHHHHH
T ss_pred             -CCCEEEEChhcCCC--ChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHHHHHHHHH
Confidence             79999999997311  11223457889999999999999998764433 11122444456788999987655

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.37  E-value=5.8e-12  Score=116.16  Aligned_cols=115  Identities=14%  Similarity=0.052  Sum_probs=86.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..||++|||||+|+||.+++++|+++|++|+++.|+....+.............++.++.+|+++.+++.++++      
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------   76 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE------   76 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh------
Confidence            46899999999999999999999999999998888766543322211111112468889999999998887775      


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                       .+|+|||+||.....  . .+.....+++|+.|+.++++++...
T Consensus        77 -~~d~vih~A~~~~~~--~-~~~~~~~~~~nv~gt~~ll~~~~~~  117 (322)
T PLN02986         77 -GCDAVFHTASPVFFT--V-KDPQTELIDPALKGTINVLNTCKET  117 (322)
T ss_pred             -CCCEEEEeCCCcCCC--C-CCchhhhhHHHHHHHHHHHHHHHhc
Confidence             489999999974221  1 1234567999999999999988653

>KOG3209|consensus

Probab=99.36  E-value=5.1e-13  Score=127.62  Aligned_cols=82  Identities=30%  Similarity=0.557  Sum_probs=72.4

Q ss_pred             CCCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCCcccc-----ccCCCCCCCeeeeeCCCcEEEEeccCccccc
Q psy4246          10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKK-----VSGDLPLGWEKSVSEDGKITFYNKDTHVKTY   84 (328)
Q Consensus        10 ~~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~-----~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~   84 (328)
                      ..|.+++||..||+.++.+|.+||++|+||+|+|.+||..++..     +.+++|+||++.-+.....||++|.++.++|
T Consensus       216 ~e~~~gplp~nwemayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~  295 (984)
T KOG3209|consen  216 QEDNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQY  295 (984)
T ss_pred             cccccCCCCccceEeEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccceeEEecccchhhhh
Confidence            45678889999999999999999999999999999999543322     3478999999999999999999999999999


Q ss_pred             CCCccch
Q psy4246          85 TDPRIVF   91 (328)
Q Consensus        85 ~~P~~~~   91 (328)
                      +.|.+..
T Consensus       296 enpvlea  302 (984)
T KOG3209|consen  296 ENPVLEA  302 (984)
T ss_pred             ccchhhc
Confidence            9998753

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.33  E-value=1.7e-11  Score=114.62  Aligned_cols=117  Identities=14%  Similarity=0.057  Sum_probs=89.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +-+++++|||||+|.||.+++++|+++|++|++++|+.+........+..   +.++.++.+|+++.+++.++++     
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~-----   78 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVK-----   78 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHc-----
Confidence            34678899999999999999999999999999999987655444333321   3478889999999988877764     


Q ss_pred             cCCccEEEEccccCCCCC---CCChhHH--HHHHhhhhHHHHHHHHHHHHHH
Q psy4246         200 FRSLNILVLNAGVFGLGF---SHTEDGF--ETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~---~~~~~~~--~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                        .+|+|||+||......   ..+++.+  ..++++|+.|++++++++.+..
T Consensus        79 --~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~  128 (353)
T PLN02896         79 --GCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK  128 (353)
T ss_pred             --CCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC
Confidence              5899999999854322   1233333  4567888899999999987764

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.31  E-value=1.7e-11  Score=112.88  Aligned_cols=113  Identities=14%  Similarity=0.067  Sum_probs=85.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhh-CCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +||++|||||+|.||.+++++|+++|++|++++|+....... ..+... ....++.++.+|++|.+++..+++      
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------   75 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKT-EHLLALDGAKERLHLFKANLLEEGSFDSVVD------   75 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhH-HHHHhccCCCCceEEEeccccCcchHHHHHc------
Confidence            468999999999999999999999999999999876543222 122111 112478899999999988777765      


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                       ++|+|||+|+......   .+.....+++|+.|+.++++++...
T Consensus        76 -~~d~Vih~A~~~~~~~---~~~~~~~~~~nv~gt~~ll~a~~~~  116 (322)
T PLN02662         76 -GCEGVFHTASPFYHDV---TDPQAELIDPAVKGTLNVLRSCAKV  116 (322)
T ss_pred             -CCCEEEEeCCcccCCC---CChHHHHHHHHHHHHHHHHHHHHhC
Confidence             5899999999753211   1222578999999999999998764

>PLN02583 cinnamoyl-CoA reductase

Probab=99.31  E-value=2.2e-11  Score=111.19  Aligned_cols=113  Identities=14%  Similarity=0.034  Sum_probs=84.8

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH--HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK--ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~--~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      =++|++|||||+|+||++++++|+++|++|+++.|+...  .......+...  +.++.++.+|++|.+++.+++.    
T Consensus         4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~----   77 (297)
T PLN02583          4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALK----   77 (297)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHc----
Confidence            357899999999999999999999999999999986432  22222222111  3468889999999988765543    


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                         ..|+++|.++...   +.. ..++.++++|+.|++++++++.+.+
T Consensus        78 ---~~d~v~~~~~~~~---~~~-~~~~~~~~~nv~gt~~ll~aa~~~~  118 (297)
T PLN02583         78 ---GCSGLFCCFDPPS---DYP-SYDEKMVDVEVRAAHNVLEACAQTD  118 (297)
T ss_pred             ---CCCEEEEeCccCC---ccc-ccHHHHHHHHHHHHHHHHHHHHhcC
Confidence               5788888765432   112 2467899999999999999998865

>PLN02650 dihydroflavonol-4-reductase

Probab=99.30  E-value=2.1e-11  Score=113.90  Aligned_cols=115  Identities=13%  Similarity=0.007  Sum_probs=87.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +.|++|||||+|.||.+++++|+++|++|++++|+.+........+.......++.++.+|++|.+.+.++++       
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~-------   76 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR-------   76 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh-------
Confidence            5678999999999999999999999999999999865544432221111112368889999999988877765       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      .+|+|||+|+.... .  ..+..+..+++|+.|++++++++.+..
T Consensus        77 ~~d~ViH~A~~~~~-~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~  118 (351)
T PLN02650         77 GCTGVFHVATPMDF-E--SKDPENEVIKPTVNGMLSIMKACAKAK  118 (351)
T ss_pred             CCCEEEEeCCCCCC-C--CCCchhhhhhHHHHHHHHHHHHHHhcC
Confidence            48999999986421 1  112346789999999999999998764

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.29  E-value=1.7e-11  Score=113.78  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=96.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+|+||.++++.|+++|++|++++|...........+... .+.++.++.+|++|.+++.++++.     .++|
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d   75 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIRNEALLTEILHD-----HAID   75 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHh-cCCCceEEEccCCCHHHHHHHHhc-----CCCC
Confidence            5899999999999999999999999999876533322222222221 234677889999999988887763     3799


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc--ceecc----------cccchhhhccC
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL--FARQQ----------GAATSIYCATS  268 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~--~~~~~----------~~~~~~y~ask  268 (328)
                      +|||+||......  ..+.....+++|+.++.++++++...=.++    ||.  ++...          ......|+.+|
T Consensus        76 ~vvh~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK  153 (338)
T PRK10675         76 TVIHFAGLKAVGE--SVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSK  153 (338)
T ss_pred             EEEECCccccccc--hhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHH
Confidence            9999999753211  223345688999999999998775431111    332  11110          12357899999


Q ss_pred             cccc
Q psy4246         269 LDLS  272 (328)
Q Consensus       269 ~al~  272 (328)
                      .+.+
T Consensus       154 ~~~E  157 (338)
T PRK10675        154 LMVE  157 (338)
T ss_pred             HHHH
Confidence            9877

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.28  E-value=1.7e-11  Score=112.19  Aligned_cols=141  Identities=13%  Similarity=0.090  Sum_probs=98.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhH-HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         125 NAIVTGANTGIGFETARSLALHG--CRVILACRSLDK-ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +++||||+|+||.+++++|+++|  .+|++++|.... ..+....+.   ...++.++.+|++|++++.++++..     
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~-----   72 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLE---DNPRYRFVKGDIGDRELVSRLFTEH-----   72 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhc---cCCCcEEEEcCCcCHHHHHHHHhhc-----
Confidence            48999999999999999999987  689888764211 111112221   1236788999999999998888753     


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh-c----ccc--ceec----------ccccchhh
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-G----AKL--FARQ----------QGAATSIY  264 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~----ss~--~~~~----------~~~~~~~y  264 (328)
                      ++|+|||+|+...  .+.+.+.++..+++|+.++.++++++...+.+ .    ||.  ++..          +......|
T Consensus        73 ~~d~vi~~a~~~~--~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~~~Y  150 (317)
T TIGR01181        73 QPDAVVHFAAESH--VDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPY  150 (317)
T ss_pred             CCCEEEEcccccC--chhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCCCch
Confidence            5999999999753  22344567788999999999999988776443 2    221  1111          11134579


Q ss_pred             hccCccccCCCC
Q psy4246         265 CATSLDLSLPVS  276 (328)
Q Consensus       265 ~ask~al~~~~~  276 (328)
                      +.+|.+.+ .+.
T Consensus       151 ~~sK~~~e-~~~  161 (317)
T TIGR01181       151 SASKAASD-HLV  161 (317)
T ss_pred             HHHHHHHH-HHH
Confidence            99999887 443

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.24  E-value=1.6e-11  Score=107.83  Aligned_cols=144  Identities=17%  Similarity=0.148  Sum_probs=105.0

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCCh--hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGC--RVILACRSL--DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +.+|||||+|.||..+++.+.++..  +|+.++.-.  ...+.+ ..+.   ...+..+++.|++|.+.+.+++++.   
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l-~~~~---~~~~~~fv~~DI~D~~~v~~~~~~~---   73 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENL-ADVE---DSPRYRFVQGDICDRELVDRLFKEY---   73 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHH-Hhhh---cCCCceEEeccccCHHHHHHHHHhc---
Confidence            4689999999999999999999864  467666421  111111 2222   2458999999999999988888764   


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh-c----------cccc-------eecccccc
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-G----------AKLF-------ARQQGAAT  261 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~----------ss~~-------~~~~~~~~  261 (328)
                        ++|++||-|+-..  .+-+.++-..-+++|+.|++.|.+++..+..+ +          +++.       -..+..+.
T Consensus        74 --~~D~VvhfAAESH--VDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~Ps  149 (340)
T COG1088          74 --QPDAVVHFAAESH--VDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPS  149 (340)
T ss_pred             --CCCeEEEechhcc--ccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCC
Confidence              7999999998643  34455556677899999999999999988753 1          2221       13345678


Q ss_pred             hhhhccCccccCCCCccc
Q psy4246         262 SIYCATSLDLSLPVSGSY  279 (328)
Q Consensus       262 ~~y~ask~al~~~~~g~~  279 (328)
                      +.|+||||+-. .+...|
T Consensus       150 SPYSASKAasD-~lVray  166 (340)
T COG1088         150 SPYSASKAASD-LLVRAY  166 (340)
T ss_pred             CCcchhhhhHH-HHHHHH
Confidence            99999999987 555443

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=99.23  E-value=2.4e-11  Score=106.25  Aligned_cols=100  Identities=13%  Similarity=0.164  Sum_probs=78.0

Q ss_pred             ceEEEcCC-CCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGA-NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGa-s~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      .+=.||.. +||||+++|+.|+++|++|+++++...        +...  .    ...||+++.++++++++.+.+.+++
T Consensus        15 ~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l~~~--~----~~~~Dv~d~~s~~~l~~~v~~~~g~   80 (227)
T TIGR02114        15 SVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA--------LKPE--P----HPNLSIREIETTKDLLITLKELVQE   80 (227)
T ss_pred             CceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh--------cccc--c----CCcceeecHHHHHHHHHHHHHHcCC
Confidence            45566766 578999999999999999999886311        1000  0    2468999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHH
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTL  240 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~  240 (328)
                      +|+||||||+.  .+..+++.++|+++   +..+.|++.+
T Consensus        81 iDiLVnnAgv~d~~~~~~~s~e~~~~~---~~~~~~~~~~  117 (227)
T TIGR02114        81 HDILIHSMAVSDYTPVYMTDLEQVQAS---DNLNEFLSKQ  117 (227)
T ss_pred             CCEEEECCEeccccchhhCCHHHHhhh---cchhhhhccc
Confidence            99999999974  45678889999977   4456666665

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.21  E-value=4.1e-11  Score=110.41  Aligned_cols=102  Identities=21%  Similarity=0.142  Sum_probs=81.9

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +++||||+|+||..+++.|+++|++|++++|+.+....    +.    ...+..+.+|++|.++++++++       .+|
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~----~~~~~~~~~D~~~~~~l~~~~~-------~~d   66 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN----LE----GLDVEIVEGDLRDPASLRKAVA-------GCR   66 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc----cc----cCCceEEEeeCCCHHHHHHHHh-------CCC
Confidence            68999999999999999999999999999998654321    11    2357789999999998877765       589


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      +|||+|+....    ..+.++..+++|+.++.++++++...
T Consensus        67 ~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~  103 (328)
T TIGR03466        67 ALFHVAADYRL----WAPDPEEMYAANVEGTRNLLRAALEA  103 (328)
T ss_pred             EEEEeceeccc----CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999986421    22346788999999999999988764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.21  E-value=4.9e-11  Score=109.65  Aligned_cols=110  Identities=18%  Similarity=0.225  Sum_probs=82.1

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+|+||.++++.|+++|++|++++|...........+..   ..++..+.+|+++.++++++++.     +++|
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~-----~~~d   72 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER---ITRVTFVEGDLRDRELLDRLFEE-----HKID   72 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc---ccceEEEECCCCCHHHHHHHHHh-----CCCc
Confidence            379999999999999999999999999887643322222222211   12577889999999998888763     4799


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      ++|||||......  +.++....+.+|+.++..+++++..
T Consensus        73 ~vv~~ag~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~  110 (328)
T TIGR01179        73 AVIHFAGLIAVGE--SVQDPLKYYRNNVVNTLNLLEAMQQ  110 (328)
T ss_pred             EEEECccccCcch--hhcCchhhhhhhHHHHHHHHHHHHh
Confidence            9999999753221  2334567889999999999988754

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.20  E-value=1.3e-10  Score=108.56  Aligned_cols=111  Identities=13%  Similarity=0.145  Sum_probs=82.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCCh--hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCR-VILACRSL--DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++|||||+|+||.+++++|+++|++ |+++++..  ...... ..+   .++.++.++.+|++|.+++++++++.     
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~-----   72 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESL-ADV---SDSERYVFEHADICDRAELDRIFAQH-----   72 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHH-Hhc---ccCCceEEEEecCCCHHHHHHHHHhc-----
Confidence            5899999999999999999999986 55455432  111111 111   12346788999999999998888752     


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      ++|+|||+||....  ....+..+..+++|+.|++++++++.++|
T Consensus        73 ~~d~vih~A~~~~~--~~~~~~~~~~~~~N~~gt~~ll~~~~~~~  115 (352)
T PRK10084         73 QPDAVMHLAAESHV--DRSITGPAAFIETNIVGTYVLLEAARNYW  115 (352)
T ss_pred             CCCEEEECCcccCC--cchhcCchhhhhhhhHHHHHHHHHHHHhc
Confidence            79999999997532  12223457789999999999999998765

>KOG1502|consensus

Probab=99.19  E-value=6.6e-10  Score=100.37  Aligned_cols=128  Identities=13%  Similarity=0.086  Sum_probs=96.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHH--HHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND--AISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~--~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .++.|+||||+|-||..+++.|+++|+.|..+.|+++..+.  ...++...  +.+...+..|++|++++..+++     
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a--~~~l~l~~aDL~d~~sf~~ai~-----   77 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGA--KERLKLFKADLLDEGSFDKAID-----   77 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccC--cccceEEeccccccchHHHHHh-----
Confidence            67899999999999999999999999999999999877433  23333322  4468999999999999988887     


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccccceecccccchhhhccCcccc
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~~~~~~~~~~~~y~ask~al~  272 (328)
                        +.|+|+|.|.......  +. .-.+.++..+.|+.++.+++...=           ...-.+|.+|-+|+.
T Consensus        78 --gcdgVfH~Asp~~~~~--~~-~e~~li~pav~Gt~nVL~ac~~~~-----------sVkrvV~TSS~aAv~  134 (327)
T KOG1502|consen   78 --GCDGVFHTASPVDFDL--ED-PEKELIDPAVKGTKNVLEACKKTK-----------SVKRVVYTSSTAAVR  134 (327)
T ss_pred             --CCCEEEEeCccCCCCC--CC-cHHhhhhHHHHHHHHHHHHHhccC-----------CcceEEEeccHHHhc
Confidence              5899999998753211  11 123789999999999998884421           123455666666665

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.18  E-value=3.5e-10  Score=99.92  Aligned_cols=165  Identities=21%  Similarity=0.169  Sum_probs=116.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      +.+|||||+|=||.+++.+|++.|++|+++|.-...-.+.+..+       .+.++..|+.|.+.+++++++.     +|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~-------~~~f~~gDi~D~~~L~~vf~~~-----~i   68 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL-------QFKFYEGDLLDRALLTAVFEEN-----KI   68 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc-------cCceEEeccccHHHHHHHHHhc-----CC
Confidence            36999999999999999999999999999987544333333221       1578999999999999988875     89


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---ccccee------------cccccchhhhccC
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKLFAR------------QQGAATSIYCATS  268 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~~~~------------~~~~~~~~y~ask  268 (328)
                      |.|||-||...-  .-+.++-.+.++.|+.|+..|++++..+=.+.   ||.++.            .+......|+.||
T Consensus        69 daViHFAa~~~V--gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~sK  146 (329)
T COG1087          69 DAVVHFAASISV--GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSK  146 (329)
T ss_pred             CEEEECcccccc--chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCCCCCCCCcchhHH
Confidence            999999997422  22455667889999999999999987765544   444321            2223556788888


Q ss_pred             ccccCCCC-------------ccccccCccCCCCcccCCHHHHHHHHH
Q psy4246         269 LDLSLPVS-------------GSYFNNCCRCPPSKAAQDEALATKLWK  303 (328)
Q Consensus       269 ~al~~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (328)
                      ..++ .+-             =.||+.+...+.+....+..-...|..
T Consensus       147 lm~E-~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip  193 (329)
T COG1087         147 LMSE-EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIP  193 (329)
T ss_pred             HHHH-HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHH
Confidence            8776 222             236666665655555554443344433

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.16  E-value=3.3e-10  Score=105.75  Aligned_cols=145  Identities=14%  Similarity=0.088  Sum_probs=98.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhh---CCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE---KPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ..+++|++|||||+|-||.+++++|.++|++|++++|...........+...   ....++.++.+|++|.+.+..+++ 
T Consensus        11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~-   89 (348)
T PRK15181         11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK-   89 (348)
T ss_pred             ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh-
Confidence            3578899999999999999999999999999999998643322222222111   112367889999999887776664 


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc--ceecc---------ccc
Q psy4246         196 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL--FARQQ---------GAA  260 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~--~~~~~---------~~~  260 (328)
                            .+|+|||.|+......  ..++....+++|+.|+.++.+++...=.++    ||.  ++...         ...
T Consensus        90 ------~~d~ViHlAa~~~~~~--~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~p  161 (348)
T PRK15181         90 ------NVDYVLHQAALGSVPR--SLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGRP  161 (348)
T ss_pred             ------CCCEEEECccccCchh--hhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCCCCCCC
Confidence                  4899999999753221  223345679999999999999886541111    332  22111         113


Q ss_pred             chhhhccCcccc
Q psy4246         261 TSIYCATSLDLS  272 (328)
Q Consensus       261 ~~~y~ask~al~  272 (328)
                      ...|+.+|.+.+
T Consensus       162 ~~~Y~~sK~~~e  173 (348)
T PRK15181        162 LSPYAVTKYVNE  173 (348)
T ss_pred             CChhhHHHHHHH
Confidence            457999987766

>KOG1371|consensus

Probab=99.15  E-value=2.1e-10  Score=102.31  Aligned_cols=143  Identities=14%  Similarity=0.169  Sum_probs=103.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC-CCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK-PSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++.||||||+|-||.+++.+|.++|+.|+++|.=..........+.... .+.++.++..|++|.+.++++++..     
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~-----   76 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEV-----   76 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhc-----
Confidence            5789999999999999999999999999999853322222222222221 1578999999999999999999886     


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc--ce---------eccc-ccchhhh
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL--FA---------RQQG-AATSIYC  265 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~--~~---------~~~~-~~~~~y~  265 (328)
                      .+|.|+|-|+.-.-  ..+.+...+.++.|+.|++++...+..+=.+.    ||.  ++         ..+. .+...|+
T Consensus        77 ~fd~V~Hfa~~~~v--geS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg  154 (343)
T KOG1371|consen   77 KFDAVMHFAALAAV--GESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYG  154 (343)
T ss_pred             CCceEEeehhhhcc--chhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcCCCCCCCCcch
Confidence            69999999997422  12334447889999999999998886543221    222  22         1111 2567899


Q ss_pred             ccCcccc
Q psy4246         266 ATSLDLS  272 (328)
Q Consensus       266 ask~al~  272 (328)
                      .+|.+++
T Consensus       155 ~tK~~iE  161 (343)
T KOG1371|consen  155 KTKKAIE  161 (343)
T ss_pred             hhhHHHH
Confidence            9998887

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.12  E-value=5.2e-10  Score=94.05  Aligned_cols=85  Identities=16%  Similarity=0.114  Sum_probs=72.1

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +++||||+ |+|.++++.|+++|++|++++|+.+..+.+...+..   ..++.++.+|++|.++++++++.+.+.+|++|
T Consensus         2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~---~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id   77 (177)
T PRK08309          2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT---PESITPLPLDYHDDDALKLAIKSTIEKNGPFD   77 (177)
T ss_pred             EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc---CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCe
Confidence            58999998 788889999999999999999998776665544422   34788899999999999999999999999999


Q ss_pred             EEEEccccC
Q psy4246         205 ILVLNAGVF  213 (328)
Q Consensus       205 ~lvnnAg~~  213 (328)
                      ++|+.+-..
T Consensus        78 ~lv~~vh~~   86 (177)
T PRK08309         78 LAVAWIHSS   86 (177)
T ss_pred             EEEEecccc
Confidence            999876543

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.11  E-value=1.4e-10  Score=104.82  Aligned_cols=104  Identities=17%  Similarity=0.077  Sum_probs=80.4

Q ss_pred             EEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         127 IVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       127 lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      |||||+|-||.+++++|+++|  ++|.++++.......  ..+..   -....++.+|++|.+++.++++       +.|
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~---~~~~~~~~~Di~d~~~l~~a~~-------g~d   68 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQK---SGVKEYIQGDITDPESLEEALE-------GVD   68 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhc---ccceeEEEeccccHHHHHHHhc-------CCc
Confidence            699999999999999999999  789888876543221  11111   1123389999999999988876       689


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      +|||.|+......   ....+..+++|+.|+-++++++...
T Consensus        69 ~V~H~Aa~~~~~~---~~~~~~~~~vNV~GT~nvl~aa~~~  106 (280)
T PF01073_consen   69 VVFHTAAPVPPWG---DYPPEEYYKVNVDGTRNVLEAARKA  106 (280)
T ss_pred             eEEEeCccccccC---cccHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999864332   3445788999999999999999764

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.11  E-value=5.9e-10  Score=105.60  Aligned_cols=113  Identities=14%  Similarity=0.093  Sum_probs=83.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHH--HHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND--AISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~--~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..++++++||||+|+||.++++.|+++|++|++++|+......  ...++...  ..++.++.+|++|.++++++++.+.
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~  134 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE--LPGAEVVFGDVTDADSLRKVLFSEG  134 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh--cCCceEEEeeCCCHHHHHHHHHHhC
Confidence            4578899999999999999999999999999999998754321  11112112  2367889999999999988887541


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                         +++|+||||+|.....   .    ...+++|+.++.++++++..
T Consensus       135 ---~~~D~Vi~~aa~~~~~---~----~~~~~vn~~~~~~ll~aa~~  171 (390)
T PLN02657        135 ---DPVDVVVSCLASRTGG---V----KDSWKIDYQATKNSLDAGRE  171 (390)
T ss_pred             ---CCCcEEEECCccCCCC---C----ccchhhHHHHHHHHHHHHHH
Confidence               2799999999853211   1    12356788888888887753

>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet

Probab=99.10  E-value=4.8e-11  Score=70.05  Aligned_cols=30  Identities=57%  Similarity=1.163  Sum_probs=28.4

Q ss_pred             CCccccceecCC-CcEEEEeCcCCccccCCC
Q psy4246          17 LPPGWEERVTAD-GCVYYVNHATEGTQWTHP   46 (328)
Q Consensus        17 lp~~w~~~~~~~-g~~~~~~~~~~~t~w~~p   46 (328)
                      ||+||++..+.+ |++||+|+.|++|+|++|
T Consensus         1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P   31 (31)
T PF00397_consen    1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP   31 (31)
T ss_dssp             SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred             CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence            899999999876 999999999999999998

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....

>PLN02686 cinnamoyl-CoA reductase

Probab=99.09  E-value=9.4e-10  Score=103.45  Aligned_cols=116  Identities=12%  Similarity=0.037  Sum_probs=84.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC----CCCeEEEEEcccCCHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK----PSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      .+.++|++|||||+|+||.++++.|+++|++|+++.|+.+..+.+ .++....    ...++.++.+|++|.+++.++++
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~  127 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD  127 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence            457899999999999999999999999999999988886654433 2221110    01357889999999999888776


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         195 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                             .+|.+||.|+...+....  .......++|+.++.++++++..
T Consensus       128 -------~~d~V~hlA~~~~~~~~~--~~~~~~~~~nv~gt~~llea~~~  168 (367)
T PLN02686        128 -------GCAGVFHTSAFVDPAGLS--GYTKSMAELEAKASENVIEACVR  168 (367)
T ss_pred             -------hccEEEecCeeecccccc--cccchhhhhhHHHHHHHHHHHHh
Confidence                   368999998875322111  11134567899999999998764

>PLN02427 UDP-apiose/xylose synthase

Probab=99.08  E-value=7.9e-10  Score=104.66  Aligned_cols=119  Identities=12%  Similarity=0.037  Sum_probs=84.3

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .++.++.++||||||+|.||.++++.|+++ |++|++++|+.+....+........ ..++.++.+|++|.+.++++++ 
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~-   85 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPW-SGRIQFHRINIKHDSRLEGLIK-   85 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccC-CCCeEEEEcCCCChHHHHHHhh-
Confidence            345567778999999999999999999998 5899999987654332211100001 2368899999999988777664 


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         196 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                            .+|+|||+|+...+.. .. .+-...+..|+.++.++++++...
T Consensus        86 ------~~d~ViHlAa~~~~~~-~~-~~~~~~~~~n~~gt~~ll~aa~~~  127 (386)
T PLN02427         86 ------MADLTINLAAICTPAD-YN-TRPLDTIYSNFIDALPVVKYCSEN  127 (386)
T ss_pred             ------cCCEEEEcccccChhh-hh-hChHHHHHHHHHHHHHHHHHHHhc
Confidence                  4799999999754321 11 112345668999999998887543

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.03  E-value=1.8e-09  Score=96.02  Aligned_cols=107  Identities=15%  Similarity=0.182  Sum_probs=76.2

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .++++++||||+|+||++++++|+++|++|+++.|+.+......    ..  +.++.++.+|+++..  ..+.+.+.   
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~----~~--~~~~~~~~~Dl~d~~--~~l~~~~~---   83 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL----PQ--DPSLQIVRADVTEGS--DKLVEAIG---   83 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc----cc--CCceEEEEeeCCCCH--HHHHHHhh---
Confidence            46789999999999999999999999999999999876543221    11  236888999999831  12222221   


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      .++|+||+|+|.......      ...+++|+.++.++++++..
T Consensus        84 ~~~d~vi~~~g~~~~~~~------~~~~~~n~~~~~~ll~a~~~  121 (251)
T PLN00141         84 DDSDAVICATGFRRSFDP------FAPWKVDNFGTVNLVEACRK  121 (251)
T ss_pred             cCCCEEEECCCCCcCCCC------CCceeeehHHHHHHHHHHHH
Confidence            269999999997421111      12257888999998888743

>smart00456 WW Domain with 2 conserved Trp (W) residues

Probab=99.01  E-value=3.2e-10  Score=67.35  Aligned_cols=32  Identities=63%  Similarity=1.218  Sum_probs=30.3

Q ss_pred             CCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          17 LPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        17 lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      ||.||++..+.+|++||+|+.|+.++|++|+.
T Consensus         1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~~   32 (32)
T smart00456        1 LPPGWEERKDPDGRPYYYNHETKETQWEKPRE   32 (32)
T ss_pred             CCCCCEEEECCCCCEEEEECCCCCEEcCCCCC
Confidence            79999999999999999999999999999963

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=98.96  E-value=1.2e-10  Score=105.96  Aligned_cols=74  Identities=27%  Similarity=0.465  Sum_probs=67.1

Q ss_pred             ccccceecCCCcEEEEeCcCCccccCCCCCCccccccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchh
Q psy4246          19 PGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFA   92 (328)
Q Consensus        19 ~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~   92 (328)
                      ..|++..+++||+||||..|+.++|++|.+.....+...--.||+++.+.+|++||+|..|+.+.|..|.....
T Consensus        15 s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~Kk   88 (590)
T COG5104          15 SEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKK   88 (590)
T ss_pred             HHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhc
Confidence            44999999999999999999999999998877766666678899999999999999999999999999986655

>TIGR01746 Thioester-redct thioester reductase domain

Probab=98.95  E-value=3.8e-09  Score=98.52  Aligned_cols=113  Identities=12%  Similarity=0.091  Sum_probs=77.5

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHH---HHHHHHHHhhC---C--C-CeEEEEEcccCCHHH-H-HH
Q psy4246         125 NAIVTGANTGIGFETARSLALHG--CRVILACRSLDKA---NDAISKILTEK---P--S-AQCIAMELNLCRLKS-V-KK  191 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~---~~~~~~l~~~~---~--~-~~~~~~~~Dls~~~~-v-~~  191 (328)
                      +++||||+|+||.+++++|+++|  ++|+++.|+.+..   +.+.+.+....   .  . .++.++.+|++++.. + ..
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            48999999999999999999999  7799999976532   12222221110   0  1 478999999987531 0 11


Q ss_pred             HHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         192 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       192 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      ....+   ...+|+|||||+.....     ..++..+++|+.|+..+++.+...
T Consensus        81 ~~~~~---~~~~d~vih~a~~~~~~-----~~~~~~~~~nv~g~~~ll~~a~~~  126 (367)
T TIGR01746        81 EWERL---AENVDTIVHNGALVNWV-----YPYSELRAANVLGTREVLRLAASG  126 (367)
T ss_pred             HHHHH---HhhCCEEEeCCcEeccC-----CcHHHHhhhhhHHHHHHHHHHhhC
Confidence            11222   24799999999975321     235677889999999999888654

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=98.93  E-value=6.2e-09  Score=91.15  Aligned_cols=107  Identities=20%  Similarity=0.152  Sum_probs=85.1

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      ||||||+|-||.+++++|.++|..|+.+.|+.........+       .++.++.+|+.|.+.++++++..     .+|.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~-------~~~~~~~~dl~~~~~~~~~~~~~-----~~d~   68 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK-------LNVEFVIGDLTDKEQLEKLLEKA-----NIDV   68 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH-------TTEEEEESETTSHHHHHHHHHHH-----TESE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc-------ceEEEEEeecccccccccccccc-----CceE
Confidence            79999999999999999999999988888776543322211       17889999999999999999876     7999


Q ss_pred             EEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         206 LVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       206 lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      +||+|+...  .....+.....++.|+.+..++++++...=
T Consensus        69 vi~~a~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~  107 (236)
T PF01370_consen   69 VIHLAAFSS--NPESFEDPEEIIEANVQGTRNLLEAAREAG  107 (236)
T ss_dssp             EEEEBSSSS--HHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeecccc--cccccccccccccccccccccccccccccc
Confidence            999999753  112235667888999999999998886543

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.90  E-value=4e-09  Score=99.43  Aligned_cols=79  Identities=19%  Similarity=0.360  Sum_probs=62.4

Q ss_pred             CCCCCceEEEcCC---------------CCC-ccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcc
Q psy4246         119 RDLSNYNAIVTGA---------------NTG-IGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELN  182 (328)
Q Consensus       119 ~~l~~k~~lITGa---------------s~G-IG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D  182 (328)
                      .+|+||++|||||               |+| +|+++|++|+++|++|++++++.+ +.         .+.   ....+|
T Consensus       184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~---------~~~---~~~~~d  250 (399)
T PRK05579        184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP---------TPA---GVKRID  250 (399)
T ss_pred             cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc---------CCC---CcEEEc
Confidence            5689999999999               555 999999999999999999998752 11         011   134679


Q ss_pred             cCCHHHHHHHHHHHHHhcCCccEEEEccccC
Q psy4246         183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       183 ls~~~~v~~~~~~~~~~~g~id~lvnnAg~~  213 (328)
                      +++.+++.+.+.   +.++++|+||||||+.
T Consensus       251 v~~~~~~~~~v~---~~~~~~DilI~~Aav~  278 (399)
T PRK05579        251 VESAQEMLDAVL---AALPQADIFIMAAAVA  278 (399)
T ss_pred             cCCHHHHHHHHH---HhcCCCCEEEEccccc
Confidence            998888766655   5578999999999984

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=98.89  E-value=7e-09  Score=94.78  Aligned_cols=121  Identities=17%  Similarity=0.133  Sum_probs=87.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+|-||.++++.|.++| +|++++|...                   .+..|++|.+.++++++..     ++|
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-------------------~~~~Dl~d~~~~~~~~~~~-----~~D   56 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHST-------------------DYCGDFSNPEGVAETVRKI-----RPD   56 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-------------------cccCCCCCHHHHHHHHHhc-----CCC
Confidence            59999999999999999999999 8888887521                   2457999999988887753     689


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh---ccc--cceec---------ccccchhhhccCcc
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK---GAK--LFARQ---------QGAATSIYCATSLD  270 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---~ss--~~~~~---------~~~~~~~y~ask~a  270 (328)
                      +|||+|+.....  ...++-+..+.+|+.|+.++++++...-.+   .|+  +++..         ...+...|+.+|.+
T Consensus        57 ~Vih~Aa~~~~~--~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~~~Yg~sK~~  134 (299)
T PRK09987         57 VIVNAAAHTAVD--KAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTGDIPWQETDATAPLNVYGETKLA  134 (299)
T ss_pred             EEEECCccCCcc--hhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCCCCCcCCCCCCCCCCHHHHHHHH
Confidence            999999986432  222334667889999999999988653111   122  12111         11234679999988


Q ss_pred             cc
Q psy4246         271 LS  272 (328)
Q Consensus       271 l~  272 (328)
                      .+
T Consensus       135 ~E  136 (299)
T PRK09987        135 GE  136 (299)
T ss_pred             HH
Confidence            77

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.88  E-value=1.1e-08  Score=94.27  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=75.6

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +++||||+|.||.+++++|+++|++|++++|+.++...    +.    ...+.++.+|++|++++.++++       ++|
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~----l~----~~~v~~v~~Dl~d~~~l~~al~-------g~d   66 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASF----LK----EWGAELVYGDLSLPETLPPSFK-------GVT   66 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhh----Hh----hcCCEEEECCCCCHHHHHHHHC-------CCC
Confidence            59999999999999999999999999999998654322    11    1257889999999988776664       589


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      +|||+++...       .+.....++|+.++.++.+++..
T Consensus        67 ~Vi~~~~~~~-------~~~~~~~~~~~~~~~~l~~aa~~   99 (317)
T CHL00194         67 AIIDASTSRP-------SDLYNAKQIDWDGKLALIEAAKA   99 (317)
T ss_pred             EEEECCCCCC-------CCccchhhhhHHHHHHHHHHHHH
Confidence            9999876431       11234567888898888887754

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.87  E-value=1.5e-08  Score=94.51  Aligned_cols=106  Identities=9%  Similarity=0.076  Sum_probs=78.0

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC-CHHHHHHHHHHHHHhcC
Q psy4246         124 YNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC-RLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-~~~~v~~~~~~~~~~~g  201 (328)
                      ++||||||+|-||.+++++|++. |++|++++|+......    +.   +...+.++.+|++ +.+.+.++++       
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~----~~---~~~~~~~~~~Dl~~~~~~~~~~~~-------   67 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD----LV---NHPRMHFFEGDITINKEWIEYHVK-------   67 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH----hc---cCCCeEEEeCCCCCCHHHHHHHHc-------
Confidence            46999999999999999999986 6999999987543221    11   1236888999998 5555544433       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      ++|+|||+|+...+..  ..++....+++|+.++.++++++...
T Consensus        68 ~~d~ViH~aa~~~~~~--~~~~p~~~~~~n~~~~~~ll~aa~~~  109 (347)
T PRK11908         68 KCDVILPLVAIATPAT--YVKQPLRVFELDFEANLPIVRSAVKY  109 (347)
T ss_pred             CCCEEEECcccCChHH--hhcCcHHHHHHHHHHHHHHHHHHHhc
Confidence            5899999999753221  12234577899999999999888654

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=98.86  E-value=1.2e-08  Score=92.34  Aligned_cols=89  Identities=25%  Similarity=0.303  Sum_probs=73.3

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      +|||||+|.||.++++.|.++|++|+++.|+                       .+|+.+.++++++++.+     ++|+
T Consensus         2 ilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-----------------------~~d~~~~~~~~~~~~~~-----~~d~   53 (287)
T TIGR01214         2 ILITGANGQLGRELVQQLSPEGRVVVALTSS-----------------------QLDLTDPEALERLLRAI-----RPDA   53 (287)
T ss_pred             EEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----------------------ccCCCCHHHHHHHHHhC-----CCCE
Confidence            7999999999999999999999999999874                       47999999988887653     6899


Q ss_pred             EEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         206 LVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       206 lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      +||+||....  ..........+++|+.++.++++++..
T Consensus        54 vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~   90 (287)
T TIGR01214        54 VVNTAAYTDV--DGAESDPEKAFAVNALAPQNLARAAAR   90 (287)
T ss_pred             EEECCccccc--cccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999997532  112234567889999999999998754

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=98.85  E-value=1.7e-08  Score=92.48  Aligned_cols=131  Identities=13%  Similarity=0.122  Sum_probs=88.4

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         126 AIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ||||||+|.||.++++.|.++|+ .|++++|..... . ..++       ....+..|+++.+.++.+.+.   .+.++|
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~-~~~~-------~~~~~~~d~~~~~~~~~~~~~---~~~~~D   68 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-K-FLNL-------ADLVIADYIDKEDFLDRLEKG---AFGKIE   68 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-h-hhhh-------hheeeeccCcchhHHHHHHhh---ccCCCC
Confidence            68999999999999999999998 688887654321 1 1111       113466788887776665542   346899


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh---cccc--ceecc---------cccchhhhccCcc
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK---GAKL--FARQQ---------GAATSIYCATSLD  270 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---~ss~--~~~~~---------~~~~~~y~ask~a  270 (328)
                      +|||+|+...    .+.++....+++|+.++.++++++...-.+   .||.  ++...         ......|+.+|.+
T Consensus        69 ~vvh~A~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~e~~~~~~p~~~Y~~sK~~  144 (314)
T TIGR02197        69 AIFHQGACSD----TTETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDGEAGFREGRELERPLNVYGYSKFL  144 (314)
T ss_pred             EEEECccccC----ccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCCCCCcccccCcCCCCCHHHHHHHH
Confidence            9999999743    223456778999999999999988654111   1332  21100         1145679999887


Q ss_pred             cc
Q psy4246         271 LS  272 (328)
Q Consensus       271 l~  272 (328)
                      .+
T Consensus       145 ~e  146 (314)
T TIGR02197       145 FD  146 (314)
T ss_pred             HH
Confidence            76

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.85  E-value=2.3e-08  Score=101.34  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=82.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHC--CCeEEEeeCCh--hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALH--GCRVILACRSL--DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~--Ga~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      .++|+||||||+|.||.++++.|+++  |++|++++|..  .....    +.......++.++.+|++|.+.+..++.. 
T Consensus         4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~----l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~-   78 (668)
T PLN02260          4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKN----LNPSKSSPNFKFVKGDIASADLVNYLLIT-   78 (668)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhh----hhhcccCCCeEEEECCCCChHHHHHHHhh-
Confidence            45689999999999999999999998  67899888752  12111    11111134688999999998887665432 


Q ss_pred             HHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         197 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                          .++|+|||+|+.....  ....+....+++|+.|+.++++++..
T Consensus        79 ----~~~D~ViHlAa~~~~~--~~~~~~~~~~~~Nv~gt~~ll~a~~~  120 (668)
T PLN02260         79 ----EGIDTIMHFAAQTHVD--NSFGNSFEFTKNNIYGTHVLLEACKV  120 (668)
T ss_pred             ----cCCCEEEECCCccCch--hhhhCHHHHHHHHHHHHHHHHHHHHh
Confidence                3799999999975321  12223356789999999999988855

>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

Probab=98.84  E-value=3e-09  Score=62.61  Aligned_cols=30  Identities=67%  Similarity=1.298  Sum_probs=28.8

Q ss_pred             CccccceecCCCcEEEEeCcCCccccCCCC
Q psy4246          18 PPGWEERVTADGCVYYVNHATEGTQWTHPR   47 (328)
Q Consensus        18 p~~w~~~~~~~g~~~~~~~~~~~t~w~~p~   47 (328)
                      |.+|++..+.+|++||+|+.|+.|+|++|+
T Consensus         1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~   30 (31)
T cd00201           1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR   30 (31)
T ss_pred             CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence            789999999999999999999999999996

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.82  E-value=2.2e-08  Score=94.23  Aligned_cols=108  Identities=14%  Similarity=0.072  Sum_probs=78.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++|+||||||+|.||.++++.|.++|++|++++|......      ...  ...+.++.+|+++.+.+..++.       
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~------~~~--~~~~~~~~~Dl~d~~~~~~~~~-------   84 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM------SED--MFCHEFHLVDLRVMENCLKVTK-------   84 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc------ccc--cccceEEECCCCCHHHHHHHHh-------
Confidence            5688999999999999999999999999999998643210      000  1124678899999877666543       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      ++|+|||.|+..... ..........+..|+.++.++++++...
T Consensus        85 ~~D~Vih~Aa~~~~~-~~~~~~~~~~~~~N~~~t~nll~aa~~~  127 (370)
T PLN02695         85 GVDHVFNLAADMGGM-GFIQSNHSVIMYNNTMISFNMLEAARIN  127 (370)
T ss_pred             CCCEEEEcccccCCc-cccccCchhhHHHHHHHHHHHHHHHHHh
Confidence            589999999865321 1111223456778999999999988543

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=98.81  E-value=2e-08  Score=92.01  Aligned_cols=131  Identities=14%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH--hcCCc
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK--KFRSL  203 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~--~~g~i  203 (328)
                      +|||||+|.||.+++++|+++|++++++.|+....... .           ....+|+.|..+.+.+++.+.+  .++++
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   69 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-V-----------NLVDLDIADYMDKEDFLAQIMAGDDFGDI   69 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-H-----------hhhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence            79999999999999999999999766665543321110 0           1234677776666666655542  34689


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh---cccc--ceecc---------cccchhhhccCc
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK---GAKL--FARQQ---------GAATSIYCATSL  269 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---~ss~--~~~~~---------~~~~~~y~ask~  269 (328)
                      |+|||+||..... ...   -...+++|+.++.++++++...-.+   .||.  ++...         ..+...|+.+|.
T Consensus        70 d~Vih~A~~~~~~-~~~---~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~  145 (308)
T PRK11150         70 EAIFHEGACSSTT-EWD---GKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTDDFIEEREYEKPLNVYGYSKF  145 (308)
T ss_pred             cEEEECceecCCc-CCC---hHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCCCCCCccCCCCCCCCHHHHHHH
Confidence            9999999964322 112   2457899999999999988654211   1333  22110         123467999998


Q ss_pred             ccc
Q psy4246         270 DLS  272 (328)
Q Consensus       270 al~  272 (328)
                      +.+
T Consensus       146 ~~E  148 (308)
T PRK11150        146 LFD  148 (308)
T ss_pred             HHH
Confidence            866

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.81  E-value=2.2e-08  Score=101.19  Aligned_cols=109  Identities=9%  Similarity=0.006  Sum_probs=81.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHH-HHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKS-VKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~-v~~~~~~~~~  198 (328)
                      ..+++||||||+|.||.+++++|+++ |++|++++|.......    +.   ...++.++.+|++|... +++++     
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~----~~---~~~~~~~~~gDl~d~~~~l~~~l-----  380 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR----FL---GHPRFHFVEGDISIHSEWIEYHI-----  380 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh----hc---CCCceEEEeccccCcHHHHHHHh-----
Confidence            46888999999999999999999986 7999999987643221    11   12368889999998654 33333     


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                        .++|+|||+||...+..  ..+..+..+++|+.++.++.+++...
T Consensus       381 --~~~D~ViHlAa~~~~~~--~~~~~~~~~~~Nv~~t~~ll~a~~~~  423 (660)
T PRK08125        381 --KKCDVVLPLVAIATPIE--YTRNPLRVFELDFEENLKIIRYCVKY  423 (660)
T ss_pred             --cCCCEEEECccccCchh--hccCHHHHHHhhHHHHHHHHHHHHhc
Confidence              25899999999764321  11233567899999999999998764

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.79  E-value=2.8e-08  Score=95.51  Aligned_cols=111  Identities=11%  Similarity=0.046  Sum_probs=79.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +..-++++||||||+|.||.+++++|+++|++|+++++......+..   .......++.++..|+.+..     +    
T Consensus       114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~---~~~~~~~~~~~i~~D~~~~~-----l----  181 (442)
T PLN02206        114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENV---MHHFSNPNFELIRHDVVEPI-----L----  181 (442)
T ss_pred             ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhh---hhhccCCceEEEECCccChh-----h----
Confidence            44557889999999999999999999999999999887532211111   11111346778889987652     1    


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                         ..+|+|||.|+...+..  ...+....+++|+.|+.++.+++...
T Consensus       182 ---~~~D~ViHlAa~~~~~~--~~~~p~~~~~~Nv~gt~nLleaa~~~  224 (442)
T PLN02206        182 ---LEVDQIYHLACPASPVH--YKFNPVKTIKTNVVGTLNMLGLAKRV  224 (442)
T ss_pred             ---cCCCEEEEeeeecchhh--hhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence               25899999999754321  11234678999999999999988654

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.79  E-value=2.2e-08  Score=91.54  Aligned_cols=103  Identities=18%  Similarity=0.085  Sum_probs=79.2

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      ||||||+|.||.+++++|.++|++|+.++|.........         ..+.++.+|+++.+.+.++++..    .  |+
T Consensus         3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~----~--d~   67 (314)
T COG0451           3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDRDLVDELAKGV----P--DA   67 (314)
T ss_pred             EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc---------cccceeeecccchHHHHHHHhcC----C--CE
Confidence            999999999999999999999999999999765533221         25678899999985555544421    1  99


Q ss_pred             EEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         206 LVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       206 lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      +||+|+.......... .....+.+|+.|+.++++++..
T Consensus        68 vih~aa~~~~~~~~~~-~~~~~~~~nv~gt~~ll~aa~~  105 (314)
T COG0451          68 VIHLAAQSSVPDSNAS-DPAEFLDVNVDGTLNLLEAARA  105 (314)
T ss_pred             EEEccccCchhhhhhh-CHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998643222222 4567899999999999999976

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.77  E-value=2.8e-08  Score=90.23  Aligned_cols=84  Identities=25%  Similarity=0.275  Sum_probs=65.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCCh---hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCR-VILACRSL---DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      .++++|+++|+|| ||+|++++..|++.|++ |++++|+.   ++++++.+++...  ...+.+..+|+++.++++..++
T Consensus       122 ~~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~--~~~~~~~~~d~~~~~~~~~~~~  198 (289)
T PRK12548        122 VDVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE--VPECIVNVYDLNDTEKLKAEIA  198 (289)
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc--CCCceeEEechhhhhHHHhhhc
Confidence            3578999999999 69999999999999996 99999986   6677766666543  2345566788887777655443


Q ss_pred             HHHHhcCCccEEEEcccc
Q psy4246         195 EYQKKFRSLNILVLNAGV  212 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~  212 (328)
                             ..|+||||..+
T Consensus       199 -------~~DilINaTp~  209 (289)
T PRK12548        199 -------SSDILVNATLV  209 (289)
T ss_pred             -------cCCEEEEeCCC
Confidence                   46999999865

>PRK05865 hypothetical protein; Provisional

Probab=98.77  E-value=3.8e-08  Score=100.47  Aligned_cols=91  Identities=15%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +++||||+|+||.+++++|+++|++|++++|+....      +     ..++.++.+|++|.+++.++++       .+|
T Consensus         2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~-----~~~v~~v~gDL~D~~~l~~al~-------~vD   63 (854)
T PRK05865          2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------W-----PSSADFIAADIRDATAVESAMT-------GAD   63 (854)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------c-----ccCceEEEeeCCCHHHHHHHHh-------CCC
Confidence            599999999999999999999999999999874321      1     1257789999999998887765       489


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      +|||+|+...+           .+++|+.++.++++++..
T Consensus        64 ~VVHlAa~~~~-----------~~~vNv~GT~nLLeAa~~   92 (854)
T PRK05865         64 VVAHCAWVRGR-----------NDHINIDGTANVLKAMAE   92 (854)
T ss_pred             EEEECCCcccc-----------hHHHHHHHHHHHHHHHHH
Confidence            99999986432           467899999888777643

>PLN02778 3,5-epimerase/4-reductase

Probab=98.74  E-value=7.4e-08  Score=88.00  Aligned_cols=91  Identities=15%  Similarity=0.055  Sum_probs=68.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      +++|||||+|.||.++++.|+++|++|++..                          .|+++.+.+...++..     ++
T Consensus        10 ~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~--------------------------~~~~~~~~v~~~l~~~-----~~   58 (298)
T PLN02778         10 LKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS--------------------------GRLENRASLEADIDAV-----KP   58 (298)
T ss_pred             CeEEEECCCCHHHHHHHHHHHhCCCEEEEec--------------------------CccCCHHHHHHHHHhc-----CC
Confidence            5799999999999999999999999987432                          2344555555544432     68


Q ss_pred             cEEEEccccCCCC-CCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         204 NILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       204 d~lvnnAg~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      |+|||+||..... .+...++-...+++|+.|+.++++++...
T Consensus        59 D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~  101 (298)
T PLN02778         59 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER  101 (298)
T ss_pred             CEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999986432 12233455788999999999999998664

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=98.70  E-value=6.9e-08  Score=86.03  Aligned_cols=116  Identities=20%  Similarity=0.214  Sum_probs=89.8

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      +||||++|-+|.++++.|. .+.+|+.++|..                       +|++|.+.+.+++.+.     ++|+
T Consensus         3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-----------------------~Ditd~~~v~~~i~~~-----~PDv   53 (281)
T COG1091           3 ILITGANGQLGTELRRALP-GEFEVIATDRAE-----------------------LDITDPDAVLEVIRET-----RPDV   53 (281)
T ss_pred             EEEEcCCChHHHHHHHHhC-CCceEEeccCcc-----------------------ccccChHHHHHHHHhh-----CCCE
Confidence            8999999999999999999 668999887752                       8999999999999987     8999


Q ss_pred             EEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---cccc---eecc--------cccchhhhccCccc
Q psy4246         206 LVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKLF---ARQQ--------GAATSIYCATSLDL  271 (328)
Q Consensus       206 lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~~---~~~~--------~~~~~~y~ask~al  271 (328)
                      +||+|++..  .+..+.+-+..+.+|..|+.++.+++...=..-   |+-+   |..+        ..+..+|+.||.+-
T Consensus        54 VIn~AAyt~--vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl~G  131 (281)
T COG1091          54 VINAAAYTA--VDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAG  131 (281)
T ss_pred             EEECccccc--cccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCCCCCCChhhhhHHHHHH
Confidence            999999863  334455568899999999999999995532111   2111   1111        23567899999876


Q ss_pred             c
Q psy4246         272 S  272 (328)
Q Consensus       272 ~  272 (328)
                      +
T Consensus       132 E  132 (281)
T COG1091         132 E  132 (281)
T ss_pred             H
Confidence            6

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.70  E-value=1e-07  Score=91.55  Aligned_cols=108  Identities=10%  Similarity=0.038  Sum_probs=77.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -+.++||||||+|.||.++++.|+++|++|++++|...........+.   ...++.++..|+.+..     +       
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~---~~~~~~~~~~Di~~~~-----~-------  182 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLF---GNPRFELIRHDVVEPI-----L-------  182 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhc---cCCceEEEECcccccc-----c-------
Confidence            355679999999999999999999999999999875322111111111   1236778888987542     1       


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      .++|+|||+|+...+...  ..+-...+++|+.|+.+++.++...
T Consensus       183 ~~~D~ViHlAa~~~~~~~--~~~p~~~~~~Nv~gT~nLleaa~~~  225 (436)
T PLN02166        183 LEVDQIYHLACPASPVHY--KYNPVKTIKTNVMGTLNMLGLAKRV  225 (436)
T ss_pred             cCCCEEEECceeccchhh--ccCHHHHHHHHHHHHHHHHHHHHHh
Confidence            258999999997543211  1234678999999999999888654

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=98.69  E-value=2.9e-08  Score=90.18  Aligned_cols=118  Identities=22%  Similarity=0.271  Sum_probs=82.0

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+|-||.++++.|.++|++|+.++|+                       .+|++|.+++.+++++.     ++|
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-----------------------~~dl~d~~~~~~~~~~~-----~pd   53 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIATSRS-----------------------DLDLTDPEAVAKLLEAF-----KPD   53 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-----------------------CS-TTSHHHHHHHHHHH-------S
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-----------------------hcCCCCHHHHHHHHHHh-----CCC
Confidence            68999999999999999999999999998776                       58999999999999876     699


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---ccc--c-ee--------cccccchhhhccCcc
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKL--F-AR--------QQGAATSIYCATSLD  270 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~--~-~~--------~~~~~~~~y~ask~a  270 (328)
                      +|||+||+..  .+..+.+-+..+.+|+.++..|++.+...-.+-   ||.  + |.        ....+...|+-+|..
T Consensus        54 ~Vin~aa~~~--~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~~~~~y~E~d~~~P~~~YG~~K~~  131 (286)
T PF04321_consen   54 VVINCAAYTN--VDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGDKGGPYTEDDPPNPLNVYGRSKLE  131 (286)
T ss_dssp             EEEE--------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SSTSSSB-TTS----SSHHHHHHHH
T ss_pred             eEeccceeec--HHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCCcccccccCCCCCCCCHHHHHHHH
Confidence            9999999852  223445567889999999999999986532111   222  1 11        112235678888887


Q ss_pred             cc
Q psy4246         271 LS  272 (328)
Q Consensus       271 l~  272 (328)
                      .+
T Consensus       132 ~E  133 (286)
T PF04321_consen  132 GE  133 (286)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.68  E-value=8.3e-08  Score=80.89  Aligned_cols=71  Identities=28%  Similarity=0.257  Sum_probs=62.8

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      |+|+||+|.+|..++++|+++|++|+++.|+.++.++          ..++..+.+|+.|++++.+++.       +.|+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~-------~~d~   63 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALK-------GADA   63 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHT-------TSSE
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhh-------hcch
Confidence            6899999999999999999999999999999887655          3478999999999988777665       6899


Q ss_pred             EEEccccC
Q psy4246         206 LVLNAGVF  213 (328)
Q Consensus       206 lvnnAg~~  213 (328)
                      +|+++|..
T Consensus        64 vi~~~~~~   71 (183)
T PF13460_consen   64 VIHAAGPP   71 (183)
T ss_dssp             EEECCHST
T ss_pred             hhhhhhhh
Confidence            99999864

...

>PLN02996 fatty acyl-CoA reductase

Probab=98.65  E-value=2.1e-07  Score=90.72  Aligned_cols=112  Identities=13%  Similarity=0.134  Sum_probs=79.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC---eEEEeeCChhH---HHHHHHHH---------HhhCC-------CCeEEE
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC---RVILACRSLDK---ANDAISKI---------LTEKP-------SAQCIA  178 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga---~Vi~~~r~~~~---~~~~~~~l---------~~~~~-------~~~~~~  178 (328)
                      ++||+++||||+|.||..+++.|++.+.   +|+++.|....   .+.+..++         ....+       ..++.+
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            6899999999999999999999998653   67888886431   11111111         11111       147899


Q ss_pred             EEcccCCH-------HHHHHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         179 MELNLCRL-------KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       179 ~~~Dls~~-------~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      +.+|++++       +.++.+++       .+|+|||+|+.....     +..+..+++|+.|+.++++++..
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~~~-----~~~~~~~~~Nv~gt~~ll~~a~~  149 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTNFD-----ERYDVALGINTLGALNVLNFAKK  149 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccCCc-----CCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999843       33444433       589999999976421     34677899999999999988854

>KOG0940|consensus

Probab=98.65  E-value=7e-08  Score=88.95  Aligned_cols=134  Identities=21%  Similarity=0.275  Sum_probs=93.0

Q ss_pred             CCCCCCCCCCCCccccceecCCC---cEEEEeCcCC-ccccCCCCCCcccc-------ccCCC-CCCCeeeeeCCCcEEE
Q psy4246           7 ALPDSDSEDELPPGWEERVTADG---CVYYVNHATE-GTQWTHPRTGVKKK-------VSGDL-PLGWEKSVSEDGKITF   74 (328)
Q Consensus         7 ~~~~~~~~~~lp~~w~~~~~~~g---~~~~~~~~~~-~t~w~~p~~~~~~~-------~~~~l-p~gw~~~~~~~g~~yy   74 (328)
                      ...+..+.+.||.+|+...+.+|   ..||++|.++ .|+|.+|..+..+.       +.+.+ -.+|++.+++.|.+||
T Consensus        51 ~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g~r~F  130 (358)
T KOG0940|consen   51 KGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTGQRPF  130 (358)
T ss_pred             ccccccccCCCCcceeeeeccccCCcceeeeeecccccccccCCccCCCCCcccccccccccccccceeeEecCCCceeh
Confidence            34567678889999999999999   9999999999 59999999984442       12222 1289999999999999


Q ss_pred             EeccCcccccCCCccchhhcccCCCcccccccCCCCc----cchhccCCCCCCceEEEcCCCCCccHHHHHH
Q psy4246          75 YNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTK----ALQILHGRDLSNYNAIVTGANTGIGFETARS  142 (328)
Q Consensus        75 ~n~~~~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~l~~k~~lITGas~GIG~a~a~~  142 (328)
                      ++|..++++|-||+.....+-+.....  ...+....    ............+....+|++..++.+=++.
T Consensus       131 ~~~i~~ktt~ldd~e~~d~e~~~s~~~--~~en~~~~~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~  200 (358)
T KOG0940|consen  131 YKHILKKTTTLDDREAVDPEFYNSLTW--IRENDPTNDLTFSVESEVLGQITTQELKPNGANIQVTEENKKE  200 (358)
T ss_pred             hhhhhcCccccCchhhcCccccccccc--cccCCcccchhhhcchhhcCCccceeecCCCcccccccccHHH
Confidence            999999999999987743333222221  11111111    1112223345666777888888877665554

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=98.64  E-value=4.2e-08  Score=85.99  Aligned_cols=143  Identities=16%  Similarity=0.028  Sum_probs=103.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHh--hCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILT--EKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +|++||||-+|--|.-+|+.|++.|+.|..+.|.........-.|..  ...+.++.++.+|++|...+.++++.+    
T Consensus         2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v----   77 (345)
T COG1089           2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV----   77 (345)
T ss_pred             CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc----
Confidence            68999999999999999999999999999988764322111001111  112457999999999999999999987    


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccce---------ecccccchh
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFA---------RQQGAATSI  263 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~---------~~~~~~~~~  263 (328)
                       ++|-+.|-|+-.  +...+.+.-..+.+++..|+.+|..++.-+-.+.        |-++|         ..+.-+.+.
T Consensus        78 -~PdEIYNLaAQS--~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSP  154 (345)
T COG1089          78 -QPDEIYNLAAQS--HVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSP  154 (345)
T ss_pred             -Cchhheeccccc--cccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCCCCCCH
Confidence             799999998853  3344556667889999999999998875443212        22233         233446788


Q ss_pred             hhccCcccc
Q psy4246         264 YCATSLDLS  272 (328)
Q Consensus       264 y~ask~al~  272 (328)
                      |+++|..-.
T Consensus       155 YAvAKlYa~  163 (345)
T COG1089         155 YAVAKLYAY  163 (345)
T ss_pred             HHHHHHHHH
Confidence            999986543

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.64  E-value=6.8e-08  Score=90.81  Aligned_cols=79  Identities=16%  Similarity=0.285  Sum_probs=61.6

Q ss_pred             CCCCCceEEEcCC---------------CCC-ccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcc
Q psy4246         119 RDLSNYNAIVTGA---------------NTG-IGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELN  182 (328)
Q Consensus       119 ~~l~~k~~lITGa---------------s~G-IG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D  182 (328)
                      .+|+||++|||||               ||| +|.++|+.|+.+|++|++++++....          . ...  ...+|
T Consensus       181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~----------~-~~~--~~~~~  247 (390)
T TIGR00521       181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL----------T-PPG--VKSIK  247 (390)
T ss_pred             cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC----------C-CCC--cEEEE
Confidence            4689999999999               667 99999999999999999988764320          1 111  25689


Q ss_pred             cCCHHHH-HHHHHHHHHhcCCccEEEEccccC
Q psy4246         183 LCRLKSV-KKFAEEYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       183 ls~~~~v-~~~~~~~~~~~g~id~lvnnAg~~  213 (328)
                      +++.+++ ++++++   .++++|++|+|||+.
T Consensus       248 v~~~~~~~~~~~~~---~~~~~D~~i~~Aavs  276 (390)
T TIGR00521       248 VSTAEEMLEAALNE---LAKDFDIFISAAAVA  276 (390)
T ss_pred             eccHHHHHHHHHHh---hcccCCEEEEccccc
Confidence            9998888 555544   347899999999985

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>KOG3259|consensus

Probab=98.64  E-value=1.5e-08  Score=79.22  Aligned_cols=39  Identities=44%  Similarity=0.961  Sum_probs=34.4

Q ss_pred             CCCCCccccceec-CCCcEEEEeCcCCccccCCCCCCccc
Q psy4246          14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHPRTGVKK   52 (328)
Q Consensus        14 ~~~lp~~w~~~~~-~~g~~~~~~~~~~~t~w~~p~~~~~~   52 (328)
                      ++.||++||++++ +.||+||+||.|+.+||+.|....+.
T Consensus         4 ~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~~   43 (163)
T KOG3259|consen    4 EEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSKS   43 (163)
T ss_pred             cccCCchhheeccccCCCcceeccccchhhccCCCccccc
Confidence            4669999999997 89999999999999999999865443

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=98.63  E-value=9.8e-08  Score=87.07  Aligned_cols=91  Identities=18%  Similarity=0.110  Sum_probs=69.9

Q ss_pred             EEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccEE
Q psy4246         127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNIL  206 (328)
Q Consensus       127 lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~l  206 (328)
                      |||||+|.||..+++.|+++|++|+++.+.                      ..+|+++.++++++++..     ++|+|
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~----------------------~~~Dl~~~~~l~~~~~~~-----~~d~V   53 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH----------------------KELDLTRQADVEAFFAKE-----KPTYV   53 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc----------------------ccCCCCCHHHHHHHHhcc-----CCCEE
Confidence            699999999999999999999988766432                      148999999888877653     68999


Q ss_pred             EEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         207 VLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       207 vnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      ||+|+....... ..+.....+++|+.++.++++++...
T Consensus        54 ih~A~~~~~~~~-~~~~~~~~~~~n~~~~~~ll~~~~~~   91 (306)
T PLN02725         54 ILAAAKVGGIHA-NMTYPADFIRENLQIQTNVIDAAYRH   91 (306)
T ss_pred             EEeeeeecccch-hhhCcHHHHHHHhHHHHHHHHHHHHc
Confidence            999997532111 11223457889999999999998654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.62  E-value=2.9e-07  Score=78.68  Aligned_cols=85  Identities=21%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +.++++++++|+||+|++|+++++.|+++|++|++++|+.++++...+.+....   ......+|+.+.+++.+++.   
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~---   96 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF---GEGVGAVETSDDAARAAAIK---   96 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc---CCcEEEeeCCCHHHHHHHHh---
Confidence            447899999999999999999999999999999999999988887777664332   23345678888777766553   


Q ss_pred             HhcCCccEEEEcccc
Q psy4246         198 KKFRSLNILVLNAGV  212 (328)
Q Consensus       198 ~~~g~id~lvnnAg~  212 (328)
                          +.|++|++...
T Consensus        97 ----~~diVi~at~~  107 (194)
T cd01078          97 ----GADVVFAAGAA  107 (194)
T ss_pred             ----cCCEEEECCCC
Confidence                57988886654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.62  E-value=1.5e-07  Score=85.13  Aligned_cols=100  Identities=15%  Similarity=0.021  Sum_probs=69.9

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      +|||||+|.||.++++.|+++|++|++++|+........          ...  ..|+.. .       ...+.+..+|+
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~--~~~~~~-~-------~~~~~~~~~D~   60 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK----------WEG--YKPWAP-L-------AESEALEGADA   60 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc----------cee--eecccc-c-------chhhhcCCCCE
Confidence            689999999999999999999999999999876432110          000  112221 1       11233457999


Q ss_pred             EEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         206 LVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       206 lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      |||+||..........+.....+++|+.++.++++++...
T Consensus        61 Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~  100 (292)
T TIGR01777        61 VINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA  100 (292)
T ss_pred             EEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc
Confidence            9999997532233445566778899999999988888543

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02503 fatty acyl-CoA reductase 2

Probab=98.60  E-value=4.3e-07  Score=89.89  Aligned_cols=112  Identities=13%  Similarity=0.206  Sum_probs=80.2

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC---eEEEeeCChhH---HHHHHHHH---------HhhCC-------CCeEEE
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC---RVILACRSLDK---ANDAISKI---------LTEKP-------SAQCIA  178 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga---~Vi~~~r~~~~---~~~~~~~l---------~~~~~-------~~~~~~  178 (328)
                      ++||+|+||||+|.||..+++.|++.+.   +|+++.|....   .+....++         .+..+       ..++.+
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            6899999999999999999999998764   67888885432   12221222         22211       247899


Q ss_pred             EEcccCCHH------HHHHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         179 MELNLCRLK------SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       179 ~~~Dls~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      +..|++++.      ..+.+.       ..+|+|||+|+....     .+.++..+++|+.|+.++++.+..
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~-------~~vDiVIH~AA~v~f-----~~~~~~a~~vNV~GT~nLLelA~~  256 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIA-------KEVDVIINSAANTTF-----DERYDVAIDINTRGPCHLMSFAKK  256 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHH-------hcCCEEEECcccccc-----ccCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999873      223222       259999999998641     135678899999999999988754

>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet

Probab=98.58  E-value=5.5e-08  Score=57.01  Aligned_cols=30  Identities=37%  Similarity=0.813  Sum_probs=28.3

Q ss_pred             CCCCCeeeeeCC-CcEEEEeccCcccccCCC
Q psy4246          58 LPLGWEKSVSED-GKITFYNKDTHVKTYTDP   87 (328)
Q Consensus        58 lp~gw~~~~~~~-g~~yy~n~~~~~~~~~~P   87 (328)
                      ||.||++..+.+ |+.||+|+.+++++|+.|
T Consensus         1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P   31 (31)
T PF00397_consen    1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP   31 (31)
T ss_dssp             SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred             CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence            799999999876 999999999999999988

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....

>PRK07201 short chain dehydrogenase; Provisional

Probab=98.56  E-value=6.6e-07  Score=90.53  Aligned_cols=110  Identities=15%  Similarity=0.056  Sum_probs=76.6

Q ss_pred             eEEEcCCCCCccHHHHHHHH--HCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHH--HHHHHHHHHhc
Q psy4246         125 NAIVTGANTGIGFETARSLA--LHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSV--KKFAEEYQKKF  200 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la--~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v--~~~~~~~~~~~  200 (328)
                      ++|||||+|.||.++++.|+  .+|++|++++|+... .. ...+.......++.++.+|++|++..  ...++.+    
T Consensus         2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~-~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l----   75 (657)
T PRK07201          2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SR-LEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL----   75 (657)
T ss_pred             eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HH-HHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh----
Confidence            59999999999999999999  589999999996432 11 12222221124788999999985321  1122222    


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      .++|++||+||.....  .   .....+++|+.|+.++++++...
T Consensus        76 ~~~D~Vih~Aa~~~~~--~---~~~~~~~~nv~gt~~ll~~a~~~  115 (657)
T PRK07201         76 GDIDHVVHLAAIYDLT--A---DEEAQRAANVDGTRNVVELAERL  115 (657)
T ss_pred             cCCCEEEECceeecCC--C---CHHHHHHHHhHHHHHHHHHHHhc
Confidence            4799999999975321  1   23556789999999998887553

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.55  E-value=3.2e-07  Score=80.43  Aligned_cols=97  Identities=15%  Similarity=0.202  Sum_probs=66.6

Q ss_pred             ceEEEcCCCCC-ccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTG-IGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~G-IG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      .+-.||+.|+| ||.++|+.|+++|++|++++|+...        .. .+...+.++.++     +.+++.+.+.+.++.
T Consensus        16 ~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~--------~~-~~~~~v~~i~v~-----s~~~m~~~l~~~~~~   81 (229)
T PRK06732         16 SVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAV--------KP-EPHPNLSIIEIE-----NVDDLLETLEPLVKD   81 (229)
T ss_pred             CceeecCccchHHHHHHHHHHHhCCCEEEEEECcccc--------cC-CCCCCeEEEEEe-----cHHHHHHHHHHHhcC
Confidence            46678888876 9999999999999999999876421        00 011244555542     233344444445568


Q ss_pred             ccEEEEccccCC--CCCCCChhHHHHHHhhhhHH
Q psy4246         203 LNILVLNAGVFG--LGFSHTEDGFETTFQVNHLA  234 (328)
Q Consensus       203 id~lvnnAg~~~--~~~~~~~~~~~~~~~vN~~g  234 (328)
                      +|+||||||+..  +....+.++|..++++|.+.
T Consensus        82 ~DivIh~AAvsd~~~~~~~~~~~~~~~~~v~~~~  115 (229)
T PRK06732         82 HDVLIHSMAVSDYTPVYMTDLEEVSASDNLNEFL  115 (229)
T ss_pred             CCEEEeCCccCCceehhhhhhhhhhhhhhhhhhh
Confidence            999999999853  44556778889988887654

>smart00456 WW Domain with 2 conserved Trp (W) residues

Probab=98.47  E-value=1.8e-07  Score=55.28  Aligned_cols=31  Identities=39%  Similarity=0.866  Sum_probs=29.8

Q ss_pred             CCCCCeeeeeCCCcEEEEeccCcccccCCCc
Q psy4246          58 LPLGWEKSVSEDGKITFYNKDTHVKTYTDPR   88 (328)
Q Consensus        58 lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~   88 (328)
                      ||.||++..+.+|+.||+|+.+++++|+.|+
T Consensus         1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~   31 (32)
T smart00456        1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR   31 (32)
T ss_pred             CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence            6999999999999999999999999999996

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=98.46  E-value=3e-07  Score=81.71  Aligned_cols=108  Identities=12%  Similarity=0.069  Sum_probs=64.7

Q ss_pred             EcCCCCCccHHHHHHHHHCCC--eEEEeeCChhH---HHHHHHHHHhhC--------CCCeEEEEEcccCCHH-HH-HHH
Q psy4246         128 VTGANTGIGFETARSLALHGC--RVILACRSLDK---ANDAISKILTEK--------PSAQCIAMELNLCRLK-SV-KKF  192 (328)
Q Consensus       128 ITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~---~~~~~~~l~~~~--------~~~~~~~~~~Dls~~~-~v-~~~  192 (328)
                      ||||+|.||..+.++|++++.  +|+++.|..+.   .+.+.+.+....        ...++.++.+|++++. .+ ...
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999986  89999997643   222212211110        1458999999999865 11 112


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHH
Q psy4246         193 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLE  243 (328)
Q Consensus       193 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  243 (328)
                      .+.+.   ..+|++||||+......     .++..+++|+.|+..+++.+.
T Consensus        81 ~~~L~---~~v~~IiH~Aa~v~~~~-----~~~~~~~~NV~gt~~ll~la~  123 (249)
T PF07993_consen   81 YQELA---EEVDVIIHCAASVNFNA-----PYSELRAVNVDGTRNLLRLAA  123 (249)
T ss_dssp             HHHHH---HH--EEEE--SS-SBS------S--EEHHHHHHHHHHHHHHHT
T ss_pred             hhccc---cccceeeecchhhhhcc-----cchhhhhhHHHHHHHHHHHHH
Confidence            22222   25899999999763222     344578899999999998885

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.46  E-value=8.9e-07  Score=89.82  Aligned_cols=93  Identities=15%  Similarity=0.027  Sum_probs=73.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ..+++|||||+|-||.++++.|.++|++|..                          ...|++|.+.+..++...     
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~--------------------------~~~~l~d~~~v~~~i~~~-----  427 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEY--------------------------GKGRLEDRSSLLADIRNV-----  427 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCeEEe--------------------------eccccccHHHHHHHHHhh-----
Confidence            3457999999999999999999999988731                          123577888877776654     


Q ss_pred             CccEEEEccccCCCC-CCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       202 ~id~lvnnAg~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      ++|+|||+|+..... .+..+++-...+++|+.|+.++++++...
T Consensus       428 ~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~  472 (668)
T PLN02260        428 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN  472 (668)
T ss_pred             CCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc
Confidence            699999999986432 33445566788999999999999998664

>KOG1430|consensus

Probab=98.41  E-value=8.3e-07  Score=81.94  Aligned_cols=115  Identities=13%  Similarity=0.096  Sum_probs=82.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++.+++||||+|-||++++++|.++|  .+|.++|.......- ..+.... ...++.++.+|+.|..++.+.+.     
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~-~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~-----   75 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNL-PAELTGF-RSGRVTVILGDLLDANSISNAFQ-----   75 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCcccccc-chhhhcc-cCCceeEEecchhhhhhhhhhcc-----
Confidence            57799999999999999999999999  689988876532111 1111111 14688999999999888777665     


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  248 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~  248 (328)
                        +. .+||+|+...+  ..-..+-+..+++|+.|+-+++..+...=.+
T Consensus        76 --~~-~Vvh~aa~~~~--~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~  119 (361)
T KOG1430|consen   76 --GA-VVVHCAASPVP--DFVENDRDLAMRVNVNGTLNVIEACKELGVK  119 (361)
T ss_pred             --Cc-eEEEeccccCc--cccccchhhheeecchhHHHHHHHHHHhCCC
Confidence              55 77777765322  2223356788999999999988888665433

>KOG3209|consensus

Probab=98.39  E-value=4.3e-07  Score=87.78  Aligned_cols=84  Identities=24%  Similarity=0.321  Sum_probs=71.7

Q ss_pred             CCCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCCcccc------------------------------------
Q psy4246          10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKK------------------------------------   53 (328)
Q Consensus        10 ~~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~------------------------------------   53 (328)
                      ..|.+..||++|++.+...+.-|+++|++..++|+++++.-...                                    
T Consensus       126 ~~d~~~~~~~~~~es~~kr~~sy~~m~n~g~~~~eeeee~d~g~~n~~~~~~~~E~~e~s~~~s~~m~ssy~aPsts~s~  205 (984)
T KOG3209|consen  126 LTDQELLLPPNSAESYRKRTKSYSIMENAGITTPEEEEEEDPGWENGSGQNYSVEMEESSYPTSSDMPSSYFAPSTSQST  205 (984)
T ss_pred             eecccccCCCcchhcccccCcceeehhccCCCCcccccccCccccccCCcccchhhhhccCCccCCCcccccccccCCCC
Confidence            35667889999999999999999999999999999988642100                                    


Q ss_pred             -------------ccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchhh
Q psy4246          54 -------------VSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAK   93 (328)
Q Consensus        54 -------------~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~~   93 (328)
                                   -.++||..|++.++++|.+||+||.++.++|-|||+...+
T Consensus       206 ~~~~~~~~~~~e~~~gplp~nwemayte~gevyfiDhntkttswLdprl~kka  258 (984)
T KOG3209|consen  206 TPMDRYSPATQEDNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKA  258 (984)
T ss_pred             CcccccCccccccccCCCCccceEeEeecCeeEeeecccccceecChhhhccc
Confidence                         0266999999999999999999999999999999976544

>PRK12320 hypothetical protein; Provisional

Probab=98.38  E-value=1.7e-06  Score=86.79  Aligned_cols=91  Identities=15%  Similarity=0.038  Sum_probs=69.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +||||||+|.||.+++++|.++|++|++++|.....         .  ...+.++.+|+++.. +.+++       .++|
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~---------~--~~~ve~v~~Dl~d~~-l~~al-------~~~D   62 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA---------L--DPRVDYVCASLRNPV-LQELA-------GEAD   62 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc---------c--cCCceEEEccCCCHH-HHHHh-------cCCC
Confidence            599999999999999999999999999999864321         0  235778999999873 33332       3689


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      ++||+|+....      +    ...+|+.|+.++++++..
T Consensus        63 ~VIHLAa~~~~------~----~~~vNv~Gt~nLleAA~~   92 (699)
T PRK12320         63 AVIHLAPVDTS------A----PGGVGITGLAHVANAAAR   92 (699)
T ss_pred             EEEEcCccCcc------c----hhhHHHHHHHHHHHHHHH
Confidence            99999986411      1    125799999999888744

>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function

Probab=98.37  E-value=3e-06  Score=76.32  Aligned_cols=121  Identities=12%  Similarity=0.100  Sum_probs=95.9

Q ss_pred             CceEEEcCC-CCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         123 NYNAIVTGA-NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       123 ~k~~lITGa-s~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .++|||.|. ..-|++.+|..|-++|+-|+++..+.+..+....+    . ...+.....|..++.++...+.++.+.+.
T Consensus         3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e----~-~~dI~~L~ld~~~~~~~~~~l~~f~~~L~   77 (299)
T PF08643_consen    3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESE----D-RPDIRPLWLDDSDPSSIHASLSRFASLLS   77 (299)
T ss_pred             eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhc----c-CCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence            467889996 68999999999999999999999987664443322    1 23577788888888888888877776554


Q ss_pred             --------------CccEEEEcccc---CCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q psy4246         202 --------------SLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  248 (328)
Q Consensus       202 --------------~id~lvnnAg~---~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~  248 (328)
                                    ++..||.....   .+|.+.++.+.|..+++.|+..++.++|.++|+|+.
T Consensus        78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~  141 (299)
T PF08643_consen   78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRS  141 (299)
T ss_pred             CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          34455544443   367789999999999999999999999999999998

One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.27  E-value=3.7e-06  Score=78.43  Aligned_cols=76  Identities=22%  Similarity=0.354  Sum_probs=64.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +.+||.|| |+||+.+|..|+++| .+|.+++|+.+++.++....     +.++.+.++|+.|.+++.+++++       
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~li~~-------   68 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVALIKD-------   68 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHHHhc-------
Confidence            56889999 999999999999999 89999999988877765443     34899999999999988887763       


Q ss_pred             ccEEEEcccc
Q psy4246         203 LNILVLNAGV  212 (328)
Q Consensus       203 id~lvnnAg~  212 (328)
                      .|++||++..
T Consensus        69 ~d~VIn~~p~   78 (389)
T COG1748          69 FDLVINAAPP   78 (389)
T ss_pred             CCEEEEeCCc
Confidence            3999999975

>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

Probab=98.27  E-value=1e-06  Score=51.56  Aligned_cols=30  Identities=40%  Similarity=0.945  Sum_probs=28.8

Q ss_pred             CCCCeeeeeCCCcEEEEeccCcccccCCCc
Q psy4246          59 PLGWEKSVSEDGKITFYNKDTHVKTYTDPR   88 (328)
Q Consensus        59 p~gw~~~~~~~g~~yy~n~~~~~~~~~~P~   88 (328)
                      |.||++..+.+|+.||+|+.+++++|+.|+
T Consensus         1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~   30 (31)
T cd00201           1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR   30 (31)
T ss_pred             CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence            789999999999999999999999999996

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=98.25  E-value=1.3e-06  Score=79.08  Aligned_cols=76  Identities=13%  Similarity=0.109  Sum_probs=60.0

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC-c
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS-L  203 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~-i  203 (328)
                      +++||||+|.||.+++++|+++|++|.++.|+.++..           ...+..+.+|+.|++++..+++.. +.+.. +
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~-----------~~~~~~~~~d~~d~~~l~~a~~~~-~~~~g~~   68 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA-----------GPNEKHVKFDWLDEDTWDNPFSSD-DGMEPEI   68 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc-----------CCCCccccccCCCHHHHHHHHhcc-cCcCCce
Confidence            3899999999999999999999999999999876431           113456788999999998887543 22334 8


Q ss_pred             cEEEEcccc
Q psy4246         204 NILVLNAGV  212 (328)
Q Consensus       204 d~lvnnAg~  212 (328)
                      |.++++++.
T Consensus        69 d~v~~~~~~   77 (285)
T TIGR03649        69 SAVYLVAPP   77 (285)
T ss_pred             eEEEEeCCC
Confidence            999988764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>KOG1202|consensus

Probab=98.21  E-value=1.9e-06  Score=87.75  Aligned_cols=148  Identities=17%  Similarity=0.176  Sum_probs=118.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHH---HHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKAN---DAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~---~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..|.++|+||-||.|+++|..|..+|+ ++++++|+.-+.-   ..+......  |.++..-..|++..+..+.++++. 
T Consensus      1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~--GVqV~vsT~nitt~~ga~~Li~~s- 1843 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRR--GVQVQVSTSNITTAEGARGLIEES- 1843 (2376)
T ss_pred             ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhc--CeEEEEecccchhhhhHHHHHHHh-
Confidence            578999999999999999999999999 5888888754322   122333333  778888888999999999998876 


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh------ccccceecccccchhhhccCc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK------GAKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~------~ss~~~~~~~~~~~~y~ask~  269 (328)
                      .+.+.+-+++|-|.+.  +.+++.+++.|..+-+-.+.|+.+|-+.-..+-..      -||+..-++..++..|+-+..
T Consensus      1844 ~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~GQtNYG~aNS 1923 (2376)
T KOG1202|consen 1844 NKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAGQTNYGLANS 1923 (2376)
T ss_pred             hhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCcccccchhhH
Confidence            4568999999999986  55789999999999999999999887665443222      288887888899999999988


Q ss_pred             ccc
Q psy4246         270 DLS  272 (328)
Q Consensus       270 al~  272 (328)
                      +++
T Consensus      1924 ~ME 1926 (2376)
T KOG1202|consen 1924 AME 1926 (2376)
T ss_pred             HHH
Confidence            877

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.20  E-value=4.9e-06  Score=80.45  Aligned_cols=77  Identities=21%  Similarity=0.280  Sum_probs=59.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +|++|+++|+|+++ +|.++|+.|+++|++|++++++. +.+++...++...    .+.++..|..+            +
T Consensus         2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~------------~   64 (450)
T PRK14106          2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL----GIELVLGEYPE------------E   64 (450)
T ss_pred             CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCcch------------h
Confidence            57899999999877 99999999999999999999875 3444444555332    34567777765            1


Q ss_pred             hcCCccEEEEccccC
Q psy4246         199 KFRSLNILVLNAGVF  213 (328)
Q Consensus       199 ~~g~id~lvnnAg~~  213 (328)
                      ..+.+|+||+++|+.
T Consensus        65 ~~~~~d~vv~~~g~~   79 (450)
T PRK14106         65 FLEGVDLVVVSPGVP   79 (450)
T ss_pred             HhhcCCEEEECCCCC
Confidence            235799999999973

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=98.13  E-value=1.2e-05  Score=70.77  Aligned_cols=96  Identities=18%  Similarity=0.093  Sum_probs=60.0

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      |+||||+|-||++++.+|.+.|+.|+++.|+..+.+...        ...       +...+.+....+      .++|+
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~--------~~~-------v~~~~~~~~~~~------~~~Da   59 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL--------HPN-------VTLWEGLADALT------LGIDA   59 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc--------Ccc-------ccccchhhhccc------CCCCE
Confidence            589999999999999999999999999999976543321        001       111122222211      27999


Q ss_pred             EEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHH
Q psy4246         206 LVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQL  242 (328)
Q Consensus       206 lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~  242 (328)
                      |||-||..-.....+.+.=+..++.-+..+-.|...+
T Consensus        60 vINLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I   96 (297)
T COG1090          60 VINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELI   96 (297)
T ss_pred             EEECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            9999997422233455554555554444444444333

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.11  E-value=1.6e-05  Score=63.77  Aligned_cols=77  Identities=19%  Similarity=0.262  Sum_probs=58.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++++|.++|.|+ ||.|++++..|+..|++ |.++.|+.++++++.+++.    +..+.++..+  +   +....     
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~----~~~~~~~~~~--~---~~~~~-----   73 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG----GVNIEAIPLE--D---LEEAL-----   73 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT----GCSEEEEEGG--G---HCHHH-----
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC----ccccceeeHH--H---HHHHH-----
Confidence            689999999998 89999999999999986 9999999999888877771    3344444432  2   22222     


Q ss_pred             hcCCccEEEEccccC
Q psy4246         199 KFRSLNILVLNAGVF  213 (328)
Q Consensus       199 ~~g~id~lvnnAg~~  213 (328)
                        ...|++||+.+..
T Consensus        74 --~~~DivI~aT~~~   86 (135)
T PF01488_consen   74 --QEADIVINATPSG   86 (135)
T ss_dssp             --HTESEEEE-SSTT
T ss_pred             --hhCCeEEEecCCC
Confidence              2689999998875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=98.05  E-value=9.4e-05  Score=71.52  Aligned_cols=153  Identities=16%  Similarity=0.110  Sum_probs=100.4

Q ss_pred             CCCCCceEEEcCCC-CCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhC--CCCeEEEEEcccCCHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGAN-TGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEK--PSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       119 ~~l~~k~~lITGas-~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      ....+|++|||||+ +.||.+++..|+..|++||++..+- +...+..+.|-..+  .+..+.++.++.++..+|+.+++
T Consensus       392 ~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIe  471 (866)
T COG4982         392 GTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIE  471 (866)
T ss_pred             CCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHH
Confidence            35789999999999 6799999999999999999975443 33334444443332  36788999999999999999999


Q ss_pred             HHHHhcC--------------CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---ccccee
Q psy4246         195 EYQKKFR--------------SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKLFAR  255 (328)
Q Consensus       195 ~~~~~~g--------------~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~~~~  255 (328)
                      -|-..-.              .+|.+|--|+..  +.+.+... .-+..+.+-++...+|+-.+.++-..+   +.+...
T Consensus       472 wIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~ags-raE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVV  550 (866)
T COG4982         472 WIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGS-RAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVV  550 (866)
T ss_pred             HhccccccccCCcceecccccCcceeeecccCCccCccccCCc-hHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEE
Confidence            8864321              256777666652  32222222 234456666777777665554433222   111111


Q ss_pred             cc-------cccchhhhccCcccc
Q psy4246         256 QQ-------GAATSIYCATSLDLS  272 (328)
Q Consensus       256 ~~-------~~~~~~y~ask~al~  272 (328)
                      .+       ..+-.+|+-+|.++.
T Consensus       551 LPgSPNrG~FGgDGaYgEsK~ald  574 (866)
T COG4982         551 LPGSPNRGMFGGDGAYGESKLALD  574 (866)
T ss_pred             ecCCCCCCccCCCcchhhHHHHHH
Confidence            11       134578999999987

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.05  E-value=1.3e-05  Score=75.96  Aligned_cols=76  Identities=26%  Similarity=0.355  Sum_probs=59.7

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         126 AIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |+|.|| |.+|..+++.|++++-  +|++.+|+.++++++.+++    .+.++..+.+|+.|.+++.++++       +.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~-------~~   68 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAELLR-------GC   68 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHHHT-------TS
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHHHh-------cC
Confidence            689999 9999999999999974  8999999999888776655    25689999999999999888775       45


Q ss_pred             cEEEEccccC
Q psy4246         204 NILVLNAGVF  213 (328)
Q Consensus       204 d~lvnnAg~~  213 (328)
                      |+|||++|..
T Consensus        69 dvVin~~gp~   78 (386)
T PF03435_consen   69 DVVINCAGPF   78 (386)
T ss_dssp             SEEEE-SSGG
T ss_pred             CEEEECCccc
Confidence            9999999853

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK09620 hypothetical protein; Provisional

Probab=98.05  E-value=4.4e-06  Score=73.08  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=51.3

Q ss_pred             CCCceEEEcCCC----------------CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC
Q psy4246         121 LSNYNAIVTGAN----------------TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC  184 (328)
Q Consensus       121 l~~k~~lITGas----------------~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls  184 (328)
                      |+||.||||+|.                |-||.++|+.|+++|++|+++++.......   .+   ..+..+..+..|..
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~---~~---~~~~~~~~V~s~~d   74 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN---DI---NNQLELHPFEGIID   74 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc---cc---CCceeEEEEecHHH
Confidence            579999999886                889999999999999999988764221000   00   00223333444222


Q ss_pred             CHHHHHHHHHHHHHhcCCccEEEEccccC
Q psy4246         185 RLKSVKKFAEEYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       185 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~  213 (328)
                      ..+.+.+++    +. .++|++||+|++.
T Consensus        75 ~~~~l~~~~----~~-~~~D~VIH~AAvs   98 (229)
T PRK09620         75 LQDKMKSII----TH-EKVDAVIMAAAGS   98 (229)
T ss_pred             HHHHHHHHh----cc-cCCCEEEECcccc
Confidence            222222222    11 2689999999983

>KOG1429|consensus

Probab=98.03  E-value=1.1e-05  Score=71.04  Aligned_cols=111  Identities=11%  Similarity=0.076  Sum_probs=78.8

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ....++++++||||+|.||.++|..|..+|+.||++|--...-.......   .....+..+.-|+..+     ++.   
T Consensus        22 ~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~---~~~~~fel~~hdv~~p-----l~~---   90 (350)
T KOG1429|consen   22 VKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHW---IGHPNFELIRHDVVEP-----LLK---   90 (350)
T ss_pred             ccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchh---ccCcceeEEEeechhH-----HHH---
Confidence            34567899999999999999999999999999999885433222221111   1234677788887654     333   


Q ss_pred             HhcCCccEEEEccccCCCC-CCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         198 KKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                          .+|.++|-|...++. ....+   .+++..|+.|+.++..++.+..
T Consensus        91 ----evD~IyhLAapasp~~y~~np---vktIktN~igtln~lglakrv~  133 (350)
T KOG1429|consen   91 ----EVDQIYHLAAPASPPHYKYNP---VKTIKTNVIGTLNMLGLAKRVG  133 (350)
T ss_pred             ----HhhhhhhhccCCCCcccccCc---cceeeecchhhHHHHHHHHHhC
Confidence                468888999876543 22222   4678899999999988886655

>KOG1221|consensus

Probab=98.02  E-value=2.6e-05  Score=74.18  Aligned_cols=120  Identities=13%  Similarity=0.166  Sum_probs=82.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC---eEEEeeCChh---H--------HHHHHHHHHhhCCC--CeEEEEEcccC
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC---RVILACRSLD---K--------ANDAISKILTEKPS--AQCIAMELNLC  184 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga---~Vi~~~r~~~---~--------~~~~~~~l~~~~~~--~~~~~~~~Dls  184 (328)
                      ++||+++||||+|.+|+.+.+.|++.--   ++++.-|...   .        .+.+.+.+++..|.  .++..+.+|++
T Consensus        10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~   89 (467)
T KOG1221|consen   10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS   89 (467)
T ss_pred             hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence            6899999999999999999999998642   5666656431   1        12233444444332  47888999998


Q ss_pred             CHHH-HHHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy4246         185 RLKS-VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI  247 (328)
Q Consensus       185 ~~~~-v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~  247 (328)
                      +++- +..--.+  .....+|++||+|+....     .|-++..+.+|..|+.++.+.+.....
T Consensus        90 ~~~LGis~~D~~--~l~~eV~ivih~AAtvrF-----de~l~~al~iNt~Gt~~~l~lak~~~~  146 (467)
T KOG1221|consen   90 EPDLGISESDLR--TLADEVNIVIHSAATVRF-----DEPLDVALGINTRGTRNVLQLAKEMVK  146 (467)
T ss_pred             CcccCCChHHHH--HHHhcCCEEEEeeeeecc-----chhhhhhhhhhhHhHHHHHHHHHHhhh
Confidence            7652 2211111  112379999999997642     245677899999999999998866543

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=98.02  E-value=2e-05  Score=69.18  Aligned_cols=75  Identities=17%  Similarity=0.134  Sum_probs=58.0

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      |+|+||+|.+|+.+++.|++.|++|.++.|+...  ....++...    .+..+.+|+.|.+++.++++       ++|.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~--~~~~~l~~~----g~~vv~~d~~~~~~l~~al~-------g~d~   67 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS--DRAQQLQAL----GAEVVEADYDDPESLVAALK-------GVDA   67 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH--HHHHHHHHT----TTEEEES-TT-HHHHHHHHT-------TCSE
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch--hhhhhhhcc----cceEeecccCCHHHHHHHHc-------CCce
Confidence            6899999999999999999999999999998733  223344433    34567999999988877775       7899


Q ss_pred             EEEccccC
Q psy4246         206 LVLNAGVF  213 (328)
Q Consensus       206 lvnnAg~~  213 (328)
                      ||++.+..
T Consensus        68 v~~~~~~~   75 (233)
T PF05368_consen   68 VFSVTPPS   75 (233)
T ss_dssp             EEEESSCS
T ss_pred             EEeecCcc
Confidence            99888854

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN00016 RNA-binding protein; Provisional

Probab=97.96  E-value=2.2e-05  Score=74.12  Aligned_cols=79  Identities=22%  Similarity=0.242  Sum_probs=55.2

Q ss_pred             CCCceEEEc----CCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHH-------HHHHhhCCCCeEEEEEcccCCHHHH
Q psy4246         121 LSNYNAIVT----GANTGIGFETARSLALHGCRVILACRSLDKANDAI-------SKILTEKPSAQCIAMELNLCRLKSV  189 (328)
Q Consensus       121 l~~k~~lIT----Gas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~-------~~l~~~~~~~~~~~~~~Dls~~~~v  189 (328)
                      ...++||||    ||+|.||..+++.|+++|++|++++|+........       .++.    ...+.++.+|+.|   +
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~----~~~v~~v~~D~~d---~  122 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS----SAGVKTVWGDPAD---V  122 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh----hcCceEEEecHHH---H
Confidence            345789999    99999999999999999999999999865422110       1121    1236778888866   2


Q ss_pred             HHHHHHHHHhcCCccEEEEccc
Q psy4246         190 KKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       190 ~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ..++.     ..++|+||+++|
T Consensus       123 ~~~~~-----~~~~d~Vi~~~~  139 (378)
T PLN00016        123 KSKVA-----GAGFDVVYDNNG  139 (378)
T ss_pred             Hhhhc-----cCCccEEEeCCC
Confidence            22221     136888888875

>KOG4022|consensus

Probab=97.95  E-value=7.8e-05  Score=60.39  Aligned_cols=145  Identities=12%  Similarity=0.075  Sum_probs=98.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc-
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF-  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~-  200 (328)
                      +-.+++|-||-+.+|.+++..|-.+++-|.-++..++..            ...-..+..|-+--++-+.+++++.+.. 
T Consensus         2 sagrVivYGGkGALGSacv~~FkannywV~siDl~eNe~------------Ad~sI~V~~~~swtEQe~~v~~~vg~sL~   69 (236)
T KOG4022|consen    2 SAGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQ------------ADSSILVDGNKSWTEQEQSVLEQVGSSLQ   69 (236)
T ss_pred             CCceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccc------------ccceEEecCCcchhHHHHHHHHHHHHhhc
Confidence            345688999999999999999999999998888765321            1122345666666666677777776654 


Q ss_pred             -CCccEEEEccccCCCCCCCC---hhHHHHHHhhhhHHHHHHHHHHHHHHHhccc------cceecccccchhhhccCcc
Q psy4246         201 -RSLNILVLNAGVFGLGFSHT---EDGFETTFQVNHLAHFYLTLQLENALIKGAK------LFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 -g~id~lvnnAg~~~~~~~~~---~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss------~~~~~~~~~~~~y~ask~a  270 (328)
                       .++|.+++.||-+.....-+   ....+-++.-.++....-.+.+..+++..+-      -.+..+.|++.-|+.+|+|
T Consensus        70 gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gTPgMIGYGMAKaA  149 (236)
T KOG4022|consen   70 GEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGTPGMIGYGMAKAA  149 (236)
T ss_pred             ccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCCCcccchhHHHHH
Confidence             46999999999752211111   1223444555555555556666667766532      2456778899999999999


Q ss_pred             ccCCCCccc
Q psy4246         271 LSLPVSGSY  279 (328)
Q Consensus       271 l~~~~~g~~  279 (328)
                      +. .++...
T Consensus       150 VH-qLt~SL  157 (236)
T KOG4022|consen  150 VH-QLTSSL  157 (236)
T ss_pred             HH-HHHHHh
Confidence            98 776443

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.94  E-value=6.9e-05  Score=68.94  Aligned_cols=109  Identities=16%  Similarity=0.137  Sum_probs=75.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChh---HHHHHHHHHH-----hhCCCCeEEEEEcccCCHH------H
Q psy4246         124 YNAIVTGANTGIGFETARSLALHG-CRVILACRSLD---KANDAISKIL-----TEKPSAQCIAMELNLCRLK------S  188 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~---~~~~~~~~l~-----~~~~~~~~~~~~~Dls~~~------~  188 (328)
                      +++++|||+|-||..+..+|..+- ++|++.-|-.+   ..+.+.+.+.     .+....++..+..|++.+.      .
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            479999999999999999988764 69999877543   1222222222     1122568999999999433      3


Q ss_pred             HHHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         189 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       189 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      .+.+.       ..+|.+||||+...-..     .+.+....|+.|+..+.+.+.-
T Consensus        81 ~~~La-------~~vD~I~H~gA~Vn~v~-----pYs~L~~~NVlGT~evlrLa~~  124 (382)
T COG3320          81 WQELA-------ENVDLIIHNAALVNHVF-----PYSELRGANVLGTAEVLRLAAT  124 (382)
T ss_pred             HHHHh-------hhcceEEecchhhcccC-----cHHHhcCcchHhHHHHHHHHhc
Confidence            33333       36899999999753221     2457788999999999888854

>KOG2865|consensus

Probab=97.91  E-value=6.4e-05  Score=66.37  Aligned_cols=110  Identities=19%  Similarity=0.104  Sum_probs=80.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+++|-++-|-||+|.+|+.++.+|++.|-.||+-+|..+.-   ...++-...=+++.+...|+.|+++|+++++.   
T Consensus        57 sS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~---~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~---  130 (391)
T KOG2865|consen   57 SSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYD---PRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKH---  130 (391)
T ss_pred             ccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccc---hhheeecccccceeeeccCCCCHHHHHHHHHh---
Confidence            368999999999999999999999999999999999865431   11222221125899999999999999999874   


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                          -+++||..|---...+++.      -++|+.++-.+++.+-.
T Consensus       131 ----sNVVINLIGrd~eTknf~f------~Dvn~~~aerlAricke  166 (391)
T KOG2865|consen  131 ----SNVVINLIGRDYETKNFSF------EDVNVHIAERLARICKE  166 (391)
T ss_pred             ----CcEEEEeeccccccCCccc------ccccchHHHHHHHHHHh
Confidence                5899999996322222222      24677777666666633

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.89  E-value=8.4e-05  Score=66.39  Aligned_cols=73  Identities=25%  Similarity=0.227  Sum_probs=62.2

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .+|||||+|.+|.+++++|.++|++|.+..|+.+.+....         ..+.....|+.++.++...++       ++|
T Consensus         2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~---------~~v~~~~~d~~~~~~l~~a~~-------G~~   65 (275)
T COG0702           2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA---------GGVEVVLGDLRDPKSLVAGAK-------GVD   65 (275)
T ss_pred             eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc---------CCcEEEEeccCCHhHHHHHhc-------ccc
Confidence            5899999999999999999999999999999988765543         367888999999998777665       678


Q ss_pred             EEEEccccC
Q psy4246         205 ILVLNAGVF  213 (328)
Q Consensus       205 ~lvnnAg~~  213 (328)
                      .+++..+..
T Consensus        66 ~~~~i~~~~   74 (275)
T COG0702          66 GVLLISGLL   74 (275)
T ss_pred             EEEEEeccc
Confidence            888887764

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.88  E-value=4.2e-05  Score=70.53  Aligned_cols=76  Identities=22%  Similarity=0.317  Sum_probs=56.5

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHC-C-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALH-G-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~-G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +.++++|+++||||+|.||..+|++|+.+ | .+|++++|+.+++..+..++.           ..|+.+   +.     
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~-----------~~~i~~---l~-----  210 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG-----------GGKILS---LE-----  210 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc-----------cccHHh---HH-----
Confidence            45799999999999999999999999865 6 489999999887766655431           122221   22     


Q ss_pred             HHHhcCCccEEEEccccCC
Q psy4246         196 YQKKFRSLNILVLNAGVFG  214 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~~  214 (328)
                        +.+...|++|+.++...
T Consensus       211 --~~l~~aDiVv~~ts~~~  227 (340)
T PRK14982        211 --EALPEADIVVWVASMPK  227 (340)
T ss_pred             --HHHccCCEEEECCcCCc
Confidence              23346899999999754

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=97.87  E-value=0.00017  Score=79.25  Aligned_cols=114  Identities=11%  Similarity=0.056  Sum_probs=75.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCC----CeEEEeeCChhHHH---HHHHHHHhhC-----CCCeEEEEEcccCCHHHH-
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHG----CRVILACRSLDKAN---DAISKILTEK-----PSAQCIAMELNLCRLKSV-  189 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~G----a~Vi~~~r~~~~~~---~~~~~l~~~~-----~~~~~~~~~~Dls~~~~v-  189 (328)
                      .++|+||||+|.||.++++.|+++|    .+|++..|+.....   .....+....     ...++.++.+|++++.-- 
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence            5789999999999999999999987    78888888754322   1111111100     013788999999865210 


Q ss_pred             -HHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         190 -KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       190 -~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                       ....+++.   ..+|++||||+....  ..+   +......|+.|+..+++.+..
T Consensus      1051 ~~~~~~~l~---~~~d~iiH~Aa~~~~--~~~---~~~~~~~nv~gt~~ll~~a~~ 1098 (1389)
T TIGR03443      1051 SDEKWSDLT---NEVDVIIHNGALVHW--VYP---YSKLRDANVIGTINVLNLCAE 1098 (1389)
T ss_pred             CHHHHHHHH---hcCCEEEECCcEecC--ccC---HHHHHHhHHHHHHHHHHHHHh
Confidence             11222222   369999999997531  122   344556899999999988854

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>KOG2733|consensus

Probab=97.79  E-value=9.9e-05  Score=67.04  Aligned_cols=81  Identities=15%  Similarity=0.227  Sum_probs=69.0

Q ss_pred             EEEcCCCCCccHHHHHHHHH----CCCeEEEeeCChhHHHHHHHHHHhhCCC--CeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         126 AIVTGANTGIGFETARSLAL----HGCRVILACRSLDKANDAISKILTEKPS--AQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~----~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++|-||+|--|.-++++++.    .|..+.+++|+++++++..+++....+.  .....+.||.+|++++.+++.+    
T Consensus         8 vVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~----   83 (423)
T KOG2733|consen    8 VVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ----   83 (423)
T ss_pred             EEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhh----
Confidence            78999999999999999999    7889999999999999998888765421  2334889999999999998875    


Q ss_pred             cCCccEEEEccccC
Q psy4246         200 FRSLNILVLNAGVF  213 (328)
Q Consensus       200 ~g~id~lvnnAg~~  213 (328)
                         -.+||||+|-+
T Consensus        84 ---~~vivN~vGPy   94 (423)
T KOG2733|consen   84 ---ARVIVNCVGPY   94 (423)
T ss_pred             ---hEEEEeccccc
Confidence               47999999953

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.70  E-value=6.5e-05  Score=72.56  Aligned_cols=78  Identities=18%  Similarity=0.267  Sum_probs=52.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +++||+++|||+++ +|.++|+.|++.|++|++.+++.........++...  +.++  ...+  +...+   ..     
T Consensus         2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~--g~~~--~~~~--~~~~~---~~-----   66 (447)
T PRK02472          2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEE--GIKV--ICGS--HPLEL---LD-----   66 (447)
T ss_pred             CcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhc--CCEE--EeCC--CCHHH---hc-----
Confidence            57899999999976 999999999999999999998754433333444432  3222  2111  11111   11     


Q ss_pred             cCCccEEEEccccC
Q psy4246         200 FRSLNILVLNAGVF  213 (328)
Q Consensus       200 ~g~id~lvnnAg~~  213 (328)
                       ..+|+||+++|+.
T Consensus        67 -~~~d~vV~s~gi~   79 (447)
T PRK02472         67 -EDFDLMVKNPGIP   79 (447)
T ss_pred             -CcCCEEEECCCCC
Confidence             1489999999985

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.68  E-value=0.00019  Score=58.72  Aligned_cols=76  Identities=18%  Similarity=0.320  Sum_probs=55.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++++++++|+|+ |++|.++++.|++.| .+|++++|+.+..++..+++...       .+..+.++.+++         
T Consensus        16 ~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------   78 (155)
T cd01065          16 ELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL---------   78 (155)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc---------
Confidence            467889999998 899999999999996 78999999988777766655321       022333333322         


Q ss_pred             hcCCccEEEEccccC
Q psy4246         199 KFRSLNILVLNAGVF  213 (328)
Q Consensus       199 ~~g~id~lvnnAg~~  213 (328)
                       ....|+||++....
T Consensus        79 -~~~~Dvvi~~~~~~   92 (155)
T cd01065          79 -LAEADLIINTTPVG   92 (155)
T ss_pred             -cccCCEEEeCcCCC
Confidence             24789999998764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.59  E-value=0.00034  Score=62.98  Aligned_cols=76  Identities=18%  Similarity=0.304  Sum_probs=55.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ..++|+++|+|+ ||+|++++..|++.|++|.+++|+.++.+++.+++...  + .+.....|     .   .      .
T Consensus       114 ~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~--~-~~~~~~~~-----~---~------~  175 (270)
T TIGR00507       114 LRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRY--G-EIQAFSMD-----E---L------P  175 (270)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc--C-ceEEechh-----h---h------c
Confidence            356899999999 69999999999999999999999988887777666432  1 22222111     1   0      1


Q ss_pred             cCCccEEEEccccC
Q psy4246         200 FRSLNILVLNAGVF  213 (328)
Q Consensus       200 ~g~id~lvnnAg~~  213 (328)
                      ....|+|||+.+..
T Consensus       176 ~~~~DivInatp~g  189 (270)
T TIGR00507       176 LHRVDLIINATSAG  189 (270)
T ss_pred             ccCccEEEECCCCC
Confidence            24689999999873

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG1372|consensus

Probab=97.59  E-value=0.00022  Score=61.73  Aligned_cols=142  Identities=18%  Similarity=0.083  Sum_probs=94.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH-HHHHHh---hCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA-ISKILT---EKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~-~~~l~~---~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..|++||||-+|-=|..+|.-|+..|++|..+-|........ ++.|-.   ...+........|++|...+.+++..+ 
T Consensus        27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i-  105 (376)
T KOG1372|consen   27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI-  105 (376)
T ss_pred             cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc-
Confidence            456999999999999999999999999998776654433221 222211   112567788899999999999999987 


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH-HHhc--------cccce---------ecccc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA-LIKG--------AKLFA---------RQQGA  259 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~~--------ss~~~---------~~~~~  259 (328)
                          .++-+.|.|+-..-  .++.+--+.+-+|...|+++|..++... |.+.        |-++|         ..+.-
T Consensus       106 ----kPtEiYnLaAQSHV--kvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPFy  179 (376)
T KOG1372|consen  106 ----KPTEVYNLAAQSHV--KVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPFY  179 (376)
T ss_pred             ----Cchhhhhhhhhcce--EEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCCC
Confidence                57777777775321  1222222445667788888888777443 2221        22233         23334


Q ss_pred             cchhhhccCcc
Q psy4246         260 ATSIYCATSLD  270 (328)
Q Consensus       260 ~~~~y~ask~a  270 (328)
                      +.+.|+++|-.
T Consensus       180 PRSPYa~aKmy  190 (376)
T KOG1372|consen  180 PRSPYAAAKMY  190 (376)
T ss_pred             CCChhHHhhhh
Confidence            56789998865

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.57  E-value=0.00024  Score=64.19  Aligned_cols=49  Identities=18%  Similarity=0.258  Sum_probs=43.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKIL  168 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~  168 (328)
                      .++++|+++|+|+ ||+|++++..|+..| .+|++++|+.++++++.+++.
T Consensus       119 ~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~  168 (278)
T PRK00258        119 VDLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFG  168 (278)
T ss_pred             CCCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence            4688999999997 899999999999999 799999999988877766653

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.51  E-value=0.00011  Score=63.00  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=41.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISK  166 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~  166 (328)
                      +.+|+||+++|+|.+ .+|..+|+.|.+.|++|++.+++.+.+++..+.
T Consensus        23 ~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~   70 (200)
T cd01075          23 TDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL   70 (200)
T ss_pred             CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            457899999999995 899999999999999999999998766655443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.50  E-value=0.00022  Score=60.22  Aligned_cols=77  Identities=17%  Similarity=0.210  Sum_probs=46.5

Q ss_pred             CCCceEEEcCCC----------------CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC
Q psy4246         121 LSNYNAIVTGAN----------------TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC  184 (328)
Q Consensus       121 l~~k~~lITGas----------------~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls  184 (328)
                      |+||.||||+|.                |-.|.++|+.+..+||+|+++..... +..          ...+..+.  +.
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~~----------p~~~~~i~--v~   67 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LPP----------PPGVKVIR--VE   67 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------------TTEEEEE---S
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-ccc----------cccceEEE--ec
Confidence            578888888764                45899999999999999999887632 110          12344443  44


Q ss_pred             CHHHHHHHHHHHHHhcCCccEEEEccccC
Q psy4246         185 RLKSVKKFAEEYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       185 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~  213 (328)
                      +.++   +.+.+.+.+..-|++|++|++.
T Consensus        68 sa~e---m~~~~~~~~~~~Di~I~aAAVs   93 (185)
T PF04127_consen   68 SAEE---MLEAVKELLPSADIIIMAAAVS   93 (185)
T ss_dssp             SHHH---HHHHHHHHGGGGSEEEE-SB--
T ss_pred             chhh---hhhhhccccCcceeEEEecchh
Confidence            4444   4444445555569999999985

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.48  E-value=0.00073  Score=62.71  Aligned_cols=64  Identities=17%  Similarity=0.288  Sum_probs=52.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh---------------------hHHHHHHHHHHhhCCCCeEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL---------------------DKANDAISKILTEKPSAQCI  177 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~---------------------~~~~~~~~~l~~~~~~~~~~  177 (328)
                      .|+++.|+|.|+ ||+|.++|+.|+..|. ++.++|++.                     .+.+.+.+.+.+.++..++.
T Consensus        21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            578899999998 7899999999999997 899898863                     24555667777777778888


Q ss_pred             EEEcccC
Q psy4246         178 AMELNLC  184 (328)
Q Consensus       178 ~~~~Dls  184 (328)
                      .+..|++
T Consensus       100 ~~~~~~~  106 (338)
T PRK12475        100 PVVTDVT  106 (338)
T ss_pred             EEeccCC
Confidence            8887775

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.43  E-value=0.00072  Score=61.29  Aligned_cols=51  Identities=22%  Similarity=0.197  Sum_probs=44.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhC
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEK  171 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~  171 (328)
                      ++++|.++|.|+ ||.|++++..|+..|+ +|++++|+.++.+.+.+.+....
T Consensus       124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~  175 (284)
T PRK12549        124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF  175 (284)
T ss_pred             CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC
Confidence            578899999998 7899999999999997 79999999999888887775543

>KOG0747|consensus

Probab=97.39  E-value=9.2e-05  Score=65.35  Aligned_cols=144  Identities=13%  Similarity=0.040  Sum_probs=92.2

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHC--CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALH--GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~--Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -|.++||||.|-||...+..++..  .++.+.++.-.--..  ...+.......+..++..|+.+...+..++..     
T Consensus         6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~-----   78 (331)
T KOG0747|consen    6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--LKNLEPVRNSPNYKFVEGDIADADLVLYLFET-----   78 (331)
T ss_pred             cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--cchhhhhccCCCceEeeccccchHHHHhhhcc-----
Confidence            388999999999999999999886  345554432100000  11122222256889999999999888777653     


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccce----------ecccccchh
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFA----------RQQGAATSI  263 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~----------~~~~~~~~~  263 (328)
                      ..+|.|+|-|+...-  +.+.-+--.....|++++..|.+.+.-...-.       -+++|          .....+...
T Consensus        79 ~~id~vihfaa~t~v--d~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnp  156 (331)
T KOG0747|consen   79 EEIDTVIHFAAQTHV--DRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNP  156 (331)
T ss_pred             CchhhhhhhHhhhhh--hhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCc
Confidence            489999999986421  11112223456789999999988886553211       11222          112234678


Q ss_pred             hhccCccccCCCC
Q psy4246         264 YCATSLDLSLPVS  276 (328)
Q Consensus       264 y~ask~al~~~~~  276 (328)
                      |+|+|+|.+ .+.
T Consensus       157 yAasKaAaE-~~v  168 (331)
T KOG0747|consen  157 YAASKAAAE-MLV  168 (331)
T ss_pred             hHHHHHHHH-HHH
Confidence            999999988 444

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.38  E-value=0.0012  Score=56.81  Aligned_cols=83  Identities=17%  Similarity=0.259  Sum_probs=61.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC-------------------hhHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRS-------------------LDKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|.+++|+|.|+ ||+|.++|+.|+..|. ++.++|.+                   ..+.+.+.+.+.+.+|..++..+
T Consensus        18 kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        18 RLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            578899999996 7999999999999997 89998876                   23556666777777777777777


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ..++.+ +.+.++       +...|++|.+..
T Consensus        97 ~~~i~~-~~~~~~-------~~~~D~Vi~~~d  120 (202)
T TIGR02356        97 KERVTA-ENLELL-------INNVDLVLDCTD  120 (202)
T ss_pred             hhcCCH-HHHHHH-------HhCCCEEEECCC
Confidence            766653 233332       236899988754

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.36  E-value=0.00074  Score=62.13  Aligned_cols=108  Identities=18%  Similarity=0.099  Sum_probs=70.2

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++.+.++|||++|.||..+|..|+..|  .+++++|++  .+.....++....+  .  ....+.+|+.++.+.+     
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~~~--~--~~v~~~td~~~~~~~l-----   74 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHIDT--P--AKVTGYADGELWEKAL-----   74 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhcCc--C--ceEEEecCCCchHHHh-----
Confidence            456689999999999999999999666  479999983  22222334433221  1  2233455544322222     


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                        ...|++|++||.....    .+.+...+..|+...-.+++.+..+
T Consensus        75 --~gaDvVVitaG~~~~~----~~tR~dll~~N~~i~~~i~~~i~~~  115 (321)
T PTZ00325         75 --RGADLVLICAGVPRKP----GMTRDDLFNTNAPIVRDLVAAVASS  115 (321)
T ss_pred             --CCCCEEEECCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              3789999999985321    2346677888988777777666554

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.25  E-value=0.00074  Score=56.06  Aligned_cols=72  Identities=14%  Similarity=0.139  Sum_probs=59.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .+.|.||+|-.|..|+++..++|+.|..+.|+..++...          ..+..++.|+.|++++...+.       +.|
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~l~-------g~D   64 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASDLA-------GHD   64 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhhhc-------CCc
Confidence            477899999999999999999999999999998775432          245678999999988755543       789


Q ss_pred             EEEEccccC
Q psy4246         205 ILVLNAGVF  213 (328)
Q Consensus       205 ~lvnnAg~~  213 (328)
                      +||..-|..
T Consensus        65 aVIsA~~~~   73 (211)
T COG2910          65 AVISAFGAG   73 (211)
T ss_pred             eEEEeccCC
Confidence            999887765

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.21  E-value=0.00054  Score=67.48  Aligned_cols=48  Identities=27%  Similarity=0.393  Sum_probs=41.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKI  167 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l  167 (328)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++..++
T Consensus       375 ~~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l  422 (529)
T PLN02520        375 SPLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADAV  422 (529)
T ss_pred             cCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence            3578999999999 69999999999999999999999988777665544

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.16  E-value=0.0028  Score=58.91  Aligned_cols=64  Identities=20%  Similarity=0.280  Sum_probs=50.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh---------------------hHHHHHHHHHHhhCCCCeEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL---------------------DKANDAISKILTEKPSAQCI  177 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~---------------------~~~~~~~~~l~~~~~~~~~~  177 (328)
                      .|+.++|+|.|+ ||||..+|+.|+..|. +|.++|.+.                     .+.+.+.+.+.+..+..++.
T Consensus        21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~   99 (339)
T PRK07688         21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE   99 (339)
T ss_pred             HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence            578889999999 8999999999999998 899998762                     23444556666666666777


Q ss_pred             EEEcccC
Q psy4246         178 AMELNLC  184 (328)
Q Consensus       178 ~~~~Dls  184 (328)
                      .+..+++
T Consensus       100 ~~~~~~~  106 (339)
T PRK07688        100 AIVQDVT  106 (339)
T ss_pred             EEeccCC
Confidence            7777765

>PLN00106 malate dehydrogenase

Probab=97.16  E-value=0.0012  Score=60.71  Aligned_cols=107  Identities=12%  Similarity=0.095  Sum_probs=69.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ..+.|+|||++|.+|..+|..|+.+|.  +++++|+++  .+..+.+|....+  ..  ...++++.+++.+.       
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~--~~--~i~~~~~~~d~~~~-------   83 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT--PA--QVRGFLGDDQLGDA-------   83 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc--Cc--eEEEEeCCCCHHHH-------
Confidence            346899999999999999999997764  799999876  2222223333221  11  12233333333322       


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      +...|++|+.||.....    ...++..+..|+.....+.+.+..+
T Consensus        84 l~~aDiVVitAG~~~~~----g~~R~dll~~N~~i~~~i~~~i~~~  125 (323)
T PLN00106         84 LKGADLVIIPAGVPRKP----GMTRDDLFNINAGIVKTLCEAVAKH  125 (323)
T ss_pred             cCCCCEEEEeCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34799999999985321    2346778888988877766666544

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.14  E-value=0.0031  Score=55.29  Aligned_cols=83  Identities=22%  Similarity=0.286  Sum_probs=60.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC-------------------hhHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRS-------------------LDKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|.+++|+|.|+ ||+|.++|+.|+..|. ++.++|.+                   ..+.+.+.+.+.+.+|..++..+
T Consensus        18 ~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          18 KLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            578889999996 8999999999999997 67777542                   23456667777777777788888


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ..+++. +.+.+++       ...|++|.+..
T Consensus        97 ~~~i~~-~~~~~~~-------~~~DvVi~~~d  120 (228)
T cd00757          97 NERLDA-ENAEELI-------AGYDLVLDCTD  120 (228)
T ss_pred             cceeCH-HHHHHHH-------hCCCEEEEcCC
Confidence            777742 3333333       35899998765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06849 hypothetical protein; Provisional

Probab=97.14  E-value=0.0032  Score=59.70  Aligned_cols=83  Identities=16%  Similarity=0.128  Sum_probs=54.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +.|+|||||++.++|+.+++.|.+.|++|++++.+....... ....     .+...+...-.+.+...+.+.++.+++ 
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~-s~~~-----d~~~~~p~p~~d~~~~~~~L~~i~~~~-   75 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRF-SRAV-----DGFYTIPSPRWDPDAYIQALLSIVQRE-   75 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHH-HHhh-----hheEEeCCCCCCHHHHHHHHHHHHHHc-
Confidence            458899999999999999999999999999999876543321 1111     122222222234444444444455554 


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ++|+||....
T Consensus        76 ~id~vIP~~e   85 (389)
T PRK06849         76 NIDLLIPTCE   85 (389)
T ss_pred             CCCEEEECCh
Confidence            4899998765

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.13  E-value=0.0027  Score=59.94  Aligned_cols=83  Identities=20%  Similarity=0.297  Sum_probs=60.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC-------------------hhHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRS-------------------LDKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.+++++                   ..+.+.+.+.+.+.+|..++..+
T Consensus       132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~  210 (376)
T PRK08762        132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV  210 (376)
T ss_pred             HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            478888998876 8999999999999997 79999886                   34566667777777666677776


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ...+++ +.+..++       ...|+||++..
T Consensus       211 ~~~~~~-~~~~~~~-------~~~D~Vv~~~d  234 (376)
T PRK08762        211 QERVTS-DNVEALL-------QDVDVVVDGAD  234 (376)
T ss_pred             eccCCh-HHHHHHH-------hCCCEEEECCC
Confidence            666553 2333333       25788888765

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=97.12  E-value=0.002  Score=59.13  Aligned_cols=81  Identities=23%  Similarity=0.335  Sum_probs=58.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..++.++|+|++++||.++++.+...|++|++++++.+..+.+ ..+     +..   ..+|..+.+..+.+.+...  .
T Consensus       165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~-----~~~---~~~~~~~~~~~~~~~~~~~--~  233 (342)
T cd08266         165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA-KEL-----GAD---YVIDYRKEDFVREVRELTG--K  233 (342)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCC---eEEecCChHHHHHHHHHhC--C
Confidence            4678999999999999999999999999999999887665433 221     222   2245666555555544332  2


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++++++|.
T Consensus       234 ~~~d~~i~~~g~  245 (342)
T cd08266         234 RGVDVVVEHVGA  245 (342)
T ss_pred             CCCcEEEECCcH
Confidence            469999999983

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.0012  Score=59.76  Aligned_cols=76  Identities=22%  Similarity=0.288  Sum_probs=62.1

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      .-++|-||+|--|.-+|++|+.+|.+-++.+|+..++..+...|     +.++..+.+.+  ++.++++.+       +.
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~L-----G~~~~~~p~~~--p~~~~~~~~-------~~   72 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASL-----GPEAAVFPLGV--PAALEAMAS-------RT   72 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhc-----CccccccCCCC--HHHHHHHHh-------cc
Confidence            34889999999999999999999999999999999998888777     44555555554  666665554       68


Q ss_pred             cEEEEccccC
Q psy4246         204 NILVLNAGVF  213 (328)
Q Consensus       204 d~lvnnAg~~  213 (328)
                      ++|+||+|-+
T Consensus        73 ~VVlncvGPy   82 (382)
T COG3268          73 QVVLNCVGPY   82 (382)
T ss_pred             eEEEeccccc
Confidence            9999999953

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.07  E-value=0.0022  Score=59.34  Aligned_cols=77  Identities=18%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC-
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR-  201 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g-  201 (328)
                      |+++||+||+||+|...++.....|+.++++..+.++.+ ...++     +...   ..|..+.+    +.+++.+..+ 
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~l-----GAd~---vi~y~~~~----~~~~v~~~t~g  209 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKEL-----GADH---VINYREED----FVEQVRELTGG  209 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhc-----CCCE---EEcCCccc----HHHHHHHHcCC
Confidence            899999999999999999888889987777666665554 44333     2221   22333333    4444444332 


Q ss_pred             -CccEEEEcccc
Q psy4246         202 -SLNILVLNAGV  212 (328)
Q Consensus       202 -~id~lvnnAg~  212 (328)
                       ++|+++...|.
T Consensus       210 ~gvDvv~D~vG~  221 (326)
T COG0604         210 KGVDVVLDTVGG  221 (326)
T ss_pred             CCceEEEECCCH
Confidence             59999998884

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.05  E-value=0.0053  Score=49.06  Aligned_cols=80  Identities=21%  Similarity=0.360  Sum_probs=60.0

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC-------------------hhHHHHHHHHHHhhCCCCeEEEEEcc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGC-RVILACRS-------------------LDKANDAISKILTEKPSAQCIAMELN  182 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~D  182 (328)
                      .++++|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..|..++..+..+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            467888887 8999999999999998 78888753                   12466677778888888899999988


Q ss_pred             cCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         183 LCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       183 ls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ++ .+...++++       ..|++|.+..
T Consensus        81 ~~-~~~~~~~~~-------~~d~vi~~~d  101 (135)
T PF00899_consen   81 ID-EENIEELLK-------DYDIVIDCVD  101 (135)
T ss_dssp             CS-HHHHHHHHH-------TSSEEEEESS
T ss_pred             cc-ccccccccc-------CCCEEEEecC
Confidence            83 344444442       6799988754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.04  E-value=0.0018  Score=59.93  Aligned_cols=81  Identities=20%  Similarity=0.237  Sum_probs=53.3

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|++++|+||+|++|..+++.+...|++|+++.++.++.+.+.+.+     +... +  .|..+.+...+.+.+.. . 
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l-----Ga~~-v--i~~~~~~~~~~~i~~~~-~-  219 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL-----GFDD-A--FNYKEEPDLDAALKRYF-P-  219 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc-----CCce-e--EEcCCcccHHHHHHHhC-C-
Confidence            36899999999999999999888889999999988877655443323     2221 1  22222222222233222 1 


Q ss_pred             CCccEEEEccc
Q psy4246         201 RSLNILVLNAG  211 (328)
Q Consensus       201 g~id~lvnnAg  211 (328)
                      +++|+++.+.|
T Consensus       220 ~gvd~v~d~~g  230 (338)
T cd08295         220 NGIDIYFDNVG  230 (338)
T ss_pred             CCcEEEEECCC
Confidence            46999999877

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.03  E-value=0.0022  Score=57.79  Aligned_cols=78  Identities=21%  Similarity=0.275  Sum_probs=56.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+.+|+.++|.|| ||-+++++..|++.|+ +|+++.|+.++++++.+.+....  ..+  ...++.+.+..+       
T Consensus       122 ~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~--~~~~~~~~~~~~-------  189 (283)
T COG0169         122 VDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAV--EAAALADLEGLE-------  189 (283)
T ss_pred             cccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccc--cccccccccccc-------
Confidence            4567899999998 7999999999999995 79999999999888887775542  111  112222222111       


Q ss_pred             HhcCCccEEEEcccc
Q psy4246         198 KKFRSLNILVLNAGV  212 (328)
Q Consensus       198 ~~~g~id~lvnnAg~  212 (328)
                          ..|+|||+..+
T Consensus       190 ----~~dliINaTp~  200 (283)
T COG0169         190 ----EADLLINATPV  200 (283)
T ss_pred             ----ccCEEEECCCC
Confidence                47999999876

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.03  E-value=0.0055  Score=54.30  Aligned_cols=83  Identities=16%  Similarity=0.215  Sum_probs=60.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..|..++..+
T Consensus        29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            578899999998 9999999999999996 787776531                   2455566677777777788888


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ...++. +.+..++       ...|++|.+..
T Consensus       108 ~~~i~~-~~~~~~~-------~~~DiVi~~~D  131 (245)
T PRK05690        108 NARLDD-DELAALI-------AGHDLVLDCTD  131 (245)
T ss_pred             eccCCH-HHHHHHH-------hcCCEEEecCC
Confidence            777753 2233332       36899887754

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.03  E-value=0.0045  Score=53.61  Aligned_cols=82  Identities=20%  Similarity=0.226  Sum_probs=59.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh------------------hHHHHHHHHHHhhCCCCeEEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL------------------DKANDAISKILTEKPSAQCIAME  180 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~  180 (328)
                      .|+.++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                  .+.+.+.+.+.+..+..++..+.
T Consensus        25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~  103 (212)
T PRK08644         25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN  103 (212)
T ss_pred             HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            478889999997 8999999999999997 588888762                  24555566666666677777777


Q ss_pred             cccCCHHHHHHHHHHHHHhcCCccEEEEcc
Q psy4246         181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNA  210 (328)
Q Consensus       181 ~Dls~~~~v~~~~~~~~~~~g~id~lvnnA  210 (328)
                      ..+++. .+.+++       ...|++|.+.
T Consensus       104 ~~i~~~-~~~~~~-------~~~DvVI~a~  125 (212)
T PRK08644        104 EKIDED-NIEELF-------KDCDIVVEAF  125 (212)
T ss_pred             eecCHH-HHHHHH-------cCCCEEEECC
Confidence            776542 222222       3678888763

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.03  E-value=0.0032  Score=57.02  Aligned_cols=80  Identities=15%  Similarity=0.206  Sum_probs=55.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++++|.++|.|+ ||-|++++..|++.|+ +|.+++|+.++.+++.+.+....+...+.  ..+.   ..+....     
T Consensus       124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~--~~~~---~~~~~~~-----  192 (283)
T PRK14027        124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVDA---RGIEDVI-----  192 (283)
T ss_pred             CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE--ecCH---hHHHHHH-----
Confidence            567899999998 8999999999999997 78999999998888877764432211121  1222   1111111     


Q ss_pred             hcCCccEEEEcccc
Q psy4246         199 KFRSLNILVLNAGV  212 (328)
Q Consensus       199 ~~g~id~lvnnAg~  212 (328)
                        ...|+|||+.-+
T Consensus       193 --~~~divINaTp~  204 (283)
T PRK14027        193 --AAADGVVNATPM  204 (283)
T ss_pred             --hhcCEEEEcCCC
Confidence              257999998765

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=97.01  E-value=0.0022  Score=59.87  Aligned_cols=81  Identities=20%  Similarity=0.236  Sum_probs=53.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|.++||+||+|++|..+++.+...|++|++++++.++.+.+..++     +....   .|..+.+.+.+.+.+..  -
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l-----Ga~~v---i~~~~~~~~~~~i~~~~--~  226 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL-----GFDEA---FNYKEEPDLDAALKRYF--P  226 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc-----CCCEE---EECCCcccHHHHHHHHC--C
Confidence            36899999999999999999888888999999888877654433233     32211   22222222333333221  1


Q ss_pred             CCccEEEEccc
Q psy4246         201 RSLNILVLNAG  211 (328)
Q Consensus       201 g~id~lvnnAg  211 (328)
                      +++|+++.+.|
T Consensus       227 ~gvD~v~d~vG  237 (348)
T PLN03154        227 EGIDIYFDNVG  237 (348)
T ss_pred             CCcEEEEECCC
Confidence            36999999887

>KOG0155|consensus

Probab=97.00  E-value=0.00098  Score=62.94  Aligned_cols=75  Identities=27%  Similarity=0.485  Sum_probs=59.7

Q ss_pred             CccccceecCCCcEEEEeCcCCccccCCCCCCcccc--------------------------------------------
Q psy4246          18 PPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKK--------------------------------------------   53 (328)
Q Consensus        18 p~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~--------------------------------------------   53 (328)
                      |++|.+.-.++|+.||+|..|...+|.+|.......                                            
T Consensus        11 ps~wtef~ap~G~pyy~ns~t~~st~ekP~~l~~~~s~~~~~~~p~~sp~~~~~~~~t~~~~~~e~~~~k~~~s~~~~ee   90 (617)
T KOG0155|consen   11 PSGWTEFKAPDGIPYYWNSETLESTWEKPSFLEKNESSGVTASEPSLSPAIAEAQQKTSSNAFGENPSEKLFVSENAAEE   90 (617)
T ss_pred             CCCCccCCCCCCcceecccccccchhhCchhhhhccccCccccCCccCcchhhhhhhhhhccCCcchHHHHHhCcchhhc
Confidence            489999899999999999999999999997422100                                            


Q ss_pred             ----------------ccCC-CCCCCeeeeeCCCcEEEEeccCcccccCCCccchh
Q psy4246          54 ----------------VSGD-LPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFA   92 (328)
Q Consensus        54 ----------------~~~~-lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~   92 (328)
                                      -..+ .+..|=...+.++++||+|+.++...|+.|--...
T Consensus        91 ~~~~~~~~kk~p~rPi~~~~ipgtdWcVVwTgD~RvFFyNpktk~S~We~P~dlk~  146 (617)
T KOG0155|consen   91 RKNSRAARKKLPDRPIFKKPIPGTDWCVVWTGDNRVFFYNPKTKLSVWERPLDLKG  146 (617)
T ss_pred             CCCcccccccCCCCCCCCCCCCCCCeEEEEeCCCceEEeCCccccccccCchhhcc
Confidence                            0011 23459999999999999999999999999965543

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.00  E-value=0.0022  Score=62.41  Aligned_cols=48  Identities=25%  Similarity=0.324  Sum_probs=41.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISK  166 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~  166 (328)
                      +.++++|+++|+|+ ||+|++++..|++.|++|++.+|+.++.+++.++
T Consensus       327 ~~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~  374 (477)
T PRK09310        327 NIPLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASR  374 (477)
T ss_pred             CCCcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            35678999999996 7999999999999999999999998776665443

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=96.99  E-value=0.002  Score=58.47  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=56.3

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..|++++|+|+++++|.++++.+...|++|++++++.+..+.+ .++     +..   ..+|..+.+..+.+.+.. . .
T Consensus       143 ~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~~~~~~-~-~  211 (325)
T cd08253         143 KAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELV-RQA-----GAD---AVFNYRAEDLADRILAAT-A-G  211 (325)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCC---EEEeCCCcCHHHHHHHHc-C-C
Confidence            3689999999999999999999999999999999987665443 222     222   124445544444443322 1 1


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      ..+|++++++|.
T Consensus       212 ~~~d~vi~~~~~  223 (325)
T cd08253         212 QGVDVIIEVLAN  223 (325)
T ss_pred             CceEEEEECCch
Confidence            369999999874

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.98  E-value=0.0027  Score=57.54  Aligned_cols=79  Identities=18%  Similarity=0.143  Sum_probs=55.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++++|.++|.|+ ||.|++++..|++.|+ +|.++.|+.++.+++++++...   ..+  ..  +...+++       ..
T Consensus       122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~---~~~--~~--~~~~~~~-------~~  186 (282)
T TIGR01809       122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV---GVI--TR--LEGDSGG-------LA  186 (282)
T ss_pred             ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc---Ccc--ee--ccchhhh-------hh
Confidence            478999999987 8999999999999997 7999999998888777665321   111  11  1111111       11


Q ss_pred             hcCCccEEEEccccC
Q psy4246         199 KFRSLNILVLNAGVF  213 (328)
Q Consensus       199 ~~g~id~lvnnAg~~  213 (328)
                      .....|+|||+..+.
T Consensus       187 ~~~~~DiVInaTp~g  201 (282)
T TIGR01809       187 IEKAAEVLVSTVPAD  201 (282)
T ss_pred             cccCCCEEEECCCCC
Confidence            124689999998764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.97  E-value=0.0018  Score=59.80  Aligned_cols=93  Identities=11%  Similarity=0.120  Sum_probs=53.9

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCC-------CeEEEeeCChhH--HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         125 NAIVTGANTGIGFETARSLALHG-------CRVILACRSLDK--ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~G-------a~Vi~~~r~~~~--~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .++||||+|.||.+++..|+..|       .+|++++++...  ++....++....     .....|+....++      
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~-----~~~~~~~~~~~~~------   72 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCA-----FPLLKSVVATTDP------   72 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhcc-----ccccCCceecCCH------
Confidence            48999999999999999999855       489999986531  221111111100     0011133222222      


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhH
Q psy4246         196 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHL  233 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~  233 (328)
                       .+.+...|+||+.||..... ..+.   .+.++.|+.
T Consensus        73 -~~~l~~aDiVI~tAG~~~~~-~~~R---~~l~~~N~~  105 (325)
T cd01336          73 -EEAFKDVDVAILVGAMPRKE-GMER---KDLLKANVK  105 (325)
T ss_pred             -HHHhCCCCEEEEeCCcCCCC-CCCH---HHHHHHHHH
Confidence             22334799999999986332 2222   445666665

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=96.95  E-value=0.0032  Score=57.09  Aligned_cols=81  Identities=17%  Similarity=0.254  Sum_probs=55.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..+++++|+|++++||.++++.+...|++|++++++.+..+.+ .++     +..   ..+|..+.+..+.+.+.. . .
T Consensus       138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~~~~~~-~-~  206 (323)
T cd05276         138 KAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RAL-----GAD---VAINYRTEDFAEEVKEAT-G-G  206 (323)
T ss_pred             CCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc-----CCC---EEEeCCchhHHHHHHHHh-C-C
Confidence            3678999999999999999999999999999999887665443 222     222   123333333333333221 1 1


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++|+++|.
T Consensus       207 ~~~d~vi~~~g~  218 (323)
T cd05276         207 RGVDVILDMVGG  218 (323)
T ss_pred             CCeEEEEECCch
Confidence            469999999884

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=96.95  E-value=0.0041  Score=56.99  Aligned_cols=75  Identities=24%  Similarity=0.361  Sum_probs=51.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+.+++|+||++++|.++++.+...|++|+++.++.+..+.+ .++     +.. ..+  |..   .+   .+.+ .+.+
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----~~~-~~~--~~~---~~---~~~~-~~~~  225 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL-KEL-----GAD-YVI--DGS---KF---SEDV-KKLG  225 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHc-----CCc-EEE--ecH---HH---HHHH-Hhcc
Confidence            578999999999999999999999999999998887654433 221     221 111  221   12   2222 2234


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      .+|++++++|.
T Consensus       226 ~~d~v~~~~g~  236 (332)
T cd08259         226 GADVVIELVGS  236 (332)
T ss_pred             CCCEEEECCCh
Confidence            79999999884

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.95  E-value=0.0024  Score=58.74  Aligned_cols=80  Identities=20%  Similarity=0.236  Sum_probs=53.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.++||+||+|++|..+++.+...|++|+++.++.++.+.+ .++     +....   .|..+.+...+.+....  -+
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~-~~l-----Ga~~v---i~~~~~~~~~~~~~~~~--~~  206 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL-KKL-----GFDVA---FNYKTVKSLEETLKKAS--PD  206 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCCEE---EeccccccHHHHHHHhC--CC
Confidence            588999999999999999988888899999999887765443 222     32221   22222223333333332  13


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|+++.+.|.
T Consensus       207 gvdvv~d~~G~  217 (325)
T TIGR02825       207 GYDCYFDNVGG  217 (325)
T ss_pred             CeEEEEECCCH
Confidence            69999998873

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.93  E-value=0.0054  Score=57.75  Aligned_cols=77  Identities=9%  Similarity=0.140  Sum_probs=54.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +.++.++|.|+ |.+|+.+++.+...|++|++++|+.++++.+...+     +..   +..+..+.+.+.+.+       
T Consensus       165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~-----g~~---v~~~~~~~~~l~~~l-------  228 (370)
T TIGR00518       165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF-----GGR---IHTRYSNAYEIEDAV-------  228 (370)
T ss_pred             CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc-----Cce---eEeccCCHHHHHHHH-------
Confidence            56777899988 78999999999999999999999987765543332     222   223445554443333       


Q ss_pred             CCccEEEEccccC
Q psy4246         201 RSLNILVLNAGVF  213 (328)
Q Consensus       201 g~id~lvnnAg~~  213 (328)
                      ...|++|+++++.
T Consensus       229 ~~aDvVI~a~~~~  241 (370)
T TIGR00518       229 KRADLLIGAVLIP  241 (370)
T ss_pred             ccCCEEEEccccC
Confidence            3679999998764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG3259|consensus

Probab=96.92  E-value=0.00043  Score=54.53  Aligned_cols=33  Identities=33%  Similarity=0.727  Sum_probs=29.2

Q ss_pred             CCCCCCeeeeeC-CCcEEEEeccCcccccCCCcc
Q psy4246          57 DLPLGWEKSVSE-DGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        57 ~lp~gw~~~~~~-~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      .||.||++.++. .|+.||+|+.|...||+.|.-
T Consensus         6 ~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~   39 (163)
T KOG3259|consen    6 KLPPGWEKRMSRSSGRPYYFNTETNESQWERPSG   39 (163)
T ss_pred             cCCchhheeccccCCCcceeccccchhhccCCCc
Confidence            589999998765 579999999999999999963

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.92  E-value=0.0066  Score=56.84  Aligned_cols=82  Identities=20%  Similarity=0.204  Sum_probs=60.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+.+|..++..+
T Consensus        25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~  103 (355)
T PRK05597         25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS  103 (355)
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence            578899999998 8999999999999996 788887643                   3566677788888888888877


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEcc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNA  210 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnA  210 (328)
                      ...++.. ....++       ...|++|.+.
T Consensus       104 ~~~i~~~-~~~~~~-------~~~DvVvd~~  126 (355)
T PRK05597        104 VRRLTWS-NALDEL-------RDADVILDGS  126 (355)
T ss_pred             EeecCHH-HHHHHH-------hCCCEEEECC
Confidence            7666532 222222       2467766654

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.91  E-value=0.0036  Score=59.72  Aligned_cols=74  Identities=23%  Similarity=0.333  Sum_probs=53.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++.+|.++|.|+ ||+|+.+++.|+..|+ +|+++.|+.++.+.+..++.    ...  .+     ..+++       .+
T Consensus       178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~----~~~--~~-----~~~~l-------~~  238 (414)
T PRK13940        178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR----NAS--AH-----YLSEL-------PQ  238 (414)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc----CCe--Ee-----cHHHH-------HH
Confidence            589999999999 9999999999999996 79999999887766655441    111  11     11222       22


Q ss_pred             hcCCccEEEEcccc
Q psy4246         199 KFRSLNILVLNAGV  212 (328)
Q Consensus       199 ~~g~id~lvnnAg~  212 (328)
                      .....|+||++.+.
T Consensus       239 ~l~~aDiVI~aT~a  252 (414)
T PRK13940        239 LIKKADIIIAAVNV  252 (414)
T ss_pred             HhccCCEEEECcCC
Confidence            23468999999874

>cd08293 PTGR2 Prostaglandin reductase

Probab=96.90  E-value=0.0036  Score=58.00  Aligned_cols=79  Identities=24%  Similarity=0.279  Sum_probs=51.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      |+++||+||+|++|..+++.+...|+ +|+++++++++.+.+.+++     |....   .|..+. ++.+.+.++..  +
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l-----Ga~~v---i~~~~~-~~~~~i~~~~~--~  223 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL-----GFDAA---INYKTD-NVAERLRELCP--E  223 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc-----CCcEE---EECCCC-CHHHHHHHHCC--C
Confidence            38999999999999999888778898 7999988877655444333     32221   222222 22222333221  4


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|+++++.|.
T Consensus       224 gvd~vid~~g~  234 (345)
T cd08293         224 GVDVYFDNVGG  234 (345)
T ss_pred             CceEEEECCCc
Confidence            69999998873

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>KOG3552|consensus

Probab=96.89  E-value=0.0012  Score=66.39  Aligned_cols=132  Identities=19%  Similarity=0.289  Sum_probs=80.0

Q ss_pred             CCccccCCCCCCccccccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchhhcccCCCcccccccCCCCccchhcc
Q psy4246          38 TEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILH  117 (328)
Q Consensus        38 ~~~t~w~~p~~~~~~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  117 (328)
                      |..+.|..|+..+.+.+  +++++|++.+++.|+.||+||.++.+++++|....-    + |+......+... .+..  
T Consensus         2 ~~~a~~~p~~~~~~~~~--~v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~~i~~----~-pr~vq~~r~~~l-GFgf--   71 (1298)
T KOG3552|consen    2 TQSAGWLPACEDWSKHE--ELSYGWERAIDSKGRSYYINHLNKTTTYEAPECIRW----E-PRQVQLQRNASL-GFGF--   71 (1298)
T ss_pred             cccccCCCCcccccccc--ccchHHHHhhhcccchhHHhhcCCccCcCCCccccC----c-chhhhhhccccc-ccee--
Confidence            45688999998887765  699999999999999999999999999999864422    1 332222211111 1111  


Q ss_pred             CCCCCCce---EEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh---hHHHHHHHHHHhhCCCCeEEEEE-cccCCHHH
Q psy4246         118 GRDLSNYN---AIVTGANTGIGFETARSLALHGCRVILACRSL---DKANDAISKILTEKPSAQCIAME-LNLCRLKS  188 (328)
Q Consensus       118 ~~~l~~k~---~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~-~Dls~~~~  188 (328)
                         ..||-   ..||-|+..||+-+      -|-.|+.+.-..   ..-+.+++-+++......+.+++ |-+-.+.+
T Consensus        72 ---vagrPviVr~VT~GGps~GKL~------PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qPc~~p~pKS  140 (1298)
T KOG3552|consen   72 ---VAGRPVIVRFVTEGGPSIGKLQ------PGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQPCVLPGPKS  140 (1298)
T ss_pred             ---ecCCceEEEEecCCCCcccccc------CCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEeccccCCCchh
Confidence               23453   34899999999744      577766653211   11122333222221234666666 55555443

>KOG1431|consensus

Probab=96.87  E-value=0.0025  Score=54.71  Aligned_cols=80  Identities=16%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCC---eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGC---RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga---~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +.++|||++|-.|.||.+.+.++|.   +.++.+.                       -.+|+++.++++++++..    
T Consensus         2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s-----------------------kd~DLt~~a~t~~lF~~e----   54 (315)
T KOG1431|consen    2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS-----------------------KDADLTNLADTRALFESE----   54 (315)
T ss_pred             ceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc-----------------------ccccccchHHHHHHHhcc----
Confidence            6799999999999999999999885   3333321                       258999999999999875    


Q ss_pred             CCccEEEEccccCCC-CC--CCChhHHHHHHhhh
Q psy4246         201 RSLNILVLNAGVFGL-GF--SHTEDGFETTFQVN  231 (328)
Q Consensus       201 g~id~lvnnAg~~~~-~~--~~~~~~~~~~~~vN  231 (328)
                       ++-.+|+.|+..+. +.  ....+-|...+++|
T Consensus        55 -kPthVIhlAAmVGGlf~N~~ynldF~r~Nl~in   87 (315)
T KOG1431|consen   55 -KPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQIN   87 (315)
T ss_pred             -CCceeeehHhhhcchhhcCCCchHHHhhcceec
Confidence             67888998886533 22  33455555544443

>PRK08223 hypothetical protein; Validated

Probab=96.85  E-value=0.0062  Score=54.87  Aligned_cols=81  Identities=19%  Similarity=0.218  Sum_probs=56.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++..|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+.+|..++..+
T Consensus        24 kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~  102 (287)
T PRK08223         24 RLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF  102 (287)
T ss_pred             HHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            578899999988 7999999999999996 788887642                   2344555666666666777777


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLN  209 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnn  209 (328)
                      ...++.. .+.++++       +.|++|.+
T Consensus       103 ~~~l~~~-n~~~ll~-------~~DlVvD~  124 (287)
T PRK08223        103 PEGIGKE-NADAFLD-------GVDVYVDG  124 (287)
T ss_pred             ecccCcc-CHHHHHh-------CCCEEEEC
Confidence            7666532 2333332       56777643

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.82  E-value=0.0085  Score=51.39  Aligned_cols=81  Identities=22%  Similarity=0.332  Sum_probs=54.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC---hh---------------HHHHHHHHHHhhCCCCeEEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRS---LD---------------KANDAISKILTEKPSAQCIAME  180 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~---~~---------------~~~~~~~~l~~~~~~~~~~~~~  180 (328)
                      .|+.++++|.|+ ||+|..+|..|++.|. +|+++|.+   ..               +.+.+.+.+....|..++..+.
T Consensus        18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            478889999998 7999999999999998 69999876   21               2233344444555556666666


Q ss_pred             cccCCHHHHHHHHHHHHHhcCCccEEEEc
Q psy4246         181 LNLCRLKSVKKFAEEYQKKFRSLNILVLN  209 (328)
Q Consensus       181 ~Dls~~~~v~~~~~~~~~~~g~id~lvnn  209 (328)
                      .+++. +.+.++       +...|++|.+
T Consensus        97 ~~i~~-~~~~~~-------~~~~DlVi~a  117 (200)
T TIGR02354        97 EKITE-ENIDKF-------FKDADIVCEA  117 (200)
T ss_pred             eeCCH-hHHHHH-------hcCCCEEEEC
Confidence            66653 222222       2467877765

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.80  E-value=0.0088  Score=56.25  Aligned_cols=65  Identities=26%  Similarity=0.336  Sum_probs=50.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC-------------------hhHHHHHHHHHHhhCCCCeEEE
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRS-------------------LDKANDAISKILTEKPSAQCIA  178 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~  178 (328)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+.+.+|..++..
T Consensus        37 ~~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~  115 (370)
T PRK05600         37 ERLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA  115 (370)
T ss_pred             HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence            3578889999988 7999999999999996 88888865                   2345666677777777777777


Q ss_pred             EEcccC
Q psy4246         179 MELNLC  184 (328)
Q Consensus       179 ~~~Dls  184 (328)
                      +...++
T Consensus       116 ~~~~i~  121 (370)
T PRK05600        116 LRERLT  121 (370)
T ss_pred             eeeecC
Confidence            766664

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.79  E-value=0.0048  Score=55.99  Aligned_cols=43  Identities=26%  Similarity=0.360  Sum_probs=38.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND  162 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~  162 (328)
                      .++.||+++|.|. |+||+++|+.|...|++|++.+|+.++.+.
T Consensus       147 ~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~  189 (287)
T TIGR02853       147 FTIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR  189 (287)
T ss_pred             CCCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            4789999999999 669999999999999999999999765433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.77  E-value=0.01  Score=49.76  Aligned_cols=75  Identities=19%  Similarity=0.227  Sum_probs=52.1

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh------------------hHHHHHHHHHHhhCCCCeEEEEEcccCCH
Q psy4246         126 AIVTGANTGIGFETARSLALHGC-RVILACRSL------------------DKANDAISKILTEKPSAQCIAMELNLCRL  186 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~Dls~~  186 (328)
                      ++|.|+ ||+|..+++.|++.|. ++.++|.+.                  .+.+.+...+.+..|..++..+...++. 
T Consensus         2 VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~-   79 (174)
T cd01487           2 VGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE-   79 (174)
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh-
Confidence            677886 8999999999999998 699998764                  2344455566666666677777666654 


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEc
Q psy4246         187 KSVKKFAEEYQKKFRSLNILVLN  209 (328)
Q Consensus       187 ~~v~~~~~~~~~~~g~id~lvnn  209 (328)
                      +.+.+++       .+.|++|.+
T Consensus        80 ~~~~~~l-------~~~DlVi~~   95 (174)
T cd01487          80 NNLEGLF-------GDCDIVVEA   95 (174)
T ss_pred             hhHHHHh-------cCCCEEEEC
Confidence            2222222       367888876

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.76  E-value=0.01  Score=52.34  Aligned_cols=83  Identities=17%  Similarity=0.215  Sum_probs=55.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++++|+|.|+ ||+|..+++.|+..|. +++++|.+.                   .+.+.+.+.+.+.+|..++..+
T Consensus        21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            478889999987 7999999999999996 788877642                   2344455666666666666666


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ...++. +.+.+++       ...|++|.+..
T Consensus       100 ~~~i~~-~~~~~~~-------~~~DlVvd~~D  123 (240)
T TIGR02355       100 NAKLDD-AELAALI-------AEHDIVVDCTD  123 (240)
T ss_pred             eccCCH-HHHHHHh-------hcCCEEEEcCC
Confidence            555542 2232222       35677776554

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.76  E-value=0.0054  Score=53.65  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=57.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .++|.|+ |-+|..+|+.|.+.|++|++++++++..++....      ...+..+.+|-++++.++++-      ....|
T Consensus         2 ~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~ag------i~~aD   68 (225)
T COG0569           2 KIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAG------IDDAD   68 (225)
T ss_pred             EEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcC------CCcCC
Confidence            4667776 7899999999999999999999998876663321      125778999999988766651      13578


Q ss_pred             EEEEcccc
Q psy4246         205 ILVLNAGV  212 (328)
Q Consensus       205 ~lvnnAg~  212 (328)
                      ++|...|-
T Consensus        69 ~vva~t~~   76 (225)
T COG0569          69 AVVAATGN   76 (225)
T ss_pred             EEEEeeCC
Confidence            88877763

>PRK08328 hypothetical protein; Provisional

Probab=96.74  E-value=0.013  Score=51.55  Aligned_cols=36  Identities=31%  Similarity=0.426  Sum_probs=31.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRS  156 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~  156 (328)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus        24 ~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         24 KLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            578889999988 7999999999999996 78888754

>KOG1891|consensus

Probab=96.71  E-value=0.0016  Score=54.99  Aligned_cols=35  Identities=17%  Similarity=0.494  Sum_probs=31.9

Q ss_pred             ccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCc
Q psy4246          54 VSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR   88 (328)
Q Consensus        54 ~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~   88 (328)
                      +.-+||+||....+-.|++|||||.++++-|..|-
T Consensus        90 edlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPl  124 (271)
T KOG1891|consen   90 EDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPL  124 (271)
T ss_pred             ccCCCCCCcceeeEecCceeEeecCCCcccccChh
Confidence            34579999999999999999999999999999884

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.65  E-value=0.014  Score=53.69  Aligned_cols=73  Identities=23%  Similarity=0.306  Sum_probs=52.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|++++|+|++ |+|...++.....|++|++++|++++++.+ .++     +....   .|-+|++.++.+.+       
T Consensus       166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a-~~l-----GAd~~---i~~~~~~~~~~~~~-------  228 (339)
T COG1064         166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELA-KKL-----GADHV---INSSDSDALEAVKE-------  228 (339)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHH-HHh-----CCcEE---EEcCCchhhHHhHh-------
Confidence            49999999998 999888877777999999999999886554 333     32322   23334444444333       


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      .+|++|+.++
T Consensus       229 ~~d~ii~tv~  238 (339)
T COG1064         229 IADAIIDTVG  238 (339)
T ss_pred             hCcEEEECCC
Confidence            2899999888

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=96.64  E-value=0.0026  Score=61.34  Aligned_cols=78  Identities=17%  Similarity=0.276  Sum_probs=53.8

Q ss_pred             CCCCCceEEEcCCC----------------CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcc
Q psy4246         119 RDLSNYNAIVTGAN----------------TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELN  182 (328)
Q Consensus       119 ~~l~~k~~lITGas----------------~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D  182 (328)
                      .+|+||.+|||+|.                |-+|.++|+.++.+||+|.+++-...        +.  . ...+..+.+ 
T Consensus       252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~--------~~--~-p~~v~~i~V-  319 (475)
T PRK13982        252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD--------LA--D-PQGVKVIHV-  319 (475)
T ss_pred             cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC--------CC--C-CCCceEEEe-
Confidence            46999999999874                34799999999999999999874321        00  1 223444433 


Q ss_pred             cCCHHHHHHHHHHHHHhcCCccEEEEccccC
Q psy4246         183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       183 ls~~~~v~~~~~~~~~~~g~id~lvnnAg~~  213 (328)
                       .+   .+++.+.+.+.+. .|++|.+|++.
T Consensus       320 -~t---a~eM~~av~~~~~-~Di~I~aAAVa  345 (475)
T PRK13982        320 -ES---ARQMLAAVEAALP-ADIAIFAAAVA  345 (475)
T ss_pred             -cC---HHHHHHHHHhhCC-CCEEEEecccc
Confidence             33   3444555555444 69999999983

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.63  E-value=0.017  Score=46.61  Aligned_cols=77  Identities=18%  Similarity=0.248  Sum_probs=54.7

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEEEcccCC
Q psy4246         126 AIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAMELNLCR  185 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~Dls~  185 (328)
                      ++|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..|..++..+..++.+
T Consensus         2 VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           2 VLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            678887 8999999999999997 688887541                   2455566666676677777777777654


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ...        .+.+.+.|++|.+..
T Consensus        81 ~~~--------~~~~~~~diVi~~~d   98 (143)
T cd01483          81 DNL--------DDFLDGVDLVIDAID   98 (143)
T ss_pred             hhH--------HHHhcCCCEEEECCC
Confidence            322        222357888887665

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07877 hypothetical protein; Provisional

Probab=96.61  E-value=0.0085  Score=60.85  Aligned_cols=125  Identities=22%  Similarity=0.276  Sum_probs=84.1

Q ss_pred             eeCCCcEEEEeccCcccccCCCccchhhcccCCCcccccccCCCCccchhccCCCCCCceEEEcCCCCCccHHHHHHHHH
Q psy4246          66 VSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLAL  145 (328)
Q Consensus        66 ~~~~g~~yy~n~~~~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~k~~lITGas~GIG~a~a~~la~  145 (328)
                      .++.|+=.||-+....-..-+|+.....           +|++............|++++|+|.|+  |+|..+|..|+.
T Consensus        61 ~~~~~~w~~~pw~~~~v~~~~~~~~~~~-----------r~~Rn~~~ig~~~Q~~L~~~~V~IvG~--GlGs~~a~~Lar  127 (722)
T PRK07877         61 LAEPGRWVYYPWRRTVVHLLGPREFRAV-----------RLDRNRNKITAEEQERLGRLRIGVVGL--SVGHAIAHTLAA  127 (722)
T ss_pred             cccCCcEEEecchhheeecCCHHHhhHH-----------HhhchhhhCCHHHHHHHhcCCEEEEEe--cHHHHHHHHHHH
Confidence            4455677788888877777777655332           122111111111123588999999999  499999999999


Q ss_pred             CCC--eEEEeeCCh------------------hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         146 HGC--RVILACRSL------------------DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       146 ~Ga--~Vi~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      .|.  +++++|.+.                  .|.+.+++.+.+.+|..++..+...++ .+.+.++++       +.|+
T Consensus       128 aGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~-~~n~~~~l~-------~~Dl  199 (722)
T PRK07877        128 EGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLT-EDNVDAFLD-------GLDV  199 (722)
T ss_pred             ccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHhc-------CCCE
Confidence            993  888887631                  245566777777778889999988887 455555543       5788


Q ss_pred             EEEccc
Q psy4246         206 LVLNAG  211 (328)
Q Consensus       206 lvnnAg  211 (328)
                      ||.+.-
T Consensus       200 VvD~~D  205 (722)
T PRK07877        200 VVEECD  205 (722)
T ss_pred             EEECCC
Confidence            887654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.59  E-value=0.0096  Score=52.60  Aligned_cols=79  Identities=19%  Similarity=0.201  Sum_probs=53.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..+++++|+|+++ +|.++++.+...|++|++++++.+..+.+ .++     +..   ...|..+.+....+.   ....
T Consensus       133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~~~---~~~~  199 (271)
T cd05188         133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELA-KEL-----GAD---HVIDYKEEDLEEELR---LTGG  199 (271)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHh-----CCc---eeccCCcCCHHHHHH---HhcC
Confidence            4688999999988 99999999989999999999887654433 222     211   122433333333333   2233


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +.+|++|+++|.
T Consensus       200 ~~~d~vi~~~~~  211 (271)
T cd05188         200 GGADVVIDAVGG  211 (271)
T ss_pred             CCCCEEEECCCC
Confidence            579999999874

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG1198|consensus

Probab=96.59  E-value=0.0075  Score=56.20  Aligned_cols=80  Identities=14%  Similarity=0.185  Sum_probs=53.2

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -+|+.+||.||+||+|.+.++-....|+.++++.++.+.. ++.+++     |..   ...|..+++-++.+.+..   .
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~-~l~k~l-----GAd---~vvdy~~~~~~e~~kk~~---~  223 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKL-ELVKKL-----GAD---EVVDYKDENVVELIKKYT---G  223 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchH-HHHHHc-----CCc---EeecCCCHHHHHHHHhhc---C
Confidence            3688999999999999999988888895555555554443 233333     221   346777744333332221   5


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|+|+-|.|-
T Consensus       224 ~~~DvVlD~vg~  235 (347)
T KOG1198|consen  224 KGVDVVLDCVGG  235 (347)
T ss_pred             CCccEEEECCCC
Confidence            689999999986

>KOG1203|consensus

Probab=96.55  E-value=0.0092  Score=56.20  Aligned_cols=116  Identities=19%  Similarity=0.148  Sum_probs=69.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHH-HHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSV-KKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v-~~~~~~~~~  198 (328)
                      ..+-..|+|+||+|++|+-+++.|.++|..|.++-|+.++.+.... +...  ......+..|.....++ ..+++.+. 
T Consensus        76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~-~~~~--d~~~~~v~~~~~~~~d~~~~~~~~~~-  151 (411)
T KOG1203|consen   76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG-VFFV--DLGLQNVEADVVTAIDILKKLVEAVP-  151 (411)
T ss_pred             CCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc-cccc--ccccceeeeccccccchhhhhhhhcc-
Confidence            4567789999999999999999999999999999999887666544 1001  12233344444433332 22332221 


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                        -...+++-++|--....     +..--..|-+.|..++++++...-
T Consensus       152 --~~~~~v~~~~ggrp~~e-----d~~~p~~VD~~g~knlvdA~~~aG  192 (411)
T KOG1203|consen  152 --KGVVIVIKGAGGRPEEE-----DIVTPEKVDYEGTKNLVDACKKAG  192 (411)
T ss_pred             --ccceeEEecccCCCCcc-----cCCCcceecHHHHHHHHHHHHHhC
Confidence              13456666666532221     111222355667777777774433

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.54  E-value=0.014  Score=53.47  Aligned_cols=77  Identities=23%  Similarity=0.336  Sum_probs=52.3

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEEEcccCC
Q psy4246         126 AIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAMELNLCR  185 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~Dls~  185 (328)
                      |+|.|+ ||||-++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+..++..+..++++
T Consensus         2 VlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           2 VLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             EEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            778886 8999999999999996 688877532                   2344555666666667777777777776


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEcc
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNA  210 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnA  210 (328)
                      ......++       .+.|++|++.
T Consensus        81 ~~~~~~f~-------~~~DvVv~a~   98 (312)
T cd01489          81 PDFNVEFF-------KQFDLVFNAL   98 (312)
T ss_pred             ccchHHHH-------hcCCEEEECC
Confidence            32222222       3577777653

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.52  E-value=0.016  Score=50.83  Aligned_cols=84  Identities=21%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|+++.++|.|+ ||+|.++++.|++.|. +++++|.+.                   .+.+.+.+.+.+.+|..++..+
T Consensus         8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~   86 (231)
T cd00755           8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV   86 (231)
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            367888999988 7999999999999996 788887542                   2445556667777777777777


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ...++. +....++.      ...|++|.+..
T Consensus        87 ~~~i~~-~~~~~l~~------~~~D~VvdaiD  111 (231)
T cd00755          87 EEFLTP-DNSEDLLG------GDPDFVVDAID  111 (231)
T ss_pred             eeecCH-hHHHHHhc------CCCCEEEEcCC
Confidence            766653 23333321      35788887654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.52  E-value=0.016  Score=55.61  Aligned_cols=46  Identities=26%  Similarity=0.445  Sum_probs=39.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISK  166 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~  166 (328)
                      ++.+++++|.|+ |.+|..+++.|...| .+|++++|+.+++.+...+
T Consensus       177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~  223 (417)
T TIGR01035       177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE  223 (417)
T ss_pred             CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence            588999999997 999999999999999 6899999998776655443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=96.51  E-value=0.0096  Score=54.63  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=51.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|.++||+||++++|..+++.+...|++|+++.++.++.+.+. ++     +... +  .|..+.+..+. +.+...  
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~-~~-----Ga~~-v--i~~~~~~~~~~-v~~~~~--  209 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK-EL-----GFDA-V--FNYKTVSLEEA-LKEAAP--  209 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc-----CCCE-E--EeCCCccHHHH-HHHHCC--
Confidence            36889999999999999998888889999999988877654432 22     3221 1  23333222222 222211  


Q ss_pred             CCccEEEEccc
Q psy4246         201 RSLNILVLNAG  211 (328)
Q Consensus       201 g~id~lvnnAg  211 (328)
                      +++|+++.+.|
T Consensus       210 ~gvd~vld~~g  220 (329)
T cd08294         210 DGIDCYFDNVG  220 (329)
T ss_pred             CCcEEEEECCC
Confidence            46999998877

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=96.51  E-value=0.0018  Score=45.55  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=23.8

Q ss_pred             CCC-ceEEEcCCCCCccHHHHHHHH-HCCCeEEEeeCC
Q psy4246         121 LSN-YNAIVTGANTGIGFETARSLA-LHGCRVILACRS  156 (328)
Q Consensus       121 l~~-k~~lITGas~GIG~a~a~~la-~~Ga~Vi~~~r~  156 (328)
                      +.| |+|||+|+|+|.|++....++ ..|++.+-++..
T Consensus        36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE   73 (78)
T PF12242_consen   36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE   73 (78)
T ss_dssp             -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred             CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence            355 899999999999999555554 678888877654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.50  E-value=0.011  Score=51.29  Aligned_cols=76  Identities=16%  Similarity=0.128  Sum_probs=53.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++.|+.+|=.|+++|   -+++.||+.|++|..+|-+++..+.+...-...  +..     +|     -....++++.+.
T Consensus        57 ~l~g~~vLDvGCGgG---~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~--gv~-----i~-----y~~~~~edl~~~  121 (243)
T COG2227          57 DLPGLRVLDVGCGGG---ILSEPLARLGASVTGIDASEKPIEVAKLHALES--GVN-----ID-----YRQATVEDLASA  121 (243)
T ss_pred             CCCCCeEEEecCCcc---HhhHHHHHCCCeeEEecCChHHHHHHHHhhhhc--ccc-----cc-----chhhhHHHHHhc
Confidence            489999999999999   699999999999999999988776554333222  222     11     123345555555


Q ss_pred             cCCccEEEEcc
Q psy4246         200 FRSLNILVLNA  210 (328)
Q Consensus       200 ~g~id~lvnnA  210 (328)
                      .++.|+|+++=
T Consensus       122 ~~~FDvV~cmE  132 (243)
T COG2227         122 GGQFDVVTCME  132 (243)
T ss_pred             CCCccEEEEhh
Confidence            57899998754

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.49  E-value=0.021  Score=51.09  Aligned_cols=84  Identities=17%  Similarity=0.196  Sum_probs=56.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHG-CRVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++..|+|.|+ ||+|.++|+.|++.| .++.++|.+.                   .+.+.+.+.+.+.+|..++..+
T Consensus        27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i  105 (268)
T PRK15116         27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV  105 (268)
T ss_pred             HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence            578889999987 799999999999999 5788887541                   1233455666666666667666


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      .--+ +++.+..++.      ...|++|.+..
T Consensus       106 ~~~i-~~e~~~~ll~------~~~D~VIdaiD  130 (268)
T PRK15116        106 DDFI-TPDNVAEYMS------AGFSYVIDAID  130 (268)
T ss_pred             eccc-ChhhHHHHhc------CCCCEEEEcCC
Confidence            4323 2333333331      35777777665

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.49  E-value=0.024  Score=48.48  Aligned_cols=82  Identities=16%  Similarity=0.334  Sum_probs=55.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh---------------------hHHHHHHHHHHhhCCCCeEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL---------------------DKANDAISKILTEKPSAQCI  177 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~---------------------~~~~~~~~~l~~~~~~~~~~  177 (328)
                      .|++..|+|.|++ |+|.++++.|+..|. ++.++|.+.                     .+.+.+.+.+++..|..++.
T Consensus        16 ~L~~s~VlviG~g-glGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~   94 (198)
T cd01485          16 KLRSAKVLIIGAG-ALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLS   94 (198)
T ss_pred             HHhhCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEE
Confidence            4677889999875 599999999999997 588877531                     13344556677777777777


Q ss_pred             EEEcccCC-HHHHHHHHHHHHHhcCCccEEEEc
Q psy4246         178 AMELNLCR-LKSVKKFAEEYQKKFRSLNILVLN  209 (328)
Q Consensus       178 ~~~~Dls~-~~~v~~~~~~~~~~~g~id~lvnn  209 (328)
                      .+..++.+ .+....++       ...|++|.+
T Consensus        95 ~~~~~~~~~~~~~~~~~-------~~~dvVi~~  120 (198)
T cd01485          95 IVEEDSLSNDSNIEEYL-------QKFTLVIAT  120 (198)
T ss_pred             EEecccccchhhHHHHH-------hCCCEEEEC
Confidence            77766653 22222222       357888765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.48  E-value=0.011  Score=56.78  Aligned_cols=46  Identities=33%  Similarity=0.505  Sum_probs=39.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISK  166 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~  166 (328)
                      ++.+++++|.|+ |++|..+++.|...|+ +|++++|+.+++..+..+
T Consensus       179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~  225 (423)
T PRK00045        179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEE  225 (423)
T ss_pred             CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence            578999999987 9999999999999997 799999998776655544

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.47  E-value=0.016  Score=53.16  Aligned_cols=74  Identities=19%  Similarity=0.232  Sum_probs=52.5

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCC--CCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         125 NAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKP--SAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .+.|.|+ |++|.++|..|+..|  .+|++++++.+.++....++.....  +.......   .+.+       .    .
T Consensus         2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~-------~----l   66 (306)
T cd05291           2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYS-------D----C   66 (306)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHH-------H----h
Confidence            5778886 899999999999999  4899999999888777777654321  11222221   2221       1    1


Q ss_pred             CCccEEEEccccC
Q psy4246         201 RSLNILVLNAGVF  213 (328)
Q Consensus       201 g~id~lvnnAg~~  213 (328)
                      ...|++|+++|..
T Consensus        67 ~~aDIVIitag~~   79 (306)
T cd05291          67 KDADIVVITAGAP   79 (306)
T ss_pred             CCCCEEEEccCCC
Confidence            4789999999985

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.46  E-value=0.0083  Score=54.25  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=35.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS  156 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~  156 (328)
                      +.+++||.++|.|+++=.|+.++..|.++|++|.++.|.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~  192 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR  192 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            457899999999998779999999999999999988774

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.46  E-value=0.014  Score=52.90  Aligned_cols=49  Identities=24%  Similarity=0.288  Sum_probs=39.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh---hHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL---DKANDAISKI  167 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~---~~~~~~~~~l  167 (328)
                      +.++++|+++|.|+ ||-+++++..|+..|+ +|.+++|+.   ++++++.+.+
T Consensus       119 ~~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~  171 (288)
T PRK12749        119 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRV  171 (288)
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHh
Confidence            34678999999998 6669999999999997 799999985   4566655555

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.44  E-value=0.019  Score=55.99  Aligned_cols=85  Identities=15%  Similarity=0.173  Sum_probs=56.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-------------
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-------------  186 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-------------  186 (328)
                      ...+.+|+|+|+ |.+|+..+..+...|++|++++++.++++.+. ++     |.+..  ..|..+.             
T Consensus       162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae-sl-----GA~~v--~i~~~e~~~~~~gya~~~s~  232 (509)
T PRK09424        162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE-SM-----GAEFL--ELDFEEEGGSGDGYAKVMSE  232 (509)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCeEE--Eeccccccccccchhhhcch
Confidence            356889999998 79999999999999999999999988765433 23     44432  2232221             


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccC
Q psy4246         187 KSVKKFAEEYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       187 ~~v~~~~~~~~~~~g~id~lvnnAg~~  213 (328)
                      +..+...+.+.+..+..|++|+++|+.
T Consensus       233 ~~~~~~~~~~~~~~~gaDVVIetag~p  259 (509)
T PRK09424        233 EFIKAEMALFAEQAKEVDIIITTALIP  259 (509)
T ss_pred             hHHHHHHHHHHhccCCCCEEEECCCCC
Confidence            111222222233335799999999974

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.41  E-value=0.073  Score=42.89  Aligned_cols=102  Identities=18%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCC--CCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKP--SAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .+.|+|++|.+|.++|..|+..|.  ++++++++++.++....++.....  .........   +.+.           +
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~---~~~~-----------~   67 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSG---DYEA-----------L   67 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEES---SGGG-----------G
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccc---cccc-----------c
Confidence            478999999999999999999874  799999998877776666654321  223333332   2222           2


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  248 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~  248 (328)
                      ..-|++|..||..... ..+   -.+.+..|..    +.+.+.+.+.+
T Consensus        68 ~~aDivvitag~~~~~-g~s---R~~ll~~N~~----i~~~~~~~i~~  107 (141)
T PF00056_consen   68 KDADIVVITAGVPRKP-GMS---RLDLLEANAK----IVKEIAKKIAK  107 (141)
T ss_dssp             TTESEEEETTSTSSST-TSS---HHHHHHHHHH----HHHHHHHHHHH
T ss_pred             ccccEEEEeccccccc-ccc---HHHHHHHhHh----HHHHHHHHHHH
Confidence            4689999999985322 122   3344555654    44444444443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.40  E-value=0.016  Score=53.50  Aligned_cols=100  Identities=13%  Similarity=0.006  Sum_probs=61.6

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC-------eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHH--HHH--
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC-------RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVK--KFA--  193 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga-------~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~--~~~--  193 (328)
                      .+.|+|++|.+|..++..|+..|.       .++++|++++..              +......|+.|.....  ...  
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~--------------~a~g~~~Dl~d~~~~~~~~~~~~   66 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK--------------VLEGVVMELMDCAFPLLDGVVPT   66 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc--------------ccceeEeehhcccchhcCceecc
Confidence            378999999999999999998663       499999864320              1233455555544110  000  


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHH
Q psy4246         194 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQL  242 (328)
Q Consensus       194 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~  242 (328)
                      ....+.+...|++|+.||.....    .+.+...+..|+.-.-.+.+.+
T Consensus        67 ~~~~~~~~~aDiVVitAG~~~~~----~~tr~~ll~~N~~i~k~i~~~i  111 (324)
T TIGR01758        67 HDPAVAFTDVDVAILVGAFPRKE----GMERRDLLSKNVKIFKEQGRAL  111 (324)
T ss_pred             CChHHHhCCCCEEEEcCCCCCCC----CCcHHHHHHHHHHHHHHHHHHH
Confidence            01234456799999999985321    2235666777766444444443

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.37  E-value=0.023  Score=48.63  Aligned_cols=81  Identities=17%  Similarity=0.376  Sum_probs=56.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++++|+|.|+ +|+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+.+|..++..+
T Consensus        18 ~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~   96 (197)
T cd01492          18 RLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD   96 (197)
T ss_pred             HHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEE
Confidence            467888999986 6699999999999997 687876531                   2355566677777777777777


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEcc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNA  210 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnA  210 (328)
                      ...+++  ...++       +.+.|++|.+.
T Consensus        97 ~~~~~~--~~~~~-------~~~~dvVi~~~  118 (197)
T cd01492          97 TDDISE--KPEEF-------FSQFDVVVATE  118 (197)
T ss_pred             ecCccc--cHHHH-------HhCCCEEEECC
Confidence            766652  12222       23679888763

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=96.36  E-value=0.014  Score=52.99  Aligned_cols=79  Identities=18%  Similarity=0.262  Sum_probs=52.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|++++|+|+++++|.++++.+...|++|+++.++.+..+.+ .++     +.+.   ..+....+....+.... . ..
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~~~~~~-~-~~  207 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EAL-----GADI---AINYREEDFVEVVKAET-G-GK  207 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCcE---EEecCchhHHHHHHHHc-C-CC
Confidence            588999999999999999999999999999999887665432 222     2221   12333333333322221 1 13


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ++|++|+++|
T Consensus       208 ~~d~~i~~~~  217 (325)
T TIGR02824       208 GVDVILDIVG  217 (325)
T ss_pred             CeEEEEECCc
Confidence            5999999987

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PRK05086 malate dehydrogenase; Provisional

Probab=96.35  E-value=0.0091  Score=54.89  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=56.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHH-C--CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEE-cccCCHHHHHHHHHHHHHh
Q psy4246         124 YNAIVTGANTGIGFETARSLAL-H--GCRVILACRSLDKANDAISKILTEKPSAQCIAME-LNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~-~--Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~-~Dls~~~~v~~~~~~~~~~  199 (328)
                      +.++|.||+|+||.+++..|.. .  +..+++.++++. .......+...  . ....+. ++-.+   +       .+.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~--~-~~~~i~~~~~~d---~-------~~~   66 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHI--P-TAVKIKGFSGED---P-------TPA   66 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcC--C-CCceEEEeCCCC---H-------HHH
Confidence            3689999999999999998865 2  357888888743 21111122111  1 011111 11111   1       112


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      ....|++|.++|...... .+   -...+..|....-.+++.+.+
T Consensus        67 l~~~DiVIitaG~~~~~~-~~---R~dll~~N~~i~~~ii~~i~~  107 (312)
T PRK05086         67 LEGADVVLISAGVARKPG-MD---RSDLFNVNAGIVKNLVEKVAK  107 (312)
T ss_pred             cCCCCEEEEcCCCCCCCC-CC---HHHHHHHHHHHHHHHHHHHHH
Confidence            246999999999853322 22   234466666555544444433

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.33  E-value=0.0073  Score=50.23  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=35.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      .++.||.++|.|++.-+|..+++.|.++|++|.++.|+.+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~   79 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK   79 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence            4689999999999666799999999999999999998753

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>KOG2774|consensus

Probab=96.31  E-value=0.0014  Score=56.47  Aligned_cols=108  Identities=19%  Similarity=0.149  Sum_probs=73.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHC-CC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALH-GC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~-Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +-..+||||+-|-+|..+|+.|-.+ |. .||+.+.-.....     ....  |   -++..|+-|...+++++-.    
T Consensus        43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~-----V~~~--G---PyIy~DILD~K~L~eIVVn----  108 (366)
T KOG2774|consen   43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPAN-----VTDV--G---PYIYLDILDQKSLEEIVVN----  108 (366)
T ss_pred             CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchh-----hccc--C---CchhhhhhccccHHHhhcc----
Confidence            4457999999999999999988765 65 5777664332211     1111  1   2567899998888887643    


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI  247 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~  247 (328)
                       .+||-|||-.+....+.   +....-..+||+.|..++.+.+..+-.
T Consensus       109 -~RIdWL~HfSALLSAvG---E~NVpLA~~VNI~GvHNil~vAa~~kL  152 (366)
T KOG2774|consen  109 -KRIDWLVHFSALLSAVG---ETNVPLALQVNIRGVHNILQVAAKHKL  152 (366)
T ss_pred             -cccceeeeHHHHHHHhc---ccCCceeeeecchhhhHHHHHHHHcCe
Confidence             48999999877643222   222334578999999999988876543

>PRK04148 hypothetical protein; Provisional

Probab=96.31  E-value=0.014  Score=46.39  Aligned_cols=56  Identities=20%  Similarity=0.134  Sum_probs=44.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK  187 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~  187 (328)
                      +++.+++.|.+  -|.++|..|++.|++|+++|.++...+.+...        .+.++..|+.+++
T Consensus        16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~   71 (134)
T PRK04148         16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPN   71 (134)
T ss_pred             cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCC
Confidence            45789999987  88899999999999999999998865544321        3567888888665

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=96.31  E-value=0.016  Score=53.07  Aligned_cols=80  Identities=18%  Similarity=0.201  Sum_probs=52.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+.+++|.|+++++|.++++.+...|++|+.+.++.++.+.+...+     +.. .+  .|..+.+..+.+. +.. . +
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~-----g~~-~~--~~~~~~~~~~~v~-~~~-~-~  213 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL-----GFD-AA--INYKTPDLAEALK-EAA-P-D  213 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc-----CCc-eE--EecCChhHHHHHH-Hhc-c-C
Confidence            5789999999999999999999999999999988876644332212     221 11  2223333222222 222 1 4


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      .+|++++++|.
T Consensus       214 ~~d~vi~~~g~  224 (329)
T cd05288         214 GIDVYFDNVGG  224 (329)
T ss_pred             CceEEEEcchH
Confidence            69999998873

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.30  E-value=0.013  Score=54.35  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=51.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ..|++++|+|+ |++|...++.+...|+ +|+++++++++++.+ .++     |...   ..|..+. ++.+    +.+.
T Consensus       168 ~~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a-~~l-----Ga~~---vi~~~~~-~~~~----~~~~  232 (343)
T PRK09880        168 LQGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA-REM-----GADK---LVNPQND-DLDH----YKAE  232 (343)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH-HHc-----CCcE---EecCCcc-cHHH----Hhcc
Confidence            46899999986 8999999988888898 588889887776533 233     3222   1233332 2222    2222


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                      .+.+|++|.++|.
T Consensus       233 ~g~~D~vid~~G~  245 (343)
T PRK09880        233 KGYFDVSFEVSGH  245 (343)
T ss_pred             CCCCCEEEECCCC
Confidence            3569999999884

>cd00704 MDH Malate dehydrogenase

Probab=96.29  E-value=0.024  Score=52.30  Aligned_cols=100  Identities=15%  Similarity=0.113  Sum_probs=59.2

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC-------eEEEeeCCh--hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHH--H--H
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC-------RVILACRSL--DKANDAISKILTEKPSAQCIAMELNLCRLKSV--K--K  191 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v--~--~  191 (328)
                      .+.||||+|.+|..++..|+..|.       .++++|+++  +.+                .....|+.|....  .  .
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~----------------~g~~~Dl~d~~~~~~~~~~   65 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKAL----------------EGVVMELQDCAFPLLKGVV   65 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCcc----------------ceeeeehhhhcccccCCcE
Confidence            478999999999999999998763       499999876  322                2233444443100  0  0


Q ss_pred             HHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q psy4246         192 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  248 (328)
Q Consensus       192 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~  248 (328)
                      +.....+.+...|++|+.||..... ..+   -...+..|+.    +.+.+.+.+.+
T Consensus        66 i~~~~~~~~~~aDiVVitAG~~~~~-g~t---R~dll~~N~~----i~~~i~~~i~~  114 (323)
T cd00704          66 ITTDPEEAFKDVDVAILVGAFPRKP-GME---RADLLRKNAK----IFKEQGEALNK  114 (323)
T ss_pred             EecChHHHhCCCCEEEEeCCCCCCc-CCc---HHHHHHHhHH----HHHHHHHHHHH
Confidence            0012233446799999999985322 222   2344555554    34444444443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=96.26  E-value=0.0091  Score=53.16  Aligned_cols=73  Identities=14%  Similarity=0.251  Sum_probs=52.9

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .+||+||++- |+.+++.|.++|++|++..++....+...    .    .....+..+.-|.+++.+++.+     .++|
T Consensus         2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~----~----~g~~~v~~g~l~~~~l~~~l~~-----~~i~   67 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYP----I----HQALTVHTGALDPQELREFLKR-----HSID   67 (256)
T ss_pred             eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccccc----c----cCCceEEECCCCHHHHHHHHHh-----cCCC
Confidence            5899999987 99999999999999999888765432221    1    1122355666677777666654     3799


Q ss_pred             EEEEccc
Q psy4246         205 ILVLNAG  211 (328)
Q Consensus       205 ~lvnnAg  211 (328)
                      +||..+.
T Consensus        68 ~VIDAtH   74 (256)
T TIGR00715        68 ILVDATH   74 (256)
T ss_pred             EEEEcCC
Confidence            9998775

This enzyme was found to be a monomer by gel filtration.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.23  E-value=0.034  Score=48.84  Aligned_cols=78  Identities=21%  Similarity=0.338  Sum_probs=50.7

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEEEcccCC
Q psy4246         126 AIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAMELNLCR  185 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~Dls~  185 (328)
                      ++|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..|..++..+..++++
T Consensus         2 VlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           2 VLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            677774 8999999999999996 788877642                   2344445556666666777777777754


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEcc
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNA  210 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnA  210 (328)
                      .+...   +   .-+.++|++|++.
T Consensus        81 ~~~~~---~---~f~~~~DvVi~a~   99 (234)
T cd01484          81 EQDFN---D---TFFEQFHIIVNAL   99 (234)
T ss_pred             hhhch---H---HHHhCCCEEEECC
Confidence            32211   1   1124678877753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK14851 hypothetical protein; Provisional

Probab=96.23  E-value=0.028  Score=56.97  Aligned_cols=82  Identities=13%  Similarity=0.193  Sum_probs=59.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+.+|..++..+
T Consensus        40 kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~  118 (679)
T PRK14851         40 RLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF  118 (679)
T ss_pred             HHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence            578999999995 7999999999999996 677776431                   2445566667777778888888


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEcc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNA  210 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnA  210 (328)
                      ...++. +.+..+++       ++|+||.+.
T Consensus       119 ~~~i~~-~n~~~~l~-------~~DvVid~~  141 (679)
T PRK14851        119 PAGINA-DNMDAFLD-------GVDVVLDGL  141 (679)
T ss_pred             ecCCCh-HHHHHHHh-------CCCEEEECC
Confidence            888863 34444443       467776544

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.21  E-value=0.021  Score=56.73  Aligned_cols=62  Identities=24%  Similarity=0.295  Sum_probs=47.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh----------------------hHHHHHHHHHHhhCCCCeEE
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL----------------------DKANDAISKILTEKPSAQCI  177 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~----------------------~~~~~~~~~l~~~~~~~~~~  177 (328)
                      |++.+|||.|+ ||||-.+|+.|+..|. +++++|.+.                      .+.+.+.+.+.+.+|+.++.
T Consensus       336 L~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~  414 (664)
T TIGR01381       336 YSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQAT  414 (664)
T ss_pred             HhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEE
Confidence            57889999998 8999999999999996 788877521                      23445566777777777877


Q ss_pred             EEEccc
Q psy4246         178 AMELNL  183 (328)
Q Consensus       178 ~~~~Dl  183 (328)
                      .+...+
T Consensus       415 ~~~~~I  420 (664)
T TIGR01381       415 GHRLTV  420 (664)
T ss_pred             Eeeeee
Confidence            777664

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.21  E-value=0.026  Score=51.49  Aligned_cols=41  Identities=24%  Similarity=0.325  Sum_probs=36.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKA  160 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~  160 (328)
                      .++.+++++|.|. |++|+.+++.|...|++|.+++|+.+..
T Consensus       148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~  188 (296)
T PRK08306        148 ITIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHL  188 (296)
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            4678999999998 6799999999999999999999997653

>PRK14968 putative methyltransferase; Provisional

Probab=96.20  E-value=0.043  Score=45.98  Aligned_cols=79  Identities=14%  Similarity=0.141  Sum_probs=55.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCC-eEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA-QCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ..++.+|-.|++.|.   ++..|+++|.+|+.++++++.++.+.+.+....... .+.++.+|+.+.     +    .+ 
T Consensus        22 ~~~~~vLd~G~G~G~---~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~----~~-   88 (188)
T PRK14968         22 KKGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-----F----RG-   88 (188)
T ss_pred             cCCCEEEEEccccCH---HHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-----c----cc-
Confidence            367889999988776   666777779999999999887766655554432111 277888887542     1    11 


Q ss_pred             cCCccEEEEccccC
Q psy4246         200 FRSLNILVLNAGVF  213 (328)
Q Consensus       200 ~g~id~lvnnAg~~  213 (328)
                       ..+|+++.|..+.
T Consensus        89 -~~~d~vi~n~p~~  101 (188)
T PRK14968         89 -DKFDVILFNPPYL  101 (188)
T ss_pred             -cCceEEEECCCcC
Confidence             2699999998764

>PRK07411 hypothetical protein; Validated

Probab=96.18  E-value=0.031  Score=53.07  Aligned_cols=82  Identities=21%  Similarity=0.228  Sum_probs=58.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|+..+|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+.+|..++..+
T Consensus        35 ~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         35 RLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            578889999988 7999999999999996 788877531                   2456667777777777888888


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEcc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNA  210 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnA  210 (328)
                      ...++.. ...+++       ...|++|.+.
T Consensus       114 ~~~~~~~-~~~~~~-------~~~D~Vvd~~  136 (390)
T PRK07411        114 ETRLSSE-NALDIL-------APYDVVVDGT  136 (390)
T ss_pred             ecccCHH-hHHHHH-------hCCCEEEECC
Confidence            7777643 222222       2456666654

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.16  E-value=0.064  Score=49.36  Aligned_cols=78  Identities=14%  Similarity=0.215  Sum_probs=56.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCCC-CeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPS-AQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      -.++.+.|+|+ |++|.++|..|+..|.  .+++++++++.++..+.++....+- .++... .  .+.           
T Consensus         4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~~-----------   68 (315)
T PRK00066          4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GDY-----------   68 (315)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CCH-----------
Confidence            35678999998 9999999999999986  7999999988887777777654321 122222 1  121           


Q ss_pred             HhcCCccEEEEccccC
Q psy4246         198 KKFRSLNILVLNAGVF  213 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~  213 (328)
                      +.+..-|++|..||..
T Consensus        69 ~~~~~adivIitag~~   84 (315)
T PRK00066         69 SDCKDADLVVITAGAP   84 (315)
T ss_pred             HHhCCCCEEEEecCCC
Confidence            1124789999999985

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.16  E-value=0.022  Score=52.38  Aligned_cols=74  Identities=20%  Similarity=0.392  Sum_probs=53.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++.+++++|.|+ |.||..+++.|...| .+|++++|+.++..++..++     +..  .+     +.+++.+.+     
T Consensus       175 ~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-----g~~--~~-----~~~~~~~~l-----  236 (311)
T cd05213         175 NLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-----GGN--AV-----PLDELLELL-----  236 (311)
T ss_pred             CccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-----CCe--EE-----eHHHHHHHH-----
Confidence            378999999988 999999999999977 47889999988776665554     221  11     222333322     


Q ss_pred             hcCCccEEEEccccC
Q psy4246         199 KFRSLNILVLNAGVF  213 (328)
Q Consensus       199 ~~g~id~lvnnAg~~  213 (328)
                        ...|++|.+.+..
T Consensus       237 --~~aDvVi~at~~~  249 (311)
T cd05213         237 --NEADVVISATGAP  249 (311)
T ss_pred             --hcCCEEEECCCCC
Confidence              2479999998864

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.14  E-value=0.036  Score=52.67  Aligned_cols=65  Identities=28%  Similarity=0.285  Sum_probs=49.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++.+|+|.|+ ||+|..+|+.|+..|. ++.++|.+.                   .+.+.+.+.+.+.+|..++..+
T Consensus        39 ~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~  117 (392)
T PRK07878         39 RLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH  117 (392)
T ss_pred             HHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence            478889999988 7999999999999996 788877531                   2455566677777777777777


Q ss_pred             EcccCC
Q psy4246         180 ELNLCR  185 (328)
Q Consensus       180 ~~Dls~  185 (328)
                      ...++.
T Consensus       118 ~~~i~~  123 (392)
T PRK07878        118 EFRLDP  123 (392)
T ss_pred             eccCCh
Confidence            666653

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.09  E-value=0.019  Score=52.22  Aligned_cols=80  Identities=14%  Similarity=0.184  Sum_probs=52.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+++++|+|+++++|.++++.+...|++|++++++.++.+.+ .++     +.. ..+  |.......+.+.+ ... ..
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~~~--~~~~~~~~~~~~~-~~~-~~  212 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL-LAL-----GAA-HVI--VTDEEDLVAEVLR-ITG-GK  212 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc-----CCC-EEE--ecCCccHHHHHHH-HhC-CC
Confidence            578999999999999999999999999999999887665443 221     221 122  2222222222222 211 12


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      .+|++++++|.
T Consensus       213 ~~d~vi~~~~~  223 (328)
T cd08268         213 GVDVVFDPVGG  223 (328)
T ss_pred             CceEEEECCch
Confidence            59999998874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=96.04  E-value=0.044  Score=49.69  Aligned_cols=75  Identities=24%  Similarity=0.340  Sum_probs=52.8

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEEEcccCC
Q psy4246         126 AIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAMELNLCR  185 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~Dls~  185 (328)
                      |+|.|+ ||+|-++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..|..++..+..++.+
T Consensus         2 VlVVGa-GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           2 ILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            677775 8999999999999996 677776431                   2455556666677777788888888875


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEcc
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNA  210 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnA  210 (328)
                      ..  ..+       +...|++|.+.
T Consensus        81 ~~--~~f-------~~~fdvVi~al   96 (291)
T cd01488          81 KD--EEF-------YRQFNIIICGL   96 (291)
T ss_pred             hh--HHH-------hcCCCEEEECC
Confidence            32  122       24688888743

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN00203 glutamyl-tRNA reductase

Probab=96.03  E-value=0.02  Score=56.13  Aligned_cols=47  Identities=19%  Similarity=0.367  Sum_probs=41.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKI  167 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l  167 (328)
                      ++.++.++|.|+ |++|..+++.|...|+ +|+++.|+.++.+.+..++
T Consensus       263 ~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~  310 (519)
T PLN00203        263 SHASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF  310 (519)
T ss_pred             CCCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence            488999999999 9999999999999997 7999999988877665543

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.92  E-value=0.038  Score=52.33  Aligned_cols=47  Identities=30%  Similarity=0.483  Sum_probs=42.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKI  167 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l  167 (328)
                      +|++|++||.|| |-+|.-+|+.|+++| .+|+++.|+.+++++++.++
T Consensus       175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~  222 (414)
T COG0373         175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL  222 (414)
T ss_pred             ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh
Confidence            489999999998 679999999999999 58999999999988887776

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.91  E-value=0.035  Score=50.28  Aligned_cols=57  Identities=23%  Similarity=0.327  Sum_probs=39.1

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh---------------------hHHHHHHHHHHhhCCCCeEEEEEccc
Q psy4246         126 AIVTGANTGIGFETARSLALHGC-RVILACRSL---------------------DKANDAISKILTEKPSAQCIAMELNL  183 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~---------------------~~~~~~~~~l~~~~~~~~~~~~~~Dl  183 (328)
                      |+|.|+ ||+|..+|+.|+..|. +++++|.+.                     .+.+.+.+.|.+.+|..++..+...+
T Consensus         2 VLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           2 CLLLGA-GTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            677777 7999999999999996 677776431                     13344555566666666666665443

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK14852 hypothetical protein; Provisional

Probab=95.88  E-value=0.045  Score=57.02  Aligned_cols=81  Identities=19%  Similarity=0.219  Sum_probs=58.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC-------------------hhHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRS-------------------LDKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++.+|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+.+.+|..++..+
T Consensus       329 kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~  407 (989)
T PRK14852        329 RLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF  407 (989)
T ss_pred             HHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence            478899999995 7999999999999996 67777643                   12455666677777778888888


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLN  209 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnn  209 (328)
                      ...++. +.+.++++       .+|+||.+
T Consensus       408 ~~~I~~-en~~~fl~-------~~DiVVDa  429 (989)
T PRK14852        408 PEGVAA-ETIDAFLK-------DVDLLVDG  429 (989)
T ss_pred             ecCCCH-HHHHHHhh-------CCCEEEEC
Confidence            777743 34444433       46776653

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.87  E-value=0.027  Score=54.46  Aligned_cols=72  Identities=13%  Similarity=0.148  Sum_probs=49.7

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .++|.|+ |.+|.++++.|.++|..|++++++.+..+.+...       ..+.++.+|.++...++++      ...+.|
T Consensus         2 ~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~------~~~~a~   67 (453)
T PRK09496          2 KIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREA------GAEDAD   67 (453)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHc------CCCcCC
Confidence            4788887 9999999999999999999999998776554321       1355666777765544433      012455


Q ss_pred             EEEEcc
Q psy4246         205 ILVLNA  210 (328)
Q Consensus       205 ~lvnnA  210 (328)
                      .+|...
T Consensus        68 ~vi~~~   73 (453)
T PRK09496         68 LLIAVT   73 (453)
T ss_pred             EEEEec
Confidence            555544

>KOG2013|consensus

Probab=95.86  E-value=0.041  Score=52.23  Aligned_cols=83  Identities=20%  Similarity=0.277  Sum_probs=59.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +++-.+||.|| ||||-++.+.|+..|. +|.+++.+.-.+..+         +.++.|-+=|+....+.  +..++..+
T Consensus        10 i~~~riLvVGa-GGIGCELLKnLal~gf~~IhiIDlDTIDlSNL---------NRQFLFrkkhVgqsKA~--vA~~~v~~   77 (603)
T KOG2013|consen   10 IKSGRILVVGA-GGIGCELLKNLALTGFEEIHIIDLDTIDLSNL---------NRQFLFRKKHVGQSKAT--VAAKAVKQ   77 (603)
T ss_pred             hccCeEEEEec-CcccHHHHHHHHHhcCCeeEEEeccceeccch---------hhhheeehhhcCchHHH--HHHHHHHH
Confidence            35667889988 8999999999999997 688888754333222         44667777788766542  33445555


Q ss_pred             c-CCccEEEEccccCCC
Q psy4246         200 F-RSLNILVLNAGVFGL  215 (328)
Q Consensus       200 ~-g~id~lvnnAg~~~~  215 (328)
                      | .+++++-..|-+..+
T Consensus        78 Fnpn~~l~~yhanI~e~   94 (603)
T KOG2013|consen   78 FNPNIKLVPYHANIKEP   94 (603)
T ss_pred             hCCCCceEeccccccCc
Confidence            5 489999988888643

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=95.84  E-value=0.038  Score=51.93  Aligned_cols=79  Identities=19%  Similarity=0.153  Sum_probs=51.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC-HHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR-LKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~~  199 (328)
                      .|.++||+|+ ++||..+++.+...|+ +|++++++.++++.+ .++     +...   ..|..+ .+.+.+.+.++.. 
T Consensus       185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~-----Ga~~---~i~~~~~~~~~~~~v~~~~~-  253 (368)
T TIGR02818       185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKL-----GATD---CVNPNDYDKPIQEVIVEITD-  253 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh-----CCCe---EEcccccchhHHHHHHHHhC-
Confidence            5889999985 8999999888888898 799999887765544 333     3221   223332 1223333333322 


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                       +.+|++|.++|.
T Consensus       254 -~g~d~vid~~G~  265 (368)
T TIGR02818       254 -GGVDYSFECIGN  265 (368)
T ss_pred             -CCCCEEEECCCC
Confidence             379999999884

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.81  E-value=0.091  Score=45.63  Aligned_cols=42  Identities=33%  Similarity=0.443  Sum_probs=36.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHH
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISK  166 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~  166 (328)
                      ++.|.||+|.+|.++++.|++.|++|++.+|+.++.+.....
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~   43 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAK   43 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHH
Confidence            478999999999999999999999999999998877665543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.80  E-value=0.031  Score=58.92  Aligned_cols=77  Identities=21%  Similarity=0.280  Sum_probs=59.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCC-Ce-------------EEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHG-CR-------------VILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK  187 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~G-a~-------------Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~  187 (328)
                      ..|.|+|.|+ |.||..+|+.|++.. +.             |++++++.+.++++.+.+    +  ++.++.+|++|.+
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~--~~~~v~lDv~D~e  640 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----E--NAEAVQLDVSDSE  640 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----C--CCceEEeecCCHH
Confidence            4778999997 899999999999863 33             888898887766554432    2  4567899999998


Q ss_pred             HHHHHHHHHHHhcCCccEEEEcccc
Q psy4246         188 SVKKFAEEYQKKFRSLNILVLNAGV  212 (328)
Q Consensus       188 ~v~~~~~~~~~~~g~id~lvnnAg~  212 (328)
                      ++.++++       .+|+||++...
T Consensus       641 ~L~~~v~-------~~DaVIsalP~  658 (1042)
T PLN02819        641 SLLKYVS-------QVDVVISLLPA  658 (1042)
T ss_pred             HHHHhhc-------CCCEEEECCCc
Confidence            8777655       48999999874

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.75  E-value=0.098  Score=51.09  Aligned_cols=84  Identities=14%  Similarity=0.148  Sum_probs=58.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC-------------CH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC-------------RL  186 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-------------~~  186 (328)
                      ...+.+++|.|+ |.+|...+..+...|++|++++++.++++.+. ++     +.  .++..|..             +.
T Consensus       161 ~vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~-~l-----Ga--~~v~v~~~e~g~~~~gYa~~~s~  231 (511)
T TIGR00561       161 KVPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SM-----GA--EFLELDFKEEGGSGDGYAKVMSE  231 (511)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CC--eEEeccccccccccccceeecCH
Confidence            345678999997 89999999999999999999999887654332 22     22  23344432             13


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEcccc
Q psy4246         187 KSVKKFAEEYQKKFRSLNILVLNAGV  212 (328)
Q Consensus       187 ~~v~~~~~~~~~~~g~id~lvnnAg~  212 (328)
                      +..++..+.+.+.....|++|+++-+
T Consensus       232 ~~~~~~~~~~~e~~~~~DIVI~Tali  257 (511)
T TIGR00561       232 EFIAAEMELFAAQAKEVDIIITTALI  257 (511)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECccc
Confidence            44444444455556789999999944

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=95.73  E-value=0.038  Score=50.53  Aligned_cols=42  Identities=29%  Similarity=0.321  Sum_probs=36.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      .+++++|.|+++++|.++++.....|++|+++.++.++.+.+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~  187 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL  187 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence            367999999999999999999989999999999887765443

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.72  E-value=0.024  Score=45.59  Aligned_cols=43  Identities=19%  Similarity=0.135  Sum_probs=37.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKA  160 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~  160 (328)
                      +.+++||.++|.|.+.-+|+.++..|.++|+.|.+++++...+
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l   65 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQL   65 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCH
Confidence            4579999999999999999999999999999999998654333

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.71  E-value=0.054  Score=52.87  Aligned_cols=78  Identities=17%  Similarity=0.103  Sum_probs=51.8

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh-HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD-KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      +.++++|.++|.|+ |++|.++|+.|+++|++|.+++++.. ......+.+.+.  +  +.++..+-..           
T Consensus        11 ~~~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~--g--v~~~~~~~~~-----------   74 (480)
T PRK01438         11 HSDWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL--G--ATVRLGPGPT-----------   74 (480)
T ss_pred             ccCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc--C--CEEEECCCcc-----------
Confidence            34578899999997 77999999999999999999986543 333333444433  3  2222222111           


Q ss_pred             HHhcCCccEEEEccccC
Q psy4246         197 QKKFRSLNILVLNAGVF  213 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~  213 (328)
                        .....|.+|...|+.
T Consensus        75 --~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         75 --LPEDTDLVVTSPGWR   89 (480)
T ss_pred             --ccCCCCEEEECCCcC
Confidence              013589999999984

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=95.67  E-value=0.038  Score=51.03  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=51.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ..|++++|+|+ |++|..+++.+...|++ |++++++.++.+.+ .++     +..   ..+|..+.+ .+++.+ +.. 
T Consensus       162 ~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~-----ga~---~~i~~~~~~-~~~~~~-~~~-  228 (339)
T cd08239         162 SGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA-KAL-----GAD---FVINSGQDD-VQEIRE-LTS-  228 (339)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-----CCC---EEEcCCcch-HHHHHH-HhC-
Confidence            35889999986 89999999988889998 99998887765443 333     322   123433333 333222 111 


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                      ...+|++|.+.|.
T Consensus       229 ~~~~d~vid~~g~  241 (339)
T cd08239         229 GAGADVAIECSGN  241 (339)
T ss_pred             CCCCCEEEECCCC
Confidence            1269999998874

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]

Probab=95.61  E-value=0.13  Score=46.03  Aligned_cols=88  Identities=19%  Similarity=0.257  Sum_probs=57.8

Q ss_pred             CceEEEcCCCCCccHHHHHHHHH-CCCeEEEee--CChh-----H----HHHHHHHHHhhCCCCeEEEEEcccCCHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLAL-HGCRVILAC--RSLD-----K----ANDAISKILTEKPSAQCIAMELNLCRLKSVK  190 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~-~Ga~Vi~~~--r~~~-----~----~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  190 (328)
                      -|.|||.|+|+|-|++.-...+- .||+-+.+.  |...     .    -.....+.... .|--..-+..|.-+.+.-+
T Consensus        41 PKkVLviGaSsGyGLa~RIsaaFG~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~-kGlyAksingDaFS~e~k~  119 (398)
T COG3007          41 PKKVLVIGASSGYGLAARISAAFGPGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQ-KGLYAKSINGDAFSDEMKQ  119 (398)
T ss_pred             CceEEEEecCCcccHHHHHHHHhCCCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHh-cCceeeecccchhhHHHHH
Confidence            47899999999999876444432 466655443  2110     0    11122222222 1444566778888888888


Q ss_pred             HHHHHHHHhcCCccEEEEccc
Q psy4246         191 KFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       191 ~~~~~~~~~~g~id~lvnnAg  211 (328)
                      .+++.|++.+|.+|.+|+.-+
T Consensus       120 kvIe~Ik~~~g~vDlvvYSlA  140 (398)
T COG3007         120 KVIEAIKQDFGKVDLVVYSLA  140 (398)
T ss_pred             HHHHHHHHhhccccEEEEecc
Confidence            999999999999999998754

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=95.61  E-value=0.04  Score=50.29  Aligned_cols=80  Identities=16%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+..++|+|+++++|.++++.+...|++|+.++++.+..+.+ .++     +...   ..|..+.+..+.+.+..  ...
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~~~~~~--~~~  210 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RAL-----GADV---AVDYTRPDWPDQVREAL--GGG  210 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc-----CCCE---EEecCCccHHHHHHHHc--CCC
Confidence            478999999999999999999999999999999887765443 222     2221   12333333333322211  112


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      .+|+++++.|.
T Consensus       211 ~~d~vl~~~g~  221 (324)
T cd08244         211 GVTVVLDGVGG  221 (324)
T ss_pred             CceEEEECCCh
Confidence            59999998773

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=95.60  E-value=0.05  Score=49.85  Aligned_cols=79  Identities=22%  Similarity=0.295  Sum_probs=51.6

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..|..++|.|+++++|.++++.....|++|+++.++.++.+.+ .++     +... .+  |..+. .....+.....  
T Consensus       138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~~-v~--~~~~~-~~~~~~~~~~~--  205 (329)
T cd08250         138 KSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL-KSL-----GCDR-PI--NYKTE-DLGEVLKKEYP--  205 (329)
T ss_pred             CCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH-HHc-----CCce-EE--eCCCc-cHHHHHHHhcC--
Confidence            4688999999999999999998888999999998887665433 222     2221 12  22222 22222322221  


Q ss_pred             CCccEEEEccc
Q psy4246         201 RSLNILVLNAG  211 (328)
Q Consensus       201 g~id~lvnnAg  211 (328)
                      +.+|+++++.|
T Consensus       206 ~~vd~v~~~~g  216 (329)
T cd08250         206 KGVDVVYESVG  216 (329)
T ss_pred             CCCeEEEECCc
Confidence            46999999876

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PLN02740 Alcohol dehydrogenase-like

Probab=95.59  E-value=0.055  Score=51.12  Aligned_cols=80  Identities=15%  Similarity=0.147  Sum_probs=52.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-HHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-KSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~~~~~~~  198 (328)
                      -.|+++||.|+ |+||..+++.+...|+ +|++++++.++++.+ .++     +... +  .|..+. +.+.+.+.++..
T Consensus       197 ~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a-~~~-----Ga~~-~--i~~~~~~~~~~~~v~~~~~  266 (381)
T PLN02740        197 QAGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKG-KEM-----GITD-F--INPKDSDKPVHERIREMTG  266 (381)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH-HHc-----CCcE-E--EecccccchHHHHHHHHhC
Confidence            35889999986 8999999998888999 699999887765544 222     3222 2  233332 123333333322


Q ss_pred             hcCCccEEEEcccc
Q psy4246         199 KFRSLNILVLNAGV  212 (328)
Q Consensus       199 ~~g~id~lvnnAg~  212 (328)
                        +.+|++|.++|.
T Consensus       267 --~g~dvvid~~G~  278 (381)
T PLN02740        267 --GGVDYSFECAGN  278 (381)
T ss_pred             --CCCCEEEECCCC
Confidence              269999999984

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=95.55  E-value=0.074  Score=49.51  Aligned_cols=41  Identities=22%  Similarity=0.179  Sum_probs=35.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      .|++++|.|+ |+||..+++.+...|++|+++++++++++.+
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~  206 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM  206 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            5889999999 9999999998888999999999988776543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=95.54  E-value=0.05  Score=51.08  Aligned_cols=79  Identities=19%  Similarity=0.153  Sum_probs=53.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-HHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-KSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~~~~~~~~  199 (328)
                      .|.++||.|+ ++||..+++.+...|+ +|++++++.++++.+ .++     +...   ..|..+. +.+.+.+.++.. 
T Consensus       186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l-----Ga~~---~i~~~~~~~~~~~~v~~~~~-  254 (368)
T cd08300         186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF-----GATD---CVNPKDHDKPIQQVLVEMTD-  254 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc-----CCCE---EEcccccchHHHHHHHHHhC-
Confidence            5889999985 8999999998888999 699999988776543 333     3221   1233332 234444443322 


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                       +++|++|.+.|.
T Consensus       255 -~g~d~vid~~g~  266 (368)
T cd08300         255 -GGVDYTFECIGN  266 (368)
T ss_pred             -CCCcEEEECCCC
Confidence             479999998874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=95.49  E-value=0.077  Score=48.11  Aligned_cols=42  Identities=17%  Similarity=0.276  Sum_probs=36.3

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND  162 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~  162 (328)
                      -.|.+++|.|+++++|.++++.....|++|+.+.++.++.+.
T Consensus       141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~  182 (320)
T cd08243         141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAAL  182 (320)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            358899999999999999999999999999999888765443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.49  E-value=0.098  Score=48.49  Aligned_cols=90  Identities=16%  Similarity=0.190  Sum_probs=55.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHH---HHHHhhCCCCeEEEEEcccCCHHHHHHHH-
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAI---SKILTEKPSAQCIAMELNLCRLKSVKKFA-  193 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~---~~l~~~~~~~~~~~~~~Dls~~~~v~~~~-  193 (328)
                      +..|.|+++.|.|. |.||.++|+.|...|++|++.+++........   ..+........+..+.+-++.  +...++ 
T Consensus       141 ~~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~--~t~~li~  217 (330)
T PRK12480        141 SKPVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK--ESYHLFD  217 (330)
T ss_pred             ccccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH--HHHHHHh
Confidence            35789999999987 67999999999999999999998865432211   112222224466666665553  233333 


Q ss_pred             HHHHHhcCCccEEEEccc
Q psy4246         194 EEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       194 ~~~~~~~g~id~lvnnAg  211 (328)
                      +++.... +-+.++-|+|
T Consensus       218 ~~~l~~m-k~gavlIN~a  234 (330)
T PRK12480        218 KAMFDHV-KKGAILVNAA  234 (330)
T ss_pred             HHHHhcC-CCCcEEEEcC
Confidence            3333333 3455555555

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.49  E-value=0.055  Score=52.27  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=50.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++.+|+++|+|++ |+|.++|+.|+++|++|++.+......  ...++....  ..+.++..... ..    ..      
T Consensus         2 ~~~~~~~~v~G~g-~~G~~~a~~l~~~g~~v~~~d~~~~~~--~~~~l~~~~--~gi~~~~g~~~-~~----~~------   65 (445)
T PRK04308          2 TFQNKKILVAGLG-GTGISMIAYLRKNGAEVAAYDAELKPE--RVAQIGKMF--DGLVFYTGRLK-DA----LD------   65 (445)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCCCch--hHHHHhhcc--CCcEEEeCCCC-HH----HH------
Confidence            4678999999985 999999999999999999998765431  122332211  12333322211 11    11      


Q ss_pred             cCCccEEEEccccC
Q psy4246         200 FRSLNILVLNAGVF  213 (328)
Q Consensus       200 ~g~id~lvnnAg~~  213 (328)
                       ...|.||...|+.
T Consensus        66 -~~~d~vv~spgi~   78 (445)
T PRK04308         66 -NGFDILALSPGIS   78 (445)
T ss_pred             -hCCCEEEECCCCC
Confidence             3579999999985

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.49  E-value=0.061  Score=50.40  Aligned_cols=75  Identities=17%  Similarity=0.278  Sum_probs=48.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|++++|.|+ |+||..+++.+...|++|++++.+.++..+...++     +....   .|..+.+.+.+       ..+
T Consensus       183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~-----Ga~~v---i~~~~~~~~~~-------~~~  246 (360)
T PLN02586        183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL-----GADSF---LVSTDPEKMKA-------AIG  246 (360)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC-----CCcEE---EcCCCHHHHHh-------hcC
Confidence            6889999765 89999999888889999988877765543333332     32211   23333222222       224


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      .+|++|.+.|.
T Consensus       247 ~~D~vid~~g~  257 (360)
T PLN02586        247 TMDYIIDTVSA  257 (360)
T ss_pred             CCCEEEECCCC
Confidence            68999998873

>KOG4039|consensus

Probab=95.48  E-value=0.03  Score=46.38  Aligned_cols=79  Identities=15%  Similarity=0.129  Sum_probs=57.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      +.|+++.++|.||+|-.|..+.+.+++.+  .+|+++.|.+....+.         +..+.-...|.+..++.   +   
T Consensus        14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at---------~k~v~q~~vDf~Kl~~~---a---   78 (238)
T KOG4039|consen   14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT---------DKVVAQVEVDFSKLSQL---A---   78 (238)
T ss_pred             HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc---------cceeeeEEechHHHHHH---H---
Confidence            45788999999999999999999999998  3899999874221111         34555667776654433   2   


Q ss_pred             HHhcCCccEEEEccccC
Q psy4246         197 QKKFRSLNILVLNAGVF  213 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~  213 (328)
                       ..+..+|+++++-|..
T Consensus        79 -~~~qg~dV~FcaLgTT   94 (238)
T KOG4039|consen   79 -TNEQGPDVLFCALGTT   94 (238)
T ss_pred             -hhhcCCceEEEeeccc
Confidence             2335899999999875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.48  E-value=0.039  Score=42.50  Aligned_cols=71  Identities=15%  Similarity=0.212  Sum_probs=50.7

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccE
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNI  205 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~  205 (328)
                      ++|.|. +.+|+.+++.|.+.+.+|++++++++..+.+.    ..  +  +.++.+|.++++.++++-      ..+.+.
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~----~~--~--~~~i~gd~~~~~~l~~a~------i~~a~~   65 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELR----EE--G--VEVIYGDATDPEVLERAG------IEKADA   65 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH----HT--T--SEEEES-TTSHHHHHHTT------GGCESE
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH----hc--c--cccccccchhhhHHhhcC------ccccCE
Confidence            467777 57999999999997779999999987755443    22  2  668899999988766642      135677


Q ss_pred             EEEccc
Q psy4246         206 LVLNAG  211 (328)
Q Consensus       206 lvnnAg  211 (328)
                      +|....
T Consensus        66 vv~~~~   71 (116)
T PF02254_consen   66 VVILTD   71 (116)
T ss_dssp             EEEESS
T ss_pred             EEEccC
Confidence            766544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.47  E-value=0.049  Score=39.78  Aligned_cols=36  Identities=33%  Similarity=0.448  Sum_probs=31.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeC
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALH-GCRVILACR  155 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r  155 (328)
                      .++++|+++|.|+ |++|..++..|.+. +.+|.+.+|
T Consensus        19 ~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          19 KSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4688999999999 99999999999998 567777776

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.44  E-value=0.068  Score=48.34  Aligned_cols=62  Identities=23%  Similarity=0.357  Sum_probs=46.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|.+..|||.|+ +|+|.++|+.|+..|. +|.++|.+.                   .+.+.+.+.|.+.+|..++..+
T Consensus        16 kL~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~   94 (286)
T cd01491          16 KLQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVS   94 (286)
T ss_pred             HHhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEE
Confidence            477888999988 7999999999999997 688877532                   2345556667777666676666


Q ss_pred             Ecc
Q psy4246         180 ELN  182 (328)
Q Consensus       180 ~~D  182 (328)
                      ..+
T Consensus        95 ~~~   97 (286)
T cd01491          95 TGP   97 (286)
T ss_pred             ecc
Confidence            554

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.44  E-value=0.059  Score=51.31  Aligned_cols=44  Identities=27%  Similarity=0.213  Sum_probs=37.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND  162 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~  162 (328)
                      +..+.|++++|.|+ |.||+.+++.+...|++|+++++++.++..
T Consensus       197 ~~~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~  240 (413)
T cd00401         197 DVMIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQ  240 (413)
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHH
Confidence            34579999999999 589999999999999999999998776544

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.43  E-value=0.042  Score=45.18  Aligned_cols=36  Identities=22%  Similarity=0.304  Sum_probs=32.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR  155 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r  155 (328)
                      .+|+||.++|.|| |-+|...++.|.+.|++|.+++.
T Consensus         9 l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719          9 FNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcC
Confidence            4789999999998 78999999999999999998854

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.42  E-value=0.056  Score=47.27  Aligned_cols=38  Identities=21%  Similarity=0.456  Sum_probs=34.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC---eEEEeeCC
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC---RVILACRS  156 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga---~Vi~~~r~  156 (328)
                      +.++++++++|.|+ ||.|.++++.|+..|.   +|++++|+
T Consensus        20 g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          20 GKKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CCCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            34689999999999 8999999999999997   49999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.40  E-value=0.051  Score=51.93  Aligned_cols=41  Identities=24%  Similarity=0.174  Sum_probs=36.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKA  160 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~  160 (328)
                      ..+.||+++|.|. |.||+.+|+.|...|++|+++++++.+.
T Consensus       208 ~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra  248 (425)
T PRK05476        208 VLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICA  248 (425)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence            3579999999998 6899999999999999999999987654

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=95.35  E-value=0.062  Score=48.58  Aligned_cols=42  Identities=29%  Similarity=0.349  Sum_probs=36.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND  162 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~  162 (328)
                      ..|+.++|+|+++++|.+++..+...|++|+.++++.+..+.
T Consensus       138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~  179 (323)
T cd08241         138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLAL  179 (323)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHH
Confidence            368899999999999999999999999999999888765443

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=95.33  E-value=0.0059  Score=56.70  Aligned_cols=33  Identities=42%  Similarity=0.716  Sum_probs=30.3

Q ss_pred             ccccceecCCCcEEEEeCcCCccccCCCCCCcc
Q psy4246          19 PGWEERVTADGCVYYVNHATEGTQWTHPRTGVK   51 (328)
Q Consensus        19 ~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~   51 (328)
                      .+|.+..|.+|++||+|.+|++|.|.-|.+-+.
T Consensus        56 ~~Wke~~TadGkvyyyN~~TREs~W~iP~e~Kk   88 (590)
T COG5104          56 DPWKECRTADGKVYYYNSITRESRWKIPPERKK   88 (590)
T ss_pred             hhHHHHhhcCCceEEecCccccccccCChhhhc
Confidence            679999999999999999999999999987654

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=95.32  E-value=0.11  Score=46.79  Aligned_cols=42  Identities=24%  Similarity=0.217  Sum_probs=36.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND  162 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~  162 (328)
                      ..|+.++|.|+++++|.++++.+...|++|+++.++.++.+.
T Consensus       135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~  176 (320)
T cd05286         135 KPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAEL  176 (320)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            368899999999999999999988999999999888766544

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=95.32  E-value=0.051  Score=49.62  Aligned_cols=80  Identities=15%  Similarity=0.050  Sum_probs=51.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.+++|.|++++||.++++.....|++|+++.++.++.+.+.. +     +... ++  +..+.+..+. +.+.... .
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~-----g~~~-~~--~~~~~~~~~~-i~~~~~~-~  207 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA-L-----GIGP-VV--STEQPGWQDK-VREAAGG-A  207 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh-c-----CCCE-EE--cCCCchHHHH-HHHHhCC-C
Confidence            57899999999999999999998999999999887766444322 1     2221 12  2222222222 2222111 2


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|+++.+.|.
T Consensus       208 ~~d~v~d~~g~  218 (324)
T cd08292         208 PISVALDSVGG  218 (324)
T ss_pred             CCcEEEECCCC
Confidence            59999998874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>KOG0023|consensus

Probab=95.29  E-value=0.08  Score=48.04  Aligned_cols=76  Identities=14%  Similarity=0.124  Sum_probs=51.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC-CHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC-RLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-~~~~v~~~~~~~~~~~  200 (328)
                      .|+.+.|+|++| ||.--++.--.-|++|+++++...+-+++.+.|     |...   -+|.+ |++.++++.+..   .
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L-----GAd~---fv~~~~d~d~~~~~~~~~---d  248 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL-----GADV---FVDSTEDPDIMKAIMKTT---D  248 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc-----Ccce---eEEecCCHHHHHHHHHhh---c
Confidence            799999999977 986555444456999999999987777777666     3333   34555 777777666533   1


Q ss_pred             CCccEEEEc
Q psy4246         201 RSLNILVLN  209 (328)
Q Consensus       201 g~id~lvnn  209 (328)
                      +.+|.++|-
T Consensus       249 g~~~~v~~~  257 (360)
T KOG0023|consen  249 GGIDTVSNL  257 (360)
T ss_pred             Ccceeeeec
Confidence            445555543

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.27  E-value=0.042  Score=49.57  Aligned_cols=39  Identities=23%  Similarity=0.280  Sum_probs=35.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS  156 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~  156 (328)
                      ..+++||.++|.|++.=+|+.+|..|..+|++|.++.+.
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~  191 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR  191 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            347999999999999889999999999999999998765

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=95.17  E-value=0.12  Score=47.30  Aligned_cols=42  Identities=17%  Similarity=0.283  Sum_probs=36.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      .|..++|+|+++++|.++++.+...|++|+++.++.++.+.+
T Consensus       140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  181 (334)
T PTZ00354        140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC  181 (334)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999988888887665443

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=95.17  E-value=0.083  Score=49.88  Aligned_cols=75  Identities=21%  Similarity=0.317  Sum_probs=48.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|++++|.|+ ++||..+++.....|++|++++++.++..+..+++     +....   +|..+.+.+.       +..+
T Consensus       178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~l-----Ga~~~---i~~~~~~~v~-------~~~~  241 (375)
T PLN02178        178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRL-----GADSF---LVTTDSQKMK-------EAVG  241 (375)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhC-----CCcEE---EcCcCHHHHH-------HhhC
Confidence            5889999886 89999999888889999999887755433333332     32211   2333322222       2224


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      .+|++|.+.|.
T Consensus       242 ~~D~vid~~G~  252 (375)
T PLN02178        242 TMDFIIDTVSA  252 (375)
T ss_pred             CCcEEEECCCc
Confidence            69999998873

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.16  E-value=0.12  Score=42.70  Aligned_cols=86  Identities=20%  Similarity=0.101  Sum_probs=54.0

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCC-----CCeEEEEEcccCCHHHHHHHHHH--H
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-----SAQCIAMELNLCRLKSVKKFAEE--Y  196 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dls~~~~v~~~~~~--~  196 (328)
                      +++-+.|- |-+|..+|+.|+++|++|.+.+|+.++.+++.++-.....     -.++..+-.=+.+.+++++++..  +
T Consensus         2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i   80 (163)
T PF03446_consen    2 MKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI   80 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred             CEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence            35667776 7899999999999999999999998887765533110000     01233455557788888888876  6


Q ss_pred             HHhcCCccEEEEcc
Q psy4246         197 QKKFRSLNILVLNA  210 (328)
Q Consensus       197 ~~~~g~id~lvnnA  210 (328)
                      .....+=.++|++.
T Consensus        81 ~~~l~~g~iiid~s   94 (163)
T PF03446_consen   81 LAGLRPGKIIIDMS   94 (163)
T ss_dssp             GGGS-TTEEEEE-S
T ss_pred             hhccccceEEEecC
Confidence            55444445555443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08655 prephenate dehydrogenase; Provisional

Probab=95.12  E-value=0.17  Score=48.87  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=33.6

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHH
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND  162 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~  162 (328)
                      ++.|.||.|+||.++|+.|.+.|++|++.+|+.+...+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~   39 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE   39 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHH
Confidence            58899999999999999999999999999998766433

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.11  E-value=0.086  Score=50.84  Aligned_cols=42  Identities=21%  Similarity=0.217  Sum_probs=36.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKA  160 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~  160 (328)
                      +..+.||+++|.|.+ .||+.+|+.|...|++|+++++++...
T Consensus       249 ~~~LaGKtVgVIG~G-~IGr~vA~rL~a~Ga~ViV~e~dp~~a  290 (476)
T PTZ00075        249 DVMIAGKTVVVCGYG-DVGKGCAQALRGFGARVVVTEIDPICA  290 (476)
T ss_pred             CCCcCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCchhH
Confidence            357899999999986 599999999999999999998876543

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.10  E-value=0.08  Score=49.74  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=50.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|++++|.|+ ++||..++..+...|+ +|+++++++++++.+ .++     +..   ...|..+.+..++ +.++.  .
T Consensus       191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~-----Ga~---~~i~~~~~~~~~~-i~~~~--~  257 (371)
T cd08281         191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-REL-----GAT---ATVNAGDPNAVEQ-VRELT--G  257 (371)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHc-----CCc---eEeCCCchhHHHH-HHHHh--C
Confidence            5889999985 8999998888888899 688888887765533 332     322   1233333322222 22221  1


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +.+|++|.+.|.
T Consensus       258 ~g~d~vid~~G~  269 (371)
T cd08281         258 GGVDYAFEMAGS  269 (371)
T ss_pred             CCCCEEEECCCC
Confidence            369999999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.09  E-value=0.11  Score=40.73  Aligned_cols=76  Identities=16%  Similarity=0.222  Sum_probs=54.5

Q ss_pred             eEEEcCCCCCccHHHHHHHHH-CCCeEEE-eeCCh----------------------hHHHHHHHHHHhhCCCCeEEEEE
Q psy4246         125 NAIVTGANTGIGFETARSLAL-HGCRVIL-ACRSL----------------------DKANDAISKILTEKPSAQCIAME  180 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~-~Ga~Vi~-~~r~~----------------------~~~~~~~~~l~~~~~~~~~~~~~  180 (328)
                      .++|.|++|-+|+.+++.+.+ .|.+++. ++|+.                      +.++++..+       ..   +.
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-------~D---Vv   71 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-------AD---VV   71 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH--------S---EE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc-------CC---EE
Confidence            488999999999999999999 6777554 56665                      222222221       11   67


Q ss_pred             cccCCHHHHHHHHHHHHHhcCCccEEEEcccc
Q psy4246         181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV  212 (328)
Q Consensus       181 ~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg~  212 (328)
                      .|.|.++.+...++.+.+.  ++.+++-..|+
T Consensus        72 IDfT~p~~~~~~~~~~~~~--g~~~ViGTTG~  101 (124)
T PF01113_consen   72 IDFTNPDAVYDNLEYALKH--GVPLVIGTTGF  101 (124)
T ss_dssp             EEES-HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred             EEcCChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence            8999999999999888776  78899888886

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=95.08  E-value=0.088  Score=49.38  Aligned_cols=80  Identities=18%  Similarity=0.171  Sum_probs=52.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-HHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-KSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~~~~~~~  198 (328)
                      -.|.++||.|+ ++||..+++.+...|+ +|++++++.++.+.+ +++     +...   ..|..+. +.+.+.+.++..
T Consensus       186 ~~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~-----Ga~~---~i~~~~~~~~~~~~v~~~~~  255 (369)
T cd08301         186 KKGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKF-----GVTE---FVNPKDHDKPVQEVIAEMTG  255 (369)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc-----CCce---EEcccccchhHHHHHHHHhC
Confidence            36889999985 8999999888888898 799999987765543 222     3221   1233221 233343443332


Q ss_pred             hcCCccEEEEcccc
Q psy4246         199 KFRSLNILVLNAGV  212 (328)
Q Consensus       199 ~~g~id~lvnnAg~  212 (328)
                        +.+|+++.+.|.
T Consensus       256 --~~~d~vid~~G~  267 (369)
T cd08301         256 --GGVDYSFECTGN  267 (369)
T ss_pred             --CCCCEEEECCCC
Confidence              369999998873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=95.07  E-value=0.1  Score=49.75  Aligned_cols=43  Identities=9%  Similarity=0.048  Sum_probs=34.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC---eEEEeeCChhHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC---RVILACRSLDKANDAI  164 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga---~Vi~~~r~~~~~~~~~  164 (328)
                      .|.+++|.||+|+||..+++.+...|+   +|++++++.++++.+.
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~  220 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQ  220 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHH
Confidence            478999999999999998876666553   7999999988766543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.06  E-value=0.048  Score=45.90  Aligned_cols=44  Identities=30%  Similarity=0.254  Sum_probs=35.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHh
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILT  169 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~  169 (328)
                      +|.|.|+ |-+|..+|..++..|++|.+.+++.+.++...+.+..
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~   44 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER   44 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence            3667888 8999999999999999999999999887766655543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.05  E-value=0.085  Score=49.17  Aligned_cols=75  Identities=27%  Similarity=0.363  Sum_probs=48.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC---hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRS---LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..|+.++|+|+ |+||...++.+...|++|++++|+   +++.+ .++++     +...    +|..+. .+.+    . 
T Consensus       171 ~~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~-~~~~~-----Ga~~----v~~~~~-~~~~----~-  233 (355)
T cd08230         171 WNPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKAD-IVEEL-----GATY----VNSSKT-PVAE----V-  233 (355)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH-HHHHc-----CCEE----ecCCcc-chhh----h-
Confidence            36889999986 999999998888889999999984   44433 22222     3332    233322 2222    1 


Q ss_pred             HhcCCccEEEEcccc
Q psy4246         198 KKFRSLNILVLNAGV  212 (328)
Q Consensus       198 ~~~g~id~lvnnAg~  212 (328)
                      ...+.+|++|.++|.
T Consensus       234 ~~~~~~d~vid~~g~  248 (355)
T cd08230         234 KLVGEFDLIIEATGV  248 (355)
T ss_pred             hhcCCCCEEEECcCC
Confidence            123579999999884

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=95.02  E-value=0.07  Score=48.60  Aligned_cols=81  Identities=14%  Similarity=0.099  Sum_probs=52.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..|.+++|.|+++++|.++++.+...|++|+++.++.++.+.+ .++     +..   ...|..+....+++. +... .
T Consensus       137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~~~-~~~~-~  205 (323)
T cd05282         137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEEL-KAL-----GAD---EVIDSSPEDLAQRVK-EATG-G  205 (323)
T ss_pred             CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHH-Hhc-----CCC---EEecccchhHHHHHH-HHhc-C
Confidence            3678999999999999999999999999999988887654433 222     221   112222222222222 1111 1


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      ..+|+++++.|.
T Consensus       206 ~~~d~vl~~~g~  217 (323)
T cd05282         206 AGARLALDAVGG  217 (323)
T ss_pred             CCceEEEECCCC
Confidence            359999998873

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.01  E-value=0.049  Score=49.47  Aligned_cols=43  Identities=26%  Similarity=0.288  Sum_probs=38.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKA  160 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~  160 (328)
                      +.+++||.++|.|.++-+|+.+|..|.++|+.|.++.+....+
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l  196 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDA  196 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCH
Confidence            4579999999999999999999999999999999997765433

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.99  E-value=0.11  Score=47.82  Aligned_cols=41  Identities=22%  Similarity=0.214  Sum_probs=36.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND  162 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~  162 (328)
                      .+.++||.|+++++|.++++.+...|++|+++.+++++.+.
T Consensus       165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~  205 (341)
T cd08297         165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLEL  205 (341)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            57899999999999999999999999999999988766543

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.99  E-value=0.084  Score=51.01  Aligned_cols=65  Identities=15%  Similarity=0.263  Sum_probs=49.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKK  191 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  191 (328)
                      .+..+.++|.|+ |.+|..+++.|.+.|.+|++++++++..+....+.      ..+.++..|.++.+.+++
T Consensus       228 ~~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~  292 (453)
T PRK09496        228 EKPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEE  292 (453)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHh
Confidence            346788999999 99999999999999999999999987665543321      234567777777665433

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.98  E-value=0.04  Score=45.34  Aligned_cols=44  Identities=23%  Similarity=0.277  Sum_probs=33.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN  161 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~  161 (328)
                      +.+++||.++|.|.+.-+|+.++..|.++|+.|.++......++
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~   74 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ   74 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc
Confidence            35799999999999999999999999999999999876654443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=94.96  E-value=0.067  Score=47.87  Aligned_cols=77  Identities=17%  Similarity=0.206  Sum_probs=51.5

Q ss_pred             EEEcCCCCCccHHHHHHHHHCC----CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         126 AIVTGANTGIGFETARSLALHG----CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~G----a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +.|+||+|.+|..++..|+..|    .+|+++|.++++++....++.......    ....++-..+..+       .+.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~----~~~~i~~~~d~~~-------~~~   69 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL----ADIKVSITDDPYE-------AFK   69 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc----cCcEEEECCchHH-------HhC
Confidence            4689998899999999999999    689999999887777666665432110    0111111111111       224


Q ss_pred             CccEEEEccccC
Q psy4246         202 SLNILVLNAGVF  213 (328)
Q Consensus       202 ~id~lvnnAg~~  213 (328)
                      .-|++|..+|..
T Consensus        70 ~aDiVv~t~~~~   81 (263)
T cd00650          70 DADVVIITAGVG   81 (263)
T ss_pred             CCCEEEECCCCC
Confidence            689999999975

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.95  E-value=0.11  Score=48.32  Aligned_cols=40  Identities=25%  Similarity=0.294  Sum_probs=36.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      +.+|.||++.|.|- |.||+++|+.|...|++|++.+|+..
T Consensus       145 g~~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  184 (333)
T PRK13243        145 GYDVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRK  184 (333)
T ss_pred             ccCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            45799999999998 89999999999999999999998754

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=94.93  E-value=0.14  Score=47.30  Aligned_cols=75  Identities=13%  Similarity=0.288  Sum_probs=48.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.+++|+|+++++|.++++.....|++|+++.++ ++. +...++     +..   ..+|..+.+..+.+    .. .+
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~-~~~~~~-----g~~---~~~~~~~~~~~~~l----~~-~~  226 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAI-PLVKSL-----GAD---DVIDYNNEDFEEEL----TE-RG  226 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chH-HHHHHh-----CCc---eEEECCChhHHHHH----Hh-cC
Confidence            48999999999999999999988999998887764 222 222222     221   12233333333322    22 25


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      .+|+++++.|
T Consensus       227 ~vd~vi~~~g  236 (350)
T cd08248         227 KFDVILDTVG  236 (350)
T ss_pred             CCCEEEECCC
Confidence            7999999877

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=94.92  E-value=0.091  Score=47.32  Aligned_cols=80  Identities=16%  Similarity=0.293  Sum_probs=54.2

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|++++|+||+|..|.-+.+----.|++|+.++-..++..-+.+++     +-.   ..+|-..++    +.+.+.+..
T Consensus       149 k~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~l-----GfD---~~idyk~~d----~~~~L~~a~  216 (340)
T COG2130         149 KAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL-----GFD---AGIDYKAED----FAQALKEAC  216 (340)
T ss_pred             CCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhc-----CCc---eeeecCccc----HHHHHHHHC
Confidence            46999999999999997655444457999999998888876665554     211   123444332    233333333


Q ss_pred             -CCccEEEEcccc
Q psy4246         201 -RSLNILVLNAGV  212 (328)
Q Consensus       201 -g~id~lvnnAg~  212 (328)
                       ..||+.+-|.|-
T Consensus       217 P~GIDvyfeNVGg  229 (340)
T COG2130         217 PKGIDVYFENVGG  229 (340)
T ss_pred             CCCeEEEEEcCCc
Confidence             479999999985

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=94.84  E-value=0.11  Score=47.60  Aligned_cols=78  Identities=19%  Similarity=0.177  Sum_probs=47.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +++++++||++++|..+++.....|++|+++.++.++.+.+. ++     +... ++  |..+.+..+. +.++.. -.+
T Consensus       144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~-~~-----g~~~-~i--~~~~~~~~~~-v~~~~~-~~~  212 (324)
T cd08291         144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLK-KI-----GAEY-VL--NSSDPDFLED-LKELIA-KLN  212 (324)
T ss_pred             CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc-----CCcE-EE--ECCCccHHHH-HHHHhC-CCC
Confidence            345555699999999998877788999999988876654432 22     3222 22  2222222222 222211 135


Q ss_pred             ccEEEEccc
Q psy4246         203 LNILVLNAG  211 (328)
Q Consensus       203 id~lvnnAg  211 (328)
                      +|++|++.|
T Consensus       213 ~d~vid~~g  221 (324)
T cd08291         213 ATIFFDAVG  221 (324)
T ss_pred             CcEEEECCC
Confidence            999999887

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.79  E-value=0.094  Score=49.00  Aligned_cols=79  Identities=18%  Similarity=0.156  Sum_probs=49.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|+++||.|+ +++|..+++.+...|++ |++++++.++.+.+ +++     +.. .  ..|..+.+..+.+ .+... -
T Consensus       176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~-~~~-----Ga~-~--~i~~~~~~~~~~i-~~~~~-~  243 (358)
T TIGR03451       176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWA-REF-----GAT-H--TVNSSGTDPVEAI-RALTG-G  243 (358)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc-----CCc-e--EEcCCCcCHHHHH-HHHhC-C
Confidence            5889999985 89999998888888985 88888887765443 222     222 1  1233333222222 22111 1


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      ..+|++|.+.|.
T Consensus       244 ~g~d~vid~~g~  255 (358)
T TIGR03451       244 FGADVVIDAVGR  255 (358)
T ss_pred             CCCCEEEECCCC
Confidence            259999998884

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG0024|consensus

Probab=94.78  E-value=0.22  Score=45.31  Aligned_cols=83  Identities=16%  Similarity=0.130  Sum_probs=57.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.++||-|| |-||+.+-..+-.-|| +|++++-.+++++-+.+ +     |..+..-...-++.+.+.+.++......
T Consensus       169 ~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~-----Ga~~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  169 KGSKVLVLGA-GPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F-----GATVTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             cCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h-----CCeEEeeccccccHHHHHHHHHhhcccc
Confidence            4788999998 7899988887778897 79999999888765543 4     4444433333334444444444443322


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                       .+|+.|.|.|.
T Consensus       242 -~~d~~~dCsG~  252 (354)
T KOG0024|consen  242 -QPDVTFDCSGA  252 (354)
T ss_pred             -CCCeEEEccCc
Confidence             39999999996

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.76  E-value=0.018  Score=43.75  Aligned_cols=38  Identities=24%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      .+++||.+||.|| |.+|..-++.|++.|++|.+++...
T Consensus         3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence            3689999999999 8999999999999999999999885

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=94.75  E-value=0.18  Score=48.24  Aligned_cols=79  Identities=16%  Similarity=0.227  Sum_probs=51.0

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC------eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEEE
Q psy4246         126 AIVTGANTGIGFETARSLALHGC------RVILACRSL-------------------DKANDAISKILTEKPSAQCIAME  180 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga------~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~  180 (328)
                      |+|.|+ ||||-++++.|+..|.      ++.++|.+.                   .+.+.+.+.+.+..|..++..+.
T Consensus         2 VlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           2 VFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            677775 8999999999999997      788887532                   23444555566666777777777


Q ss_pred             cccCCHHHHHHHHHHHHHhcCCccEEEEc
Q psy4246         181 LNLCRLKSVKKFAEEYQKKFRSLNILVLN  209 (328)
Q Consensus       181 ~Dls~~~~v~~~~~~~~~~~g~id~lvnn  209 (328)
                      ..+....  ...+.  .+-+.++|+||++
T Consensus        81 ~~v~~~~--~~~~~--~~f~~~~DvVi~a  105 (435)
T cd01490          81 NRVGPET--EHIFN--DEFWEKLDGVANA  105 (435)
T ss_pred             cccChhh--hhhhh--HHHhcCCCEEEEC
Confidence            6664321  11111  1123467887765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=94.75  E-value=0.14  Score=48.70  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=34.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN  161 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~  161 (328)
                      .|.+++|+|+++++|.++++.+...|++|+++.++.++.+
T Consensus       189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~  228 (398)
T TIGR01751       189 PGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAE  228 (398)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence            5789999999999999999888889999888887765543

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PLN02827 Alcohol dehydrogenase-like

Probab=94.73  E-value=0.13  Score=48.57  Aligned_cols=80  Identities=15%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-HHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-KSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~~~~~~~  198 (328)
                      ..|+++||.|+ |+||..+++.+...|++ |++++++.++.+.+ .++     +... +  .|..+. +...+.+.++..
T Consensus       192 ~~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a-~~l-----Ga~~-~--i~~~~~~~~~~~~v~~~~~  261 (378)
T PLN02827        192 SKGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA-KTF-----GVTD-F--INPNDLSEPIQQVIKRMTG  261 (378)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc-----CCcE-E--EcccccchHHHHHHHHHhC
Confidence            35899999985 89999999888888985 77777777665433 232     3221 1  233321 233333333322


Q ss_pred             hcCCccEEEEcccc
Q psy4246         199 KFRSLNILVLNAGV  212 (328)
Q Consensus       199 ~~g~id~lvnnAg~  212 (328)
                        +.+|++|.++|.
T Consensus       262 --~g~d~vid~~G~  273 (378)
T PLN02827        262 --GGADYSFECVGD  273 (378)
T ss_pred             --CCCCEEEECCCC
Confidence              369999999984

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.69  E-value=0.61  Score=39.26  Aligned_cols=79  Identities=19%  Similarity=0.169  Sum_probs=59.8

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ...++.||+|+=-|++.|+   ++...+..|+ .|+.++.+.+.++-+.+...+.  .+++.++.+|+++..        
T Consensus        40 ~~g~l~g~~V~DlG~GTG~---La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~--------  106 (198)
T COG2263          40 LRGDLEGKTVLDLGAGTGI---LAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR--------  106 (198)
T ss_pred             HcCCcCCCEEEEcCCCcCH---HHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC--------
Confidence            3568999999999998775   4444455685 7999999998877665555442  678999999998644        


Q ss_pred             HHHhcCCccEEEEccccC
Q psy4246         196 YQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~  213 (328)
                           +++|.+|-|.-+.
T Consensus       107 -----~~~dtvimNPPFG  119 (198)
T COG2263         107 -----GKFDTVIMNPPFG  119 (198)
T ss_pred             -----CccceEEECCCCc
Confidence                 5788999988553

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.66  E-value=0.18  Score=43.44  Aligned_cols=38  Identities=21%  Similarity=0.395  Sum_probs=33.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      +++||.+||.|| |.+|..-++.|++.|++|.+++.+..
T Consensus         6 ~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         6 NLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             EcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            689999999998 67899999999999999999987643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=94.66  E-value=0.14  Score=47.52  Aligned_cols=77  Identities=26%  Similarity=0.290  Sum_probs=50.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|++++|+|+ +++|..+++.+...|+ +|++++++.++.+.+ .++     +...   ..|..+.+..+    ++.+..
T Consensus       172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~-~~~-----ga~~---~i~~~~~~~~~----~l~~~~  237 (351)
T cd08233         172 PGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELA-EEL-----GATI---VLDPTEVDVVA----EVRKLT  237 (351)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-----CCCE---EECCCccCHHH----HHHHHh
Confidence            5889999985 7999999999999999 788888887765433 222     2221   22433333222    222222


Q ss_pred             --CCccEEEEcccc
Q psy4246         201 --RSLNILVLNAGV  212 (328)
Q Consensus       201 --g~id~lvnnAg~  212 (328)
                        +.+|+++.+.|.
T Consensus       238 ~~~~~d~vid~~g~  251 (351)
T cd08233         238 GGGGVDVSFDCAGV  251 (351)
T ss_pred             CCCCCCEEEECCCC
Confidence              249999999873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=94.60  E-value=0.19  Score=47.50  Aligned_cols=43  Identities=21%  Similarity=0.244  Sum_probs=36.3

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      ..|.+++|+|++++||.+++..+...|++|+++.++.++.+.+
T Consensus       192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~  234 (393)
T cd08246         192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYC  234 (393)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            3578999999999999999988888999998888877665443

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PLN02494 adenosylhomocysteinase

Probab=94.58  E-value=0.14  Score=49.41  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=35.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK  159 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~  159 (328)
                      ..+.||+++|.|.+ .||+.+|+.+...|++|+++++++.+
T Consensus       250 i~LaGKtVvViGyG-~IGr~vA~~aka~Ga~VIV~e~dp~r  289 (477)
T PLN02494        250 VMIAGKVAVICGYG-DVGKGCAAAMKAAGARVIVTEIDPIC  289 (477)
T ss_pred             CccCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            34799999999985 99999999999999999999988754

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.57  E-value=0.063  Score=48.31  Aligned_cols=43  Identities=14%  Similarity=0.163  Sum_probs=36.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISK  166 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~  166 (328)
                      +|.++|.|+ ||-+++++..|++.|+ +|.+++|+.++.+++.+.
T Consensus       122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~  165 (272)
T PRK12550        122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL  165 (272)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence            568899987 8999999999999997 599999998877666544

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.54  E-value=0.056  Score=45.38  Aligned_cols=43  Identities=35%  Similarity=0.366  Sum_probs=36.5

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN  161 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~  161 (328)
                      ..++.||++.|.|. |.||+++|+.|..-|++|+..+|......
T Consensus        31 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~   73 (178)
T PF02826_consen   31 GRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEE   73 (178)
T ss_dssp             BS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred             ccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhh
Confidence            45789999999987 89999999999999999999999876543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.47  E-value=0.043  Score=47.13  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=34.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      .+++||.+||.|| |.+|...++.|.+.|++|+++++..
T Consensus         6 l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          6 IDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999 8999999999999999999998754

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=94.43  E-value=0.21  Score=46.98  Aligned_cols=79  Identities=19%  Similarity=0.221  Sum_probs=51.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHH-HHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK-SVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~-~v~~~~~~~~~~  199 (328)
                      .|.+++|.| +++||.+++..+...|+ +|++++++.++.+.+ .++     +..   ...+..+.+ .....+.++.. 
T Consensus       190 ~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a-~~l-----Ga~---~~i~~~~~~~~~~~~v~~~~~-  258 (373)
T cd08299         190 PGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA-KEL-----GAT---ECINPQDYKKPIQEVLTEMTD-  258 (373)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc-----CCc---eEecccccchhHHHHHHHHhC-
Confidence            578899996 58999999999999999 799999887765544 333     221   112222211 12333333322 


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                       +.+|+++++.|.
T Consensus       259 -~~~d~vld~~g~  270 (373)
T cd08299         259 -GGVDFSFEVIGR  270 (373)
T ss_pred             -CCCeEEEECCCC
Confidence             469999999873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=94.41  E-value=0.14  Score=47.03  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=54.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHH---HHH--HHHHHhhCCCCeEEEEEcccCCHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKA---NDA--ISKILTEKPSAQCIAMELNLCRLKSVKKFA  193 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~---~~~--~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  193 (328)
                      ..+.||++.|.|- |.||+++|+.|...|++|+..++..+..   ...  ..++.+......+..+.+-++.  +.+.++
T Consensus       132 ~~l~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~--~T~~li  208 (312)
T PRK15469        132 YHREDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTP--ETVGII  208 (312)
T ss_pred             CCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCH--HHHHHh
Confidence            4689999999987 7899999999999999999998764321   100  1122222224466666665553  445555


Q ss_pred             H-HHHHhcCCccEEEEccc
Q psy4246         194 E-EYQKKFRSLNILVLNAG  211 (328)
Q Consensus       194 ~-~~~~~~g~id~lvnnAg  211 (328)
                      . +..+... .+.++-|.|
T Consensus       209 ~~~~l~~mk-~ga~lIN~a  226 (312)
T PRK15469        209 NQQLLEQLP-DGAYLLNLA  226 (312)
T ss_pred             HHHHHhcCC-CCcEEEECC
Confidence            4 2333333 344444444

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.40  E-value=0.2  Score=46.24  Aligned_cols=41  Identities=29%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      .+++++|.| ++++|.+++..+...|++|+++++++++.+.+
T Consensus       163 ~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~  203 (333)
T cd08296         163 PGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLA  203 (333)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence            578999999 79999999998888999999999987665443

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.40  E-value=0.11  Score=46.88  Aligned_cols=39  Identities=15%  Similarity=0.172  Sum_probs=35.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS  156 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~  156 (328)
                      +.+++||.++|.|.|.-+|+.+|..|.++||.|.++...
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~  190 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL  190 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999999999999999999999999999887543

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=94.38  E-value=0.19  Score=47.10  Aligned_cols=80  Identities=19%  Similarity=0.163  Sum_probs=50.3

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-HHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-KSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~~~~~~~  198 (328)
                      ..|.+++|.|+ +++|..+++.+...|+ +|++++++.++.+.+ .++     +.. .+  .|..+. ..+.+.+.+...
T Consensus       183 ~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~~~-----ga~-~~--i~~~~~~~~~~~~~~~~~~  252 (365)
T cd08277         183 EPGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-KEF-----GAT-DF--INPKDSDKPVSEVIREMTG  252 (365)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc-----CCC-cE--eccccccchHHHHHHHHhC
Confidence            45889999975 8999999988888898 698899887765443 222     221 11  222221 112222333322


Q ss_pred             hcCCccEEEEcccc
Q psy4246         199 KFRSLNILVLNAGV  212 (328)
Q Consensus       199 ~~g~id~lvnnAg~  212 (328)
                        +.+|++|.+.|.
T Consensus       253 --~g~d~vid~~g~  264 (365)
T cd08277         253 --GGVDYSFECTGN  264 (365)
T ss_pred             --CCCCEEEECCCC
Confidence              469999998874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=94.37  E-value=0.19  Score=46.86  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=33.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKAN  161 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~  161 (328)
                      .|+++||+| ++++|.++++.+...|+ +|+++++++++.+
T Consensus       177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~  216 (361)
T cd08231         177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLE  216 (361)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            688999997 59999999988888999 8999988776544

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.37  E-value=0.17  Score=39.52  Aligned_cols=66  Identities=20%  Similarity=0.306  Sum_probs=44.3

Q ss_pred             CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC--CccEEEEccc
Q psy4246         134 GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR--SLNILVLNAG  211 (328)
Q Consensus       134 GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g--~id~lvnnAg  211 (328)
                      |||...+..+...|++|+++++++++.+.+ +++     |..   ..+|.++.+    +.+++.+..+  ++|++|.++|
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~-~~~-----Ga~---~~~~~~~~~----~~~~i~~~~~~~~~d~vid~~g   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELA-KEL-----GAD---HVIDYSDDD----FVEQIRELTGGRGVDVVIDCVG   67 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHH-HHT-----TES---EEEETTTSS----HHHHHHHHTTTSSEEEEEESSS
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHH-Hhh-----ccc---ccccccccc----cccccccccccccceEEEEecC
Confidence            588889988888999999999998775443 222     322   224444433    4444444443  6999999999


Q ss_pred             c
Q psy4246         212 V  212 (328)
Q Consensus       212 ~  212 (328)
                      .
T Consensus        68 ~   68 (130)
T PF00107_consen   68 S   68 (130)
T ss_dssp             S
T ss_pred             c
Confidence            4

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=94.37  E-value=0.068  Score=47.21  Aligned_cols=53  Identities=30%  Similarity=0.248  Sum_probs=44.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhh
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE  170 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~  170 (328)
                      +.+++.-++.|.|++|-||+++|+.|+.++....++.|+.+.......++..+
T Consensus       162 GidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e  214 (351)
T COG5322         162 GIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQE  214 (351)
T ss_pred             CcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhccc
Confidence            56889999999999999999999999999999999999877665544444433

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.35  E-value=0.2  Score=46.19  Aligned_cols=39  Identities=18%  Similarity=0.066  Sum_probs=33.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKAN  161 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~  161 (328)
                      +.+.+.|+|| |.+|..++..++..| +.|+++|++++.++
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~   43 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQ   43 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccch
Confidence            4567899997 889999999999999 78999999876654

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=94.32  E-value=0.23  Score=45.56  Aligned_cols=42  Identities=29%  Similarity=0.372  Sum_probs=36.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      .+.+++|.|+++.+|.++++.+...|++|+++.++.++.+.+
T Consensus       162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~  203 (334)
T PRK13771        162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIV  203 (334)
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999998887765544

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.26  E-value=0.21  Score=44.87  Aligned_cols=40  Identities=30%  Similarity=0.380  Sum_probs=32.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCChhHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLDKAN  161 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~~~~~  161 (328)
                      ..|++++|.|+ ++||..+++.+...|++ |++++++.++++
T Consensus       119 ~~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~  159 (280)
T TIGR03366       119 LKGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRRE  159 (280)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            36889999987 89999999888888997 888887766553

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
3rd5_A	291	Crystal Structure Of A Putative Uncharacterized Pro		8e-15
1vl8_A	267	Crystal Structure Of Gluconate 5-dehydrogenase (tm0		2e-11
1tk7_A	88	Nmr Structure Of Ww Domains (Ww3-4) From Suppressor		5e-11
1doh_A	283	Structure Of Trihydroxynaphthalene Reductase In Com		3e-09
1ybv_A	283	Structure Of Trihydroxynaphthalene Reductase In Com		3e-09
3o26_A	311	The Structure Of Salutaridine Reductase From Papave		1e-08
2kxq_A	90	Solution Structure Of Smurf2 Ww2 And Ww3 Bound To S		4e-08
2f21_A	162	Human Pin1 Fip Mutant Length = 162		5e-08
3rku_A	287	Substrate Fingerprint And The Structure Of Nadp+ De		6e-08
3ijr_A	291	2.05 Angstrom Resolution Crystal Structure Of A Sho		1e-07
3ioy_A	319	Structure Of Putative Short-Chain Dehydrogenase (Sa		2e-07
3i3o_A	291	2.06 Angstrom Resolution Crystal Structure Of A Sho		2e-07
1i5h_W	50	Solution Structure Of The Rnedd4 Wwiii Domain-Renac		3e-07
3l77_A	235	X-Ray Structure Alcohol Dehydrogenase From Archaeon		4e-07
3tn7_A	257	Crystal Structure Of Short-Chain Alcohol Dehydrogen		4e-07
1k2w_A	256	Crystal Structure Of Sorbitol Dehydrogenase From R.		7e-07
3ai1_A	263	The Crystal Structure Of L-Sorbose Reductase From G		7e-07
2jo9_A	37	Mouse Itch 3rd Ww Domain Complex With The Epstein-B		1e-06
3nyw_A	250	Crystal Structure Of A Betaketoacyl-[acp] Reductase		2e-06
3ai3_A	263	The Crystal Structure Of L-Sorbose Reductase From G		2e-06
3is3_A	270	Crystal Structure Of 17beta-Hydroxysteroid Dehydrog		3e-06
3g1t_A	258	Crystal Structure Of Short Chain Dehydrogenase From		3e-06
3itd_A	270	Crystal Structure Of An Inactive 17beta-Hydroxyster		4e-06
2joc_A	37	Mouse Itch 3rd Domain Phosphorylated In T30 Length		4e-06
2ysg_A	40	Solution Structure Of The Ww Domain From The Human		5e-06
1wmv_A	54	Solution Structure Of The Second Ww Domain Of Wwox		6e-06
4fc6_A	277	Studies On Dcr Shed New Light On Peroxisomal Beta-O		1e-05
2hrb_A	274	Crystal Structure Of Human Carbonyl Reductase 3, Co		1e-05
2zqv_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-05
2zqs_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-05
1n5d_A	288	Crystal Structure Of Porcine Testicular Carbonyl Re		1e-05
1zcn_A	161	Human Pin1 Ng Mutant Length = 161		1e-05
1pin_A	163	Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo		1e-05
2zqt_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-05
2zr5_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		2e-05
3f1l_A	252	The 0.95 A Structure Of An Oxidoreductase, Ycik Fro		2e-05
1f8a_B	167	Structural Basis For The Phosphoserine-Proline Reco		2e-05
3f5q_A	262	Crystal Structure Of Putative Short Chain Dehydroge		2e-05
3rkr_A	262	Crystal Structure Of A Metagenomic Short-Chain Oxid		2e-05
2zr4_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		2e-05
2law_A	38	Structure Of The Second Ww Domain From Human Yap In		2e-05
3f5s_A	255	Crystal Structure Of Putatitve Short Chain Dehydrog		3e-05
3iah_A	256	Crystal Structure Of Short Chain Dehydrogenase (yci		3e-05
1wr3_A	36	Solution Structure Of The First Ww Domain Of Nedd4-		4e-05
3v8b_A	283	Crystal Structure Of A 3-Ketoacyl-Acp Reductase Fro		4e-05
2pfg_A	276	Crystal Structure Of Human Cbr1 In Complex With Big		4e-05
2djy_A	42	Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Pe		4e-05
1wma_A	276	Crystal Structure Of Human Cbr1 In Complex With Hyd		4e-05
2ltz_A	37	Smurf2 Ww3 Domain In Complex With A Smad7 Derived P		5e-05
2ltv_A	36	Yap Ww2 In Complex With A Smad7 Derived Peptide Len		5e-05
1ahi_A	255	7 Alpha-Hydroxysteroid Dehydrogenase Complexed With		5e-05
3lf1_A	265	Apo Structure Of The Short Chain Oxidoreductase Q9h		6e-05
2dmv_A	43	Solution Structure Of The Second Ww Domain Of Itchy		6e-05
3enn_A	249	2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN		7e-05
2ltx_A	35	Smurf1 Ww2 Domain In Complex With A Smad7 Derived P		7e-05
2lb1_A	35	Structure Of The Second Domain Of Human Smurf1 In C		7e-05
3lyl_A	247	Structure Of 3-Oxoacyl-Acylcarrier Protein Reductas		7e-05
3emk_A	246	2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN		8e-05
2kyk_A	39	The Sandwich Region Between Two Lmp2a Py Motif Regu		8e-05
1yxm_A	303	Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa		9e-05
3o4r_A	261	Crystal Structure Of Human DehydrogenaseREDUCTASE (		1e-04
2kcf_A	36	The Nmr Solution Structure Of The Isolated Apo Pin1		1e-04
2zr6_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-04
4fgs_A	273	Crystal Structure Of A Probable Dehydrogenase Prote		1e-04
3kad_A	167	Structure-Guided Design Of Alpha-Amino Acid-Derived		1e-04
3tc5_A	166	Selective Targeting Of Disease-Relevant Protein Bin		1e-04
1wr4_A	36	Solution Structure Of The Second Ww Domain Of Nedd4		1e-04
2lb2_A	35	Structure Of The Second Domain Of Human Nedd4l In C		1e-04
3grp_A	266	2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-		1e-04
2itk_A	167	Human Pin1 Bound To D-Peptide Length = 167		1e-04
1e0m_A	37	Prototype Ww Domain Length = 37		1e-04
2lty_A	34	Nedd4l Ww2 Domain In Complex With A Smad7 Derived P		1e-04
3qiv_A	253	Crystal Structure Of A Putative Short-Chain Dehydro		1e-04
2lb3_A	36	Structure Of The Ww Domain Of Pin1 In Complex With		2e-04
3t4x_A	267	Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDU		2e-04
3f1k_A	252	Crystal Structure Of Ycik From E. Coli, An Oxidored		2e-04
2pnf_A	248	Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-		2e-04
1i6c_A	39	Solution Structure Of Pin1 Ww Domain Length = 39		2e-04
1i01_A	244	Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr		2e-04
1q7c_A	244	The Structure Of Betaketoacyl-[acp] Reductase Y151f		2e-04
2cf2_E	226	Architecture Of Mammalian Fatty Acid Synthase Lengt		2e-04
2ysf_A	40	Solution Structure Of The Fourth Ww Domain From The		2e-04
3e9q_A	273	Crystal Structure Of The Short Chain Dehydrogenase		2e-04
3dwf_A	276	Crystal Structure Of The Guinea Pig 11beta-Hydroxys		2e-04
3tfo_A	264	Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Car		3e-04
2b4q_A	276	Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex		3e-04
3g49_A	277	N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-		3e-04
1xse_A	295	Crystal Structure Of Guinea Pig 11beta-Hydroxystero		3e-04
3r3s_A	294	Structure Of The Ygha Oxidoreductase From Salmonell		3e-04
1gco_A	261	Crystal Structure Of Glucose Dehydrogenase Complexe		3e-04
1wr7_A	41	Solution Structure Of The Third Ww Domain Of Nedd4-		3e-04
3lz6_A	263	Guinea Pig 11beta Hydroxysteroid Dehydrogenase With		4e-04
1g6k_A	261	Crystal Structure Of Glucose Dehydrogenase Mutant E		4e-04
1gee_A	261	Crystal Structure Of Glucose Dehydrogenase Mutant Q		4e-04
2ez5_W	46	Solution Structure Of The Dnedd4 Ww3 Domain- Comm L		4e-04
1rwb_A	261	Cooperative Effect Of Two Surface Amino Acid Mutati		4e-04
3rih_A	293	Crystal Structure Of A Putative Short Chain Dehydro		4e-04
2jmf_A	53	Solution Structure Of The Su(Dx) Ww4- Notch Py Pept		5e-04
2zqu_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		5e-04
3v2g_A	271	Crystal Structure Of A DehydrogenaseREDUCTASE FROM		5e-04
3r1i_A	276	Crystal Structure Of A Short-Chain Type Dehydrogena		5e-04
2l4j_A	46	Yap Ww2 Length = 46		5e-04
3pk0_A	262	Crystal Structure Of Short-Chain DehydrogenaseREDUC		5e-04
4e6p_A	259	Crystal Structure Of A Probable Sorbitol Dehydrogen		7e-04
3tcz_A	158	Human Pin1 Bound To Cis Peptidomimetic Inhibitor Le		7e-04
2uvd_A	246	The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier		7e-04
3sj7_A	252	Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) F		8e-04
3ftp_A	270	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		9e-04

>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL 186
           ++TGAN+G+G  TAR LA  G  VI+A R   K   A   +     + Q    EL+L  L
Sbjct: 20  VITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDL 74
Query: 187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
            SV++FA+         ++L+ NAG+  + ++ T DGFE+    NHL HF LT
Sbjct: 75  SSVRRFADGVSGA----DVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALT 123

>pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL    A+VTG + G+GF  A+ LA  GC V++A R+L++A++A  K LTEK   + +A 
Sbjct: 18  DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQK-LTEKYGVETMAF 76
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--------FGLGFSHTEDGFETTFQVN 231
             ++   + VKK  E  ++KF  L+ +V  AG+        F L      D F    +VN
Sbjct: 77  RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPL------DEFRQVIEVN 130
Query: 232 HLAHFYL 238
               +Y+
Sbjct: 131 LFGTYYV 137

>pdb|1TK7|A Chain A, Nmr Structure Of Ww Domains (Ww3-4) From Suppressor Of Deltex Length = 88

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVS----GDLPLGWEKSVS 67
          D+   LP GWE+++ +D  VY+VNH    TQW  PRT   ++VS    G LP GWE   +
Sbjct: 8  DALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQ-GQEVSLINEGPLPPGWEIRYT 66
Query: 68 EDGKITFYNKDTHVKTYTDPR 88
            G+  F + +T   T+ DPR
Sbjct: 67 AAGERFFVDHNTRRTTFEDPR 87

>pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And 4-nitro-inden-1-one Length = 283

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTGA  GIG E A  L   GC+VI+    S + A + ++ I      A C+  + N+ 
Sbjct: 32  ALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACV--KANVG 89
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED----GFETTFQVNHLAHFYLTL 240
            ++ + +  EE  K F  L+I+  N+GV  + F H +D     F+  F +N    F++  
Sbjct: 90  VVEDIVRMFEEAVKIFGKLDIVCSNSGV--VSFGHVKDVTPEEFDRVFTINTRGQFFVAR 147
Query: 241 QLENALIKGAKLF 253
           +    L  G +L 
Sbjct: 148 EAYKHLEIGGRLI 160

>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And An Active Site Inhibitor Length = 283

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTGA  GIG E A  L   GC+VI+    S + A + ++ I      A C+  + N+ 
Sbjct: 32  ALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACV--KANVG 89
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED----GFETTFQVNHLAHFYLTL 240
            ++ + +  EE  K F  L+I+  N+GV  + F H +D     F+  F +N    F++  
Sbjct: 90  VVEDIVRMFEEAVKIFGKLDIVCSNSGV--VSFGHVKDVTPEEFDRVFTINTRGQFFVAR 147
Query: 241 QLENALIKGAKLF 253
           +    L  G +L 
Sbjct: 148 EAYKHLEIGGRLI 160

>pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTG N GIGFE  + L+ +G  V+L CR + K ++A+ K L        +  +L++  
Sbjct: 15  AVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEK-LKNSNHENVVFHQLDVTD 73
Query: 186 -LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFE 225
            + ++   A+  +  F  L+ILV NAGV   GFS   D F+
Sbjct: 74  PIATMSSLADFIKTHFGKLDILVNNAGV--AGFSVDADRFK 112

>pdb|2KXQ|A Chain A, Solution Structure Of Smurf2 Ww2 And Ww3 Bound To Smad7 Py Motif Containing Peptide Length = 90

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 9  PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR-----TGVKKKVSGDLPLGWE 63
          P   S  +LP G+E+R T  G VY+++  T  + W  PR     + +  +  G LP GWE
Sbjct: 2  PLGGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWE 61
Query: 64 KSVSEDGKITFYNKDTHVKTYTDPRI 89
             +  G++ F + +     +TDPR+
Sbjct: 62 IRNTATGRVYFVDHNNRTTQFTDPRL 87

>pdb|2F21|A Chain A, Human Pin1 Fip Mutant Length = 162

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+R++ADG VYY NH T  +QW  P
Sbjct: 4  EEKLPPGWEKRMSADGRVYYFNHITNASQWERP 36

>pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 121 LSNYNAIVTGANTGIGFETARSL--ALHG-CRVILACRSLDKANDAISKILTEKPSAQCI 177
           L+    ++TGA+ GIG  TA     A +G  ++ILA R L+K  +    I  E P+A+  
Sbjct: 31  LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVH 90
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG-VFG---LGFSHTEDGFETTFQVNHL 233
             +L++ + + +K F E   ++F+ ++ILV NAG   G   +G   TED  +  F  N  
Sbjct: 91  VAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATED-IQDVFDTNVT 149
Query: 234 AHFYLT------LQLENA--LIKGAKLFARQQGAATSIYCATSL 269
           A   +T       Q +N+  ++    +  R      SIYCA+  
Sbjct: 150 ALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKF 193

>pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad+ Length = 291

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 94  EEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILA 153
           E   NPL   Q  D + K  + L G+     N ++TG ++GIG   + + A  G  + +A
Sbjct: 25  ESLXNPLP--QFEDPNYKGSEKLKGK-----NVLITGGDSGIGRAVSIAFAKEGANIAIA 77
Query: 154 CRSLDKANDAI-SKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG- 211
              LD+  DA  +K   EK   +C+ +  +L   +  K   +E  ++  SLNILV N   
Sbjct: 78  Y--LDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQ 135
Query: 212 ---VFGLGFSHTEDGFETTFQVNHLAHFYLT------LQLENALIKGAKLFARQQGAATS 262
                GL +   E   E TF++N  ++F++T      L+  + +I  A + A +      
Sbjct: 136 QYPQQGLEYITAEQ-LEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNETLI 194
Query: 263 IYCAT---------SLDLSLPVSGSYFNNCCRCP 287
            Y AT         SL  SL   G   N     P
Sbjct: 195 DYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGP 228

>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase (Saro_0793) From Novosphingobium Aromaticivorans Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           +D +   A VTG   G+G    R L   GC+V +A    D  + A++ +  E    + + 
Sbjct: 4   KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           ++L++   +  K  A+E + +F  ++IL  NAGV
Sbjct: 64  VQLDVASREGFKMAADEVEARFGPVSILCNNAGV 97

>pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad-acetone Length = 291

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 30/210 (14%)
Query: 98  NPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL 157
           NPL   Q  D + K  + L G+     N ++TG ++GIG   + + A  G  + +A   L
Sbjct: 29  NPLP--QFEDPNYKGSEKLKGK-----NVLITGGDSGIGRAVSIAFAKEGANIAIAY--L 79
Query: 158 DKANDAI-SKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG----V 212
           D+  DA  +K   EK   +C+ +  +L   +  K   +E  ++  SLNILV N       
Sbjct: 80  DEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQ 139
Query: 213 FGLGFSHTEDGFETTFQVNHLAHFYLT------LQLENALIKGAKLFARQQGAATSIYCA 266
            GL +   E   E TF++N  ++F++T      L+  + +I  A + A +       Y A
Sbjct: 140 QGLEYITAEQ-LEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNETLIDYSA 198
Query: 267 T---------SLDLSLPVSGSYFNNCCRCP 287
           T         SL  SL   G   N     P
Sbjct: 199 TKGAIVAFTRSLSQSLVQKGIRVNGVAPGP 228

>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2 Peptide Complex Length = 50

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          DS+    LPPGWEER   DG V+++NH  + TQW  PR
Sbjct: 5  DSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPR 42

>pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp Length = 235

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A++TGA+ GIG   AR+LA  G  + L  RS+D+  + I+  L ++   +     L++ +
Sbjct: 5   AVITGASRGIGEAIARALARDGYALALGARSVDRL-EKIAHELMQEQGVEVFYHHLDVSK 63
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
            +SV++F+++  ++F  ++++V NAG+
Sbjct: 64  AESVEEFSKKVLERFGDVDVVVANAGL 90

>pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed With 5- Hydroxy-Nadp Length = 257

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A++TGA+ GIG   AR+LA  G  + L  RS+D+  + I+  L ++   +     L++ +
Sbjct: 27  AVITGASRGIGEAIARALARDGYALALGARSVDRL-EKIAHELMQEQGVEVFYHHLDVSK 85
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
            +SV++F+++  ++F  ++++V NAG+
Sbjct: 86  AESVEEFSKKVLERFGDVDVVVANAGL 112

>pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R. Sphaeroides Length = 256

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A++TG+  GIG   A +    G RV +A  +L+ A    ++I    P+A  IA  
Sbjct: 3   LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---GPAACAIA-- 57
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
           L++    S+ +   E   ++ S++ILV NA +F L      T + ++  F +N     ++
Sbjct: 58  LDVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFM 117
Query: 239 TLQLENALIKGAKL-----FARQQG----AATSIYCAT 267
              +  A+I G +       A Q G    A   +YCAT
Sbjct: 118 MQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCAT 155

>pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           +S   A++TG+++GIG   A   A  G  ++L  R +D+ ++A ++ L EK   + + + 
Sbjct: 5   ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEA-ARSLKEKFGVRVLEVA 63
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT-EDGFETTFQVNHLAHFYLT 239
           +++   + V    E  +  F   +ILV NAG    G + T  +  +  +Q     H    
Sbjct: 64  VDVATPEGVDAVVESVRSSFGGADILVNNAGT---GSNETIMEAADEKWQFYWELHVMAA 120
Query: 240 LQLENALIKGAKLFARQQGA 259
           ++L   L+ G +  AR  GA
Sbjct: 121 VRLARGLVPGMR--ARGGGA 138

>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr Virus Latent Membrane Protein 2a Derived Peptide Eeppppyed Length = 37

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
          LPPGWE+R  ++G VY+VNH T  TQW  PR+
Sbjct: 6  LPPGWEKRTDSNGRVYFVNHNTRITQWEDPRS 37

>pdb|3NYW|A Chain A, Crystal Structure Of A Betaketoacyl-[acp] Reductase (Fabg) From Bacteroides Thetaiotaomicron Length = 250

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRS---LDKANDAISKILTEKPSAQCIAMELN 182
           AI+TGA+ GIG   A  LA  G RV+L  RS   L+K +D I +  + K   + I + L+
Sbjct: 10  AIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIXR--SNKHVQEPIVLPLD 67
Query: 183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHF 236
           +          ++  +K+ +++ILV  A  F  G  S   D F    ++N +A +
Sbjct: 68  ITDCTKADTEIKDIHQKYGAVDILVNAAAXFXDGSLSEPVDNFRKIXEINVIAQY 122

>pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           +S   A++TG+++GIG   A   A  G  ++L  R +D+ ++A ++ L EK   + + + 
Sbjct: 5   ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEA-ARSLKEKFGVRVLEVA 63
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAG 211
           +++   + V    E  +  F   +ILV NAG
Sbjct: 64  VDVATPEGVDAVVESVRSSFGGADILVNNAG 94

>pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase (Apo Form) From Fungus Cochliobolus Lunatus Length = 270

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTG+  GIG   A  L   G +V++    S   A   +S+I  +   +  IA++ ++ 
Sbjct: 21  ALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEI--KALGSDAIAIKADIR 78
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFETTFQVNHLAHFYLTL 240
           ++  + K  ++    F  L+I V N+GV  + F H    TE+ F+  F +N    F++  
Sbjct: 79  QVPEIVKLFDQAVAHFGHLDIAVSNSGV--VSFGHLKDVTEEEFDRVFSLNTRGQFFVAR 136
Query: 241 QLENALIKGAKLFARQQGAATSIYCATSLDLSLP 274
           +    L +G ++              TS D S+P
Sbjct: 137 EAYRHLTEGGRIVLTSSN--------TSKDFSVP 162

>pdb|3G1T|A Chain A, Crystal Structure Of Short Chain Dehydrogenase From Salmonella Enterica Subsp. Enterica Serovar Typhi Str. Ct18 Length = 258

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK-PSAQCIAM 179
           L N   +VTGA+ GIG E A + A +G  VIL  R+ +K       I  E+    Q   +
Sbjct: 12  LQNRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHIADEQHVQPQWFTL 71
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTEDG--FETTFQVNHLAHF 236
           +L  C  +  ++ A+     +  L+ ++ NAG+ G +G    +D   ++   QVN  A F
Sbjct: 72  DLLTCTAEECRQVADRIAAHYPRLDGVLHNAGLLGEIGPMSEQDPQIWQDVMQVNVNATF 131
Query: 237 YLT 239
            LT
Sbjct: 132 MLT 134

>pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid Dehydrogenase (Y167f Mutated Form) From Fungus Cochliobolus Lunatus Length = 270

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTG+  GIG   A  L   G +V++    S   A   +S+I  +   +  IA++ ++ 
Sbjct: 21  ALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEI--KALGSDAIAIKADIR 78
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFETTFQVNHLAHFYLTL 240
           ++  + K  ++    F  L+I V N+GV  + F H    TE+ F+  F +N    F++  
Sbjct: 79  QVPEIVKLFDQAVAHFGHLDIAVSNSGV--VSFGHLKDVTEEEFDRVFSLNTRGQFFVAR 136
Query: 241 QLENALIKGAKLFARQQGAATSIYCATSLDLSLP 274
           +    L +G ++              TS D S+P
Sbjct: 137 EAYRHLTEGGRIVLTSSN--------TSKDFSVP 162

>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30 Length = 37

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
          LPPGWE+R  ++G VY+VNH T   QW  PR+
Sbjct: 6  LPPGWEKRTDSNGRVYFVNHNTRIXQWEDPRS 37

>pdb|2YSG|A Chain A, Solution Structure Of The Ww Domain From The Human Syntaxin- Binding Protein 4 Length = 40

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          S     LP GWEE  TADG  Y++NH T+ T W HP
Sbjct: 2  SSGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37

>pdb|1WMV|A Chain A, Solution Structure Of The Second Ww Domain Of Wwox Length = 54

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 51 KKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENP 99
          +K+V+GDLP GWE+   E+G++ F +      TY DPR+ F  +  +NP
Sbjct: 5  RKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVD--DNP 51

>pdb|4FC6|A Chain A, Studies On Dcr Shed New Light On Peroxisomal Beta-Oxidation: Crystal Structure Of The Ternary Complex Of Pdcr Length = 277

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L +  A +TG  +GIGF  A     HGC  ++A RSL +   A  K L      +C+ + 
Sbjct: 25  LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARK-LAGATGRRCLPLS 83
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILV 207
           +++    +V    ++  K+F  ++IL+
Sbjct: 84  MDVRAPPAVMAAVDQALKEFGRIDILI 110

>pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 126 AIVTGANTGIGFETARSLALHGCR-----VILACRSLDKANDAISKILTEKPSAQCIAME 180
           A+VTGAN GIG   AR L    CR     V+L  R + +   A+ ++  E  S +    +
Sbjct: 5   ALVTGANRGIGLAIAREL----CRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRF--HQ 58
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF-SHTEDGFETTFQVNHLAHFYLT 239
           L++  L+S++   +  +K++  LN+LV NA V    F S     F+   ++    +F+ T
Sbjct: 59  LDIDDLQSIRALRDFLRKEYGGLNVLVNNAAV---AFKSDDPMPFDIKAEMTLKTNFFAT 115
Query: 240 LQLENALIKGAKLFAR 255
             + N L+   K   R
Sbjct: 116 RNMCNELLPIMKPHGR 131

>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+R++ + G VYY NH T  +QW  P
Sbjct: 4  EEKLPPGWEKRMSRSSGRVYYANHITNASQWERP 37

>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+R++ + G VYY NH T  +QW  P
Sbjct: 4  EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37

>pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 25/122 (20%)
Query: 126 AIVTGANTGIGFETARSLALHGCR-----VILACRSLDKANDAISKILTEKPSAQCIAME 180
           A+VTGAN GIGF   R L    CR     V+L  R + +   A+ ++  E  S +    +
Sbjct: 7   ALVTGANKGIGFAIVRDL----CRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRF--HQ 60
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTL 240
           L++  L+S++   +  +K++  L++LV NA +               FQ+++   F++  
Sbjct: 61  LDIIDLQSIRALCDFLRKEYGGLDVLVNNAAI--------------AFQLDNPTPFHIQA 106
Query: 241 QL 242
           +L
Sbjct: 107 EL 108

>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant Length = 161

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+R++ +G VYY NH T  +QW  P
Sbjct: 4  EEKLPPGWEKRMS-NGRVYYFNHITNASQWERP 35

>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens Length = 163

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+R++ + G VYY NH T  +QW  P
Sbjct: 4  EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37

>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+R++ + G VYY NH T  +QW  P
Sbjct: 4  EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37

>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+R++ + G VYY NH T  +QW  P
Sbjct: 4  EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37

>pdb|3F1L|A Chain A, The 0.95 A Structure Of An Oxidoreductase, Ycik From E.Coli Length = 252

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 119 RDLSNYNAI-VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-SAQC 176
           +DL N   I VTGA+ GIG E A + A +G  VIL  R+ +K     S I  E     Q 
Sbjct: 7   QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQW 66
Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG---FETTFQVNHL 233
             ++L  C  ++ ++ A+     +  L+ ++ NAG+ G     +E     ++   QVN  
Sbjct: 67  FILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVN 126
Query: 234 AHFYLT 239
           A F LT
Sbjct: 127 ATFMLT 132

>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition By Group Iv Ww Domains Length = 167

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+R++ + G VYY NH T  +QW  P
Sbjct: 8  EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 41

>pdb|3F5Q|A Chain A, Crystal Structure Of Putative Short Chain Dehydrogenase From Escherichia Coli Cft073 Length = 262

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 119 RDLSNYNAI-VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-SAQC 176
           +DL N   I VTGA+ GIG E A + A +G  VIL  R+ +K     S I  E     Q 
Sbjct: 9   QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQW 68
Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG---FETTFQVNHL 233
             ++L  C  +  ++ A+     +  L+ ++ NAG+ G     +E     ++   QVN  
Sbjct: 69  FILDLLTCTSEDCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQDPQVWQDVMQVNVN 128
Query: 234 AHFYLT 239
           A F LT
Sbjct: 129 ATFMLT 134

>pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQC 176
           H   LS   A+VTGA+ GIG   AR L   G RV+L  R ++K      +I+     A+ 
Sbjct: 23  HMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAES 82
Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFE--TTFQVNH 232
            A +L+     ++  FA          ++LV NAGV  FG G  HT    E      VN 
Sbjct: 83  HACDLS--HSDAIAAFATGVLAAHGRCDVLVNNAGVGWFG-GPLHTMKPAEWDALIAVNL 139
Query: 233 LAHFYLTLQLENALI 247
            A + L      A+I
Sbjct: 140 KAPYLLLRAFAPAMI 154

>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+R++ + G VYY NH T   QW  P
Sbjct: 4  EEKLPPGWEKRMSRSSGRVYYFNHITNAAQWERP 37

>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In Complex With A Human Smad1 Derived Peptide Length = 38

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          E  LP GWE+ +T DG +YY+NH  + T W  PR
Sbjct: 4  EGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37

>pdb|3F5S|A Chain A, Crystal Structure Of Putatitve Short Chain Dehydrogenase From Shigella Flexneri 2a Str. 301 Length = 255

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 119 RDLSNYNAI-VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-SAQC 176
           +DL N   I VTGA+ GIG E A + A +G  VIL  R+ +K     S I  E     Q 
Sbjct: 5   QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQW 64
Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG---FETTFQVNHL 233
             ++L  C  ++ ++ A+     +  L+ ++ NAG+ G     +E     ++   Q+N  
Sbjct: 65  FILDLLTCTSENCQQLAQRIVVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQINVN 124
Query: 234 AHFYLT 239
           A F LT
Sbjct: 125 ATFMLT 130

>pdb|3IAH|A Chain A, Crystal Structure Of Short Chain Dehydrogenase (ycik) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 In Complex With Nadp And Acetate. Length = 256

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-SAQCIAM 179
           L N   +VTGA+ GIG E A + A +G  VIL  R+ +K       I  E+    Q   +
Sbjct: 13  LQNRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHIADEQHVQPQWFTL 72
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTEDG--FETTFQVNHLAHF 236
           +L  C  +  ++ A+     +  L+ ++ NAG+ G +G    +D   ++   QVN  A F
Sbjct: 73  DLLTCTAEECRQVADRIAAHYPRLDGVLHNAGLLGEIGPXSEQDPQIWQDVXQVNVNATF 132

>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2 Length = 36

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          LPPGWEE+V   G  YYVNH    TQW  P
Sbjct: 5  LPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34

>pdb|3V8B|A Chain A, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From Sinorhizobium Meliloti 1021 Length = 283

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A++TGA +GIG  TA +LA  G  V    R+  +  +   +I+      Q IA+E ++  
Sbjct: 31  ALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIV--GAGGQAIALEADVSD 88
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED----GFETTFQVNHLAHFYLTLQ 241
               +    +   KF  L+I+V NAG+ G+ ++  +D     ++ T  VN L   +LTL 
Sbjct: 89  ELQXRNAVRDLVLKFGHLDIVVANAGINGV-WAPIDDLKPFEWDETIAVN-LRGTFLTLH 146
Query: 242 LENALIK 248
           L    +K
Sbjct: 147 LTVPYLK 153

>pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 126 AIVTGANTGIGFETARSLA-LHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTG N GIG    R L  L    V+L  R + +   A+ ++  E  S +    +L++ 
Sbjct: 7   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRF--HQLDID 64
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            L+S++   +  +K++  L++LV NAG+
Sbjct: 65  DLQSIRALRDFLRKEYGGLDVLVNNAGI 92

>pdb|2DJY|A Chain A, Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Peptide Complex Length = 42

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          LPPGWE R TA G VY+V+H    TQ+T PR
Sbjct: 8  LPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 38

>pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 126 AIVTGANTGIGFETARSLA-LHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTG N GIG    R L  L    V+L  R + +   A+ ++  E  S +    +L++ 
Sbjct: 7   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRF--HQLDID 64
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            L+S++   +  +K++  L++LV NAG+
Sbjct: 65  DLQSIRALRDFLRKEYGGLDVLVNNAGI 92

>pdb|2LTZ|A Chain A, Smurf2 Ww3 Domain In Complex With A Smad7 Derived Peptide Length = 37

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          LPPGWE R TA G VY+V+H    TQ+T PR
Sbjct: 3  LPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 33

>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide Length = 36

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          LP GWE+ +T DG +YY+NH  + T W  PR
Sbjct: 3  LPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 33

>pdb|1AHI|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh And 7-Oxo Glycochenodeoxycholic Acid Length = 255

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AI+TGA  GIG E A + A  G  V+++  + D AN  + +I  ++   Q  A   ++  
Sbjct: 14  AIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI--QQLGGQAFACRCDITS 71
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYLT 239
            + +   A+    K   ++ILV NAG  G   F      F   +++N  + F+L+
Sbjct: 72  EQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLS 126

>pdb|3LF1|A Chain A, Apo Structure Of The Short Chain Oxidoreductase Q9hya2 From Pseudomonas Aeruginosa Pao1 Containing An Atypical Catalytic Center Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS   A+VTG ++GIG  T   L   G  V    R  ++   A S +    P A+  A 
Sbjct: 5   DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFAS 64
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG 211
             ++     V+ FAE  ++     +ILV NAG
Sbjct: 65  VCDVLDALQVRAFAEACERTLGCASILVNNAG 96

>pdb|2DMV|A Chain A, Solution Structure Of The Second Ww Domain Of Itchy Homolog E3 Ubiquitin Protein Ligase (Itch) Length = 43

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          S     LPPGWE+RV   G VYYV+H  + T W  P
Sbjct: 2  SSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRP 37

>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE FROM BRUCELLA Melitensis (P43212) Length = 249

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL+   A+VTGA  G+G   AR+L   G  V L     +K  +     L  +   +    
Sbjct: 7   DLTGRKALVTGATGGLGEAIARALHAQGAIVGLHGTREEKLKE-----LAAELGERIFVF 61
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
             NL   ++VK   ++ +++   ++ILV NAG+   GL    +++ ++    VN  + F 
Sbjct: 62  PANLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWDAVLTVNLTSVFN 121
Query: 238 LTLQLENALIK 248
           LT +L + +++
Sbjct: 122 LTRELTHPMMR 132

>pdb|2LTX|A Chain A, Smurf1 Ww2 Domain In Complex With A Smad7 Derived Peptide Length = 35

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          LPPGWE R T  G +Y+V+H    TQ+T PR
Sbjct: 3  LPPGWEVRSTVSGRIYFVDHNNRTTQFTDPR 33

>pdb|2LB1|A Chain A, Structure Of The Second Domain Of Human Smurf1 In Complex With A Human Smad1 Derived Peptide Length = 35

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          LPPGWE R T  G +Y+V+H    TQ+T PR
Sbjct: 4  LPPGWEVRSTVSGRIYFVDHNNRTTQFTDPR 34

>pdb|3LYL|A Chain A, Structure Of 3-Oxoacyl-Acylcarrier Protein Reductase, Fabg From Francisella Tularensis Length = 247

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA+ GIGFE A +LA  G  V+    S   A +       EK   +   + LN+  
Sbjct: 8   ALVTGASRGIGFEVAHALASKGATVVGTATSQASA-EKFENSXKEK-GFKARGLVLNISD 65
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHF 236
           ++S++ F  E + +  +++ILV NAG+    L    +ED +++    N  + F
Sbjct: 66  IESIQNFFAEIKAENLAIDILVNNAGITRDNLXXRXSEDEWQSVINTNLSSIF 118

>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE From Brucella Melitensis Length = 246

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL+   A+VTGA  G+G   AR+L   G  V L     +K  +     L  +   +    
Sbjct: 4   DLTGRKALVTGATGGLGEAIARALHAQGAIVGLHGTREEKLKE-----LAAELGERIFVF 58
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
             NL   ++VK   ++ +++   ++ILV NAG+   GL    +++ ++    VN  + F 
Sbjct: 59  PANLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWDAVLTVNLTSVFN 118
Query: 238 LTLQLENALIK 248
           LT +L + +++
Sbjct: 119 LTRELTHPMMR 129

>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates The Interaction Between Aip4ww2domain And Py Motif Length = 39

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          LPPGWE RV   G +YYV+H T  T W  P
Sbjct: 7  LPPGWERRVDNMGRIYYVDHFTRTTTWQRP 36

>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa Reductase Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP---SAQCIAMELN 182
           AIVTG  TGIG    + L   G  V++A R L++   A  ++    P    A+ I ++ N
Sbjct: 21  AIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCN 80
Query: 183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTE----DGFETTFQVNHLAHFYL 238
           +   + V    +     F  +N LV N G  G   S  E     G+    + N    FY+
Sbjct: 81  IRNEEEVNNLVKSTLDTFGKINFLVNNGG--GQFLSPAEHISSKGWHAVLETNLTGTFYM 138
Query: 239 TLQLENALIK 248
              + ++ +K
Sbjct: 139 CKAVYSSWMK 148

>pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR FAMILY) MEMBER 4 (Dhrs4) Length = 261

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 119 RD-LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           RD L+N  A+VT +  GIGF  AR LA  G  V+++ R     + A++ +  E  S    
Sbjct: 10  RDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGT 69
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLA 234
              +   + +  ++      K    ++ILV NA V   FG     TE+ ++ T  +N  A
Sbjct: 70  VCHVG--KAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKA 127
Query: 235 HFYLT 239
              +T
Sbjct: 128 PALMT 132

>pdb|2KCF|A Chain A, The Nmr Solution Structure Of The Isolated Apo Pin1 Ww Domain Length = 36

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 16 ELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          +LPPGWE+R++ + G VYY NH T  +QW  P
Sbjct: 3  KLPPGWEKRMSRSSGRVYYFNHITNASQWERP 34

>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+ ++ + G VYY NH T  +QW  P
Sbjct: 4  EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 37

>pdb|4FGS|A Chain A, Crystal Structure Of A Probable Dehydrogenase Protein Length = 273

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A++TGA +GIG   A+     G RV +  R  D  + AI++I         + ++ +   
Sbjct: 32  AVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQADSAN 86
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAG---VFGLGFSHTEDGFETTFQVN 231
           L  + +  E+ + +   +++L +NAG      LG   TE+ ++ TF  N
Sbjct: 87  LAELDRLYEKVKAEAGRIDVLFVNAGGGSXLPLG-EVTEEQYDDTFDRN 134

>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inhibitors Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+ ++ + G VYY NH T  +QW  P
Sbjct: 8  EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41

>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding Domains By O- Phosphorylated Natural Product Derivatives Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+ ++ + G VYY NH T  +QW  P
Sbjct: 7  EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40

>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2 Length = 36

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          LP GWEER  A G  YYVNH    T WT P
Sbjct: 5  LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34

>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex With A Phosphorylated Ptpy Motif Derived From Human Smad3 Length = 35

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          LP GWEER  A G  YYVNH    T WT P
Sbjct: 2  LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 31

>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Bartonella Henselae Length = 266

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L+   A+VTGA  GIG   AR     G  V L     DK  +  + +             
Sbjct: 25  LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFS 79
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYL 238
            NL   KS+K+ AE  +++   ++ILV NAG+   GL     +  ++    VN  A   L
Sbjct: 80  ANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTL 139
Query: 239 TLQLENALIK 248
           T +L +++++
Sbjct: 140 TRELIHSMMR 149

>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+ ++ + G VYY NH T  +QW  P
Sbjct: 8  EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41

>pdb|1E0M|A Chain A, Prototype Ww Domain Length = 37

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          LPPGW+E  T +G  YY NH T+ + WT PR
Sbjct: 4  LPPGWDEYKTHNGKTYYYNHNTKTSTWTDPR 34

>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived Peptide Length = 34

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          LP GWEER  A G  YYVNH    T WT P
Sbjct: 3  LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 32

>pdb|3QIV|A Chain A, Crystal Structure Of A Putative Short-Chain Dehydrogenase Or 3- Oxoacyl-[acyl-Carrier-Protein] Reductase From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Query: 123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELN 182
           N   IVTG+  GIG   A +LA  G  V++A  + + A     +I+ +  +A  I++ ++
Sbjct: 9   NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTA--ISVAVD 66
Query: 183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFY---LT 239
           +   +S K  A+    +F  ++ LV NA +FG        G +  F +     +Y   ++
Sbjct: 67  VSDPESAKAMADRTLAEFGGIDYLVNNAAIFG--------GMKLDFLLTIDPEYYKKFMS 118
Query: 240 LQLENAL 246
           + L+ AL
Sbjct: 119 VNLDGAL 125

>pdb|2LB3|A Chain A, Structure Of The Ww Domain Of Pin1 In Complex With A Human Phosphorylated Smad3 Derived Peptide Length = 36

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 16 ELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          +LPPGWE+R++ + G VYY NH T  +QW  P
Sbjct: 1  KLPPGWEKRMSRSSGRVYYFNHITNASQWERP 32

>pdb|3T4X|A Chain A, Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDUCTASE FROM Bacillus Anthracis Str. Ames Ancestor Length = 267

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A+VTG+  GIG   A SL   G  V++  R  +  N+ I +I  + P A    + 
Sbjct: 8   LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVV 67
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF 213
            +L   +  +   E+Y K    ++IL+ N G+F
Sbjct: 68  ADLGTEQGCQDVIEKYPK----VDILINNLGIF 96

>pdb|3F1K|A Chain A, Crystal Structure Of Ycik From E. Coli, An Oxidoreductase, Complexed With Nadp+ At 2.6a Resolution Length = 252

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 119 RDLSNYNAI-VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-SAQC 176
           +DL N   I VTGA+ GIG E A + A +G  VIL  R+ +K     S I  E     Q 
Sbjct: 7   QDLLNDRIILVTGASDGIGREAAXTYARYGATVILLGRNEEKLRQVASHINEETGRQPQW 66
Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG 214
             ++L  C  ++ ++ A+     +  L+ ++ NAG+ G
Sbjct: 67  FILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLG 104

>pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier Protein) Reductase Length = 248

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           ++VTG+  GIG   A  LA  G  VI+   S ++A  A+++ +  K   +   +E+NL  
Sbjct: 10  SLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERA-KAVAEEIANKYGVKAHGVEMNLLS 68
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
            +S+ K  EE       ++ILV NAG+
Sbjct: 69  EESINKAFEEIYNLVDGIDILVNNAGI 95

>pdb|1I6C|A Chain A, Solution Structure Of Pin1 Ww Domain Length = 39

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 16 ELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          +LPPGWE+R++ + G VYY NH T  +QW  P
Sbjct: 1  KLPPGWEKRMSRSSGRVYYFNHITNASQWERP 32

>pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA+ GIG   A +LA  G +VI    S + A  AIS  L     A    + LN+  
Sbjct: 8   ALVTGASRGIGRAIAETLAARGAKVIGTATSENGA-QAISDYL----GANGKGLMLNVTD 62
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
             S++   E+ + +F  ++ILV NAG+
Sbjct: 63  PASIESVLEKIRAEFGEVDILVNNAGI 89

>pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA+ GIG   A +LA  G +VI    S + A  AIS  L     A    + LN+  
Sbjct: 8   ALVTGASRGIGRAIAETLAARGAKVIGTATSENGA-QAISDYL----GANGKGLMLNVTD 62
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
             S++   E+ + +F  ++ILV NAG+
Sbjct: 63  PASIESVLEKIRAEFGEVDILVNNAGI 89

>pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase Length = 226

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA+ GIG   A +LA  G +VI    S + A  AIS  L     A    + LN+  
Sbjct: 8   ALVTGASRGIGRAIAETLAARGAKVIGTATSENGA-QAISDYL----GANGKGLMLNVTD 62
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
             S++   E+ + +F  ++ILV NAG+
Sbjct: 63  PASIESVLEKIRAEFGEVDILVNNAGI 89

>pdb|2YSF|A Chain A, Solution Structure Of The Fourth Ww Domain From The Human E3 Ubiquitin-Protein Ligase Itchy Homolog, Itch Length = 40

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
          S     LP GWE R T DG  Y+V+H    T +  PRTG
Sbjct: 2  SSGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTG 40

>pdb|3E9Q|A Chain A, Crystal Structure Of The Short Chain Dehydrogenase From Shigella Flexneri Length = 273

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 119 RDLSNYNAI-VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-SAQC 176
           +DL N   I VTGA+ GIG E A + A +G  VIL  R+ +K     S I  E     Q 
Sbjct: 28  QDLLNDRIILVTGASDGIGREAAXTYARYGATVILLGRNEEKLRQVASHINEETGRQPQW 87
Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG 214
             ++L  C  ++ ++ A+     +  L+ ++ NAG+ G
Sbjct: 88  FILDLLTCTSENCQQLAQRIVVNYPRLDGVLHNAGLLG 125

>pdb|3DWF|A Chain A, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Mutant F278e Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL-TEKPSAQCIAM 179
           L     IVTGA+ GIG E A  LA  G  V++  RS +     +++ L     SA  IA 
Sbjct: 9   LQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYIAG 68
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTE-DGFETTFQVNHLAHFY 237
            +    +   ++F  E       L++L+LN  ++  L F H E D    + +VN   H +
Sbjct: 69  SME--DMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEVNF--HSF 124
Query: 238 LTLQLENALIKGAKLFARQQGA---ATSIYCATSLDLSLPVSGSYF 280
           + L      +    +  + QG+    +S+    +  L  P S S F
Sbjct: 125 VVLS-----VAAMPMLMQSQGSIAVVSSVAGKITYPLIAPYSASKF 165

>pdb|3TFO|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From Sinorhizobium Meliloti Length = 264

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 16/153 (10%)
Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA--QCIAMELNLC 184
           ++TGA+ GIG   AR L + G +++L  R   +    I  I TE   A    +A  L++ 
Sbjct: 8   LITGASGGIGEGIARELGVAGAKILLGARRQAR----IEAIATEIRDAGGTALAQVLDVT 63
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY----- 237
              SV  FA+     +  +++LV NAGV  L    +   D +E    VN     +     
Sbjct: 64  DRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAV 123
Query: 238 ---LTLQLENALIKGAKLFARQQGAATSIYCAT 267
              +  Q    +I    + A       ++YCAT
Sbjct: 124 LPIMEAQRSGQIINIGSIGALSVVPTAAVYCAT 156

>pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L+   A+VTG + GIG   A+ L   G RV +  R  +   D  +++        C A+
Sbjct: 26  SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRL---SAYGDCQAI 82
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV-FGLGF-SHTEDGFETTFQVNHLAHFY 237
             +L      ++ A+   +    L+ILV NAG  +G    S+   G+E   Q+N  + F 
Sbjct: 83  PADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFS 142
Query: 238 LTLQL 242
              QL
Sbjct: 143 CIQQL 147

>pdb|3G49|A Chain A, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of Pf-915275 Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 114 QILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL-TEKP 172
           ++L G+ +     IVTGA+ GIG E A  LA  G  V++  RS +     +++ L     
Sbjct: 7   EMLQGKKV-----IVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAA 61
Query: 173 SAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTE-DGFETTFQV 230
           SA  IA  +    +   ++F  E       L++L+LN  ++  L F H E D    + +V
Sbjct: 62  SAHYIAGSME--DMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEV 119
Query: 231 NHLAHFYLTLQLENALIKGAKLFARQQGA---ATSIYCATSLDLSLPVSGSYF 280
           N   H ++ L      +    +  + QG+    +S+    +  L  P S S F
Sbjct: 120 NF--HSFVVLS-----VAAMPMLMQSQGSIAVVSSVAGKITYPLIAPYSASKF 165

>pdb|1XSE|A Chain A, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Length = 295

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL-TEKPSAQCIAM 179
           L     IVTGA+ GIG E A  LA  G  V++  RS +     +++ L     SA  IA 
Sbjct: 30  LQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYIAG 89
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTE-DGFETTFQVNHLAHFY 237
            +    +   ++F  E       L++L+LN  ++  L F H E D    + +VN   H +
Sbjct: 90  SME--DMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEVNF--HSF 145
Query: 238 LTLQLENALIKGAKLFARQQGA---ATSIYCATSLDLSLPVSGSYF 280
           + L      +    +  + QG+    +S+    +  L  P S S F
Sbjct: 146 VVLS-----VAAMPMLMQSQGSIAVVSSVAGKITYPLIAPYSASKF 186

>pdb|3R3S|A Chain A, Structure Of The Ygha Oxidoreductase From Salmonella Enterica Length = 294

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           GR L +  A+VTG ++GIG   A + A  G  V +     ++ +    K L E+   + +
Sbjct: 45  GR-LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAV 103
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG---VFGLGFSHTEDGFETTFQVNHLA 234
            +  +L      +    + ++    L+IL L AG           T + F+ TF VN  A
Sbjct: 104 LLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFA 163
Query: 235 HFYLTLQLENALIKGAKLF 253
            F++T +    L KGA + 
Sbjct: 164 LFWITQEAIPLLPKGASII 182

>pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With Nad+ Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCI 177
           +DL     ++TG++TG+G   A   A    +V++  RS  D+AN  + +I  +K   + I
Sbjct: 3   KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI--KKVGGEAI 60
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           A++ ++     V    +   K+F  L++++ NAG+
Sbjct: 61  AVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95

>pdb|1WR7|A Chain A, Solution Structure Of The Third Ww Domain Of Nedd4-2 Length = 41

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          LPPGWE R+  +G  ++++H T+ T W  PR
Sbjct: 9  LPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39

>pdb|3LZ6|A Chain A, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With Pf-877423 Length = 263

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL-TEKPSAQCIAM 179
           L     IVTGA+ GIG E A  LA  G  V++  RS +     +++ L     SA  IA 
Sbjct: 7   LQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYIAG 66
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTE-DGFETTFQVNHLAHFY 237
            +    +   ++F  E       L++L+LN  ++  L F H E D    + +VN   H +
Sbjct: 67  SME--DMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEVNF--HSF 122
Query: 238 LTLQLENALIKGAKLFARQQGA---ATSIYCATSLDLSLPVSGSYF 280
           + L      +    +  + QG+    +S+    +  L  P S S F
Sbjct: 123 VVLS-----VAAMPMLMQSQGSIAVVSSVAGKITYPLIAPYSASKF 163

>pdb|1G6K|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant E96a Complexed With Nad+ Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCI 177
           +DL     ++TG++TG+G   A   A    +V++  RS  D+AN  + +I  +K   + I
Sbjct: 3   KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI--KKVGGEAI 60
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           A++ ++     V    +   K+F  L++++ NAG+
Sbjct: 61  AVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95

>pdb|1GEE|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l Complexed With Nad+ Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCI 177
           +DL     ++TG++TG+G   A   A    +V++  RS  D+AN  + +I  +K   + I
Sbjct: 3   KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI--KKVGGEAI 60
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           A++ ++     V    +   K+F  L++++ NAG+
Sbjct: 61  AVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95

>pdb|2EZ5|W Chain W, Solution Structure Of The Dnedd4 Ww3 Domain- Comm Lpsy Peptide Complex Length = 46

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
          S  E+ LPP W  +V  +G  ++++HA+  T W  PR G
Sbjct: 5  SGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG 43

>pdb|1RWB|A Chain A, Cooperative Effect Of Two Surface Amino Acid Mutations (Q252l And E170k) Of Glucose Dehydrogenase From Bacillus Megaterium Iwg3 For The Stabilization Of Oligomeric State Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCI 177
           +DL     ++TG++TG+G   A   A    +V++  RS  D+AN  + +I  +K   + I
Sbjct: 3   KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI--KKVGGEAI 60
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           A++ ++     V    +   K+F  L++++ NAG+
Sbjct: 61  AVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95

>pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase Or Reductase From Mycobacterium Abscessus Length = 293

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS  + +VTG   GIG   A   A  G  V +A RS  +   +++  L E  +   I +
Sbjct: 38  DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARS-PRELSSVTAELGELGAGNVIGV 96
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF 213
            L++    S    A      F +L+++  NAG+F
Sbjct: 97  RLDVSDPGSCADAARTVVDAFGALDVVCANAGIF 130

>pdb|2JMF|A Chain A, Solution Structure Of The Su(Dx) Ww4- Notch Py Peptide Complex Length = 53

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
          +E  LPPGWE R TA G  ++V+H T  T +  PR G
Sbjct: 15 NEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG 51

>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          E++LPPGWE+R++ + G VYY NH T  +Q   P
Sbjct: 4  EEKLPPGWEKRMSRSSGRVYYFNHITNASQAERP 37

>pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM SINORHIZOBIUM Meliloti 1021 Length = 271

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAM 179
           L+   A VTG + GIG   A+ LAL G  V L    + ++A   +S+I  E+   + +A+
Sbjct: 29  LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEI--EQAGGRAVAI 86
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF 213
             +    +++++   E  +    L+ILV +AG++
Sbjct: 87  RADNRDAEAIEQAIRETVEALGGLDILVNSAGIW 120

>pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 112 ALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR---SLDKANDAISKIL 168
           ++ +L   DLS   A++TGA+TGIG + A + A  G +V +A R   +L    D I+ + 
Sbjct: 21  SMSVLDLFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV- 79
Query: 169 TEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF 213
                 + + +  ++ +   V+   ++   +   ++I V NAG+ 
Sbjct: 80  ----GGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIV 120

>pdb|2L4J|A Chain A, Yap Ww2 Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          S +   LP GWE+ +T +G +YY+NH  + T W  PR
Sbjct: 6  SPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPR 42

>pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE SDR FROM Mycobacterium Smegmatis Length = 262

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL   + +VTG   GIG   A   A  G  V +A RS     DA    L +  S + I +
Sbjct: 7   DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADI-DACVADLDQLGSGKVIGV 65
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
           + ++         A    ++F  ++++  NAGVF      + T +     F VN    FY
Sbjct: 66  QTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFY 125
Query: 238 LTLQLENALI 247
                 +ALI
Sbjct: 126 AVQACLDALI 135

>pdb|4E6P|A Chain A, Crystal Structure Of A Probable Sorbitol Dehydrogenase (Target Psi- 012078) From Sinorhizobium Meliloti 1021 Length = 259

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L   +A++TG+  GIG   A +    G  V +A   +++A  A ++I    P+A   A++
Sbjct: 6   LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GPAAY--AVQ 60
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
            ++ R  S+        +    L+ILV NA +F L      T + +E  F +N +A    
Sbjct: 61  XDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAIN-VAGTLF 119
Query: 239 TLQLE----------NALIKGAKLFARQQGAATSIYCAT 267
           TLQ              +I  A    R+  A  +IYCAT
Sbjct: 120 TLQAAARQXIAQGRGGKIINXASQAGRRGEALVAIYCAT 158

>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor Length = 158

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 16 ELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          +LPPGWE+ ++ + G VYY NH T  +QW  P
Sbjct: 1  KLPPGWEKAMSRSSGRVYYFNHITNASQWERP 32

>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTGA+ GIG   A  LA  G  V++    +  KAN+ + +I  +K  +  IA+  ++ 
Sbjct: 7   ALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEI--KKLGSDAIAVRADVA 64
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGV 212
             + V    ++    F  ++ILV NAGV
Sbjct: 65  NAEDVTNMVKQTVDVFGQVDILVNNAGV 92

>pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From Staphylococcus Aureus Complex With Nadph Length = 252

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 125 NAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNL 183
           +A+VTGA+ GIG   A  LA  G  V +    S +KA   + +I  +       A++ N+
Sbjct: 12  SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI--KAKGVDSFAIQANV 69
Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
                VK   +E   +F SL++LV NAG+
Sbjct: 70  ADADEVKAMIKEVVSQFGSLDVLVNNAGI 98

>pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Burkholderia Pseudomallei At 2.05 A Resolution Length = 270

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           + L    AIVTGA+ GIG   A  LA  G  VI    + +   + I     ++   +   
Sbjct: 24  KTLDKQVAIVTGASRGIGRAIALELARRGAMVI-GTATTEAGAEGIGAAF-KQAGLEGRG 81
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHF 236
             LN+    +V    E   K+F +LN+LV NAG+    L     +D ++     N  A F
Sbjct: 82  AVLNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVF 141
Query: 237 YLTLQLENALIK 248
            L+  +   ++K
Sbjct: 142 RLSRAVLRPMMK 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	2e-49
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	7e-13
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	6e-42
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	4e-32
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	4e-30
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	1e-29
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	4e-21
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	5e-21
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	3e-10
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	7e-21
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	3e-07
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	8e-04
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	3e-20
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	3e-06
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	3e-20
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	5e-20
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	4e-06
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	6e-20
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	8e-20
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	1e-19
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	4e-06
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	1e-19
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	1e-19
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	2e-19
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	2e-19
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	2e-06
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	2e-19
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	6e-05
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	3e-19
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	2e-05
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	3e-19
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	2e-06
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	3e-19
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	4e-19
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	4e-19
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	5e-19
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	5e-19
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	6e-19
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	6e-19
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	6e-19
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	8e-19
3imf_A	257	Short chain dehydrogenase; structural genomics, in	1e-18
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	1e-18
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	1e-18
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	1e-18
1xhl_A	297	Short-chain dehydrogenase/reductase family member	1e-18
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	2e-18
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	2e-05
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	2e-18
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	5e-05
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	2e-18
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	2e-18
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	2e-18
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	3e-18
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	3e-18
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	2e-05
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	3e-18
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	4e-18
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	2e-04
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	5e-18
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	5e-18
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	5e-18
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	5e-18
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	2e-04
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	5e-18
1ymz_A	43	CC45; artificial protein, computational design, un	6e-18
1ymz_A	43	CC45; artificial protein, computational design, un	2e-05
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	7e-18
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	8e-18
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng	9e-18
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng	8e-06
3cxt_A	291	Dehydrogenase with different specificities; rossma	1e-17
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	1e-17
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	1e-17
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	5e-06
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	2e-17
3rih_A	293	Short chain dehydrogenase or reductase; structural	2e-17
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	2e-17
1spx_A	278	Short-chain reductase family member (5L265); paral	2e-17
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	3e-17
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	3e-17
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	2e-05
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	3e-17
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	9e-07
1xkq_A	280	Short-chain reductase family member (5D234); parra	3e-17
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	3e-17
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	4e-17
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	1e-07
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	5e-17
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	5e-17
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	6e-17
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	6e-17
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	7e-17
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	8e-17
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	9e-17
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	1e-16
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	1e-16
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	3e-09
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	2e-16
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	2e-16
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	2e-16
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	2e-16
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	3e-16
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	3e-16
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	3e-16
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	3e-16
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	3e-16
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	3e-16
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	3e-16
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	4e-16
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	4e-16
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	5e-06
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	4e-16
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	7e-06
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	4e-16
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	4e-16
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	6e-07
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	4e-16
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	5e-16
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	5e-16
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	5e-16
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	6e-16
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	6e-16
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	6e-16
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	7e-16
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	7e-16
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	8e-16
1xq1_A	266	Putative tropinone reducatse; structural genomics,	1e-15
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	1e-15
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	1e-15
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	1e-15
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	1e-15
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	1e-15
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	1e-15
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	1e-15
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	2e-15
2jxw_A	75	WW domain-binding protein 4; WW domain containing	2e-15
2jxw_A	75	WW domain-binding protein 4; WW domain containing	7e-05
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	2e-15
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	2e-15
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	2e-15
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	2e-15
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	3e-15
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	3e-15
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	3e-15
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	4e-15
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	4e-15
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	4e-15
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	4e-15
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	5e-15
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	6e-15
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	6e-15
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	7e-15
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	7e-15
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	8e-15
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	8e-15
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	8e-15
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	8e-15
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	9e-15
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	1e-14
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	1e-14
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	1e-14
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	1e-14
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	1e-14
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	1e-14
4dqx_A	277	Probable oxidoreductase protein; structural genomi	2e-14
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	2e-14
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	2e-14
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	3e-14
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	3e-14
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	4e-13
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	3e-14
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	3e-14
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	3e-14
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	3e-14
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	3e-14
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	3e-14
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	4e-14
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	4e-14
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	4e-14
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	5e-14
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	6e-14
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	6e-14
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	6e-14
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	7e-14
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	7e-14
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	7e-14
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	7e-14
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	8e-14
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	8e-14
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	9e-14
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	1e-13
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	1e-13
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	1e-13
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	1e-13
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	2e-13
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	2e-13
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	2e-13
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	2e-13
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	3e-13
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	3e-13
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	3e-13
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	3e-13
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	3e-13
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	3e-13
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	4e-04
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	4e-13
4e4y_A	244	Short chain dehydrogenase family protein; structur	5e-13
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	5e-13
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	5e-13
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	7e-13
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	1e-12
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	1e-12
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	1e-12
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	1e-12
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	1e-12
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	3e-12
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	7e-12
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	1e-11
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	1e-11
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	2e-11
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	2e-11
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	2e-11
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	3e-11
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	5e-11
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	9e-11
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	1e-10
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	1e-10
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	2e-10
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-10
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	6e-10
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	9e-10
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	2e-09
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	4e-09
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	5e-09
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	7e-09
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	1e-08
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	1e-08
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	1e-08
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	1e-08
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	2e-08
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	2e-08
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	2e-08
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	4e-07
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	8e-07
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	1e-05
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	2e-05
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	2e-05
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	3e-04
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	3e-05
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	6e-05
2ysi_A	40	Transcription elongation regulator 1; Ca150, FBP28	6e-05
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	3e-04
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	3e-04
1ywi_A	41	Formin-binding protein 3; WW domain, class II, pro	4e-04
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	8e-04

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291

 Score =  165 bits (421), Expect = 2e-49
 Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 9/127 (7%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             +    ++TGAN+G+G  TAR LA  G  VI+A R   K   A   +     + Q    
Sbjct: 13  SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVR 67

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
           EL+L  L SV++FA+         ++L+ NAG+  + ++ T DGFE+    NHL HF LT
Sbjct: 68  ELDLQDLSSVRRFADG----VSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALT 123

Query: 240 LQLENAL 246
             L   L
Sbjct: 124 NLLLPRL 130

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291

 Score = 66.9 bits (164), Expect = 7e-13
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 250 AKLFAR--QQGAATSIYCATSLDLS---LPVSGSYFNNCCRCPPSKAAQDEALATKLWKL 304
            ++ A     GA  ++Y A+        +     Y         S+ A+D  +A  LW L
Sbjct: 221 TRVVATDADFGARQTLYAASQDLPGDSFVGPRFGYLGRTQPVGRSRRAKDAGMAAALWAL 280

Query: 305 SEEM 308
           SE++
Sbjct: 281 SEQL 284

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276

 Score =  145 bits (369), Expect = 6e-42
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 5/128 (3%)

Query: 126 AIVTGANTGIGFETARSLA-LHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTG N GIG    R L  L    V+L  R + +   A+ ++  E  S +    +L++ 
Sbjct: 7   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRF--HQLDID 64

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYLTLQL 242
            L+S++   +  +K++  L++LV NAG+       T      E T + N      +  +L
Sbjct: 65  DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTEL 124

Query: 243 ENALIKGA 250
              +    
Sbjct: 125 LPLIKPQG 132

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score =  114 bits (287), Expect = 4e-32
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 9  PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVS-----GDLPLGWE 63
          P   S  +LP G+E+R T  G VY+++  T  + W  PR             G LP GWE
Sbjct: 2  PLGGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWE 61

Query: 64 KSVSEDGKITFYNKDTHVKTYTDPRI 89
             +  G++ F + +     +TDPR+
Sbjct: 62 IRNTATGRVYFVDHNNRTTQFTDPRL 87

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311

 Score =  115 bits (290), Expect = 4e-30
 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 34/159 (21%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC- 184
           A+VTG N GIGFE  + L+ +G  V+L CR + K ++A+ K L        +  +L++  
Sbjct: 15  AVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEK-LKNSNHENVVFHQLDVTD 73

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH------------------------- 219
            + ++   A+  +  F  L+ILV NAGV G                              
Sbjct: 74  PIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPE 133

Query: 220 -------TEDGFETTFQVNHLAHFYLTLQLENALIKGAK 251
                  T +  E   ++N+     +T  L   L     
Sbjct: 134 AQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDS 172

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88

 Score =  107 bits (269), Expect = 1e-29
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 9  PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKV---SGDLPLGWEKS 65
             D+   LP GWE+++ +D  VY+VNH    TQW  PRT  ++      G LP GWE  
Sbjct: 5  FHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIR 64

Query: 66 VSEDGKITFYNKDTHVKTYTDPR 88
           +  G+  F + +T   T+ DPR
Sbjct: 65 YTAAGERFFVDHNTRRTTFEDPR 87

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263

 Score = 89.9 bits (224), Expect = 4e-21
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            +S   A++TG+++GIG   A   A  G  ++L  R +D+ ++A   +  EK   + + +
Sbjct: 4   GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSL-KEKFGVRVLEV 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
            +++   + V    E  +  F   +ILV NAG           ++ ++  +++  +A   
Sbjct: 63  AVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVR 122

Query: 238 LT 239
           L 
Sbjct: 123 LA 124

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75

 Score = 84.6 bits (209), Expect = 5e-21
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 20 GWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDT 79
           W+E   A G +YY N  T+ + W  P+  + ++       GW+ + + DGK+ +YN  T
Sbjct: 3  IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTT 62

Query: 80 HVKTYTDPRIV 90
             ++T P   
Sbjct: 63 RETSWTIPAFE 73

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75

 Score = 54.9 bits (132), Expect = 3e-10
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 7  ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
           L   +       GW+   TADG VYY N  T  T WT P 
Sbjct: 31 ELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPA 71

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 84.7 bits (209), Expect = 7e-21
 Identities = 20/89 (22%), Positives = 32/89 (35%)

Query: 9  PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSE 68
            + +       W E  + DG  YY N  T+ + W  P               W++  S+
Sbjct: 4  VAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSD 63

Query: 69 DGKITFYNKDTHVKTYTDPRIVFAKEEKE 97
           GK  +YN  T    +  P+ +   E  E
Sbjct: 64 SGKTYYYNSQTKESRWAKPKELEDLEGLE 92

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 7  ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
           L     +      W+E  +  G  YY N  T+ ++W  P+
Sbjct: 43 DLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPK 83

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 11/56 (19%), Positives = 22/56 (39%)

Query: 55  SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHST 110
           +      W +  S DG+  +YN +T   T+  P  +    E+       ++Y   +
Sbjct: 9   ASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDS 64

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50

 Score = 81.5 bits (202), Expect = 3e-20
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 7  ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSG 56
          +  DS+    LPPGWEER   DG V+++NH  + TQW  PR      ++G
Sbjct: 2  SPVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ-NVAITG 50

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          G LP GWE+    DG++ F N +     + DPR+
Sbjct: 10 GPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265

 Score = 87.2 bits (217), Expect = 3e-20
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS   A+VTG ++GIG  T   L   G  V    R  ++   A S +    P A+  A 
Sbjct: 5   DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFAS 64

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
             ++     V+ FAE  ++     +ILV NAG          T++ +    Q+   +  +
Sbjct: 65  VCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIH 124

Query: 238 LT 239
             
Sbjct: 125 PV 126

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 80.7 bits (200), Expect = 5e-20
 Identities = 18/39 (46%), Positives = 21/39 (53%)

Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
          S     LP GWE R T DG  Y+V+H    T +  PRTG
Sbjct: 2  SSGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTG 40

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 42.2 bits (100), Expect = 4e-06
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
          S  LP GWE   + DG   F + +    TY DPR
Sbjct: 5  SSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276

 Score = 86.9 bits (216), Expect = 6e-20
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L+   A+VTG + GIG   A+ L   G RV +  R  +   D  +++        C A+
Sbjct: 26  SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRL---SAYGDCQAI 82

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
             +L      ++ A+   +    L+ILV NAG        S+   G+E   Q+N  + F 
Sbjct: 83  PADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFS 142

Query: 238 LTLQLENALIKGA 250
              QL   L + A
Sbjct: 143 CIQQLLPLLRRSA 155

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267

 Score = 86.5 bits (215), Expect = 8e-20
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A+VTG+  GIG   A SL   G  V++  R  +  N+ I +I  + P A    +
Sbjct: 7   QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPV 66

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
             +L   +  +   E+    +  ++IL+ N G+F     F   ++ +   F+VN ++   
Sbjct: 67  VADLGTEQGCQDVIEK----YPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVR 122

Query: 238 LT 239
           LT
Sbjct: 123 LT 124

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 9  PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGV 50
          P    +  LP GWE R   +G  ++++H T+ T W  PR  +
Sbjct: 5  PSEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKI 46

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          G LP GWE   + +G+  F + +T   T+ DPR+
Sbjct: 11 GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260

 Score = 85.7 bits (213), Expect = 1e-19
 Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            +    A+VT  ++G+GF +A  LA +G R++L  R+ +K   A S+I +    AQ   +
Sbjct: 4   GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIV 63

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
             ++     + +  E+  +     +ILV + G    G       + ++ ++++   +  +
Sbjct: 64  AGDIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVW 122

Query: 238 LT 239
           + 
Sbjct: 123 VG 124

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           + ++    ++TGA  GIG  TA   A    +++L   +     +  +K   +   A+   
Sbjct: 27  KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC--KGLGAKVHT 84

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
             ++    + +   A++ + +   ++ILV NAGV      F+  +   E TF+VN LAHF
Sbjct: 85  FVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 144

Query: 237 YLT 239
           + T
Sbjct: 145 WTT 147

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252

 Score = 84.9 bits (211), Expect = 2e-19
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAM 179
           L++   +VTGA+ GIG E A + A +G  VIL  R+ +K     S I  E     Q   +
Sbjct: 10  LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFIL 69

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVNHLAHF 236
           +L  C  ++ ++ A+     +  L+ ++ NAG+ G            ++   QVN  A F
Sbjct: 70  DLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATF 129

Query: 237 YLT 239
            LT
Sbjct: 130 MLT 132

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57

 Score = 79.4 bits (196), Expect = 2e-19
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 3  ANNVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKK 53
           ++ +    D+   LP  WE   T +G VY+++H T+ T W  PR   K++
Sbjct: 1  GSSGSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQ 51

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENP 99
          G LP  WE + +E+G++ F + +T   ++ DPR +  ++   + 
Sbjct: 13 GPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQSGPSS 56

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46

 Score = 79.3 bits (196), Expect = 2e-19
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 9  PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
            S  E+ LPP W  +V  +G  ++++HA+  T W  PR G
Sbjct: 3  LGSGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG 43

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46

 Score = 39.2 bits (92), Expect = 6e-05
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
            LP  W   V+ +G+  F +  +   T+ DPR
Sbjct: 9  EPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPR 41

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46

 Score = 78.8 bits (195), Expect = 3e-19
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKV 54
          +   +  LP GWE   T+ G  Y+ NH  + T W  PR  +  ++
Sbjct: 2  EIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQM 46

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKE 94
            LP GWE + +  G+  F N      T+ DPR     +
Sbjct: 7  VPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46

 Score = 78.9 bits (195), Expect = 3e-19
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 7  ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVK 51
          +   S +   LP GWE+ +T +G +YY+NH  + T W  PR   +
Sbjct: 2  SPNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLETR 46

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          SG LP GWE++++ +G+I + N      ++ DPR+
Sbjct: 9  SGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250

 Score = 84.2 bits (209), Expect = 3e-19
 Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 22/164 (13%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIA 178
           +     AI+TGA+ GIG   A  LA  G RV+L  RS         +I+   K   + I 
Sbjct: 4   EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIV 63

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFY 237
           + L++          ++  +K+ +++ILV  A +F  G  S   D F    ++N +A + 
Sbjct: 64  LPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYG 123

Query: 238 LTLQLENALIKGAKLFARQQG--------------AATSIYCAT 267
           +       + +   +  ++ G              A   IY +T
Sbjct: 124 IL----KTVTEI--MKVQKNGYIFNVASRAAKYGFADGGIYGST 161

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260

 Score = 84.5 bits (210), Expect = 4e-19
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           + L N  A+VT +  GIG   AR LA  G  V+++ R  +  +  ++ +  +        
Sbjct: 10  KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATL--QGEGLSVTG 67

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAH 235
              ++ + +  ++           ++ILV NA V   FG     TE+ ++    VN  A 
Sbjct: 68  TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKAT 127

Query: 236 FYLT 239
             +T
Sbjct: 128 VLMT 131

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235

 Score = 83.7 bits (208), Expect = 4e-19
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 22/157 (14%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A++TGA+ GIG   AR+LA  G  + L  RS+D+  + I+  L ++   +     L++ +
Sbjct: 5   AVITGASRGIGEAIARALARDGYALALGARSVDRL-EKIAHELMQEQGVEVFYHHLDVSK 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYLTLQLE 243
            +SV++F+++  ++F  ++++V NAG+          E+ F    +VN L  +       
Sbjct: 64  AESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTL---- 119

Query: 244 NALIKGAKLFARQQG-------------AATSIYCAT 267
            A +    L                        Y +T
Sbjct: 120 KAFLDS--LKRTGGLALVTTSDVSARLIPYGGGYVST 154

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286

 Score = 84.6 bits (210), Expect = 5e-19
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
             L     IVTGA+ GIG E A  LA  G  V++  RS +     +S  L E  +A    
Sbjct: 24  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL-ELGAASAHY 82

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
           +   +  +   ++F  +  K    L++L+LN         F         + +VN L++ 
Sbjct: 83  IAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYV 142

Query: 237 YLT 239
            LT
Sbjct: 143 VLT 145

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score = 83.4 bits (207), Expect = 5e-19
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 28/163 (17%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           +S  + IVTGA +G+G      L   G +V +  R   +       +         I + 
Sbjct: 1   MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIV 55

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYL 238
            +L   + V        +      +++  AG    G     T +      + N ++   +
Sbjct: 56  ADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILV 115

Query: 239 TLQLENALIKGAKLFARQQG--------------AATSIYCAT 267
             Q    +    +L   + G              A  S+YCA+
Sbjct: 116 AQQ---TV----RLIGERGGVLANVLSSAAQVGKANESLYCAS 151

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277

 Score = 84.2 bits (209), Expect = 6e-19
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L +  A +TG  +GIGF  A     HGC  ++A RSL +   A  K+       +C+ + 
Sbjct: 25  LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-RRCLPLS 83

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYL 238
           +++    +V    ++  K+F  ++IL+  A         + + + F+T   ++    F +
Sbjct: 84  MDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV 143

Query: 239 TLQLENALIK 248
           +  L     +
Sbjct: 144 SRVLYEKFFR 153

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255

 Score = 83.7 bits (208), Expect = 6e-19
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL+   A+VTG+  G+GF  A  LA  G RVIL         +++  +   +       +
Sbjct: 6   DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTL--TRKGYDAHGV 63

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
             ++    +++    +   +   ++IL+ NAG+           + ++     N  + F 
Sbjct: 64  AFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFL 123

Query: 238 LT 239
           ++
Sbjct: 124 VS 125

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247

 Score = 83.3 bits (207), Expect = 6e-19
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAM 179
           L     +VTGA  GIG   AR+ A HG  V+L  R+     +   +I +  +P    IA+
Sbjct: 12  LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIAL 71

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSH-TEDGFETTFQVNHLAHF 236
            L     +  ++ A   + +F  L+ L+ NA + G         ++ F     VN  A F
Sbjct: 72  NLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATF 131

Query: 237 YLT 239
            LT
Sbjct: 132 MLT 134

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255

 Score = 83.4 bits (207), Expect = 8e-19
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 13/156 (8%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           +     AIV G   G+G  T R L   G  V+L  R+         +        +  A+
Sbjct: 5   NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHAL 59

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
             ++  L  +        +   ++++L +NAGV         +E  ++  F VN    F+
Sbjct: 60  RSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFF 119

Query: 238 LTLQLENALIKGAKL-----FARQQG-AATSIYCAT 267
              +L   + +G  +      A + G    S+Y A+
Sbjct: 120 TVQRLTPLIREGGSIVFTSSVADEGGHPGMSVYSAS 155

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257

 Score = 82.9 bits (206), Expect = 1e-18
 Identities = 28/130 (21%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           +     I+TG ++G+G   A   A  G RV++  R+ +K  +A  +I  E+   Q + ++
Sbjct: 4   MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEI--EQFPGQILTVQ 61

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYL 238
           +++     ++K  E+  +KF  ++IL+ NA    +  +   + +G+ +   +     FY 
Sbjct: 62  MDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYC 121

Query: 239 TLQLENALIK 248
           +  +    I+
Sbjct: 122 SQAIGKYWIE 131

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302

 Score = 83.8 bits (208), Expect = 1e-18
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
                 A +TG  TG+G      L+  G + ++A R +D       +I + +   +  A+
Sbjct: 23  SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI-SSQTGNKVHAI 81

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
           + ++     V+    E  K     NI++ NA           + + ++T   +      +
Sbjct: 82  QCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAF 141

Query: 238 LTLQLENALIK 248
           +TL++   LIK
Sbjct: 142 VTLEIGKQLIK 152

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 43/184 (23%), Positives = 70/184 (38%), Gaps = 20/184 (10%)

Query: 122 SNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIAM 179
           S  + +VTGAN GIG    + L        +I   R ++KA +     L     ++   +
Sbjct: 2   SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-----LKSIKDSRVHVL 56

Query: 180 ELNLCRLKSVKKFAEEYQKKF--RSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLA 234
            L +   KS+  F  +  +      L++L+ NAGV   +G               VN  +
Sbjct: 57  PLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTS 116

Query: 235 HFYLTLQLENALIKGAKLFARQQGAATS--IYCATSL--DLSLPVSGSYFNNCC--RCPP 288
              LT +L   L   A   +  Q + +   +   +S    ++   SGS        R   
Sbjct: 117 VVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRM-- 174

Query: 289 SKAA 292
           SKAA
Sbjct: 175 SKAA 178

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267

 Score = 82.9 bits (206), Expect = 1e-18
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL    A+VTG + G+GF  A+ LA  GC V++A R+L++A++A  K+  EK   + +A 
Sbjct: 18  DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT-EKYGVETMAF 76

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
             ++   + VKK  E  ++KF  L+ +V  AG+           D F    +VN    +Y
Sbjct: 77  RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYY 136

Query: 238 LT 239
           + 
Sbjct: 137 VC 138

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297

 Score = 83.4 bits (207), Expect = 1e-18
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 14/153 (9%)

Query: 92  AKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVI 151
           +     +   +  +  H  +          S  + I+TG++ GIG   A   A  G +V 
Sbjct: 4   SHHHHHHSSGLVPRGSHMAR---------FSGKSVIITGSSNGIGRSAAVIFAKEGAQVT 54

Query: 152 LACRSLDKANDAISKILTEKPSAQ-CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNA 210
           +  R+ D+  +   +IL     A+   A+  ++               KF  ++ILV NA
Sbjct: 55  ITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNA 114

Query: 211 GV----FGLGFSHTEDGFETTFQVNHLAHFYLT 239
           G              + ++ TF++N  A   +T
Sbjct: 115 GANLADGTANTDQPVELYQKTFKLNFQAVIEMT 147

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53

 Score = 77.0 bits (190), Expect = 2e-18
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
            +E  LPPGWE R TA G  ++V+H T  T +  PR G
Sbjct: 13 LINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG 51

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
          G LP GWE   +  G+  F + +T   T+ DPR
Sbjct: 17 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 49

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43

 Score = 76.5 bits (189), Expect = 2e-18
 Identities = 18/37 (48%), Positives = 21/37 (56%)

Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          S     LPPGWE+RV   G VYYV+H  + T W  P 
Sbjct: 2  SSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPS 38

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
          S  LP GWE+ V + G++ + +      T+  P 
Sbjct: 5  SSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPS 38

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    AI+TGA  GIG E A + A  G  V+++  + D AN  + +I  ++   Q  A 
Sbjct: 8   RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI--QQLGGQAFAC 65

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYL 238
             ++   + +   A+    K   ++ILV NAG  G   F      F   +++N  + F+L
Sbjct: 66  RCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHL 125

Query: 239 T 239
           +
Sbjct: 126 S 126

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL   + +VTG   GIG   A   A  G  V +A RS    +  ++ +  +  S + I +
Sbjct: 7   DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLD-QLGSGKVIGV 65

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
           + ++         A    ++F  ++++  NAGVF      + T +     F VN    FY
Sbjct: 66  QTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFY 125

Query: 238 LT 239
             
Sbjct: 126 AV 127

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 24/163 (14%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           + +   ++TGA+ GIG   AR L + G +++L  R   +     ++I         +A  
Sbjct: 2   VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEI--RDAGGTALAQV 59

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYL 238
           L++    SV  FA+     +  +++LV NAGV  L        D +E    VN     + 
Sbjct: 60  LDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWG 119

Query: 239 TLQLENALIKGAKLFARQQG--------AAT------SIYCAT 267
                 A++    + A++ G         A       ++YCAT
Sbjct: 120 I----GAVLPI--MEAQRSGQIINIGSIGALSVVPTAAVYCAT 156

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248

 Score = 81.8 bits (203), Expect = 3e-18
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 30/160 (18%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +VTGA  G G    R     G +VI   R  ++  +     L ++        +L++  
Sbjct: 3   VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE-----LKDELGDNLYIAQLDVRN 57

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG----FETTFQVNHLAHFYLTLQ 241
             ++++       ++ +++ILV NAG+  LG           +ET    N+    Y+T  
Sbjct: 58  RAAIEEMLASLPAEWCNIDILVNNAGL-ALGMEPAHKASVEDWETMIDTNNKGLVYMT-- 114

Query: 242 LENALIKGAKLFARQQG--------AAT------SIYCAT 267
              A++ G  +  R  G        A +      ++Y AT
Sbjct: 115 --RAVLPG--MVERNHGHIINIGSTAGSWPYAGGNVYGAT 150

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 60

 Score = 76.5 bits (188), Expect = 3e-18
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 5  NVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKK 53
          +      DSE ELP GWE+       +YYV+H    TQ+ +P    K+K
Sbjct: 2  SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRK 50

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 60

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 9/63 (14%)

Query: 38  TEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKE 97
           +  +               +LP GWEK       I + +       Y +P +   ++++ 
Sbjct: 3   SGSSGLDSE---------LELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKKQL 53

Query: 98  NPL 100
              
Sbjct: 54  ESG 56

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273

 Score = 82.2 bits (204), Expect = 3e-18
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 13/155 (8%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L+   A++TGA +GIG   A+     G RV +  R  D  + AI++I         + ++
Sbjct: 27  LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQ 81

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
            +   L  + +  E+ + +   +++L +NAG   +      TE+ ++ TF  N     + 
Sbjct: 82  ADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFT 141

Query: 239 TLQLENALIKGAK------LFARQQGAATSIYCAT 267
             +    L +G+               A S+Y A+
Sbjct: 142 VQKALPLLARGSSVVLTGSTAGSTGTPAFSVYAAS 176

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49

 Score = 75.9 bits (187), Expect = 4e-18
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 7  ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
          +   S  +  LPPGW    T  G  YY++H T  T W+HP   
Sbjct: 2  SSGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES 44

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
            LP GW    +  G+  + + +T+   ++ P 
Sbjct: 10 LPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPL 42

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254

 Score = 81.2 bits (201), Expect = 5e-18
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 8/122 (6%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL+N N I   A  GIG +T+R L     +  +    ++    A++++    P       
Sbjct: 2   DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT-ALAELKAINPKVNITFH 60

Query: 180 ELNLCR-LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYL 238
             ++   +   KK  ++   + ++++IL+  AG+        +   E T  +N       
Sbjct: 61  TYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNT 114

Query: 239 TL 240
           T 
Sbjct: 115 TT 116

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266

 Score = 81.4 bits (202), Expect = 5e-18
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A++TGA  GIG + AR+ A  G R++L+ R + + + A   +  E+       +
Sbjct: 17  RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRAL-GEQFGTDVHTV 75

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
            ++L    +  + A    + F  L++LV NAG+             F+ T  VN  A   
Sbjct: 76  AIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPAL 135

Query: 238 LT 239
           L 
Sbjct: 136 LA 137

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262

 Score = 81.5 bits (202), Expect = 5e-18
 Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 5/139 (3%)

Query: 104 QKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA 163
             +          H   LS   A+VTGA+ GIG   AR L   G RV+L  R ++K    
Sbjct: 10  HHHSSGHIDDDDKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAV 69

Query: 164 ISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHT 220
             +I       +  +   +L    ++  FA          ++LV NAGV    G   +  
Sbjct: 70  EREI--VAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMK 127

Query: 221 EDGFETTFQVNHLAHFYLT 239
              ++    VN  A + L 
Sbjct: 128 PAEWDALIAVNLKAPYLLL 146

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Length = 49

 Score = 75.5 bits (186), Expect = 5e-18
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 5  NVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
          +      DSE ELP GWE+       +YYV+H    TQ+ +P  
Sbjct: 2  SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Length = 49

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 9/53 (16%)

Query: 37 ATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          ++  +               +LP GWEK       I + +       Y +P  
Sbjct: 2  SSGSSGLDSE---------LELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247

 Score = 81.0 bits (201), Expect = 5e-18
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 11/157 (7%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A++TGA++GIG  TAR+LA  G  V +A R ++K      ++      A+   +
Sbjct: 4   ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDEL--TAAGAKVHVL 61

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFY 237
           EL++   + V        +    L+ILV NAG+  LG         +      N L   Y
Sbjct: 62  ELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMY 121

Query: 238 LTLQLENALIKGAKLF-------ARQQGAATSIYCAT 267
           +T      L++             R      ++Y AT
Sbjct: 122 MTRAALPHLLRSKGTVVQMSSIAGRVNVRNAAVYQAT 158

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 75.3 bits (186), Expect = 6e-18
 Identities = 16/38 (42%), Positives = 17/38 (44%)

Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
                 LPPGWE R   +G VYY N  T  T W  P 
Sbjct: 2  SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPT 39

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVF 91
          S  LP GWE+    +GK+ ++N  T   T+  P I+ 
Sbjct: 6  SMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTIIL 42

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319

 Score = 81.7 bits (202), Expect = 7e-18
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 16/165 (9%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           +D +   A VTG   G+G    R L   GC+V +A    D  + A++ +  E    + + 
Sbjct: 4   KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVN----- 231
           ++L++   +  K  A+E + +F  ++IL  NAGV         + D ++    VN     
Sbjct: 64  VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVV 123

Query: 232 H---------LAHFYLTLQLENALIKGAKLFARQQGAATSIYCAT 267
           +         +       Q    ++  A + A     +  IY  T
Sbjct: 124 NGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTT 168

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303

 Score = 81.6 bits (202), Expect = 8e-18
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA---ISKILTEKPSAQCI 177
           L    AIVTG  TGIG    + L   G  V++A R L++   A   +   L     A+ I
Sbjct: 16  LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAH 235
            ++ N+   + V    +     F  +N LV N G          +  G+    + N    
Sbjct: 76  PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGT 135

Query: 236 FYLTLQLENALIK 248
           FY+   + ++ +K
Sbjct: 136 FYMCKAVYSSWMK 148

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41

 Score = 74.5 bits (184), Expect = 9e-18
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
             +  LPPGWE R+  +G  ++++H T+ T W  PR 
Sbjct: 3  PGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41

 Score = 41.4 bits (98), Expect = 8e-06
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 54 VSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          +   LP GWE  ++ +G+  F + +T   T+ DPR+
Sbjct: 5  IQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272

 Score = 80.3 bits (199), Expect = 1e-17
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 29/167 (17%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
              +    +TGA +G G   AR  A  G  ++L  R  ++   A++  L+ K   + + +
Sbjct: 18  SHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERL-QALAGELSAK--TRVLPL 74

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG----FETTFQVNHLAH 235
            L++    ++    +   ++F +L  L+ NAG+  LG    +      ++T    N    
Sbjct: 75  TLDVRDRAAMSAAVDNLPEEFATLRGLINNAGL-ALGTDPAQSCDLDDWDTMVDTNIKGL 133

Query: 236 FYLTLQLENALIKGAKLFARQQG---------AAT------SIYCAT 267
            Y T      L+    L A   G         A         +Y  T
Sbjct: 134 LYST----RLLLPR--LIAHGAGASIVNLGSVAGKWPYPGSHVYGGT 174

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 74.2 bits (183), Expect = 1e-17
 Identities = 19/37 (51%), Positives = 22/37 (59%)

Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          S     LP GWEE  TADG  Y++NH T+ T W HP 
Sbjct: 2  SSGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 41.8 bits (99), Expect = 5e-06
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          S  LP GWE++ + DG   F N  T   ++  P +
Sbjct: 5  SSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
             +  A+VTGA+ GIG   AR+L   G +V+   R++    +  ++  +       I   
Sbjct: 30  WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYR 89

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYL 238
            +L   + +       + +   ++I + NAG+       +    G++  F VN LA    
Sbjct: 90  CDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSIC 149

Query: 239 TLQLENALIK---------------GAKLFARQQGAATSIYCAT 267
           T +   ++ +               G ++      + T  Y AT
Sbjct: 150 TREAYQSMKERNVDDGHIININSMSGHRVLP---LSVTHFYSAT 190

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS  + +VTG   GIG   A   A  G  V +A RS  +   +++  L E  +   I +
Sbjct: 38  DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPREL-SSVTAELGELGAGNVIGV 96

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
            L++    S    A      F +L+++  NAG+F      + T +       VN     Y
Sbjct: 97  RLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVY 156

Query: 238 LT 239
             
Sbjct: 157 TV 158

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 26/168 (15%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHG---CRVILACRSLDKANDAISKILTEKPSAQC 176
            L+    ++TGA+ GIG  TA           ++ILA R L+K  +    I  E P+A+ 
Sbjct: 30  RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKV 89

Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG-VFGLGFSHT--EDGFETTFQVNHL 233
              +L++ + + +K F E   ++F+ ++ILV NAG   G         +  +  F  N  
Sbjct: 90  HVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVT 149

Query: 234 AHFYLTLQLENALIKGAKLFARQQG--------AAT------SIYCAT 267
           A   +T     A++      A+  G        A        SIYCA+
Sbjct: 150 ALINIT----QAVLPI--FQAKNSGDIVNLGSIAGRDAYPTGSIYCAS 191

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAMELNLC 184
           AI+TG++ GIG  TA   A  G +V +  R  ++  +   +IL          ++  ++ 
Sbjct: 9   AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 68

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH------TEDGFETTFQVNHLAHFYL 238
                 +       KF  L+ILV NAG              + + ++ T  +N  +   L
Sbjct: 69  TDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIAL 128

Query: 239 T 239
           T
Sbjct: 129 T 129

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276

 Score = 79.5 bits (197), Expect = 3e-17
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS   A++TGA+TGIG + A + A  G +V +A R  D       +I       + + +
Sbjct: 29  DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEI--AGVGGKALPI 86

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
             ++ +   V+   ++   +   ++I V NAG+           + F+     N    F 
Sbjct: 87  RCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFL 146

Query: 238 LT 239
             
Sbjct: 147 TA 148

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 73.3 bits (181), Expect = 3e-17
 Identities = 18/34 (52%), Positives = 19/34 (55%)

Query: 14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
             LPPGWEE+V   G  YYVNH    TQW  P 
Sbjct: 2  SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 40.1 bits (95), Expect = 2e-05
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          S  LP GWE+ V   G+  + N +     +  P +
Sbjct: 2  SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38

 Score = 73.4 bits (181), Expect = 3e-17
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
            E  LP GWE+ +T DG +YY+NH  + T W  PR
Sbjct: 2  AMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38

 Score = 44.1 bits (105), Expect = 9e-07
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 54 VSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          + G LP GWE+++++DG+I + N      ++ DPR+
Sbjct: 3  MEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIA 178
             SN   I+TG++ GIG  TA   A  G  V +  RS ++  +    IL       Q  +
Sbjct: 3   RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNS 62

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF------SHTEDGFETTFQVNH 232
           +  ++       +      K+F  +++LV NAG                D +  T ++N 
Sbjct: 63  VVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNL 122

Query: 233 LAHFYLT 239
            A   +T
Sbjct: 123 QAVIEMT 129

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260

 Score = 79.1 bits (196), Expect = 3e-17
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           +L    A+VTG + GIG+     LA  G  V    R+  + ND +++        +  A 
Sbjct: 6   NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW--RSKGFKVEAS 63

Query: 180 ELNLCRLKSVKKFAEEYQKKFR-SLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
             +L      ++        F   LNILV NAG+  +     +T + +     +N  A +
Sbjct: 64  VCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAY 123

Query: 237 YLT 239
           +L+
Sbjct: 124 HLS 126

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42

 Score = 72.7 bits (179), Expect = 4e-17
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
              LPPGWE R TA G VY+V+H    TQ+T PR
Sbjct: 4  GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 38

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          SG LP GWE   +  G++ F + +     +TDPR+
Sbjct: 5  SGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 8/149 (5%)

Query: 104 QKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA 163
             +    + L       LS+   ++TGA+  +G   A  L  HG RVI++ R+   +   
Sbjct: 8   HHHSSGRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTE 67

Query: 164 ISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTED 222
           + +       A  +A+  +      +  F +  + +  SL  +V NA  +         D
Sbjct: 68  LRQ-------AGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEAD 120

Query: 223 GFETTFQVNHLAHFYLTLQLENALIKGAK 251
            F   F V+ LA + + L  E  L     
Sbjct: 121 NFTRMFSVHMLAPYLINLHCEPLLTASEV 149

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256

 Score = 78.3 bits (194), Expect = 5e-17
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L++  AIVTGA  GIG   A + A  G  V++     + A    + I   +   + I +
Sbjct: 9   HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAI--RQAGGKAIGL 66

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYL 238
           E N+   +  +   +    +F  + +LV NAG  G   F      FE  F++N  + F L
Sbjct: 67  ECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRL 126

Query: 239 T 239
           +
Sbjct: 127 S 127

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273

 Score = 78.3 bits (194), Expect = 6e-17
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A+VTG + GIG+     LA  G RV    R+  + ++ +      +        
Sbjct: 18  SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW--REKGLNVEGS 75

Query: 180 ELNLCRLKSVKKFAEEYQKKFR-SLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
             +L       K  +     F   LNILV NAGV         TE  +      N  A +
Sbjct: 76  VCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAY 135

Query: 237 YLT 239
           +L+
Sbjct: 136 HLS 138

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259

 Score = 78.2 bits (193), Expect = 6e-17
 Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 22/172 (12%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLA---LHGCRVILACRSLDKANDAISKILTEKPSA 174
              L     ++TGA+ G G   A  LA     G  ++++ RS         ++  ++P  
Sbjct: 1   ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL 60

Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFR----SLNILVLNAGVFGLGFSH-----TEDGFE 225
           + +    +L     V++     ++  R       +L+ NA   G                
Sbjct: 61  KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVN 120

Query: 226 TTFQVNHLAHFYLTLQLENALIKGAKLF----------ARQQGAATSIYCAT 267
             + +N  +   LT    NA      L           A Q      +YCA 
Sbjct: 121 NYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAG 172

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301

 Score = 78.6 bits (194), Expect = 7e-17
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
                  A+VTG  +GIG  TA   A  G R++L+         A++ +           
Sbjct: 27  SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGL--RGQGFDAHG 84

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHF 236
           +  ++  L  + + A+E  +    ++++  NAG+   G       D +     ++     
Sbjct: 85  VVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSI 144

Query: 237 YLTLQLENALIKGAKLFARQ 256
           +             + F  +
Sbjct: 145 H-----------AVEAFLPR 153

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263

 Score = 78.0 bits (193), Expect = 8e-17
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS   AIVTG + GIG   AR+L   G  V +A   +  A   ++ +          A+
Sbjct: 9   DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-----ENGGFAV 63

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
           E+++ +  SV    ++        ++L  NAGV         T++ ++  F VN    F 
Sbjct: 64  EVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFL 123

Query: 238 LT 239
             
Sbjct: 124 AN 125

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244

 Score = 77.1 bits (191), Expect = 9e-17
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           + S   A+VTGA  GIG +T ++L   G +V+   R+         +            +
Sbjct: 4   NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPV 57

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
            ++L    + +K           +++LV NA +  +      T++ F+ +F VN  + F 
Sbjct: 58  CVDLGDWDATEKALGGIGP----VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQ 113

Query: 238 LT 239
           ++
Sbjct: 114 VS 115

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L N  AIVTG    IG     +LA  G RVI+A      A  A+  +          ++
Sbjct: 10  RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDL--RMEGHDVSSV 67

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVN 231
            +++   +SV+       ++   ++ILV  AG+          T+  +     +N
Sbjct: 68  VMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDIN 122

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Length = 109

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 11  SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKK 52
           +D+  ELP GWE +    G  ++V+H +  T +  PR  ++ 
Sbjct: 67  ADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPLQN 108

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Length = 109

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 14/72 (19%)

Query: 18  PPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNK 77
              +E        V ++N   +                 +LP GWE    + GK  F + 
Sbjct: 47  ARNFERYQHNRDLVNFINMFADT--------------RLELPRGWEIKTDQQGKSFFVDH 92

Query: 78  DTHVKTYTDPRI 89
           ++   T+ DPRI
Sbjct: 93  NSRATTFIDPRI 104

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 4/142 (2%)

Query: 100 LDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK 159
           +     + H +  L            A VTG ++GIG   AR+LA  G  V    R    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKN 60

Query: 160 ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGF 217
            + A+  +              ++     V        ++F  + ILV +AG    G   
Sbjct: 61  VSAAVDGL--RAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETA 118

Query: 218 SHTEDGFETTFQVNHLAHFYLT 239
              +  +      N    F +T
Sbjct: 119 DLDDALWADVLDTNLTGVFRVT 140

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    ++VTG+  GIG   A  LA  G  VI+   S ++A  A+++ +  K   +   +
Sbjct: 4   KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERA-KAVAEEIANKYGVKAHGV 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           E+NL   +S+ K  EE       ++ILV NAG+
Sbjct: 63  EMNLLSEESINKAFEEIYNLVDGIDILVNNAGI 95

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            LS    +VTGA +GIG       A  G  ++   R      +A++ +      A+ IA+
Sbjct: 3   RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAV 57

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
             ++   K+V+    E  ++F  L+ +   AGV    L ++   + +E   +VN    F 
Sbjct: 58  VADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFL 117

Query: 238 LT 239
           + 
Sbjct: 118 VA 119

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
             ++   A+VTGA  GIG   A +L L G +V L   +L+      + +  +    + + 
Sbjct: 3   HMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLF 62

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVN 231
           ++ ++   + ++    +    F  L+ILV NAGV        E  +E T Q+N
Sbjct: 63  IQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQIN 109

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 10/119 (8%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVIL--ACRSLDKANDAISKILTEKPSAQCIAMELNL 183
            +VTG + GIG      L       ++    RS           L EK   +   +  ++
Sbjct: 5   ILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKK-----LKEKYGDRFFYVVGDI 59

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAHFYLT 239
                +K+      K    ++ LV NAGV            + ++  + +N  +   L 
Sbjct: 60  TEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLV 118

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264

 Score = 76.4 bits (189), Expect = 3e-16
 Identities = 17/117 (14%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +++G    +G   AR  A  G  ++LA R++++  D   ++       + +++  ++  
Sbjct: 14  VVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQV--TDTGRRALSVGTDITD 71

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAHFYLT 239
              V    +E  K +  +++++ NA          + T +      ++       L 
Sbjct: 72  DAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLI 128

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256

 Score = 76.4 bits (189), Expect = 3e-16
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA  GIG   A  L   G  V +A  +   A    S+I   +     +A+++++  
Sbjct: 5   ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI--NQAGGHAVAVKVDVSD 62

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
              V    E+ +K     +++V NAGV       S T +  +  + +N
Sbjct: 63  RDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNIN 110

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265

 Score = 76.4 bits (189), Expect = 3e-16
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
              N   IVTG N GIG    R++A  G  V +  RS   A +   K+  ++   +  A 
Sbjct: 11  SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVG-KEFGVKTKAY 69

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
           + ++     V K  ++       ++ L+ NAGV         T + F   + VN    F 
Sbjct: 70  QCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFN 129

Query: 238 LT 239
             
Sbjct: 130 TC 131

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 2/123 (1%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           + +    A++TG+ +GIG   AR+LA  G  ++L           ++  +    S   + 
Sbjct: 21  QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLH 80

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
              ++ +   +         +F   +ILV NAGV           + ++    VN  + F
Sbjct: 81  HPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSF 140

Query: 237 YLT 239
           +  
Sbjct: 141 HTI 143

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 125 NAIVTGANTGIGFETARSLAL---HGCRVILACRSLDKANDAISKILTEKPSAQCIAMEL 181
           + ++TG N G+G    ++L         +   CR+ ++A +    +     +   +  E+
Sbjct: 23  SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNHSNIHIL--EI 79

Query: 182 NLCRLKSVKKFAEEYQKKF--RSLNILVLNAGVFGLG---FSHTEDGFETTFQVNHLAHF 236
           +L    +  K   + +     + LN+L  NAG+        +        T Q N +   
Sbjct: 80  DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI 139

Query: 237 YLTLQLENALIKGAK 251
            L       L K AK
Sbjct: 140 MLAKACLPLLKKAAK 154

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A+VTG+ +GIG   A +LA  G  ++L         + +   L  +   + +   
Sbjct: 2   LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYL 238
            +L + ++V+   +   ++   ++ILV NAG+    L      + ++    +N  A F+ 
Sbjct: 62  ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHG 121

Query: 239 T 239
           T
Sbjct: 122 T 122

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244

 Score = 75.6 bits (187), Expect = 4e-16
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L+    +VTGA  GIG  T ++L   G RV+   R+    +  + +            +
Sbjct: 4   FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPV 57

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
            ++L   ++ ++           +++LV NA V  L      T++ F+ +F+VN  A   
Sbjct: 58  CVDLGDWEATERALGSVGP----VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQ 113

Query: 238 LT 239
           ++
Sbjct: 114 VS 115

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39

 Score = 70.2 bits (173), Expect = 4e-16
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          LPPGWE RV   G +YYV+H T  T W  P 
Sbjct: 7  LPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39

 Score = 41.7 bits (99), Expect = 5e-06
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          G LP GWE+ V   G+I + +  T   T+  P +
Sbjct: 5  GPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36

 Score = 69.9 bits (172), Expect = 4e-16
 Identities = 18/34 (52%), Positives = 18/34 (52%)

Query: 14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
             LP GWEER  A G  YYVNH    T WT P 
Sbjct: 2  SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36

 Score = 41.4 bits (98), Expect = 7e-06
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          S  LP GWE+     G+  + N +    T+T P +
Sbjct: 2  SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266

 Score = 75.7 bits (187), Expect = 4e-16
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 30/166 (18%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           GR       ++TGA++GIG   AR  +  G  ++L  R +++        L        +
Sbjct: 11  GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVER--------LKALNLPNTL 62

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAH 235
             ++++    +        +K +   + +V NAG+  LG   T   + ++  F VN L  
Sbjct: 63  CAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGL 122

Query: 236 FYLTLQLENALIKGAKLFARQQG--------AAT------SIYCAT 267
                    A++    + AR  G        A        + YC T
Sbjct: 123 LNGM----QAVLAP--MKARNCGTIINISSIAGKKTFPDHAAYCGT 162

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37

 Score = 69.9 bits (172), Expect = 4e-16
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 16 ELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
           LPPGW+E  T +G  YY NH T+ + WT PR 
Sbjct: 3  GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37

 Score = 44.5 bits (106), Expect = 6e-07
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          S  LP GW++  + +GK  +YN +T   T+TDPR+
Sbjct: 1  SMGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261

 Score = 75.6 bits (187), Expect = 4e-16
 Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL     ++TG++TG+G   A   A    +V++  RS +   +++ + + +    + IA+
Sbjct: 4   DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV-GGEAIAV 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFY 237
           + ++     V    +   K+F  L++++ NAG+     SH  +   +      N    F 
Sbjct: 63  KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFL 122

Query: 238 LT 239
            +
Sbjct: 123 GS 124

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258

 Score = 75.7 bits (187), Expect = 5e-16
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL     ++TG++ GIG  TAR  A  G +V L  R      D     +           
Sbjct: 4   DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASM-RADGGDAAFF 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHF 236
             +L   ++ ++  +E+  KF  +++L+ NAG            +  ++     N  +  
Sbjct: 63  AADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVV 122

Query: 237 YLT 239
             T
Sbjct: 123 MTT 125

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247

 Score = 75.2 bits (186), Expect = 5e-16
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L+   A+VTGA+ GIGFE A +LA  G  V+    S   A    + +  ++   +   +
Sbjct: 2   SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSM--KEKGFKARGL 59

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            LN+  ++S++ F  E + +  +++ILV NAG+
Sbjct: 60  VLNISDIESIQNFFAEIKAENLAIDILVNNAGI 92

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 70.0 bits (172), Expect = 5e-16
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
          S     LPPGW+  ++  G  YYVN  T  T W  P +
Sbjct: 2  SSGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288

 Score = 75.8 bits (187), Expect = 6e-16
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 16/153 (10%)

Query: 103 RQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND 162
              + H   +  +  G  +    A+VTGA   IG   A  L   G RV++   +  +A  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAV 62

Query: 163 AISKILTEKPSAQCIAMELNLCRLK----SVKKFAEEYQKKFRSLNILVLNAGVF----- 213
           +++  L ++ S   +  + +L        S ++      + F   ++LV NA  F     
Sbjct: 63  SLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPL 122

Query: 214 -------GLGFSHTEDGFETTFQVNHLAHFYLT 239
                         E         N +A F LT
Sbjct: 123 VQGDHEDNSNGKTVETQVAELIGTNAIAPFLLT 155

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259

 Score = 75.2 bits (186), Expect = 6e-16
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           + L   +A++TG+  GIG   A +    G  V +A   +++A  A ++I          A
Sbjct: 4   KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYA 58

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
           +++++ R  S+        +    L+ILV NA +F L      T + +E  F +N
Sbjct: 59  VQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAIN 113

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L+   A+VTGA +GIG   A   A  G  V+   R+ D   +   +I          A+
Sbjct: 28  SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEI--ADGGGSAEAV 84

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
             +L  L+     AEE     R +++LV NAG+         +   +     VN  A + 
Sbjct: 85  VADLADLEGAANVAEEL-AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWV 143

Query: 238 LT 239
           L+
Sbjct: 144 LS 145

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253

 Score = 75.2 bits (186), Expect = 7e-16
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
             N   IVTG+  GIG   A +LA  G  V++A  + + A     +I         I++ 
Sbjct: 7   FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI--VADGGTAISVA 64

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF-----GLGFSHTEDGFETTFQVNHLAH 235
           +++   +S K  A+    +F  ++ LV NA +F         +   + ++    VN    
Sbjct: 65  VDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGA 124

Query: 236 FYLT 239
            + T
Sbjct: 125 LWCT 128

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234

 Score = 74.9 bits (185), Expect = 7e-16
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 28/158 (17%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            ++TGA+ GIG  TAR L   G RV L  R   +     +++         + +  ++  
Sbjct: 8   VLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVRE 61

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYLTLQLE 243
                +     ++ F  L+ LV NAGV  +   H    + +      N    F       
Sbjct: 62  EGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGI---- 117

Query: 244 NALIKGAKLFARQQG--------AAT------SIYCAT 267
              +    L  R  G        A        + Y A+
Sbjct: 118 RHAVPA--LLRRGGGTIVNVGSLAGKNPFKGGAAYNAS 153

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252

 Score = 75.0 bits (185), Expect = 8e-16
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
             V GA   IG E A+  A  G  V    R+ +K    +++I  E    + +A  L+   
Sbjct: 10  VAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEI--EAAGGRIVARSLDARN 67

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYLT 239
              V  F          L + + N G          T+  F   +++   A F   
Sbjct: 68  EDEVTAFLNA-ADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSG 122

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266

 Score = 74.8 bits (185), Expect = 1e-15
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L     +VTG   GIG       A  G  +    R+  + N+ +SK   +K   Q    
Sbjct: 11  SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW--QKKGFQVTGS 68

Query: 180 ELNLCRLKSVKKFAEEYQKKF-RSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
             +       +K  +     F   L+IL+ N G         +T + F      N  + +
Sbjct: 69  VCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAY 128

Query: 237 YLT 239
           +L+
Sbjct: 129 HLS 131

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
              +  A+VTGA +GIG E AR L   G RV +  R  +       K L E    +    
Sbjct: 19  TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGL-RTTLKELREA-GVEADGR 76

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
             ++  +  ++       +++  +++LV NAG    G      ++ +    + N    F 
Sbjct: 77  TCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFR 136

Query: 238 LT 239
           +T
Sbjct: 137 VT 138

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247

 Score = 74.4 bits (184), Expect = 1e-15
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    AIVTG++ G+G   A  L   G  ++L       + DA ++          +  
Sbjct: 2   QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA-GINVVVA 60

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           + ++   + V+   +     F  ++ILV NAG+
Sbjct: 61  KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI 93

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 117 HGRDLSNYNAIVTGA-NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQ 175
           HG  L     +VT A  TGIG  TAR   L G  V+++     +  +   ++  +    +
Sbjct: 17  HGL-LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQL-ADLGLGR 74

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
             A+  ++   ++V     +  +K   L++LV NAG+ G       T++ ++    V 
Sbjct: 75  VEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVT 132

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            ++TG  +G+G  TA  LA  G ++ L   S +    + + +L   P A+ +    ++  
Sbjct: 16  VLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD 75

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG---FSHTEDGFETTFQVN 231
              V+ +     ++F  ++    NAG+ G      S T   F+    +N
Sbjct: 76  EAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSIN 124

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260

 Score = 74.1 bits (183), Expect = 1e-15
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 13/122 (10%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
                  ++TGA+ GIG    R+      RV+   RS+  + D                +
Sbjct: 25  RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD-----------PDIHTV 73

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
             ++ + ++  +   E  ++F  ++ LV NAGVF        T++ ++    VN    F+
Sbjct: 74  AGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFH 133

Query: 238 LT 239
           +T
Sbjct: 134 IT 135

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 11/123 (8%)

Query: 126 AIVTGANTGIGFETARSLALHGCR-------VILACRSLDKANDAISKILTEKPSAQCIA 178
            ++TGA  GIG   A   A            ++L+ R+         +       A    
Sbjct: 5   LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC--RAEGALTDT 62

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
           +  ++  +  V++      +++  ++ LV NAGV  FG     TE+ F+ T   N    F
Sbjct: 63  ITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTF 122

Query: 237 YLT 239
           +LT
Sbjct: 123 FLT 125

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
              N  A+VTGA  GIG E A+ LA     VI   R+    +  + +I  +    +    
Sbjct: 41  CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI--KSFGYESSGY 98

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
             ++ + + + +   +   + ++++ILV NAG+
Sbjct: 99  AGDVSKKEEISEVINKILTEHKNVDILVNNAGI 131

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247

 Score = 74.1 bits (183), Expect = 2e-15
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L+   A+VTGA  GIG   A  LA  G  VI++  + + A  A + I       +  A+ 
Sbjct: 4   LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIA 58

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYL 238
            ++    SVK    E Q     ++ILV NA +  F        D +     VN    F +
Sbjct: 59  ADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIV 118

Query: 239 T 239
           T
Sbjct: 119 T 119

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75

 Score = 69.7 bits (170), Expect = 2e-15
 Identities = 19/73 (26%), Positives = 31/73 (42%)

Query: 15 DELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITF 74
          D     W E +T++G  YY +  +  +QW  P           +   W + +SEDG   +
Sbjct: 1  DPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYY 60

Query: 75 YNKDTHVKTYTDP 87
          YN +T    +  P
Sbjct: 61 YNTETGESRWEKP 73

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75

 Score = 39.6 bits (92), Expect = 7e-05
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 5  NVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
                   +  +   W E ++ DG  YY N  T  ++W  P
Sbjct: 32 PEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKP 73

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266

 Score = 74.1 bits (183), Expect = 2e-15
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L+   A+VTGA  GIG   AR     G  V L     DK  +  + +            
Sbjct: 24  KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVF 78

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
             NL   KS+K+ AE  +++   ++ILV NAG+
Sbjct: 79  SANLSDRKSIKQLAEVAEREMEGIDILVNNAGI 111

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           +L    A+VTGA+ GIG   A  LA  G +VI    S   A      +           M
Sbjct: 6   NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL-----GDNGKGM 60

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            LN+   +S++   +    +F  ++ILV NAG+
Sbjct: 61  ALNVTNPESIEAVLKAITDEFGGVDILVNNAGI 93

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           + L N   IVTGA +GIG   A+  AL+   V+      D+ N  + ++       + + 
Sbjct: 3   QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQEL--RGMGKEVLG 60

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVN 231
           ++ ++ + K V++F     + +  +++L  NAG+          +++ +E    VN
Sbjct: 61  VKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVN 116

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
                +A++T    G+G +    L   G  V +   S   A + + +   +    +   +
Sbjct: 4   GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDV-EERLQFV 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAH 235
           + ++ + + + K  EE    F  ++ L+ NAG +         + ED +    Q N  A 
Sbjct: 63  QADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAV 122

Query: 236 FYLT 239
           F+L 
Sbjct: 123 FHLL 126

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 10/128 (7%)

Query: 115 ILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPS 173
           +   +      A+VTG++ G+G   A  LA +G  +++   RS   A +   +I  EK  
Sbjct: 1   MEQNK-----CALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEI--EKLG 53

Query: 174 AQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 231
            + + ++ N+ +   +K+  ++  + F  L++ V NA            E  ++ T  +N
Sbjct: 54  VKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNIN 113

Query: 232 HLAHFYLT 239
             A  +  
Sbjct: 114 AKALLFCA 121

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 14/122 (11%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           D S  N  VTGA  GIG+ TA +    G +V    ++  +                    
Sbjct: 4   DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPF------------ATE 51

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
            +++     V +  +    +   L+ LV  AG+   G     +++ ++ TF VN    F 
Sbjct: 52  VMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFN 111

Query: 238 LT 239
           L 
Sbjct: 112 LF 113

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    AIVTGA+ GIG   A  LA  G  VI    +   A    +    ++   +    
Sbjct: 25  TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAF--KQAGLEGRGA 82

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            LN+    +V    E   K+F +LN+LV NAG+
Sbjct: 83  VLNVNDATAVDALVESTLKEFGALNVLVNNAGI 115

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A VTG++ GIG+  A + A  G  V +   S      A      +       A 
Sbjct: 31  SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQ--KTYGVHSKAY 88

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV----FGLGFSHTEDGFETTFQVNHLAH 235
           + N+   KSV++   + +K F ++++ V NAGV             D +     V+    
Sbjct: 89  KCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGV 148

Query: 236 FYLT 239
           +Y +
Sbjct: 149 YYCS 152

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262

 Score = 72.9 bits (180), Expect = 4e-15
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVIL---ACRSLDKANDAISKILTEKPSAQ 175
            DL N   ++ G    +G  TA++ AL    ++L     +  D AN    ++  E   A+
Sbjct: 7   HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDEL--EDQGAK 64

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHL 233
               + +L   + V K  +  +K+F  ++I +   G          +E  F+    +N+ 
Sbjct: 65  VALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNK 124

Query: 234 AHFYLT 239
             ++  
Sbjct: 125 VAYFFI 130

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249

 Score = 72.9 bits (180), Expect = 4e-15
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L +  A++TG   GIG   A   A+ G  + +A   L  A +A + I       + + ++
Sbjct: 5   LKDKLAVITGGANGIGRAIAERFAVEGADIAIA--DLVPAPEAEAAI--RNLGRRVLTVK 60

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
            ++ +   V+ F ++    F   +ILV NAG++        T + ++ TF++N
Sbjct: 61  CDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEIN 113

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272

 Score = 73.0 bits (180), Expect = 4e-15
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
                 AIVTGA +G+G   A +LA  G  V LA R LD   +  ++I         + +
Sbjct: 25  KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCV 79

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVNHLAHF 236
             ++    SV+       +KF  +++L  NAG           T   ++     N    F
Sbjct: 80  PTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPF 139

Query: 237 YLT 239
             T
Sbjct: 140 LCT 142

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274

 Score = 73.0 bits (180), Expect = 5e-15
 Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCI 177
           + L+   A+ TGA  GIG   A  L   G  V++    S   A + ++++  +K  AQ +
Sbjct: 17  KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL--KKLGAQGV 74

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAH 235
           A++ ++ +   V    ++    F  L+ ++ N+G+  +      T++ F+  F +N    
Sbjct: 75  AIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQ 134

Query: 236 FYLT 239
           F++ 
Sbjct: 135 FFVA 138

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255

 Score = 72.6 bits (179), Expect = 6e-15
 Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 17/162 (10%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAM 179
           L    A+VTGA+ GIG   A+ LA  G  V +      ++A + + +I  +       ++
Sbjct: 5   LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI--QSNGGSAFSI 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFRS------LNILVLNAGVFGLGF--SHTEDGFETTFQVN 231
             NL  L  V+        + ++       +IL+ NAG+    F    TE  F+    VN
Sbjct: 63  GANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVN 122

Query: 232 HLAHFYLTLQLENALIKGAK------LFARQQGAATSIYCAT 267
             A F++  Q  + L   ++         R        Y  T
Sbjct: 123 AKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSMT 164

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281

 Score = 72.7 bits (179), Expect = 6e-15
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
                 A+VTG  TG+G   A++L+  G  V++  R  D  + A  +I   +      A+
Sbjct: 30  SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEI-GGRTGNIVRAV 88

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
             ++     V       + +F  L++LV NAG           T + +      N
Sbjct: 89  VCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAAN 143

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258

 Score = 72.2 bits (178), Expect = 7e-15
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKILTEKPSAQCIAMELNL 183
           A+VTG   GIG   +  LA  G  + +A   +  ++A + I  I  E    + + + L++
Sbjct: 5   AMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLI--EAADQKAVFVGLDV 62

Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
               +     +E  +K    ++LV NAG+         TE+  +  + VN
Sbjct: 63  TDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVN 112

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262

 Score = 72.2 bits (178), Expect = 7e-15
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +VTGA   IG  TA  LA  G  + L   + +    A + +   +   +  +   ++  
Sbjct: 10  CLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV--REKGVEARSYVCDVTS 67

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
            ++V    +   + F  ++ L  NAG  G       +  D F     +N
Sbjct: 68  EEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTIN 116

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254

 Score = 72.2 bits (178), Expect = 8e-15
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A VTGA +GIG E  R+ A  G R+IL  R     + A  ++     +A    +
Sbjct: 8   RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG----AAVAARI 63

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
             ++   +++   A E  +    ++ILV +AG+          +  +     VN    F+
Sbjct: 64  VADVTDAEAMTAAAAEA-EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFW 122

Query: 238 LT 239
            +
Sbjct: 123 AS 124

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230

 Score = 71.8 bits (177), Expect = 8e-15
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 25/155 (16%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            ++TGA++G+G E A+     G    L  RS  K +      +T   S        +L  
Sbjct: 4   IVITGASSGLGAELAKLYDAEGKATYLTGRSESKLST-----VTNCLSNNVGYRARDLAS 58

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYLTLQLE 243
            + V++  E+        + +V +AG    G       +  +T  + N  +   +     
Sbjct: 59  HQEVEQLFEQ---LDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVL---- 111

Query: 244 NALIKG-----------AKLFARQQGAATSIYCAT 267
             L+K                A+Q  A  S YCA 
Sbjct: 112 RELVKRYKDQPVNVVMIMSTAAQQPKAQESTYCAV 146

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281

 Score = 72.6 bits (179), Expect = 8e-15
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 4/124 (3%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA-QCIA 178
              +   +VTG  +GIG   A  L   G  V++  R+ DK   A+ ++     +      
Sbjct: 8   SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRY 67

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAH 235
              ++       +  +        L+ +V  AG     G       + +  T  +N    
Sbjct: 68  EPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGT 127

Query: 236 FYLT 239
            Y+ 
Sbjct: 128 MYVL 131

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267

 Score = 72.2 bits (178), Expect = 8e-15
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAM 179
            +N  AIVTGA+ GIG   A  LA  G  V++        A +   KI  E    + +  
Sbjct: 25  ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKI--EAAGGKALTA 82

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFY 237
           + ++    +V++     ++ F  +++LV NAG+  L       +  F+    VN    F 
Sbjct: 83  QADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFN 142

Query: 238 LT 239
             
Sbjct: 143 TL 144

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           +  +  A++TGA +GIG  TA +LA  G  V    R+  +  +   +I       Q IA+
Sbjct: 25  NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEI--VGAGGQAIAL 82

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG---FSHTEDGFETTFQVN 231
           E ++     ++    +   KF  L+I+V NAG+ G+           ++ T  VN
Sbjct: 83  EADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVN 137

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251

 Score = 71.4 bits (176), Expect = 1e-14
 Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 6/116 (5%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
            R L    AI+TG   GIG   A      G +V++  R  D    A   +       Q  
Sbjct: 2   NR-LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV---GTPDQIQ 57

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
             + +        K  +  +K F  ++ LV NAG+         T   +     VN
Sbjct: 58  FFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVN 113

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS    I+TG   G+G E AR     G RV+LA    ++      ++            
Sbjct: 2   DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQ 56

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
            L++   +  ++     +++F S++ LV NAG+    F    + + F    ++N
Sbjct: 57  HLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEIN 110

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 120 DLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
            L     +VTGA+   G+G E AR  A  G  V +   S  +  +   K L +    +  
Sbjct: 17  SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAK 76

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
           A +  +   +S +K  ++    F  ++  + NAG          + + +    QV+
Sbjct: 77  AYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVD 132

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264

 Score = 71.4 bits (176), Expect = 1e-14
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKI-----LTEKPSAQ 175
           L +  A+VTGA +GIG   +  LA  G  V         A + +  +         P   
Sbjct: 5   LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGN 64

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKF-RSLNILVLNAGVFGLGFSHTEDGF 224
             A + ++   ++ +   E+ Q  F R  +++V  AG+       T+D F
Sbjct: 65  HAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI-------TQDEF 107

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261

 Score = 71.4 bits (176), Expect = 1e-14
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A++TGA +G G   A+  A  G +V++  R    A     +I         +A+
Sbjct: 6   SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAV 60

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
             ++ +   V    E    KF  ++ILV NAG+     +      + F+    VN
Sbjct: 61  AADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVN 115

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277

 Score = 71.4 bits (176), Expect = 2e-14
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL+    IVTG  +GIG  TA   A +G  V++A  + D A    ++I      ++   +
Sbjct: 24  DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGV 78

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
            +++   K  +   E+   K+  +++LV NAG    G      E+ ++    VN
Sbjct: 79  RVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVN 132

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAM 179
           L    A+VTGA  GIG E A  L   GC+VI+    S + A + ++ I  +K  +    +
Sbjct: 27  LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAI--KKNGSDAACV 84

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFY 237
           + N+  ++ + +  EE  K F  L+I+  N+GV   G     T + F+  F +N    F+
Sbjct: 85  KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF 144

Query: 238 LT 239
           + 
Sbjct: 145 VA 146

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L+   A++TG  +G+G          G RV +  +S ++  +              + + 
Sbjct: 3   LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVV 57

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS-------HTEDGFETTFQVNHL 233
            ++  L+  K+ AE     F  ++ L+ NAG++    +         +  F+  F VN  
Sbjct: 58  GDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVK 117

Query: 234 AHFYLT 239
            + +  
Sbjct: 118 GYIHAV 123

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250

 Score = 70.6 bits (174), Expect = 3e-14
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVTGA++G G   A      G RV     S +   +            + + +  ++  
Sbjct: 5   AIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA-DKVLRVRADVAD 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH-----TEDGFETTFQVN 231
              V        ++F ++++LV NAG+ G   +        + F+    VN
Sbjct: 64  EGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVN 114

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54

 Score = 65.6 bits (160), Expect = 3e-14
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
            +LP GWE+    +G V++V+H  + T +  PR       +   P
Sbjct: 9  AGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKP 54

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54

 Score = 62.1 bits (151), Expect = 4e-13
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 48 TGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEK 96
          +  +K+V+GDLP GWE+   E+G++ F +      TY DPR+ F  ++ 
Sbjct: 2  SAKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDN 50

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249

 Score = 70.6 bits (174), Expect = 3e-14
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 19/122 (15%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            + +   +V  A+ GIG   A  L+  G  V +  R+ +    +                
Sbjct: 16  GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS--------------GH 61

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
              +C    ++K  +   +K + ++ILVLNAG    G     T + F+       L    
Sbjct: 62  RYVVC---DLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIK 118

Query: 238 LT 239
           + 
Sbjct: 119 IV 120

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253

 Score = 70.6 bits (174), Expect = 3e-14
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTG  +G+G E  + L   G +V  +  +        +++       + + +  ++  
Sbjct: 9   ALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSS 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
                      Q++  +LN+LV NAG+   G       + F    ++N
Sbjct: 64  EADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKIN 111

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L++  A+VTGA+ GIG   A  LA  G +V +   S   A D +   +      +  A+
Sbjct: 25  PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA-GGEAFAV 83

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           + ++ +   V+       +++  L++LV NAG+
Sbjct: 84  KADVSQESEVEALFAAVIERWGRLDVLVNNAGI 116

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 106 YDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAIS 165
             H       L  R   + + +VTG N GIG   AR+ A  G +V +  RS         
Sbjct: 4   SHHHHHHSSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRS--------- 54

Query: 166 KILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG-- 223
                +P    +A++ ++   + V++  +E ++    + +L+ NAGV       T+D   
Sbjct: 55  ----GEPPEGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGV-------TKDQLL 103

Query: 224 -------FETTFQVNHLAHFYLT 239
                  F +  + N    F + 
Sbjct: 104 MRMSEEDFTSVVETNLTGTFRVV 126

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 100 LDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLD 158
           L     Y  S      L G+      A VTG + GIG   A+ LAL G  V L    + +
Sbjct: 13  LGTENLYFQSMMTSISLAGK-----TAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAE 67

Query: 159 KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF- 217
           +A   +S+I  E+   + +A+  +    +++++   E  +    L+ILV +AG++     
Sbjct: 68  RAQAVVSEI--EQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPL 125

Query: 218 -SHTEDGFETTFQVNHLAHFYLT 239
              T   F+    VN  A F   
Sbjct: 126 EETTVADFDEVMAVNFRAPFVAI 148

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246

 Score = 70.2 bits (173), Expect = 3e-14
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A+VTGA+ GIG   A  LA  G  V++     ++  + +   + +   +  IA+ 
Sbjct: 2   LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL-GSDAIAVR 60

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            ++   + V    ++    F  ++ILV NAGV
Sbjct: 61  ADVANAEDVTNMVKQTVDVFGQVDILVNNAGV 92

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 17/137 (12%)

Query: 106 YDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAIS 165
           + H   +  ++      + N +V G +  +G E  +         I      +   D   
Sbjct: 5   HHHHHHSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH-- 62

Query: 166 KILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTED 222
                       +  +     + +K   E+   K   ++  V  AG +  G +       
Sbjct: 63  ------------SFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLK 110

Query: 223 GFETTFQVNHLAHFYLT 239
             +    +N  + F   
Sbjct: 111 SVKGMIDMNLYSAFASA 127

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270

 Score = 70.3 bits (173), Expect = 4e-14
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAM 179
           L    A+VTG+  GIG   A  L   G +V++    S   A   +S+I  +   +  IA+
Sbjct: 16  LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEI--KALGSDAIAI 73

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFY 237
           + ++ ++  + K  ++    F  L+I V N+GV   G     TE+ F+  F +N    F+
Sbjct: 74  KADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFF 133

Query: 238 LT 239
           + 
Sbjct: 134 VA 135

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245

 Score = 69.8 bits (172), Expect = 4e-14
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L +   ++TGA  GIG  T    A  G R++          +A   +           +
Sbjct: 2   RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPV 54

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
            +++    SV++   E       L+ +V  AG+      +    + +E   +VN    F 
Sbjct: 55  VMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFL 114

Query: 238 LT 239
           + 
Sbjct: 115 VA 116

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260

 Score = 69.9 bits (172), Expect = 5e-14
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+V+G   G+G    R++   G +V+      ++     +++     +     + L++ +
Sbjct: 10  ALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQ 64

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
               K   +     F  L++LV NAG+  +G         ++    VN
Sbjct: 65  PAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVN 112

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246

 Score = 69.4 bits (171), Expect = 6e-14
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
               +A+VTGA+ GIG   A  LA  G  V +      +  +A+ + +  K      A++
Sbjct: 2   KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK-GVDSFAIQ 60

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
            N+     VK   +E   +F SL++LV NAG+
Sbjct: 61  ANVADADEVKAMIKEVVSQFGSLDVLVNNAGI 92

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269

 Score = 69.9 bits (172), Expect = 6e-14
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 98  NPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL 157
           +   +      +     +   R      A VTG   G+G   +R L   G  V ++    
Sbjct: 5   HHHHMGTLEAQTQGPGSMQAKR-----VAFVTGGMGGLGAAISRRLHDAGMAVAVSHSER 59

Query: 158 DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           +           +       A  +++   +S ++ AE+    F  +++L+ NAG+
Sbjct: 60  NDHVSTWLMHERDAG-RDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGI 113

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277

 Score = 69.9 bits (172), Expect = 6e-14
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
            DL+   AIVTGA  GIG   AR LA  GC V+ A    D A+ A +KI          A
Sbjct: 25  PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAA 79

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
             +++   + +    +     F  ++ LV NAGV  L      T + F+    +N
Sbjct: 80  CRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAIN 134

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271

 Score = 69.5 bits (171), Expect = 7e-14
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 9/116 (7%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           +L N  AI+TGA  GIG ET+R LA  G RV+LA         A + +         +  
Sbjct: 8   ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHH 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFETTFQVN 231
            ++L    SV+   +     F  L+I+  NA             T D ++ TF VN
Sbjct: 63  VVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVN 118

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294

 Score = 69.9 bits (172), Expect = 7e-14
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 22/149 (14%)

Query: 99  PLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD 158
           P    + Y  S +         L +  A+VTG ++GIG   A + A  G  V +     +
Sbjct: 34  PDCGEKSYVGSGR---------LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAE 84

Query: 159 K--ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 216
           +  A    + I  E+   + + +  +L      +    + ++    L+IL L AG     
Sbjct: 85  EEDAQQVKALI--EECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGK---Q 139

Query: 217 FSH------TEDGFETTFQVNHLAHFYLT 239
            +       T + F+ TF VN  A F++T
Sbjct: 140 TAIPEIKDLTSEQFQQTFAVNVFALFWIT 168

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291

 Score = 69.9 bits (172), Expect = 7e-14
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQ 175
             + L   N ++TG ++GIG   + + A  G  + +A       AN+    +  EK   +
Sbjct: 42  SEK-LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYV--EKEGVK 98

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH---TEDGFETTFQVNH 232
           C+ +  +L   +  K   +E  ++  SLNILV N             T +  E TF++N 
Sbjct: 99  CVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINI 158

Query: 233 LAHFYLT 239
            ++F++T
Sbjct: 159 FSYFHVT 165

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346

 Score = 70.2 bits (172), Expect = 7e-14
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 7/127 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILT-----EKPSA 174
            L+     +TGA+ GIG   A   A  G  +++A ++       +  I T     E    
Sbjct: 42  RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG 101

Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNH 232
           + +   +++   + +    E+  KKF  ++ILV NA    L  +        +    VN 
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNT 161

Query: 233 LAHFYLT 239
              +  +
Sbjct: 162 RGTYLAS 168

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276

 Score = 69.6 bits (171), Expect = 8e-14
 Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 17/137 (12%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
                 A++TG    IG   A  L   G RV++  R  + A   +   L    +   +  
Sbjct: 8   ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLC 67

Query: 180 ELNLCRLKSVKKFAE----EYQKKFRSLNILVLNAGVFGLG-------------FSHTED 222
           + +L    S+    E       + F   ++LV NA  +                    + 
Sbjct: 68  KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDA 127

Query: 223 GFETTFQVNHLAHFYLT 239
                F  N +A  +L 
Sbjct: 128 QVAELFGSNAVAPLFLI 144

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254

 Score = 69.1 bits (170), Expect = 8e-14
 Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 11/117 (9%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVT      G  +A  L+  G  V     S  +  D +               +L    
Sbjct: 4   AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQK-DELEAFAET-------YPQLKPMS 55

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAHFYLT 239
            +   +  E     +  +++LV N      F     +  + +    +   +  F L 
Sbjct: 56  EQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALV 112

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             +   AIVTG   GIG   AR+LA  G  + +      +    +   L+    A+ I +
Sbjct: 26  QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL-GARVIFL 84

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFETTFQVNHLAH 235
             +L  L S +   +    +F  ++ LV NAG+  +          + F+T   VN    
Sbjct: 85  RADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGT 144

Query: 236 FYLT 239
            + T
Sbjct: 145 VFFT 148

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            +    A++TG  +G+G  TA  L   G   +L             K+        C+  
Sbjct: 9   SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFA 63

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--------FGLGFSHTEDGFETTFQVN 231
             ++   K V+      + KF  +++ V  AG+           G +HT + F+    VN
Sbjct: 64  PADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVN 123

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            +S   A VTG   GIG    + L   G RV+  C           +           A 
Sbjct: 10  VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL-GFDFYAS 68

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
           E N+    S K+  ++ + +   +++LV NAG+
Sbjct: 69  EGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI 101

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 13/119 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VT A    G     +L   G  V+    S   A +       E P    +A +     
Sbjct: 4   ALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFES-ENPGTIALAEQ----- 57

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF-----SHTEDGFETTFQVNHLAHFYLT 239
               ++  +   +   +++ +V N  +            +E      F+   +    L 
Sbjct: 58  --KPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLL 114

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 11/122 (9%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A+VTGA  G+G E  + L+       L  R+ +    A+++I           +
Sbjct: 2   SLKKKIAVVTGATGGMGIEIVKDLSRDHIVYALG-RNPEHL-AALAEIE------GVEPI 53

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFY 237
           E ++ +    +   ++  K    ++ LV  A V         +   +     +N +    
Sbjct: 54  ESDIVKEVLEEGGVDK-LKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAE 112

Query: 238 LT 239
           L+
Sbjct: 113 LS 114

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILT-----EKPSA 174
            L      ++G + GIG   A+ +A  G  V L  +S +        I T     E+   
Sbjct: 6   SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65

Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNH 232
           Q + +  ++    +V     +  ++F  ++I V NA    LG         F+    +  
Sbjct: 66  QALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQV 125

Query: 233 LAHFYLT 239
              + ++
Sbjct: 126 RGTYAVS 132

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 15/122 (12%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
              + + +VTG N GIG   A+ LA  G +V +  R                       +
Sbjct: 12  PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG-------------SGAPKGLFGV 58

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
           E+++    +V +     ++    + +LV NAG+         TE+ FE     N    F 
Sbjct: 59  EVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFR 118

Query: 238 LT 239
           + 
Sbjct: 119 VA 120

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244

 Score = 67.9 bits (167), Expect = 2e-13
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +VTGA+ GIG   A SL   GC+V++      KA + +SK +      Q I    ++ +
Sbjct: 4   VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY-GGQAITFGGDVSK 62

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
              V+   +     + +++++V NAG+
Sbjct: 63  EADVEAMMKTAIDAWGTIDVVVNNAGI 89

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239

 Score = 67.9 bits (167), Expect = 2e-13
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTG + GIG   A +L   G RV +A R+ ++A  +             + +  +L +
Sbjct: 5   ALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQS----------LGAVPLPTDLEK 54

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYLT 239
               K   +   +    L++LV  A V         + + +     ++    F L 
Sbjct: 55  -DDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLA 109

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 7/127 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILT-----EKPSA 174
            LS     +TGA+ GIG   A   A  G  V +A +S          I +          
Sbjct: 3   TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62

Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNH 232
           Q +A++ ++     V+         F  ++ILV NA    L  +       F+   QVN 
Sbjct: 63  QGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNA 122

Query: 233 LAHFYLT 239
              F   
Sbjct: 123 RGSFVCA 129

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVTGA++GIG   A   A  G +V++  R+ +   +   +I       +  A+  ++  
Sbjct: 11  AIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEI--AGGGGEAAALAGDVGD 68

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
               +   E   ++F  L+    NAG  G        + +G+  T   N
Sbjct: 69  EALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTN 117

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249

 Score = 67.5 bits (166), Expect = 3e-13
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL+   +++TGA++GIG   AR L   G +VI++  + +K     + +            
Sbjct: 11  DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIE 65

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
             NL   +       +      +L+ILV NAG+
Sbjct: 66  VCNLANKEECSNLISK----TSNLDILVCNAGI 94

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 11/118 (9%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L +   IVTGA++G+G    R LA  G  V+          +  +++      A     
Sbjct: 4   QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFR 58

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV------FGLGFSHTEDGFETTFQVN 231
             ++             +++F  ++ LV  AG        G    H  D F  T  VN
Sbjct: 59  NADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVN 116

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A+VTG+ +GIG   A+ LA  G  ++L          A+++I   +   + +   
Sbjct: 2   LKGKTALVTGSTSGIGLGIAQVLARAGANIVLN--GFGDPAPALAEI--ARHGVKAVHHP 57

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYL 238
            +L  +  ++      +++F  ++ILV NAG+  +        + ++    +N  A F+ 
Sbjct: 58  ADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHG 117

Query: 239 T 239
           T
Sbjct: 118 T 118

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 49

 Score = 62.2 bits (151), Expect = 3e-13
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
            + LPPGWE   +++   YYV+H  +  Q+ HP
Sbjct: 10 EREGLPPGWERVESSEFGTYYVDHTNKRAQYRHP 43

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 49

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 6/49 (12%)

Query: 41 TQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          +  + P           LP GWE+  S +    + +       Y  P  
Sbjct: 3  SGSSGPLE------REGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245

 Score = 67.1 bits (165), Expect = 4e-13
 Identities = 20/88 (22%), Positives = 38/88 (43%)

Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
            A++TGA+ GIG   A  LA  G  + +      +  + +++    + S     +  NL 
Sbjct: 3   KALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLL 62

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGV 212
             ++      +  +    L+ LV NAG+
Sbjct: 63  EAEAATALVHQAAEVLGGLDTLVNNAGI 90

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244

 Score = 66.8 bits (164), Expect = 5e-13
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 15/109 (13%)

Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           N +VTG + GIG      L  +    ++        +                 ++ +L 
Sbjct: 6   NYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSA-----------ENLKFIKADLT 54

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
           + + +    +    K  S + + LNAG+   G       +  +    +N
Sbjct: 55  KQQDITNVLDI--IKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLN 101

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266

 Score = 67.2 bits (165), Expect = 5e-13
 Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 15/139 (10%)

Query: 103 RQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND 162
               D  T+ L     +      A+VTGA  GIG     +L   G RV +A R++     
Sbjct: 8   SSGVDLGTENLYFQSMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA 67

Query: 163 AISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHT 220
                         + +  +L                   L+I+V NAGV   G     T
Sbjct: 68  D-------------LHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETT 114

Query: 221 EDGFETTFQVNHLAHFYLT 239
           +  +  +  VN  A F + 
Sbjct: 115 DADWSLSLGVNVEAPFRIC 133

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270

 Score = 67.2 bits (165), Expect = 5e-13
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 9/109 (8%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +VTG   GIG    R+    G RV++  +          ++         + +  ++ +
Sbjct: 12  VVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQ 65

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
              VK    E  ++F  L+ +V NAG           +  GF    ++N
Sbjct: 66  EDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELN 114

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260

 Score = 66.5 bits (163), Expect = 7e-13
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 12/129 (9%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           ++    +VTGA+ GIG   A  L   G  V +  R LD       +   +    QC+ + 
Sbjct: 3   MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEA--QSLGGQCVPVV 60

Query: 181 LNLCRLKSVKKFAEEYQK-KFRSLNILVLNAGVFGLGFSHTEDG---------FETTFQV 230
            +  +   V+   E+  + +   L++LV NA        +T +          ++    V
Sbjct: 61  CDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNV 120

Query: 231 NHLAHFYLT 239
               H++ +
Sbjct: 121 GLRGHYFCS 129

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 19/150 (12%), Positives = 38/150 (25%), Gaps = 32/150 (21%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            ++ GA+  +G      L      VI A R                       + +++  
Sbjct: 6   ILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITN 45

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYLTLQLE 243
           + S+KK  E+       ++ +V   G          T +    T          L L   
Sbjct: 46  IDSIKKMYEQ----VGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGI 101

Query: 244 NALIKGAK------LFARQQGAATSIYCAT 267
           ++L           +         +     
Sbjct: 102 DSLNDKGSFTLTTGIMMEDPIVQGASAAMA 131

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259

 Score = 66.0 bits (162), Expect = 1e-12
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCI 177
           +  +N   +V GA   IG   A   A  G  V+L    + + A  A+++I  EK     +
Sbjct: 4   QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEI--EKLGRSAL 61

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLA 234
           A++ +L     V+        KF  ++ LV  AG            E  +     VN  +
Sbjct: 62  AIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTS 121

Query: 235 HFYLT 239
            F   
Sbjct: 122 LFLTA 126

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264

 Score = 66.0 bits (162), Expect = 1e-12
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL +   IVTGA+ GIG   A      G +VI                + +   A+   +
Sbjct: 5   DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDL----S---------IHDPGEAKYDHI 51

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
           E ++     VK   +   K++ S+++LV NAG+   G     +   +     VN
Sbjct: 52  ECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVN 105

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 12/119 (10%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
                +AIV+G   G+G  T R L   G  V++A  + +K      ++       +   +
Sbjct: 27  QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFV 81

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVN 231
             N+    SV    E   +  R    +V + G           G      GF  T  + 
Sbjct: 82  STNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLY 140

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278

 Score = 66.0 bits (162), Expect = 1e-12
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AI+TG   GIG  TA+    +G +V++A  + D      + I           +  ++ +
Sbjct: 19  AIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI---GSPDVISFVHCDVTK 75

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFETTFQVN 231
            + V+   +    K   L+I+  N GV             + F+    +N
Sbjct: 76  DEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDIN 125

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 14/115 (12%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
            + ++  AIVTG ++GIG     +L  +G +V+          +                
Sbjct: 10  EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF----------- 58

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
            ++++   + VK+  E+  KK+  ++ILV NAG+      H    + +     VN
Sbjct: 59  -KIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVN 112

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207

 Score = 63.0 bits (154), Expect = 7e-12
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 15/108 (13%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            ++TGA  G+G   AR  AL G  ++L+ R      +     L  +  A+ +    +L  
Sbjct: 3   VLITGATGGLGGAFAR--ALKGHDLLLSGRRAGALAE-----LAREVGARALP--ADLAD 53

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHT-EDGFETTFQVN 231
               K   EE       L++LV   G  G         D  E     +
Sbjct: 54  ELEAKALLEE----AGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAH 97

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 33/153 (21%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             +   A+VTGA   +G   A  L   G  V L         +A+S  L  +     I +
Sbjct: 6   APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITV 65

Query: 180 ELNLCR-----------------LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHT 220
           + +L                        +        +   ++LV NA  F       + 
Sbjct: 66  QADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRND 125

Query: 221 EDGFETT--------------FQVNHLAHFYLT 239
           EDG E                F  N +A ++L 
Sbjct: 126 EDGHEPCVGDREAMETATADLFGSNAIAPYFLI 158

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
            +    +VTG   GIG   A++ A  G  V L      +  +    I            +
Sbjct: 4   FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-PEGKEVAEAI-------GGAFFQ 55

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
           ++L   +   +F EE       +++LV NA +   G +       +    +VN
Sbjct: 56  VDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVN 108

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 33/153 (21%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
             +   A+VTGA   +G   A  L   G  V L         +A+S  L  +     I +
Sbjct: 43  APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITV 102

Query: 180 ELNLCR-----------------LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHT 220
           + +L                        +        +   ++LV NA  F       + 
Sbjct: 103 QADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRND 162

Query: 221 EDGFETT--------------FQVNHLAHFYLT 239
           EDG E                F  N +A ++L 
Sbjct: 163 EDGHEPCVGDREAMETATADLFGSNAIAPYFLI 195

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           GR L     I+T A  GIG   A + A  G +VI    +  K    + K    +      
Sbjct: 2   GR-LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKL-QELEKYPGIQ------ 53

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
              L++ + K + +FA E ++    L++L   AG    G      E  ++ +  +N
Sbjct: 54  TRVLDVTKKKQIDQFANEVER----LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLN 105

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           + L    A+VTGA  GIG   A   A  G  V+     +D A + + ++  +       A
Sbjct: 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAI--DVDGAAEDLKRVADK---VGGTA 263

Query: 179 MELNLCRLKSVKKFAEEYQKKF-RSLNILVLNAGV 212
           + L++    +V K      +     ++ILV NAG+
Sbjct: 264 LTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGI 298

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           ++ +  A+VTG  +G+G  T + L   G +V++    LD   + +   L      +    
Sbjct: 6   EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVV----LDIRGEDVVADL----GDRARFA 57

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV------FGLGFSHTEDGFETTFQVN 231
             ++    +V   A +  +   +L I+V  AG              +   F     +N
Sbjct: 58  AADVTDEAAVAS-ALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDIN 114

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLC 184
            +VTG + GIG    R  A  G RV +    + + A+  ++ I   +   + +A+  ++ 
Sbjct: 29  VLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAI--TESGGEAVAIPGDVG 86

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLT 239
               +        ++F  L+ LV NAG+          + +  E   +VN        
Sbjct: 87  NAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCA 144

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 23/124 (18%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +++G  TGIG  T + L   G +++       +  + I+ + T +   Q I        
Sbjct: 4   IVISGCATGIGAATRKVLEAAGHQIVGIDI---RDAEVIADLSTAEGRKQAI-------- 52

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA 245
                  A+   K  + ++ LVL AG+                 VN+     L      A
Sbjct: 53  -------ADVLAKCSKGMDGLVLCAGL-----GPQTKVLGNVVSVNYFGATELMDAFLPA 100

Query: 246 LIKG 249
           L KG
Sbjct: 101 LKKG 104

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 31/158 (19%)

Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK 187
           VTGA++G G   A +    G  VI   R  +  +D     L      +  A+ L++   +
Sbjct: 10  VTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDD-----LVAAYPDRAEAISLDVTDGE 64

Query: 188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFYLTLQLENA 245
            +   A +   ++  +++LV NAG   +G     TE      F+++     +   +L  A
Sbjct: 65  RIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELH----VFGPARLTRA 120

Query: 246 LIKGAKLFARQQG----------------AATSIYCAT 267
           L+       R++G                A  S Y AT
Sbjct: 121 LLP----QMRERGSGSVVNISSFGGQLSFAGFSAYSAT 154

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKI--------LTEKPSAQ 175
            +VTG   G G   A  LA  G  +IL   C  ++     ++            EK   +
Sbjct: 13  VLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRK 72

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVN 231
               E+++    +V +       +F  L+++V NAG+  LG       F   F V+
Sbjct: 73  AYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVD 128

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 17/124 (13%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           +S+   IV G    +G         +G  V+     L   + A             I ++
Sbjct: 1   MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNI--DLSANDQA----------DSNILVD 48

Query: 181 LNLCRLKSVKKFAEEYQKKFRS--LNILVLNAGVFGLGFSHTEDG---FETTFQVNHLAH 235
            N    +  +   E+     +   ++ +   AG +  G + ++D     +   + +  + 
Sbjct: 49  GNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSS 108

Query: 236 FYLT 239
               
Sbjct: 109 AIAA 112

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA---QCIAMELN 182
            ++TGA++G G  TA +LA  G RV  + R +   N +  + +             +EL+
Sbjct: 8   ILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELD 67

Query: 183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVN 231
           +    SV +  ++   +   +++L+ NAG    G   + T + F   + +N
Sbjct: 68  VQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDIN 118

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 15/153 (9%), Positives = 43/153 (28%), Gaps = 23/153 (15%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +V G    +G    ++       V      + +  +A          +  + +++    
Sbjct: 10  VLVYGGRGALGSRCVQAFRARNWWVASI--DVVENEEA----------SASVIVKMTDSF 57

Query: 186 LKSVKKFAEEYQKKFRS--LNILVLNAGVFGLGFSHTE---DGFETTFQVNHLAHFYLTL 240
            +   +   E  K      ++ ++  AG +  G + ++      +  ++ +       + 
Sbjct: 58  TEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSH 117

Query: 241 QLENALIKGAKLF------ARQQGAATSIYCAT 267
                L +G  L       A         Y   
Sbjct: 118 LATKHLKEGGLLTLAGAKAALDGTPGMIGYGMA 150

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317

 Score = 58.0 bits (141), Expect = 9e-10
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 12/118 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAIS--------KILTEKPSAQ 175
           A +TGA  G G   A  LA  G  ++    CR     + A            L E+   +
Sbjct: 49  AFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRR 108

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 231
            IA + ++  L S++   +E   +F  ++ILV N G+   G   S T+  +    Q N
Sbjct: 109 IIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTN 166

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKILT------------EK 171
           A VTGA  G G   A  LA  G  +I    C+ +       +   +            + 
Sbjct: 14  AFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG 73

Query: 172 PSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTF 228
            + + +  E+++    ++K   +   ++   L+I+V NAG+   G +    +E+ +    
Sbjct: 74  HNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMI 133

Query: 229 QVN 231
            +N
Sbjct: 134 DIN 136

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 13/119 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKI---------LTEKPSA 174
           A +TGA  G G   A  +A  G  +I       L                   L E  + 
Sbjct: 14  AFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR 73

Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
           + +A  ++      ++K  ++       L+I+V NAGV         T + F     +N
Sbjct: 74  RIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDIN 132

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280

 Score = 55.6 bits (135), Expect = 5e-09
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 13/119 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKI---------LTEKPSA 174
           A +TGA  G G   A  LA  G  +I    C  +  +                L E    
Sbjct: 18  AFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR 77

Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
           + +   L++    ++++   +  ++F  L+++V NAGV   G     T++ ++T   VN
Sbjct: 78  KALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVN 136

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKI--------LTEKPSAQ 175
           A +TGA  G G   A  LA  G  +I    C  +      ++          L E   ++
Sbjct: 16  AFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSR 75

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVN 231
            +A + ++   +S+    +    +   L+I+V NAG+  +     +DG+     VN
Sbjct: 76  IVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVIDVN 129

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 126 AIVTGANTGIGFETARSLA---LHGCRVILACRSLDKANDAISKILTEKPSAQCI-AMEL 181
            ++TG ++GIG   A  LA       +V    R L                   +  ++L
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64

Query: 182 NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVN 231
           ++   KSV    E        +++LV NAG+  LG   +  ED   +   VN
Sbjct: 65  DVRDSKSVAAARER--VTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVN 114

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTG  +G+G   A +L   G RV++    LD   +              I +E ++ R
Sbjct: 5   ALVTGGASGLGRAAALALKARGYRVVV----LDLRREG----------EDLIYVEGDVTR 50

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV------FGLGFSHTEDGFETTFQVN 231
            + V++     Q++   L  +V  AGV       G    H  + F    +VN
Sbjct: 51  EEDVRRAVARAQEEAP-LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVN 101

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Length = 261

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 8  LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDL 58
                   +   WE  ++ +   YY+NH T+ T W HP+     +   DL
Sbjct: 3  ASQHFLSTSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADL 53

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKI--------LTEKPSAQ 175
           A +TGA  G G   A +LA  G  +I    C+ LD     +S            E    +
Sbjct: 31  AFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRR 90

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
            IA ++++    +++   ++   +   L+I++ NA +   G          +     VN
Sbjct: 91  IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVN 149

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVIL--ACRSLDKANDAIS--------KILT 169
           D     A++TG   G+G   A +LA  G  + +   C + D     ++          L 
Sbjct: 7   DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66

Query: 170 EKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETT 227
           EK   +CI+ ++++    +++ F  E +     ++I + NAG+    L        ++  
Sbjct: 67  EKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEV 126

Query: 228 FQVN 231
              N
Sbjct: 127 IGTN 130

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 27/153 (17%), Positives = 40/153 (26%), Gaps = 11/153 (7%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
             +TG+ +GIG      LA  G  VI   R        +S     + +   +        
Sbjct: 4   IAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVL 63

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLT-- 239
              V             L + V   GV     GL  + +         V  +A       
Sbjct: 64  DGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAA 123

Query: 240 -----LQLENALIKGAKLFARQQGAATSIYCAT 267
                  +       A   A QQG     Y  +
Sbjct: 124 ELPMVEAMLAGDEARAIELAEQQGQTHLAYAGS 156

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKI 167
           G  +    A+V      +G  +A  LA  G  V+L  R LDKA  A   +
Sbjct: 114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV 163

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 55

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
            +++ +LP GW       G  YY +  T  TQW  P  
Sbjct: 13 AFETDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 50

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 39

 Score = 44.2 bits (104), Expect = 8e-07
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
           S S   LPPGW +   A G  YY +  +  TQW  P
Sbjct: 2  SSGSSGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP 37

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Length = 54

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 11 SDSEDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          S     LP GWE R + +    YY N AT  ++W  P
Sbjct: 2  SMVNTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 14/126 (11%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVI----------LACRSLDKANDAISKILTEKPSAQ 175
            IVTGA  GIG   A + A  G RV+                  A   + +I       +
Sbjct: 30  VIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEI--TAAGGE 87

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHL 233
            +A   N+          +   + F  L++LV NAG+    +  + +E+ F+    V+  
Sbjct: 88  AVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLK 147

Query: 234 AHFYLT 239
            HF   
Sbjct: 148 GHFATM 153

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVIL---------ACRSLDKANDAISKILTEKPSAQC 176
            I+TGA  G+G   +   A  G +V++            +   A+  + +I   K     
Sbjct: 11  VIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEI--VKNGGVA 68

Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLA 234
           +A   +   +    K  E   K F ++++++ NAG+         TE  ++    V+   
Sbjct: 69  VA---DYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNG 125

Query: 235 HFYLT 239
            F +T
Sbjct: 126 AFAVT 130

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 13/155 (8%)

Query: 87  PRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALH 146
           P ++       N        D S      L  +       ++TGA  G+G E A+  A +
Sbjct: 291 PFMLNDYATLTNEARKLPANDASGAPTVSLKDKV-----VLITGAGAGLGKEYAKWFAKY 345

Query: 147 GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNIL 206
           G +V++       A   + +I  +    +    + ++   K  +   +    K+ +++IL
Sbjct: 346 GAKVVVN--DFKDATKTVDEI--KAAGGEAWPDQHDVA--KDSEAIIKNVIDKYGTIDIL 399

Query: 207 VLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLT 239
           V NAG+         ++  +++  QV+ +  F L+
Sbjct: 400 VNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLS 434

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPS---AQCIAMEL- 181
            +VTGA  G+G   A + A  G  V++        ND              A  +  E+ 
Sbjct: 12  VLVTGAGGGLGRAYALAFAERGALVVV--------NDLGGDFKGVGKGSSAADKVVEEIR 63

Query: 182 --------NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
                   N   +++ +K  +     F  ++++V NAG+         +++ ++   +V+
Sbjct: 64  RRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVH 123

Query: 232 HLAHFYLT 239
               F +T
Sbjct: 124 LRGSFQVT 131

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 22/128 (17%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKAND---AISKILTEKPSAQCIAMEL- 181
           A+VTGA  G+G E A   A  G +V++        ND     S     + +A  +  E+ 
Sbjct: 22  AVVTGAGAGLGREYALLFAERGAKVVV--------NDLGGTHSGDGASQRAADIVVDEIR 73

Query: 182 --------NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
                   +   +    K  E   K F  ++ILV NAG+         +E  +     V+
Sbjct: 74  KAGGEAVADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVH 133

Query: 232 HLAHFYLT 239
               F  T
Sbjct: 134 LKGSFKCT 141

>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40

 Score = 38.6 bits (90), Expect = 6e-05
 Identities = 14/36 (38%), Positives = 15/36 (41%)

Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          S         W E  T DG VYY N  T  + WT P
Sbjct: 2  SSGSSGTEEIWVENKTPDGKVYYYNARTRESAWTKP 37

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
          ++     LP GWE R+T    VY+V+H T+ T W  PR 
Sbjct: 2  NASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRL 40

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Length = 177

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 11 SDSEDELPPGWEERVTA-DGCVYYVNHATEGTQWTHP 46
          + +   LPP W  RV+      Y++N +T  + W  P
Sbjct: 2  ASTSTGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPP 38

>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 18 PPGWEERVTADGCVYYVNHATEGTQWTHP 46
             W E  + DG  YY N  T+ + W  P
Sbjct: 11 KSMWTEHKSPDGRTYYYNTETKQSTWEKP 39

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Length = 38

 Score = 35.4 bits (81), Expect = 8e-04
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 16 ELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          +LP GW       G  YY +  T  TQW  P
Sbjct: 3  DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPP 32

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	100.0
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	100.0
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	100.0
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	100.0
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	100.0
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	100.0
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	100.0
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	100.0
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	100.0
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	100.0
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	100.0
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	100.0
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	100.0
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	100.0
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	100.0
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	100.0
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	100.0
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	100.0
3rih_A	293	Short chain dehydrogenase or reductase; structural	100.0
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	100.0
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	100.0
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	100.0
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	100.0
4dqx_A	277	Probable oxidoreductase protein; structural genomi	100.0
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	100.0
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	100.0
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	100.0
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	100.0
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	100.0
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	100.0
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	100.0
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	100.0
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	100.0
3imf_A	257	Short chain dehydrogenase; structural genomics, in	100.0
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	100.0
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	100.0
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	100.0
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	100.0
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	100.0
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	100.0
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	100.0
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	100.0
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	100.0
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.98
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.98
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.98
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.98
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.98
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.98
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.98
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.98
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.98
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.98
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.98
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.98
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.98
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.98
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.98
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.98
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.98
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.98
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.98
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.97
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.97
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.97
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.97
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.97
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.97
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.97
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.97
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.97
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.97
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.97
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.97
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.97
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.97
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.97
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.97
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.97
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.97
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.97
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.97
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.97
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.97
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.97
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.97
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.97
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.97
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.97
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.97
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.97
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.97
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.97
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.97
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.97
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.97
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.97
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.97
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.97
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.97
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.97
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.97
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.97
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.97
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.97
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.97
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.97
1spx_A	278	Short-chain reductase family member (5L265); paral	99.97
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.97
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.97
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.97
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.97
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.97
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.97
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.97
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.97
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.97
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.97
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.97
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.97
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.97
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.97
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.97
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.97
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.96
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.96
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.96
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.96
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.96
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.96
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.96
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.96
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.96
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.96
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.96
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.96
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.96
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.96
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.96
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.96
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.96
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.96
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.96
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.96
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.96
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.96
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.96
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.96
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.96
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.96
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.96
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.96
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.96
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.96
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.96
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.96
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.96
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.96
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.96
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.96
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.96
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.96
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.96
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.96
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.96
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.95
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.95
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.95
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.95
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.95
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.95
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.95
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.95
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.95
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.95
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.95
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.95
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.95
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.95
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.95
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.95
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.95
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.95
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.95
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.95
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.95
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.95
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.95
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.94
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.94
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.94
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.94
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.94
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.94
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.94
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.94
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.94
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.94
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.94
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.94
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.93
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.93
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.93
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.93
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.93
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.92
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.92
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.91
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.91
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.91
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.91
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	99.91
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.91
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	99.9
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.9
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.88
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.88
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.88
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.86
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.86
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.83
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.83
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.8
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.8
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.8
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	99.79
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	99.76
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.74
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.73
2jxw_A	75	WW domain-binding protein 4; WW domain containing	99.71
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.7
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.67
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.66
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.66
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.65
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.63
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.61
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.61
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.61
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.6
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.59
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.59
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.58
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.58
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.57
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.57
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.57
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.57
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.56
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	99.56
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.56
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	99.55
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.55
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	99.55
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.55
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	99.54
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.54
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.53
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.53
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.53
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.52
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.52
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.52
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	99.51
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.51
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	99.51
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.51
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.5
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.5
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	99.5
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.5
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	99.49
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	99.49
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.49
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.49
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	99.48
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	99.48
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	99.48
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.47
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.47
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.47
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	99.47
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	99.47
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.46
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.46
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus}	99.46
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.45
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	99.45
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.44
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	99.44
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	99.44
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.43
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.43
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.43
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.43
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	99.43
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	99.42
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.42
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.42
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.41
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.41
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	99.41
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.4
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.4
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.4
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.4
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.39
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.39
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	99.38
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.38
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.38
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.38
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	99.37
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	99.36
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.34
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.33
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	99.33
1ymz_A	43	CC45; artificial protein, computational design, un	99.32
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.32
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	99.31
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.3
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.29
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	99.28
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.26
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.26
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.25
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.24
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.24
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	99.23
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.23
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	99.23
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.21
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.21
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	99.2
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.19
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.19
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	99.18
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.16
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.15
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.15
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	99.12
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.09
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.08
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	99.07
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	99.07
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	99.06
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	99.05
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	99.05
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	99.05
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	99.05
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.04
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	99.04
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	99.04
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	99.03
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.03
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.02
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.02
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	99.01
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	99.01
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	99.0
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus}	99.0
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	98.97
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	98.96
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	98.94
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.94
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	98.93
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	98.93
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	98.92
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	98.91
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.91
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	98.9
2jx8_A	52	Hpcif1, phosphorylated CTD-interacting factor 1; p	98.89
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	98.89
1ymz_A	43	CC45; artificial protein, computational design, un	98.89
2ysi_A	40	Transcription elongation regulator 1; Ca150, FBP28	98.88
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	98.85
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	98.85
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.83
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.8
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.79
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	98.78
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	98.77
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	98.76
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	98.73
1ywi_A	41	Formin-binding protein 3; WW domain, class II, pro	98.72
1e0l_A	37	Formin binding protein; SH3 domain, WW domain, FBP	98.71
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	98.68
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	98.66
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.65
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.64
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.64
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	98.63
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.61
2dk7_A	73	Transcription elongation regulator 1; structural g	98.58
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	98.49
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.48
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.46
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.45
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.44
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.43
2jxw_A	75	WW domain-binding protein 4; WW domain containing	98.42
1e0n_A	27	Hypothetical protein; YJQ8WW domain, WW domain, sa	98.42
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	98.41
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	98.41
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.41
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.4
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.38
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	98.36
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.35
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.34
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.33
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.32
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.27
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.27
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.25
2dk1_A	50	WW domain-binding protein 4; WBP-4, formin- bindin	98.23
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.22
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	98.21
2jx8_A	52	Hpcif1, phosphorylated CTD-interacting factor 1; p	98.15
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.13
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.13
2ysi_A	40	Transcription elongation regulator 1; Ca150, FBP28	98.1
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.1
1ywi_A	41	Formin-binding protein 3; WW domain, class II, pro	98.08
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	98.08
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	98.07
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	98.07
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.05
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	98.02
1e0l_A	37	Formin binding protein; SH3 domain, WW domain, FBP	98.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.96
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	97.95
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.92
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.91
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.89
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.89
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	97.87
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.87
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.85
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.85
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	97.82
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.82
1e0n_A	27	Hypothetical protein; YJQ8WW domain, WW domain, sa	97.81
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.8
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.8
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.79
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.78
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.76
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.76
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.71
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.69
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.69
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.68
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.65
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.6
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.58
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.56
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.54
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.53
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.47
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.47
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.46
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.43
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.43
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.4
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	97.4
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.31
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.26
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.26
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.25
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.24
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.23
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.23
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	97.22
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.21
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.19
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.18
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.18
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.12
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.11
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	97.11
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.08
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.07
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	97.03
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.01
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.01
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	97.01
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.99
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.99
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.94
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.94
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.92
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.92
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.92
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.89
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.89
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.89

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=100.00  E-value=3.7e-42  Score=304.35  Aligned_cols=208  Identities=17%  Similarity=0.210  Sum_probs=180.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|+||++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++.+.  +.++.++.||++|+++++++++++.
T Consensus         4 ~f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~   81 (255)
T 4g81_D            4 LFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAFDVTDELAIEAAFSKLD   81 (255)
T ss_dssp             TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999998876  6789999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                      ++||+||+||||||+.  .++.++++++|++++++|+.|+|+++|+++|+|.++         ||+.+..+.++...|++
T Consensus        82 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~~~Y~a  161 (255)
T 4g81_D           82 AEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTA  161 (255)
T ss_dssp             HTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTCHHHHH
T ss_pred             HHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCchhHHH
Confidence            9999999999999985  667899999999999999999999999999999643         67778888899999999


Q ss_pred             cCccccCCCC-------ccccccCccCCCCcccCCHHHHHHH-HHHHHHHHHH-HHhcccccccccccccC
Q psy4246         267 TSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +|+++. +++       +.+.+++|.+.|++..++......- .+..+.+.+. +++|+|+|||||++++|
T Consensus       162 sKaal~-~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~f  231 (255)
T 4g81_D          162 AKGGIK-MLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWGRPEELIGTAIF  231 (255)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTCSCBCGGGGHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence            999999 888       5677889999998887764322110 1122222222 49999999999999987

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=100.00  E-value=2.4e-42  Score=305.33  Aligned_cols=207  Identities=20%  Similarity=0.268  Sum_probs=177.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++...  +.++.++.||++|+++++++++++.+
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~   80 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM--GKEVLGVKADVSKKKDVEEFVRRTFE   80 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999999999999999999998776  67899999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +||+||+||||||+.   .++.++++++|+++|++|+.|+|+++|+++|+|+++        +|+.+..+.++...|+++
T Consensus        81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~~~~Y~as  160 (254)
T 4fn4_A           81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVA  160 (254)
T ss_dssp             HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSSSCHHHHHH
T ss_pred             HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCCCChHHHHH
Confidence            999999999999974   456899999999999999999999999999999876        777888888999999999


Q ss_pred             CccccCCCC-------ccccccCccCCCCcccCCHHHHHH--HHHHHHHHHHH--HHhcccccccccccccC
Q psy4246         268 SLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATK--LWKLSEEMIQS--VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~r~g~p~dia~~v~F  328 (328)
                      |+|+. +++       +.+.+++|.+.|++..++......  .....+...+.  +++|+|+|||||++|+|
T Consensus       161 Kaal~-~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~R~g~pediA~~v~f  231 (254)
T 4fn4_A          161 KHGLI-GLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVF  231 (254)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTCCCCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            99999 888       567788999888877765321100  00011112222  37999999999999987

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=100.00  E-value=2.1e-41  Score=302.16  Aligned_cols=206  Identities=19%  Similarity=0.242  Sum_probs=173.8

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |...|+||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++     +.++.++.||++|+++++++++++
T Consensus        23 Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~   97 (273)
T 4fgs_A           23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQADSANLAELDRLYEKV   97 (273)
T ss_dssp             --CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeEEEEecCCCHHHHHHHHHHH
Confidence            444699999999999999999999999999999999999999988887776     567889999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccC
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++||+||+||||||+.  .++.++++++|+++|++|+.|+|+++|+++|+|++.      +|+.+..+.++...|+++|
T Consensus        98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~~~~~Y~asK  177 (273)
T 4fgs_A           98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTPAFSVYAASK  177 (273)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCTTCHHHHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCCCchHHHHHH
Confidence            99999999999999984  678899999999999999999999999999999877      6667788889999999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHH--HH----HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALA--TK----LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +|+. +++       +.+.+++|.+.|++..++....  ..    ..+..+.+.+. +++|+|+|||||++|+|
T Consensus       178 aav~-~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~F  250 (273)
T 4fgs_A          178 AALR-SFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGRAEEVAAAALF  250 (273)
T ss_dssp             HHHH-HHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999 887       5577889999998887753211  11    11112223222 49999999999999987

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=100.00  E-value=9.7e-40  Score=289.87  Aligned_cols=208  Identities=17%  Similarity=0.158  Sum_probs=171.9

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |.++|+||++|||||++|||+++|+.|+++|++|++++|+.+..+ ..+++.+.  +.++.++.||++|+++++++++++
T Consensus         1 M~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~-~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~v~~~   77 (258)
T 4gkb_A            1 MDLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA-FLDALAQR--QPRATYLPVELQDDAQCRDAVAQT   77 (258)
T ss_dssp             CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH-HHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH-HHHHHHhc--CCCEEEEEeecCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999877654 34555555  568899999999999999999999


Q ss_pred             HHhcCCccEEEEccccC-CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccC
Q psy4246         197 QKKFRSLNILVLNAGVF-GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++||+||+||||||+. ....+.+.++|++++++|+.|+|+++|+++|+|+++       +|+.+..+.++...|+++|
T Consensus        78 ~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~~~Y~asK  157 (258)
T 4gkb_A           78 IATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQGNTSGYCASK  157 (258)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCCSSCHHHHHHH
T ss_pred             HHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCCCCchHHHHHH
Confidence            99999999999999985 345688999999999999999999999999999765       6777788889999999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHH--HH---HHHHHHHHHHH-HH-hcccccccccccccC
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALA--TK---LWKLSEEMIQS-VV-STWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~-~~-~r~g~p~dia~~v~F  328 (328)
                      +|+. +++       +.+.+++|.+.|+...++....  ..   ..+..+++... ++ +|+++|||||++|+|
T Consensus       158 aav~-~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg~R~g~peeiA~~v~f  230 (258)
T 4gkb_A          158 GAQL-ALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPLGRRFTTPDEIADTAVF  230 (258)
T ss_dssp             HHHH-HHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTTTTSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            9999 888       5677889999998877763211  11   11112222222 35 599999999999987

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.2e-39  Score=285.97  Aligned_cols=200  Identities=23%  Similarity=0.313  Sum_probs=166.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|+.|+++|++|++++|+..  ++..+++.+.  +.++.++.||++|+++++++++    
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~----   76 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKD--GGNASALLIDFADPLAAKDSFT----   76 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT--TCCEEEEECCTTSTTTTTTSST----
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHh--CCcEEEEEccCCCHHHHHHHHH----
Confidence            6899999999999999999999999999999999999864  3445555554  6789999999999999887764    


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                       +|+||+||||||+.  .++.++++++|++++++|+.|+|+++|+++|+|+++         +|+.+..+.++...|++|
T Consensus        77 -~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~~~Y~as  155 (247)
T 4hp8_A           77 -DAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRVPSYTAA  155 (247)
T ss_dssp             -TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSCHHHHHH
T ss_pred             -hCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCChHHHHH
Confidence             58999999999985  667899999999999999999999999999999754         667788888999999999


Q ss_pred             CccccCCCC-------ccccccCccCCCCcccCCHHHHHHH-HHHHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+++. +++       +.+.+++|.+.|++..++....... .+..+.+.+. +++|+|+|||||++|+|
T Consensus       156 Kaav~-~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~f  224 (247)
T 4hp8_A          156 KHGVA-GLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPAGRWGHSEDIAGAAVF  224 (247)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSSCBCTHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence            99999 888       5677899999999888764322110 1122223222 49999999999999987

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=100.00  E-value=3e-39  Score=282.69  Aligned_cols=195  Identities=18%  Similarity=0.214  Sum_probs=163.2

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ++||++|||||++|||+++|+.|+++|++|++++|+.+.+++.        .+.++..+.||++|+++++++++    ++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~--------~~~~~~~~~~Dv~~~~~v~~~~~----~~   76 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP--------RHPRIRREELDITDSQRLQRLFE----AL   76 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC--------CCTTEEEEECCTTCHHHHHHHHH----HC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh--------hcCCeEEEEecCCCHHHHHHHHH----hc
Confidence            5999999999999999999999999999999999997765321        25588999999999999887765    57


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCccccC
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLDLSL  273 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~al~~  273 (328)
                      |+||+||||||+..+..+++.++|+++|++|+.|+|+++|+++|+|+++       ||+.+..+.++...|++||+++. 
T Consensus        77 g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~~~Y~asKaav~-  155 (242)
T 4b79_A           77 PRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADRPAYSASKGAIV-  155 (242)
T ss_dssp             SCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCCSSCHHHHHHHHHHH-
T ss_pred             CCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCCCCCHHHHHHHHHHH-
Confidence            9999999999998888899999999999999999999999999999875       77788888899999999999999 


Q ss_pred             CCC-------ccccccCccCCCCcccCCHHHHHH-HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         274 PVS-------GSYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       274 ~~~-------g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +++       +.+.+++|.+.|++..++...... ..+..+++.+. +++|+|+|+|||++++|
T Consensus       156 ~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~f  219 (242)
T 4b79_A          156 QLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAF  219 (242)
T ss_dssp             HHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            888       567788999999988877432210 01222333333 49999999999999987

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=100.00  E-value=1.1e-38  Score=280.83  Aligned_cols=194  Identities=20%  Similarity=0.173  Sum_probs=164.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|+||||||++|||+++|+.|+++|++|++++|+++.++++.    ++  +.++.+++||++|+++++++++++.++||+
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~----~~--~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~   75 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFA----KE--RPNLFYFHGDVADPLTLKKFVEYAMEKLQR   75 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----TT--CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh--cCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            489999999999999999999999999999999987765443    33  457889999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCccccC
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLDLSL  273 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~al~~  273 (328)
                      ||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+|+++       +|+.+..+.++...|++||+++. 
T Consensus        76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~~~~~~Y~asKaal~-  154 (247)
T 3ged_A           76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEPDSEAYASAKGGIV-  154 (247)
T ss_dssp             CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCCTTCHHHHHHHHHHH-
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCCCCCHHHHHHHHHHH-
Confidence            99999999985  567899999999999999999999999999999875       77788888899999999999999 


Q ss_pred             CCCccc------cccCccCCCCcccCCHHHHHHHHHHHHHHH-HHHHhcccccccccccccC
Q psy4246         274 PVSGSY------FNNCCRCPPSKAAQDEALATKLWKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       274 ~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      +++...      .+++|.+.|+...++...  ..   .++.. ..+++|+++|+|||++++|
T Consensus       155 ~ltk~lA~ela~~IrVN~I~PG~i~t~~~~--~~---~~~~~~~~Pl~R~g~pediA~~v~f  211 (247)
T 3ged_A          155 ALTHALAMSLGPDVLVNCIAPGWINVTEQQ--EF---TQEDCAAIPAGKVGTPKDISNMVLF  211 (247)
T ss_dssp             HHHHHHHHHHTTTSEEEEEEECSBCCCC-----C---CHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEEEecCcCCCCCcH--HH---HHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            877321      467788888877765431  11   11222 2359999999999999987

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=100.00  E-value=8.7e-38  Score=278.06  Aligned_cols=197  Identities=17%  Similarity=0.193  Sum_probs=161.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|+.|+++|++|++++|+.++.            ..+..++++|++++++++++++++.+
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~~   74 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG------------LPEELFVEADLTTKEGCAIVAEATRQ   74 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT------------SCTTTEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC------------CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999975421            12345789999999999999999999


Q ss_pred             hcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccc-cchhhh
Q psy4246         199 KFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGA-ATSIYC  265 (328)
Q Consensus       199 ~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~-~~~~y~  265 (328)
                      +||+||+||||||+.    +++.++++++|+++|++|+.|+|+++|+++|+|+++        +|+.+..+.+ +...|+
T Consensus        75 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~~~~~Y~  154 (261)
T 4h15_A           75 RLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPESTTAYA  154 (261)
T ss_dssp             HTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTTCHHHH
T ss_pred             HcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCCccHHHH
Confidence            999999999999974    356789999999999999999999999999999876        5666666665 578899


Q ss_pred             ccCccccCCCC-------ccccccCccCCCCcccCCHHHH--HHHHH-------HHHHHHH-----HHHhcccccccccc
Q psy4246         266 ATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALA--TKLWK-------LSEEMIQ-----SVVSTWLEETTERG  324 (328)
Q Consensus       266 ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~-----~~~~r~g~p~dia~  324 (328)
                      ++|+|+. +++       +.+.+++|.+.|++..++....  ....+       ..++...     .+++|+++|||||+
T Consensus       155 asKaal~-~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peevA~  233 (261)
T 4h15_A          155 AAKAALS-TYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPLGRPAKPEEVAN  233 (261)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTTSSCBCHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCCCCCcCHHHHHH
Confidence            9999999 887       5577888988888887764321  11111       1112222     24899999999999


Q ss_pred             cccC
Q psy4246         325 EVVF  328 (328)
Q Consensus       325 ~v~F  328 (328)
                      +|+|
T Consensus       234 ~v~f  237 (261)
T 4h15_A          234 LIAF  237 (261)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9987

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=100.00  E-value=2.2e-37  Score=275.38  Aligned_cols=209  Identities=10%  Similarity=0.090  Sum_probs=174.5

Q ss_pred             CCCCCCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       118 ~~~l~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +++|+||++|||||+|  |||+++|+.|+++|++|++++|+++.++++.+++.+.. +.++.+++||++|++++++++++
T Consensus         1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHH
Confidence            4689999999999875  99999999999999999999999988888877776543 56899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchh
Q psy4246         196 YQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSI  263 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~  263 (328)
                      +.++||+||+||||||+.      .++.+.+.++|..++++|+.+++++++.+.++|++.      +|+.+..+.++...
T Consensus        80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~~~~~~  159 (256)
T 4fs3_A           80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNV  159 (256)
T ss_dssp             HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCCTTTHH
T ss_pred             HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCcccchh
Confidence            999999999999999974      344678889999999999999999999999998876      55577778889999


Q ss_pred             hhccCccccCCCC-------ccccccCccCCCCcccCCHHHHH-HHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALAT-KLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+++|+++. +++       +.+.+++|.+.|++..++..... ...+..+++.+. +++|+++|||||++++|
T Consensus       160 Y~asKaal~-~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~peevA~~v~f  232 (256)
T 4fs3_A          160 MGVAKASLE-ANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLKRNVDQVEVGKTAAY  232 (256)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             hHHHHHHHH-HHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999999999 877       55778889888887777532211 011222233333 49999999999999987

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=100.00  E-value=4.6e-35  Score=261.69  Aligned_cols=210  Identities=19%  Similarity=0.178  Sum_probs=174.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++....++.++.++.||++|+++++++++++.
T Consensus         3 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (265)
T 3lf2_A            3 PYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE   82 (265)
T ss_dssp             CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999888888775555679999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++
T Consensus        83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  162 (265)
T 3lf2_A           83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAA  162 (265)
T ss_dssp             HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCTTBHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCCCchhhHHH
Confidence            9999999999999985  556789999999999999999999999999999875        666777788889999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHH--------HHH-HHHHHHH---HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK--------LWK-LSEEMIQ---SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~---~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ +++.       .+..+++.+.|+...++......        .++ ..+....   .+++|+++|+|||.+++|
T Consensus       163 Kaa~~-~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~f  241 (265)
T 3lf2_A          163 RAGVK-NLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILF  241 (265)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCCCcCCCcCHHHHHHHHHH
Confidence            99999 7663       34567777777777665322110        011 1111222   358999999999999876

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=100.00  E-value=8.3e-35  Score=258.74  Aligned_cols=207  Identities=18%  Similarity=0.209  Sum_probs=171.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.
T Consensus         7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~   84 (256)
T 3gaf_A            7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA--GGKAIGLECNVTDEQHREAVIKAAL   84 (256)
T ss_dssp             TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999888888888765  5689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +++|++|+||||||+.  .++ +.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++
T Consensus        85 ~~~g~id~lv~nAg~~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  163 (256)
T 3gaf_A           85 DQFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSS  163 (256)
T ss_dssp             HHHSCCCEEEECCCCCCCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCTTCHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCC-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCCCchHHHHH
Confidence            9999999999999985  334 88999999999999999999999999999874        666777788889999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ +++.       .+..+++.+.|+...++........+..+.+.. .+++|+++|+|||.+++|
T Consensus       164 Kaa~~-~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~  231 (256)
T 3gaf_A          164 KAAVN-HLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALF  231 (256)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99999 7763       344667777777766653221101111122221 238999999999998876

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=100.00  E-value=1.4e-34  Score=259.52  Aligned_cols=207  Identities=16%  Similarity=0.209  Sum_probs=173.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.+
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~   99 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV--GHDAEAVAFDVTSESEIIEAFARLDE   99 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999998888888765  56899999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|
T Consensus       100 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asK  179 (271)
T 4ibo_A          100 QGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYTVAK  179 (271)
T ss_dssp             HTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHH
T ss_pred             HCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCCCchhHHHHH
Confidence            999999999999985  556788999999999999999999999999999874        6667777888899999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++.       .+..+++.+.|+...++....... .+..+.... .+++|+++|+|||.+++|
T Consensus       180 aa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~  247 (271)
T 4ibo_A          180 GGIK-MLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVF  247 (271)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTTCSCBCGGGGHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999 7663       345677777787776653221110 111222222 238999999999999876

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=100.00  E-value=7.8e-35  Score=260.94  Aligned_cols=207  Identities=21%  Similarity=0.221  Sum_probs=170.8

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |..+|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|++|.++++++++++
T Consensus        22 m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   99 (270)
T 3ftp_A           22 MDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA--GLEGRGAVLNVNDATAVDALVEST   99 (270)
T ss_dssp             -CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEEeCCCHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999888888887765  567889999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      .+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.++        ||+.+..+.++...|++
T Consensus       100 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  179 (270)
T 3ftp_A          100 LKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAA  179 (270)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCchhHHH
Confidence            99999999999999985  456788999999999999999999999999999764        66667777888999999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHH-HHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKL-SEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ +++..       +..+++.+.|+...++..  ..+... ...... .+++|+++|+|||.+++|
T Consensus       180 sKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~--~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  247 (270)
T 3ftp_A          180 AKAGVA-GMTRALAREIGSRGITVNCVAPGFIDTDMT--KGLPQEQQTALKTQIPLGRLGSPEDIAHAVAF  247 (270)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSHHH--HHSCHHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHhhhCeEEEEEEeCCCcCcch--hhcCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999998 76632       345667677776655432  222111 111111 237999999999998875

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=100.00  E-value=1.3e-34  Score=258.43  Aligned_cols=208  Identities=20%  Similarity=0.192  Sum_probs=171.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.... +.++.++.+|++|+++++++++++.
T Consensus         5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (262)
T 3pk0_A            5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAV   83 (262)
T ss_dssp             TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999999999988888886642 3689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee-cccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR-QQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~-~~~~~~~~y~a  266 (328)
                      +++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+. .+.++...|++
T Consensus        84 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~a  163 (262)
T 3pk0_A           84 EEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGA  163 (262)
T ss_dssp             HHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCTTCHHHHH
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCCChhhHH
Confidence            9999999999999985  566789999999999999999999999999999865        555554 56678899999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++.+.|+...++.... ...+..+.+... +++|+++|+|||.+++|
T Consensus       164 sK~a~~-~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~-~~~~~~~~~~~~~p~~r~~~p~dva~~v~~  231 (262)
T 3pk0_A          164 TKAAQL-GFMRTAAIELAPHKITVNAIMPGNIMTEGLLE-NGEEYIASMARSIPAGALGTPEDIGHLAAF  231 (262)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECSBCCHHHHT-TCHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHhhCcEEEEEEeCcCcCccccc-cCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999999 77733       45667777777776653221 111112222222 38999999999998876

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=100.00  E-value=3e-34  Score=258.03  Aligned_cols=209  Identities=17%  Similarity=0.235  Sum_probs=172.8

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ...|+||++|||||++|||+++|++|+++|++|++++|+.+.+++...++.... +.++.++.+|++|+++++++++++.
T Consensus        22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~  100 (277)
T 4fc7_A           22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQAL  100 (277)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            346899999999999999999999999999999999999988888887776543 5689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.        ||+.+..+.++...|+++
T Consensus       101 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  180 (277)
T 4fc7_A          101 KEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSA  180 (277)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCTTCHHHHHH
T ss_pred             HHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCcHHHHHH
Confidence            9999999999999975  456788999999999999999999999999998764        666667777888999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHH--HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK--LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ +++.       .+..+++.+.|+...++......  .....+.... .+++|+++|+|||.+++|
T Consensus       181 Kaa~~-~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~f  250 (277)
T 4fc7_A          181 KAAVD-AMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLY  250 (277)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCCCCCcCHHHHHHHHHH
Confidence            99999 7763       34567777888887776433221  0111122222 248999999999999876

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=100.00  E-value=1.3e-34  Score=256.34  Aligned_cols=204  Identities=22%  Similarity=0.211  Sum_probs=166.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.     .++.++.+|++|+++++++++++.
T Consensus         4 ~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~   78 (248)
T 3op4_A            4 FMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG-----DNGKGMALNVTNPESIEAVLKAIT   78 (248)
T ss_dssp             TTCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----ccceEEEEeCCCHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999999988887777663     357789999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++
T Consensus        79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~as  158 (248)
T 3op4_A           79 DEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAA  158 (248)
T ss_dssp             HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHH
Confidence            9999999999999985  456788999999999999999999999999999764        666777788889999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHH-HHHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ +++.       .+..+++.+.|+...++..... ..+..+... ..+++|+++|+|||.+++|
T Consensus       159 K~a~~-~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~p~~r~~~p~dva~~v~~  225 (248)
T 3op4_A          159 KAGVI-GFTKSMAREVASRGVTVNTVAPGFIETDMTKAL-NDEQRTATLAQVPAGRLGDPREIASAVAF  225 (248)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTS-CHHHHHHHHHTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhc-CHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99998 7763       3446677777776666532110 001111111 2248999999999998875

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=100.00  E-value=7.2e-34  Score=253.79  Aligned_cols=207  Identities=14%  Similarity=0.192  Sum_probs=171.2

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |...|+||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...  +.++.++.+|++|+++++++++++
T Consensus         5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~   82 (264)
T 3ucx_A            5 MGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT--GRRALSVGTDITDDAQVAHLVDET   82 (264)
T ss_dssp             --CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            344689999999999999999999999999999999999999998888888765  568999999999999999999999


Q ss_pred             HHhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhc
Q psy4246         197 QKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~a  266 (328)
                      .+++|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|.++       ||+.+..+.++...|++
T Consensus        83 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  162 (264)
T 3ucx_A           83 MKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQAKYGAYKM  162 (264)
T ss_dssp             HHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCCCTTCHHHHH
T ss_pred             HHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccCCCccHHHHH
Confidence            99999999999999974   456788999999999999999999999999999874       66677778888999999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH------------HHHHHHH-HHHhcccccccccccc
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK------------LSEEMIQ-SVVSTWLEETTERGEV  326 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~r~g~p~dia~~v  326 (328)
                      +|++++ .++.       .+..+++.+.|+...++...  ..+.            ..+.... .+++|+++|+|||.++
T Consensus       163 sKaa~~-~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v  239 (264)
T 3ucx_A          163 AKSALL-AMSQTLATELGEKGIRVNSVLPGYIWGGTLK--SYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAI  239 (264)
T ss_dssp             HHHHHH-HHHHHHHHHHHTTTCEEEEEEESSCBSHHHH--HHHHHHHHHTTCCHHHHHHHHHTTSSSSSCCBHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhCccCeEEEEEecCccccccHH--HHHHhhhhhcCCCHHHHHHHHhccCCcccCCCHHHHHHHH
Confidence            999999 7663       34466777777776655322  2211            1111111 1279999999999998


Q ss_pred             cC
Q psy4246         327 VF  328 (328)
Q Consensus       327 ~F  328 (328)
                      +|
T Consensus       240 ~~  241 (264)
T 3ucx_A          240 LF  241 (264)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.7e-34  Score=256.86  Aligned_cols=206  Identities=21%  Similarity=0.289  Sum_probs=170.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.... +.++.++.+|++|+++++++++++.+
T Consensus        16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   94 (266)
T 4egf_A           16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAE   94 (266)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999888888876532 56899999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      ++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.++         ||+.+..+.++...|+++
T Consensus        95 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  174 (266)
T 4egf_A           95 AFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTS  174 (266)
T ss_dssp             HHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCCCChHHHHH
Confidence            999999999999985  456788999999999999999999999999999863         566667777889999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHHHH---HHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLW---KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++.       .+..+++.+.|+...++..  ...+   ...+.... .+++|+++|+|||.+++|
T Consensus       175 K~a~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~--~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~  243 (266)
T 4egf_A          175 KAGLV-MATKVLARELGPHGIRANSVCPTVVLTEMG--QRVWGDEAKSAPMIARIPLGRFAVPHEVSDAVVW  243 (266)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEESCBCSHHH--HHHTCSHHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhhhCeEEEEEEeCCCcCchh--hhhccChHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999 7663       3445677777776665532  2221   11122222 238999999999999876

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=100.00  E-value=3.7e-34  Score=259.47  Aligned_cols=208  Identities=18%  Similarity=0.138  Sum_probs=170.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++|+||++|||||++|||+++|++|+++|++|++++|+.+.+++...++.... ..++.++.||++|+++++++++++.
T Consensus        36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~  114 (293)
T 3rih_A           36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVV  114 (293)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999888888886542 2589999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee-cccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR-QQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~-~~~~~~~~y~a  266 (328)
                      +++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+. .+.++...|++
T Consensus       115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~~~~~~Y~a  194 (293)
T 3rih_A          115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGA  194 (293)
T ss_dssp             HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBCTTCHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCCCCCHHHHH
Confidence            9999999999999985  556789999999999999999999999999999875        555554 56678899999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++.       .+..+++.+.|+...++.... ...+..+.... .+++|+++|+|||.+++|
T Consensus       195 sKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~-~~~~~~~~~~~~~p~~r~~~p~dvA~~v~f  262 (293)
T 3rih_A          195 SKAAQL-GFMRTAAIELAPRGVTVNAILPGNILTEGLVD-MGEEYISGMARSIPMGMLGSPVDIGHLAAF  262 (293)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECSBCCHHHHH-TCHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHhhhCeEEEEEecCCCcCcchhh-ccHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999999 7763       345667777777776643221 11112222222 238999999999999876

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8.1e-34  Score=255.23  Aligned_cols=204  Identities=24%  Similarity=0.264  Sum_probs=168.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|+||++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|++|+++++++++++.+
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~   99 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAACRVDVSDEQQIIAMVDACVA   99 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCcceEEEecCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998888777666     55788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|
T Consensus       100 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asK  179 (277)
T 3gvc_A          100 AFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSK  179 (277)
T ss_dssp             HHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCchhHHHHH
Confidence            999999999999985  456789999999999999999999999999999765        6777778888899999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHHHH--H-H----HHHHHHHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKL--W-K----LSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++.       .+..+++.+.|+...++.......  . .    ........+++|+++|+|||.+++|
T Consensus       180 aa~~-~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~  252 (277)
T 3gvc_A          180 AGII-QLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVF  252 (277)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC------CCHHHHHHHHHSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhhHHHHhhhhhhhccccCCCCHHHHHHHHHH
Confidence            9999 7663       345667777777766653221100  0 0    1122224468999999999999876

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=100.00  E-value=3.2e-34  Score=256.38  Aligned_cols=203  Identities=24%  Similarity=0.269  Sum_probs=160.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++|+||++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.
T Consensus        22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~   96 (266)
T 3grp_A           22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSANLSDRKSIKQLAEVAE   96 (266)
T ss_dssp             TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEeecCCHHHHHHHHHHHH
Confidence            45799999999999999999999999999999999999998887776654     5689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++
T Consensus        97 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~as  176 (266)
T 3grp_A           97 REMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAA  176 (266)
T ss_dssp             HHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------CHHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCCCchhHHHH
Confidence            9999999999999985  456788999999999999999999999999999764        666777778889999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH-HHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ +++.       .+..+++.+.|+...++..  ..+.+ ..+.... .+++|+++|+|||.+++|
T Consensus       177 Kaa~~-~~~~~la~e~~~~gI~vn~v~PG~v~t~~~--~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~  243 (266)
T 3grp_A          177 KAGLI-GFSKALAQEIASRNITVNCIAPGFIKSAMT--DKLNEKQKEAIMAMIPMKRMGIGEEIAFATVY  243 (266)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSHHH--HTCCHHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhhCcEEEEEeeCcCCCchh--hccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99998 7663       3445667777776655432  21111 1112211 238999999999999876

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=100.00  E-value=6.5e-34  Score=252.43  Aligned_cols=205  Identities=15%  Similarity=0.114  Sum_probs=157.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...  +.++.++.||++|+++++++++++.
T Consensus         2 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (252)
T 3h7a_A            2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDEVTAFLNAAD   79 (252)
T ss_dssp             ---CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999888888766  5689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +. |++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++
T Consensus        80 ~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  158 (252)
T 3h7a_A           80 AH-APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASA  158 (252)
T ss_dssp             HH-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTTCHHHHHH
T ss_pred             hh-CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCCCCccHHHH
Confidence            99 9999999999985  456788999999999999999999999999999874        666777778889999999


Q ss_pred             CccccCCCCc-------cccccC-ccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNC-CRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |++++ +++.       .+..++ +.+.|+...++..... ..+..+..... +++ +++|+|+|.+++|
T Consensus       159 Kaa~~-~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~-~~~pedvA~~~~~  225 (252)
T 3h7a_A          159 KFGLR-AVAQSMARELMPKNIHVAHLIIDSGVDTAWVRER-REQMFGKDALANPDL-LMPPAAVAGAYWQ  225 (252)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEEC-----------------------------CCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhcCCEEEEEecCCccCChhhhcc-chhhhhhhhhcCCcc-CCCHHHHHHHHHH
Confidence            99998 7663       234556 6666776655432211 11111122222 245 9999999998875

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=100.00  E-value=2.2e-34  Score=254.75  Aligned_cols=203  Identities=21%  Similarity=0.176  Sum_probs=167.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|+||++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|++|+++++++++++.+
T Consensus         2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   76 (247)
T 3rwb_A            2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAADISDPGSVKALFAEIQA   76 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999998888777666     55789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.         ||..+..+.++...|+++
T Consensus        77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  156 (247)
T 3rwb_A           77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAA  156 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTTCHHHHHH
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCCCchhhHHH
Confidence            999999999999985  456788999999999999999999999999999864         455566677888999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHH--HHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS--VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~g~p~dia~~v~F  328 (328)
                      |++++ +++.       .+..+++.+.|+...++..... ...........  +++|+++|+|||.+++|
T Consensus       157 Kaa~~-~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~~~r~~~pedva~~v~~  224 (247)
T 3rwb_A          157 KGGVI-GFTRALATELGKYNITANAVTPGLIESDGVKAS-PHNEAFGFVEMLQAMKGKGQPEHIADVVSF  224 (247)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS-GGGGGHHHHHHHSSSCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhcCeEEEEEeeCcCcCcccccc-ChhHHHHHHhcccccCCCcCHHHHHHHHHH
Confidence            99999 7763       3456777777777766432211 01111122222  37899999999999876

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=100.00  E-value=9.1e-34  Score=254.92  Aligned_cols=206  Identities=20%  Similarity=0.223  Sum_probs=168.1

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|++|.++++++++++
T Consensus        21 ~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   95 (277)
T 4dqx_A           21 QSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGVRVDVSSAKDAESMVEKT   95 (277)
T ss_dssp             -CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999998887776664     567899999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      .+++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|++
T Consensus        96 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  175 (277)
T 4dqx_A           96 TAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVA  175 (277)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCTTBHHHHH
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCCCChhHHH
Confidence            99999999999999985  456788999999999999999999999999999874        66677777888999999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-----HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-----LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ +++..       +..+++.+.|+...++......     .......... .+++|+++|+|||.+++|
T Consensus       176 sKaa~~-~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~  249 (277)
T 4dqx_A          176 SKGAIS-SLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAEEIAEAMLF  249 (277)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTSTTCSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcCcccCCcCHHHHHHHHHH
Confidence            999999 77632       3456677777776654321110     0111111111 237999999999998876

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=100.00  E-value=1.1e-33  Score=254.70  Aligned_cols=211  Identities=16%  Similarity=0.154  Sum_probs=171.3

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCC-CCeEEEEEcccCCHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-SAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      |.++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++..... +.++.++.+|++|++++++++++
T Consensus         5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   84 (281)
T 3svt_A            5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDA   84 (281)
T ss_dssp             ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999998888888876532 23899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhh
Q psy4246         196 YQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIY  264 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y  264 (328)
                      +.+++|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|.++        ||+.+..+.++...|
T Consensus        85 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  164 (281)
T 3svt_A           85 VTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAY  164 (281)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTCTHH
T ss_pred             HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCCCChhH
Confidence            999999999999999973   456788999999999999999999999999999874        666677777888999


Q ss_pred             hccCccccCCCCc-------cccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++.       .+..+++.+.|+...++...... ..+..+.... .+++|+++|+|||.+++|
T Consensus       165 ~asK~a~~-~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~  236 (281)
T 3svt_A          165 GVTKSAVD-HLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEVEDVANMAMF  236 (281)
T ss_dssp             HHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99999999 7763       33466777777777665322110 0111222222 238999999999998875

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=100.00  E-value=4.5e-34  Score=255.89  Aligned_cols=205  Identities=20%  Similarity=0.274  Sum_probs=167.5

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ..++|+||++|||||++|||+++|++|+++|++|++++| +.+.++++.+++...  +.++.++.+|++|.+++++++++
T Consensus        22 ~~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~v~~~~~~   99 (269)
T 4dmm_A           22 TALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA--GGEAFAVKADVSQESEVEALFAA   99 (269)
T ss_dssp             --CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHH
Confidence            346799999999999999999999999999999999988 666677777777654  56899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhh
Q psy4246         196 YQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYC  265 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~  265 (328)
                      +.+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+
T Consensus       100 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  179 (269)
T 4dmm_A          100 VIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYS  179 (269)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTTCHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCchhHH
Confidence            999999999999999986  445788999999999999999999999999999874        6666677778899999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ +++.       .+..+++.+.|+...++.....  ..  +.... .+++|+++|+|||++++|
T Consensus       180 asK~a~~-~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--~~--~~~~~~~p~~r~~~~~dvA~~v~~  245 (269)
T 4dmm_A          180 AAKAGVI-GLTKTVAKELASRGITVNAVAPGFIATDMTSEL--AA--EKLLEVIPLGRYGEAAEVAGVVRF  245 (269)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHH--HH--HHHGGGCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHhhhCcEEEEEEECCCcCcccccc--cH--HHHHhcCCCCCCCCHHHHHHHHHH
Confidence            9999998 7663       3445667777776666532111  11  12222 248999999999998876

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=100.00  E-value=1.6e-33  Score=250.84  Aligned_cols=206  Identities=21%  Similarity=0.271  Sum_probs=167.7

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |+.+|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|++|+++++++++++
T Consensus         2 mm~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~   76 (259)
T 4e6p_A            2 MMKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQMDVTRQDSIDAAIAAT   76 (259)
T ss_dssp             --CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCCceEEEeeCCCHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999998888777766     457889999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhh
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYC  265 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~  265 (328)
                      .+++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.++         ||+.+..+.++...|+
T Consensus        77 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  156 (259)
T 4e6p_A           77 VEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYC  156 (259)
T ss_dssp             HHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHH
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCCCChHHH
Confidence            99999999999999985  456788999999999999999999999999999763         6666777788899999


Q ss_pred             ccCccccCCCCcc-------ccccCccCCCCcccCCHHHHH-HHH---------HHHHHHHH-HHHhccccccccccccc
Q psy4246         266 ATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT-KLW---------KLSEEMIQ-SVVSTWLEETTERGEVV  327 (328)
Q Consensus       266 ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~-~~~~r~g~p~dia~~v~  327 (328)
                      ++|++++ .++..       +..+++.+.|+...++..... .+.         +..+.... .+++|+++|+|||.+++
T Consensus       157 asK~a~~-~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~  235 (259)
T 4e6p_A          157 ATKAAVI-SLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAI  235 (259)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhhhcCCEEEEEEECCCccchhhhhhhhhhhhccCChHHHHHHHhccCCCCCCcCHHHHHHHHH
Confidence            9999999 77633       346677777877766532211 011         11111111 23899999999999887


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       236 ~  236 (259)
T 4e6p_A          236 F  236 (259)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.4e-34  Score=257.32  Aligned_cols=208  Identities=20%  Similarity=0.236  Sum_probs=160.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee-CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      .+.++||++|||||++|||+++|++|+++|++|++++ |+.+.++++.+++...  +.++.++.+|++|+++++++++++
T Consensus        22 ~m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~   99 (267)
T 3u5t_A           22 SMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA--GGKALTAQADVSDPAAVRRLFATA   99 (267)
T ss_dssp             -----CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHH
Confidence            3567899999999999999999999999999999984 5666667776666654  568999999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccC
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask  268 (328)
                      .+.+|+||+||||||+.  .++.+.+.++|+++|++|+.|+++++++++|+|++.      ||..+..+.++...|+++|
T Consensus       100 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  179 (267)
T 3u5t_A          100 EEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHPSYGIYAAAK  179 (267)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCTTCHHHHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCCCchHHHHHH
Confidence            99999999999999985  456788999999999999999999999999999775      4555566677889999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ +++.       .+..+++.+.|+...++........+..+.... .+++|+++|+|||.+++|
T Consensus       180 aa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  246 (267)
T 3u5t_A          180 AGVE-AMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAKLAPLERLGTPQDIAGAVAF  246 (267)
T ss_dssp             HHHH-HHHHHHHHHTTTSCCEEEEEEECCBC-----------CHHHHHTSSTTCSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999 7663       334566777777776654322111111112211 237999999999999876

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=100.00  E-value=5.5e-34  Score=253.30  Aligned_cols=204  Identities=17%  Similarity=0.227  Sum_probs=166.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|+||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++     +.++.++.+|++|+++++++++++.+
T Consensus         4 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (255)
T 4eso_A            4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQ   78 (255)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998887777665     45789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      .+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...|+++|++
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  158 (255)
T 4eso_A           79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGMSVYSASKAA  158 (255)
T ss_dssp             HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCTTBHHHHHHHHH
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCchHHHHHHHH
Confidence            999999999999985  456788999999999999999999999999998765      666777778889999999999


Q ss_pred             ccCCCCc-------cccccCccCCCCcccCCHH----HHHHHH-HHHHHHHH-HHHhcccccccccccccC
Q psy4246         271 LSLPVSG-------SYFNNCCRCPPSKAAQDEA----LATKLW-KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g-------~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++ .++.       .+..+++.+.|+...++..    ...... ...+.... .+++|+++|+|||.+++|
T Consensus       159 ~~-~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  228 (255)
T 4eso_A          159 LV-SFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLF  228 (255)
T ss_dssp             HH-HHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCCCCCcCHHHHHHHHHH
Confidence            98 7663       3455667777776655421    001111 11111111 248999999999999876

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=100.00  E-value=6.7e-34  Score=254.95  Aligned_cols=206  Identities=22%  Similarity=0.210  Sum_probs=166.9

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |..+|+||++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|++|+++++++++++
T Consensus         5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   79 (271)
T 3tzq_B            5 MTAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHVVDLTNEVSVRALIDFT   79 (271)
T ss_dssp             --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCCeEEEECCCCCHHHHHHHHHHH
Confidence            445789999999999999999999999999999999999998888777666     457889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCC----CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhh
Q psy4246         197 QKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIY  264 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y  264 (328)
                      .+++|++|+||||||+..    ++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|
T Consensus        80 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y  159 (271)
T 3tzq_B           80 IDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAY  159 (271)
T ss_dssp             HHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBCSSCHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCCCCChHH
Confidence            999999999999999862    24578999999999999999999999999999875        666777778889999


Q ss_pred             hccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++.       .+..+++.+.|+...++........+..+.... .+++|+++|+|||.+++|
T Consensus       160 ~asKaa~~-~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~  230 (271)
T 3tzq_B          160 ACTKAAIE-TLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAGRIGEPHEIAELVCF  230 (271)
T ss_dssp             HHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999999 7663       345667777777666653211100111111211 237999999999999876

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=100.00  E-value=8.9e-34  Score=254.85  Aligned_cols=206  Identities=17%  Similarity=0.208  Sum_probs=167.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|+||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...  +.++.++.||++|+++++++++++.
T Consensus        27 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~  104 (276)
T 3r1i_A           27 LFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--GGKALPIRCDVTQPDQVRGMLDQMT  104 (276)
T ss_dssp             GGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999988888888765  5688999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceeccc--ccchhh
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQG--AATSIY  264 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~--~~~~~y  264 (328)
                      +++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.++         +|+.+..+.  .+...|
T Consensus       105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~~~~~~Y  184 (276)
T 3r1i_A          105 GELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHY  184 (276)
T ss_dssp             HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCSSCCHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCCCCcchH
Confidence            9999999999999985  456788999999999999999999999999999874         333333332  356889


Q ss_pred             hccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++.       .+..+++.+.|+...++....  ..+..+.... .+++|+++|+|||.+++|
T Consensus       185 ~asKaa~~-~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~--~~~~~~~~~~~~p~~r~~~pedvA~~v~f  253 (276)
T 3r1i_A          185 CTSKAAVV-HLTKAMAVELAPHQIRVNSVSPGYIRTELVEP--LADYHALWEPKIPLGRMGRPEELTGLYLY  253 (276)
T ss_dssp             HHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCSTTTGG--GGGGHHHHGGGSTTSSCBCGGGSHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc--chHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999999 7663       345667777777766653211  1111111111 247999999999999876

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.9e-34  Score=257.68  Aligned_cols=207  Identities=17%  Similarity=0.158  Sum_probs=168.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|+||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...  +.++.++.+|++|+++++++++++.+
T Consensus         4 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (280)
T 3tox_A            4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAVR   81 (280)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999988888887653  56899999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee-cccccchhhhc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR-QQGAATSIYCA  266 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~-~~~~~~~~y~a  266 (328)
                      ++|+||+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+. .+.++...|++
T Consensus        82 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~a  161 (280)
T 3tox_A           82 RFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAA  161 (280)
T ss_dssp             HHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCTTCHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCCCchhHHH
Confidence            999999999999975   456788999999999999999999999999999874        555555 56677899999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHH---HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT---KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++.+.|+...++.....   ...+....... .+++|+++|+|||.+++|
T Consensus       162 sKaa~~-~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  233 (280)
T 3tox_A          162 SKAGLI-GLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALY  233 (280)
T ss_dssp             HHHHHH-HHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCccCCCcCHHHHHHHHHH
Confidence            999999 76632       345677777776665532110   00111111111 237999999999999876

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.7e-33  Score=253.50  Aligned_cols=207  Identities=20%  Similarity=0.218  Sum_probs=157.2

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      |+.++++|++|||||++|||+++|+.|+++|++|++++| +.+.+++..+++...  +.++.++.+|++|++++++++++
T Consensus        23 mm~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~  100 (280)
T 4da9_A           23 MMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL--GARVIFLRADLADLSSHQATVDA  100 (280)
T ss_dssp             CCSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT--TCCEEEEECCTTSGGGHHHHHHH
T ss_pred             hhhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHH
Confidence            345789999999999999999999999999999999995 777777777777654  56899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----------cccceeccccc
Q psy4246         196 YQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----------AKLFARQQGAA  260 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----------ss~~~~~~~~~  260 (328)
                      +.+++|+||+||||||+.    .++.+.+.++|++++++|+.|+++++++++|+|.++           ||+.+..+.++
T Consensus       101 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~  180 (280)
T 4da9_A          101 VVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPE  180 (280)
T ss_dssp             HHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------C
T ss_pred             HHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCC
Confidence            999999999999999983    456788999999999999999999999999999762           55566777788


Q ss_pred             chhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH-HHHHHH--HHHHhcccccccccccccC
Q psy4246         261 TSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK-LSEEMI--QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       261 ~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~r~g~p~dia~~v~F  328 (328)
                      ...|+++|++++ .++.       .+..+++.+.|+...++....  ... ..+...  ..+++|+++|+|||.+++|
T Consensus       181 ~~~Y~asKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  255 (280)
T 4da9_A          181 RLDYCMSKAGLA-AFSQGLALRLAETGIAVFEVRPGIIRSDMTAA--VSGKYDGLIESGLVPMRRWGEPEDIGNIVAG  255 (280)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CCBCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHH-HHHHHHHHHHHHhCcEEEEEeecCCcCCchhh--cchhHHHHHhhcCCCcCCcCCHHHHHHHHHH
Confidence            899999999998 7663       345667777777776654221  111 111111  2358999999999999876

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=100.00  E-value=3.5e-33  Score=250.82  Aligned_cols=207  Identities=16%  Similarity=0.128  Sum_probs=169.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++++.
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~  105 (275)
T 4imr_A           28 IFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS--GGTAQELAGDLSEAGAGTDLIERAE  105 (275)
T ss_dssp             HHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT--TCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEecCCCHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999998888888888665  5689999999999999999999998


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +. +++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.+....|+++
T Consensus       106 ~~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~as  184 (275)
T 4imr_A          106 AI-APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKSVVTAYAAT  184 (275)
T ss_dssp             HH-SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred             Hh-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCchhhHHH
Confidence            87 9999999999985  456788999999999999999999999999999764        666666677777889999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHH--HHHHHHHHHHH--HHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK--LWKLSEEMIQS--VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++.       .+..+++.+.|+...++......  ..+..+.....  +++|+++|+|||.+++|
T Consensus       185 Kaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~f  255 (275)
T 4imr_A          185 KAAQH-NLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNWMGRAGRPEEMVGAALF  255 (275)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHSTTCSCBCGGGGHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcCccCCCcCHHHHHHHHHH
Confidence            99999 7663       33566777777777665432211  11122222222  48999999999999876

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=100.00  E-value=1.9e-33  Score=250.22  Aligned_cols=205  Identities=18%  Similarity=0.164  Sum_probs=167.2

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++||++|||||++|||+++|++|+++|++|+++ +|+.+.+++..+++...  +.++.++.+|++|+++++++++++.++
T Consensus         2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL--GVKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999997 89988888888887654  568999999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|+
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  159 (258)
T 3oid_A           80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKA  159 (258)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCTTCHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCCCcHHHHHHHH
Confidence            99999999999974  556789999999999999999999999999999875        66667777788999999999


Q ss_pred             cccCCCCc-------cccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ +++.       .+..+++.+.|+...++...... ..+..+.... .+++|+++|+|||.+++|
T Consensus       160 a~~-~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~  226 (258)
T 3oid_A          160 ALE-ALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEF  226 (258)
T ss_dssp             HHH-HHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCTTSSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999 7663       33456677777766654321100 0111122222 248999999999999876

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=100.00  E-value=3e-33  Score=254.23  Aligned_cols=209  Identities=14%  Similarity=0.158  Sum_probs=168.0

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC------------hhHHHHHHHHHHhhCCCCeEEEEEcccC
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS------------LDKANDAISKILTEKPSAQCIAMELNLC  184 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~------------~~~~~~~~~~l~~~~~~~~~~~~~~Dls  184 (328)
                      |..+|+||++|||||++|||+++|+.|+++|++|++++|+            .+.+++...++...  +.++.++.+|++
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   99 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--GRRIIASQVDVR   99 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc--CCceEEEECCCC
Confidence            4567999999999999999999999999999999999987            66777777777655  568999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCccEEEEccccCC---CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------ccc
Q psy4246         185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKL  252 (328)
Q Consensus       185 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~  252 (328)
                      |.++++++++++.+++|+||+||||||+..   ++.+++.++|++++++|+.|+++++++++|+|.++         ||+
T Consensus       100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~  179 (299)
T 3t7c_A          100 DFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSI  179 (299)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCG
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence            999999999999999999999999999852   36788999999999999999999999999998653         666


Q ss_pred             ceecccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH------------HHHH---HHH
Q psy4246         253 FARQQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK------------LSEE---MIQ  310 (328)
Q Consensus       253 ~~~~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~---~~~  310 (328)
                      .+..+.++...|+++|++++ +++.       .+..+++.+.|+...++.......+.            ....   ...
T Consensus       180 ~~~~~~~~~~~Y~asKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (299)
T 3t7c_A          180 GGLRGAENIGNYIASKHGLH-GLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMH  258 (299)
T ss_dssp             GGTSCCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHHHS
T ss_pred             hhccCCCCcchHHHHHHHHH-HHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHHHhhhhc
Confidence            77778888999999999998 7663       34566777777776665321110000            0000   110


Q ss_pred             HHHhcccccccccccccC
Q psy4246         311 SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       311 ~~~~r~g~p~dia~~v~F  328 (328)
                      ...+|+++|+|||.+++|
T Consensus       259 ~~p~r~~~pedvA~~v~f  276 (299)
T 3t7c_A          259 VLPIPYVEPADISNAILF  276 (299)
T ss_dssp             SSSCSCBCHHHHHHHHHH
T ss_pred             ccCcCCCCHHHHHHHHHH
Confidence            012789999999999876

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=100.00  E-value=9.2e-34  Score=252.12  Aligned_cols=206  Identities=17%  Similarity=0.246  Sum_probs=167.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|+||++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.++
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF--PGQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS--TTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999988888877543  568999999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask  268 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.         ||+.+..+.++...|+++|
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  160 (257)
T 3imf_A           81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAK  160 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCTTCHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCCCcHHHHHHH
Confidence            99999999999985  456789999999999999999999999999999443         6666777778899999999


Q ss_pred             ccccCCCCc--------cccccCccCCCCcccCCHHHHH--HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG--------SYFNNCCRCPPSKAAQDEALAT--KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ +++.        .+..+++.+.|+...++.....  ...+..+.... .+++|+++|+|||.+++|
T Consensus       161 aa~~-~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  230 (257)
T 3imf_A          161 AGVL-AMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYY  230 (257)
T ss_dssp             HHHH-HHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTSTTCSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9998 7663        3356677777776655421110  00011112221 248999999999998876

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=100.00  E-value=2.4e-33  Score=252.41  Aligned_cols=203  Identities=17%  Similarity=0.178  Sum_probs=166.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.||++|.++++++++++.+++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA--GHDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999999999999988888888665  5689999999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHH--HHHhc--------cccceecccccchhhhccC
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLEN--ALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~--~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      |+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|  .|.+.        ||+.+..+.++...|+++|
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asK  179 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASK  179 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCCCChhHHHHH
Confidence            9999999999985  4567889999999999999999999999999  46653        6677777888899999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHHHHH------------HHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLW------------KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ +++.       .+..+++.+.|+...++..  ....            +..+.... .+++|+++|+|||.+++|
T Consensus       180 aa~~-~l~~~la~e~~~~gi~vn~v~PG~v~T~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  256 (279)
T 3sju_A          180 HGVV-GFTKSVGFELAKTGITVNAVCPGYVETPMA--ERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGY  256 (279)
T ss_dssp             HHHH-HHHHHHHHHTGGGTEEEEEEEESSBCSHHH--HHHHHSCCSSSCCCHHHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHhhCcEEEEEeeCcccchHH--HHHHhhhhhcccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            9998 7663       3445667777776655432  2221            11112211 137999999999999876

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=100.00  E-value=3e-33  Score=250.57  Aligned_cols=209  Identities=20%  Similarity=0.227  Sum_probs=167.2

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +..+|+||++|||||++|||+++|++|+++|++|+++++ +.+.+++..+++...  +.++.++.+|++|++++++++++
T Consensus        12 ~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~   89 (270)
T 3is3_A           12 IPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL--GSDAIAIKADIRQVPEIVKLFDQ   89 (270)
T ss_dssp             CTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHH
Confidence            345789999999999999999999999999999999876 455666777777654  56899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccc-eecccccchhhhc
Q psy4246         196 YQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLF-ARQQGAATSIYCA  266 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~-~~~~~~~~~~y~a  266 (328)
                      +.+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.      ||.. +..+.++...|++
T Consensus        90 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~a  169 (270)
T 3is3_A           90 AVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLYSG  169 (270)
T ss_dssp             HHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTCCCTTCHHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccCCCCCCchhHH
Confidence            999999999999999985  556788999999999999999999999999999875      3433 3445678899999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHHHHH-----------HHHHHHHHHHH-HHHhccccccccccccc
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT-----------KLWKLSEEMIQ-SVVSTWLEETTERGEVV  327 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~r~g~p~dia~~v~  327 (328)
                      +|++++ +++.       .+..+++.+.|+...++.....           ...+..+.... .+++|+++|+|||.+++
T Consensus       170 sKaa~~-~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~  248 (270)
T 3is3_A          170 SKGAVD-SFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVG  248 (270)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHSTTCSCBCHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence            999999 7763       3456777777887776643210           00111111111 24899999999999987


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       249 ~  249 (270)
T 3is3_A          249 F  249 (270)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=100.00  E-value=9.1e-33  Score=248.76  Aligned_cols=208  Identities=17%  Similarity=0.273  Sum_probs=166.5

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC------------hhHHHHHHHHHHhhCCCCeEEEEEcccCC
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS------------LDKANDAISKILTEKPSAQCIAMELNLCR  185 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~------------~~~~~~~~~~l~~~~~~~~~~~~~~Dls~  185 (328)
                      +.+|+||++|||||++|||+++|++|+++|++|++++|+            .+.+++...++...  +.++.++.+|++|
T Consensus         5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~   82 (281)
T 3s55_A            5 MADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT--GRRCISAKVDVKD   82 (281)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTC
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc--CCeEEEEeCCCCC
Confidence            357899999999999999999999999999999999997            55566666666554  5689999999999


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR  255 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~  255 (328)
                      +++++++++++.+.+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+.
T Consensus        83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~  162 (281)
T 3s55_A           83 RAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGH  162 (281)
T ss_dssp             HHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhc
Confidence            9999999999999999999999999985  556789999999999999999999999999999765        666777


Q ss_pred             cccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHH----H--------HHHHHHHHHH---HH
Q psy4246         256 QQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK----L--------WKLSEEMIQS---VV  313 (328)
Q Consensus       256 ~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~---~~  313 (328)
                      .+.++...|+++|++++ +++.       .+..+++.+.|+...++......    +        ..........   ..
T Consensus       163 ~~~~~~~~Y~asK~a~~-~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (281)
T 3s55_A          163 SANFAQASYVSSKWGVI-GLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQY  241 (281)
T ss_dssp             SCCTTCHHHHHHHHHHH-HHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHHHHHHCSSS
T ss_pred             CCCCCCchhHHHHHHHH-HHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHHHHHHhhhccC
Confidence            78888999999999998 7763       34566777777766665321100    0        0001111111   13


Q ss_pred             hcccccccccccccC
Q psy4246         314 STWLEETTERGEVVF  328 (328)
Q Consensus       314 ~r~g~p~dia~~v~F  328 (328)
                      +|+++|+|||.+++|
T Consensus       242 ~~~~~p~dvA~~v~~  256 (281)
T 3s55_A          242 APFLKPEEVTRAVLF  256 (281)
T ss_dssp             CSCBCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHH
Confidence            799999999999876

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=1.4e-33  Score=251.27  Aligned_cols=207  Identities=18%  Similarity=0.168  Sum_probs=159.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++|+||++|||||++|||+++|++|+++|++|+++ +++.+..++..+++...  +.++.++.+|++|.++++++++++.
T Consensus         4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (259)
T 3edm_A            4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL--GRSALAIKADLTNAAEVEAAISAAA   81 (259)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT--TSCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999998 56666677777777654  5688999999999999999999999


Q ss_pred             HhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------ccccee-cccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFAR-QQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~-~~~~~~~~y~as  267 (328)
                      +++|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|++.      ||+.+. .+.++...|+++
T Consensus        82 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~as  161 (259)
T 3edm_A           82 DKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGGPGALAYATS  161 (259)
T ss_dssp             HHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCSTTCHHHHHH
T ss_pred             HHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCCCCcHHHHHH
Confidence            9999999999999975   456789999999999999999999999999999875      555555 566788899999


Q ss_pred             CccccCCCCcccc------ccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGSYF------NNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..+.      .+++.+.|+...++........+..+.... .+++|+++|+|||.+++|
T Consensus       162 Kaa~~-~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~  228 (259)
T 3edm_A          162 KGAVM-TFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTKPEVRERVAGATSLKREGSSEDVAGLVAF  228 (259)
T ss_dssp             HHHHH-HHHHHHHHHHTTTCEEEEEEECCBCC----------------------CCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHCCCCEEEEEEECCCcCcccccccChHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999 7663211      566667777666653221111111222222 248999999999998876

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=100.00  E-value=1.5e-32  Score=245.68  Aligned_cols=205  Identities=21%  Similarity=0.280  Sum_probs=167.8

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |.++|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++....++..+..+.+|+++.++++++++  
T Consensus         4 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (267)
T 3t4x_A            4 MHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIE--   81 (267)
T ss_dssp             CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHH--
T ss_pred             cccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHH--
Confidence            456799999999999999999999999999999999999999999998888887667789999999999998877654  


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                        ++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|++
T Consensus        82 --~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  159 (267)
T 3t4x_A           82 --KYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSA  159 (267)
T ss_dssp             --HCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCTTCHHHHH
T ss_pred             --hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCCcchHHHH
Confidence              579999999999985  456788999999999999999999999999999765        66677778888999999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHH------------HHHHHHHHH-----HHhcccccccc
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW------------KLSEEMIQS-----VVSTWLEETTE  322 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-----~~~r~g~p~di  322 (328)
                      +|++++ +++..       +..+++.+.|+...++..  ....            +..++....     +++|+++|+||
T Consensus       160 sKaa~~-~l~~~la~e~~~~gi~vn~v~PG~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedv  236 (267)
T 3t4x_A          160 TKTMQL-SLSRSLAELTTGTNVTVNTIMPGSTLTEGV--ETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEI  236 (267)
T ss_dssp             HHHHHH-HHHHHHHHHTTTSEEEEEEEEECCBCCHHH--HHHHHHSSTTSCCCHHHHHHHHHHHHCTTCSSCSCBCTHHH
T ss_pred             HHHHHH-HHHHHHHHHhCCCCeEEEEEeCCeecCccH--HHHHhhcCcccCCCHHHHHHHHhhccCCcccccCccCHHHH
Confidence            999999 76633       345667777776665432  1111            111222222     25899999999


Q ss_pred             cccccC
Q psy4246         323 RGEVVF  328 (328)
Q Consensus       323 a~~v~F  328 (328)
                      |.+++|
T Consensus       237 A~~v~f  242 (267)
T 3t4x_A          237 AHLVTF  242 (267)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=100.00  E-value=5.2e-33  Score=249.91  Aligned_cols=209  Identities=15%  Similarity=0.165  Sum_probs=166.8

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-------------ChhHHHHHHHHHHhhCCCCeEEEEEccc
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-------------SLDKANDAISKILTEKPSAQCIAMELNL  183 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-------------~~~~~~~~~~~l~~~~~~~~~~~~~~Dl  183 (328)
                      |..+|+||++|||||++|||+++|++|+++|++|++++|             +.+.+++...++...  +.++.++.+|+
T Consensus         5 m~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~   82 (277)
T 3tsc_A            5 MAGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRRIVAAVVDT   82 (277)
T ss_dssp             --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred             cccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCC
Confidence            445789999999999999999999999999999999998             566777777666554  56899999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------ccc
Q psy4246         184 CRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKL  252 (328)
Q Consensus       184 s~~~~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~  252 (328)
                      +|.++++++++++.+++|+||+||||||+.  .++.+.+.++|+++|++|+.|+++++++++|+|.++         ||+
T Consensus        83 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  162 (277)
T 3tsc_A           83 RDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSA  162 (277)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccH
Confidence            999999999999999999999999999985  445688999999999999999999999999999764         566


Q ss_pred             ceecccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHH------HHH----HHHhc
Q psy4246         253 FARQQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEE------MIQ----SVVST  315 (328)
Q Consensus       253 ~~~~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~r  315 (328)
                      .+..+.++...|+++|++++ .++.       .+..+++.+.|+...++.............      ..+    ....|
T Consensus       163 ~~~~~~~~~~~Y~asKaa~~-~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r  241 (277)
T 3tsc_A          163 AGMKMQPFMIHYTASKHAVT-GLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDW  241 (277)
T ss_dssp             GGTSCCSSCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTCGGGTTTTCCSSSCS
T ss_pred             hhCCCCCCchhhHHHHHHHH-HHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhhhhhhcccccHHHHHHhhhccCCC
Confidence            67777788999999999999 7763       345677777787776654222111111100      000    01247


Q ss_pred             ccccccccccccC
Q psy4246         316 WLEETTERGEVVF  328 (328)
Q Consensus       316 ~g~p~dia~~v~F  328 (328)
                      +++|+|||.+++|
T Consensus       242 ~~~pedvA~~v~~  254 (277)
T 3tsc_A          242 VAEPEDIADTVCW  254 (277)
T ss_dssp             CBCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999876

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=100.00  E-value=8.1e-33  Score=246.64  Aligned_cols=207  Identities=17%  Similarity=0.205  Sum_probs=169.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++|+.+.++++..++...  +.++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (262)
T 1zem_A            3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVR   80 (262)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999998888877777654  56789999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      .+|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|.++        ||+.+..+.++...|+++
T Consensus        81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  160 (262)
T 1zem_A           81 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTS  160 (262)
T ss_dssp             HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHH
T ss_pred             HhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCCchHHHH
Confidence            999999999999975   345688999999999999999999999999999764        555666677788999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHH--HH------------HH-HHHHHHH-HHHhcccccccccc
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT--KL------------WK-LSEEMIQ-SVVSTWLEETTERG  324 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~--~~------------~~-~~~~~~~-~~~~r~g~p~dia~  324 (328)
                      |+++. .++.       .+..+++.+.|+...++.....  .+            .+ ..+.+.. .+++|+++|+|||.
T Consensus       161 K~a~~-~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~  239 (262)
T 1zem_A          161 KGAII-ALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPG  239 (262)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHH
T ss_pred             HHHHH-HHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcCCCCCCcCHHHHHH
Confidence            99998 6663       3456777777887777653211  00            01 1111212 24799999999999


Q ss_pred             cccC
Q psy4246         325 EVVF  328 (328)
Q Consensus       325 ~v~F  328 (328)
                      +++|
T Consensus       240 ~v~~  243 (262)
T 1zem_A          240 VVAF  243 (262)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=100.00  E-value=2.9e-33  Score=252.63  Aligned_cols=209  Identities=16%  Similarity=0.202  Sum_probs=167.0

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC----------------hhHHHHHHHHHHhhCCCCeEEEEE
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS----------------LDKANDAISKILTEKPSAQCIAME  180 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~----------------~~~~~~~~~~l~~~~~~~~~~~~~  180 (328)
                      |..+|+||++|||||++|||+++|+.|+++|++|++++|+                .+.+++..+++...  +.++.++.
T Consensus         5 m~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   82 (286)
T 3uve_A            5 MTGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAE   82 (286)
T ss_dssp             -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred             CCcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEE
Confidence            4457899999999999999999999999999999999887                66677766666554  56899999


Q ss_pred             cccCCHHHHHHHHHHHHHhcCCccEEEEccccCC---CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------
Q psy4246         181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------  249 (328)
Q Consensus       181 ~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------  249 (328)
                      +|++|+++++++++++.+++|+||+||||||+..   ++.+.+.++|+++|++|+.|+++++++++|+|.++        
T Consensus        83 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~  162 (286)
T 3uve_A           83 VDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIIL  162 (286)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            9999999999999999999999999999999853   35678999999999999999999999999999763        


Q ss_pred             -cccceecccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHH---------HHHHHH--
Q psy4246         250 -AKLFARQQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKL---------SEEMIQ--  310 (328)
Q Consensus       250 -ss~~~~~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--  310 (328)
                       ||+.+..+.++...|+++|++++ +++.       .+..+++.+.|+...++.......+..         .+....  
T Consensus       163 isS~~~~~~~~~~~~Y~asKaa~~-~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (286)
T 3uve_A          163 TSSVGGLKAYPHTGHYVAAKHGVV-GLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPIC  241 (286)
T ss_dssp             ECCGGGTSCCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHH
T ss_pred             ECchhhccCCCCccHHHHHHHHHH-HHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchhhHHHHH
Confidence             56667777888999999999999 7763       345677777787776653211111100         001110  


Q ss_pred             ----HHHhcccccccccccccC
Q psy4246         311 ----SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       311 ----~~~~r~g~p~dia~~v~F  328 (328)
                          ...+|+++|+|||.+++|
T Consensus       242 ~~~~~~p~r~~~p~dvA~~v~f  263 (286)
T 3uve_A          242 QMFHTLPIPWVEPIDISNAVLF  263 (286)
T ss_dssp             HTTCSSSCSCBCHHHHHHHHHH
T ss_pred             HhhhccCCCcCCHHHHHHHHHH
Confidence                002799999999999876

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=100.00  E-value=4.7e-33  Score=250.53  Aligned_cols=208  Identities=16%  Similarity=0.234  Sum_probs=167.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-------------ChhHHHHHHHHHHhhCCCCeEEEEEcccC
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-------------SLDKANDAISKILTEKPSAQCIAMELNLC  184 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-------------~~~~~~~~~~~l~~~~~~~~~~~~~~Dls  184 (328)
                      +.+|+||++|||||++|||+++|++|+++|++|++++|             +.+.+++..+++...  +.++.++.+|++
T Consensus        10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   87 (280)
T 3pgx_A           10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRKALTRVLDVR   87 (280)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTT
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEEcCCC
Confidence            45799999999999999999999999999999999998             667777777776654  668999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccc
Q psy4246         185 RLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLF  253 (328)
Q Consensus       185 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~  253 (328)
                      |+++++++++++.+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++         ||+.
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  167 (280)
T 3pgx_A           88 DDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSA  167 (280)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchh
Confidence            99999999999999999999999999985  456788999999999999999999999999999764         5667


Q ss_pred             eecccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHH---HHHH------HHHhccc
Q psy4246         254 ARQQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSE---EMIQ------SVVSTWL  317 (328)
Q Consensus       254 ~~~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~r~g  317 (328)
                      +..+.++...|+++|++++ .++.       .+..+++.+.|+...++........+...   ...+      ....|++
T Consensus       168 ~~~~~~~~~~Y~asKaa~~-~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  246 (280)
T 3pgx_A          168 GLKATPGNGHYSASKHGLT-ALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFM  246 (280)
T ss_dssp             GTSCCTTBHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSCCBTTBCSSCB
T ss_pred             hccCCCCchhHHHHHHHHH-HHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhhhcccCCCCCC
Confidence            7777888999999999998 7663       34567777778777665322111111110   0000      0113789


Q ss_pred             ccccccccccC
Q psy4246         318 EETTERGEVVF  328 (328)
Q Consensus       318 ~p~dia~~v~F  328 (328)
                      +|+|||.+++|
T Consensus       247 ~p~dvA~~v~~  257 (280)
T 3pgx_A          247 TADEVADVVAW  257 (280)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999999876

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.98  E-value=3.3e-33  Score=250.64  Aligned_cols=202  Identities=21%  Similarity=0.198  Sum_probs=154.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++.+|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.+
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~   98 (272)
T 4dyv_A           24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCVPTDVTDPDSVRALFTATVE   98 (272)
T ss_dssp             ----CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----TSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999998888877776     45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------cccceecccccchhhh
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----------AKLFARQQGAATSIYC  265 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------ss~~~~~~~~~~~~y~  265 (328)
                      ++|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++          ||+.+..+.++...|+
T Consensus        99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~  178 (272)
T 4dyv_A           99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYT  178 (272)
T ss_dssp             HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTTCHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCCchHHH
Confidence            999999999999985   456788999999999999999999999999999863          5556677778889999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHH-HHHHHHHHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKL-SEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ +++.       .+..+++.+.|+...++.  .+.+... .+.....+++|+++|+|||.+++|
T Consensus       179 asKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~--~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~f  246 (272)
T 4dyv_A          179 ATKHAIT-GLTKSTSLDGRVHDIACGQIDIGNADTPM--AQKMKAGVPQADLSIKVEPVMDVAHVASAVVY  246 (272)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTEEEEEEEEEECC--------------------------CHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhCccCEEEEEEEECcccChh--hhhhcccchhhhhcccccCCCCHHHHHHHHHH
Confidence            9999999 7763       344566666666655543  2222211 111222347899999999999876

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.98  E-value=9.2e-34  Score=255.67  Aligned_cols=208  Identities=20%  Similarity=0.164  Sum_probs=165.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~  100 (283)
T 3v8b_A           23 MMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA--GGQAIALEADVSDELQMRNAVRDLV  100 (283)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999988888887654  5689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceec--ccccchhh
Q psy4246         198 KKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQ--QGAATSIY  264 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~--~~~~~~~y  264 (328)
                      +++|+||+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..  +.++...|
T Consensus       101 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~~~Y  180 (283)
T 3v8b_A          101 LKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAY  180 (283)
T ss_dssp             HHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCSTTCHHH
T ss_pred             HHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCCCCCCchHH
Confidence            9999999999999984   567889999999999999999999999999999875        5555555  56778999


Q ss_pred             hccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHH-HHH-----HHHHH-HHHH--hcccccccccccccC
Q psy4246         265 CATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKL-WKL-----SEEMI-QSVV--STWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~-~~~~--~r~g~p~dia~~v~F  328 (328)
                      +++|++++ +++.       .+..+++.+.|+...++....... ...     .+... ..++  +|+++|+|||.+++|
T Consensus       181 ~asKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~f  259 (283)
T 3v8b_A          181 TATKAAQV-AIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRF  259 (283)
T ss_dssp             HHHHHHHH-HHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcCccccCCCCCHHHHHHHHHH
Confidence            99999998 7663       344567777777666553211000 000     00000 0124  899999999999876

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.98  E-value=2e-33  Score=248.98  Aligned_cols=201  Identities=21%  Similarity=0.237  Sum_probs=161.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCC-CeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPS-AQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++....++ .++.++.+|++|.++++++++++
T Consensus         2 ~~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   81 (250)
T 3nyw_A            2 SLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDI   81 (250)
T ss_dssp             ---CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999888888776544 68899999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      .+++|++|+||||||+.  .++ +.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+......|++
T Consensus        82 ~~~~g~iD~lvnnAg~~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  160 (250)
T 3nyw_A           82 HQKYGAVDILVNAAAMFMDGSL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGS  160 (250)
T ss_dssp             HHHHCCEEEEEECCCCCCCCCC-SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------CCTTHHHH
T ss_pred             HHhcCCCCEEEECCCcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCCCCcchHH
Confidence            99999999999999985  334 77889999999999999999999999999765        56666665666889999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ +++.       .+..+++.+.|+...++.  .....      ...+.+|+++|+|+|.+++|
T Consensus       161 sKaa~~-~l~~~la~e~~~~gi~vn~v~PG~v~T~~--~~~~~------~~~~~~~~~~p~dva~~v~~  220 (250)
T 3nyw_A          161 TKFALL-GLAESLYRELAPLGIRVTTLCPGWVNTDM--AKKAG------TPFKDEEMIQPDDLLNTIRC  220 (250)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTEEEEEEEESSBCSHH--HHHTT------CCSCGGGSBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhhcCcEEEEEecCcccCch--hhhcC------CCcccccCCCHHHHHHHHHH
Confidence            999998 7663       234566767777665543  22110      01236899999999998875

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.98  E-value=8.2e-33  Score=244.55  Aligned_cols=206  Identities=22%  Similarity=0.270  Sum_probs=166.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...  +.++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~   80 (247)
T 2jah_A            3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA--GAKVHVLELDVADRQGVDAAVASTVE   80 (247)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999998888887777654  56889999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~  269 (328)
                      .+|++|+||||||+.  +++.+.+.++|++++++|+.|+++++++++|+|+++       ||+.+..+.++...|+++|+
T Consensus        81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  160 (247)
T 2jah_A           81 ALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRVNVRNAAVYQATKF  160 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTCCCTTCHHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcCCCCCCcHHHHHHH
Confidence            999999999999985  456788999999999999999999999999999763       66666777788899999999


Q ss_pred             cccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcc--cccccccccccC
Q psy4246         270 DLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTW--LEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--g~p~dia~~v~F  328 (328)
                      +++ +++.       .+..+++.+.|+...++...........+.....+ +|+  ++|+|||.+++|
T Consensus       161 a~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~-~~~~~~~pedvA~~v~~  226 (247)
T 2jah_A          161 GVN-AFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRI-SQIRKLQAQDIAEAVRY  226 (247)
T ss_dssp             HHH-HHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHHHT-TTSCCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHHhcc-cccCCCCHHHHHHHHHH
Confidence            998 6663       34456677777776665321100000011111112 677  999999998875

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.98  E-value=9.7e-34  Score=252.74  Aligned_cols=208  Identities=14%  Similarity=0.147  Sum_probs=158.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC---hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS---LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      .++|+||++|||||++|||+++|++|+++|++|++++|.   .+.++++.+++...  +.++.++.+|++|+++++++++
T Consensus         6 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~   83 (262)
T 3ksu_A            6 YHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFD   83 (262)
T ss_dssp             CSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHH
Confidence            357899999999999999999999999999999998765   44566666776654  6789999999999999999999


Q ss_pred             HHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhc
Q psy4246         195 EYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~a  266 (328)
                      ++.+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.      +|..+..+.++...|++
T Consensus        84 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~Y~a  163 (262)
T 3ksu_A           84 FAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFYSTYAG  163 (262)
T ss_dssp             HHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHCCCCC---
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCCCCchhHH
Confidence            9999999999999999985  456788999999999999999999999999999655      44455556677889999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++.       .+..+++.+.|+...++........+..+.... .+++|+++|+|||.+++|
T Consensus       164 sKaa~~-~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~  232 (262)
T 3ksu_A          164 NKAPVE-HYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQLTKIEDIAPIIKF  232 (262)
T ss_dssp             --CHHH-HHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC------------CCCCSCCGGGTHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCchHHHHHHHhcCcccCCCCHHHHHHHHHH
Confidence            999998 7663       334566767777665543211100111111212 237899999999999876

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.98  E-value=1.1e-33  Score=251.39  Aligned_cols=203  Identities=16%  Similarity=0.127  Sum_probs=153.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.
T Consensus         2 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~   76 (257)
T 3tpc_A            2 VMQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRNADVTNEADATAALAFAK   76 (257)
T ss_dssp             --CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999988877766655     4578899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC--C----CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cccceecc
Q psy4246         198 KKFRSLNILVLNAGVFGL--G----FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------------AKLFARQQ  257 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~--~----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss~~~~~~  257 (328)
                      +++|++|+||||||+...  +    .+.+.++|++++++|+.|+++++++++|+|+++              ||+.+..+
T Consensus        77 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~  156 (257)
T 3tpc_A           77 QEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDG  156 (257)
T ss_dssp             HHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC
T ss_pred             HHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccC
Confidence            999999999999998632  2    267889999999999999999999999999862              55566677


Q ss_pred             cccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH-HHHHHHH-HHH-hccccccccccccc
Q psy4246         258 GAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQ-SVV-STWLEETTERGEVV  327 (328)
Q Consensus       258 ~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~-~r~g~p~dia~~v~  327 (328)
                      .++...|+++|++++ .++.       .+..+++.+.|+...++....  +.. ..+.... .++ +|+++|+|||.+++
T Consensus       157 ~~~~~~Y~asKaa~~-~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--~~~~~~~~~~~~~p~~~r~~~~~dva~~v~  233 (257)
T 3tpc_A          157 QIGQAAYAASKGGVA-ALTLPAARELARFGIRVVTIAPGIFDTPMMAG--MPQDVQDALAASVPFPPRLGRAEEYAALVK  233 (257)
T ss_dssp             CTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBSCC----------------CCSSSSCSCBCHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHH-HHHHHHHHHHHHcCeEEEEEEeCCCCChhhcc--CCHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence            788899999999998 7662       345677777788777764321  111 1111111 125 89999999999987


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       234 ~  234 (257)
T 3tpc_A          234 H  234 (257)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.98  E-value=1.7e-32  Score=246.15  Aligned_cols=206  Identities=21%  Similarity=0.260  Sum_probs=165.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|+||++|||||++|||+++|++|+++|++|++++|+ +.+++..+++...  +.++.++.+|++|.++++++. +..
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~-~~~  101 (273)
T 3uf0_A           26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADG--GGSAEAVVADLADLEGAANVA-EEL  101 (273)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTT--TCEEEEEECCTTCHHHHHHHH-HHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHH-HHH
Confidence            357899999999999999999999999999999999976 4556666666554  668999999999999999994 445


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++
T Consensus       102 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~as  181 (273)
T 3uf0_A          102 AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAAS  181 (273)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSCHHHHHH
T ss_pred             HhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCCCChhHHHH
Confidence            6679999999999985  456788999999999999999999999999999765        666777788889999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++.       .+..+++.+.|+...++...... ..+..+.... .+++|+++|+|||.+++|
T Consensus       182 Kaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~  250 (273)
T 3uf0_A          182 KHAVV-GLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATPEDMVGPAVF  250 (273)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHSTTSSCBCGGGGHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99999 7663       34566777778777665322111 1111222222 238999999999999876

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.98  E-value=2.2e-33  Score=248.08  Aligned_cols=204  Identities=23%  Similarity=0.279  Sum_probs=164.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +.+|++|||||++|||+++|++|+++|++|+++++ +.+.+++..+++...  +.++.++.+|++|.++++++++++.++
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK--GVDSFAIQANVADADEVKAMIKEVVSQ   79 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999887 556777777777655  568999999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|+
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  159 (246)
T 3osu_A           80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKA  159 (246)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHH
Confidence            99999999999985  456788999999999999999999999999999764        66667777888999999999


Q ss_pred             cccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++.       .+..+++.+.|+...++.... ...+..+.... .+++|+++|+|||.+++|
T Consensus       160 a~~-~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~-~~~~~~~~~~~~~p~~r~~~~~dva~~v~~  224 (246)
T 3osu_A          160 GVI-GLTKSAARELASRGITVNAVAPGFIVSDMTDA-LSDELKEQMLTQIPLARFGQDTDIANTVAF  224 (246)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC-SCHHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhcccCeEEEEEEECCCcCCcccc-cCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            998 7663       344566666676555432100 00011112221 248999999999998875

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.98  E-value=6.7e-33  Score=249.78  Aligned_cols=210  Identities=16%  Similarity=0.168  Sum_probs=164.7

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +.++|.+|++|||||++|||+++|++|+++|++|++++| +.+.+++...++... .+.++.++.+|++|.+++++++++
T Consensus        19 ~~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~   97 (281)
T 3v2h_A           19 YFQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGL-SSGTVLHHPADMTKPSEIADMMAM   97 (281)
T ss_dssp             ---CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTT-CSSCEEEECCCTTCHHHHHHHHHH
T ss_pred             hhhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhc-cCCcEEEEeCCCCCHHHHHHHHHH
Confidence            345789999999999999999999999999999999999 566677777666543 256899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhh
Q psy4246         196 YQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYC  265 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~  265 (328)
                      +.+++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+
T Consensus        98 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  177 (281)
T 3v2h_A           98 VADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYV  177 (281)
T ss_dssp             HHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHH
T ss_pred             HHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCCCchHHH
Confidence            999999999999999985  456788999999999999999999999999999875        6667777888899999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHH--HH--------HHHHH-HHH-HHHhcccccccccccc
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK--LW--------KLSEE-MIQ-SVVSTWLEETTERGEV  326 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~-~~~-~~~~r~g~p~dia~~v  326 (328)
                      ++|++++ .++.       .+..+++.+.|+...++......  ..        +...+ +.. .+++|+++|+|||.++
T Consensus       178 asKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v  256 (281)
T 3v2h_A          178 AAKHGIM-GLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLA  256 (281)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------CCTTCSCBCHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence            9999999 7663       33456677777766665321110  00        00001 111 2379999999999988


Q ss_pred             cC
Q psy4246         327 VF  328 (328)
Q Consensus       327 ~F  328 (328)
                      +|
T Consensus       257 ~~  258 (281)
T 3v2h_A          257 LY  258 (281)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.98  E-value=6.1e-33  Score=247.76  Aligned_cols=203  Identities=19%  Similarity=0.239  Sum_probs=160.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |.+|++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...  +.++.++.||++|.++++++++++.+.+
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA--GGTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999999998888888765  5689999999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      |+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|++
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa  159 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFA  159 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCCCChhHHHHHHH
Confidence            9999999999985  456788999999999999999999999999999764        667777788889999999999


Q ss_pred             ccCCCCccc-----cccCccCCCCcccCCHHHHHHHHHH-HHHHHHHHHhcccccccccccccC
Q psy4246         271 LSLPVSGSY-----FNNCCRCPPSKAAQDEALATKLWKL-SEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++ +++..+     ..+++.+.|+...++.  ....... .........+++++|+|||.+++|
T Consensus       160 l~-~l~~~la~e~~gIrvn~v~PG~v~T~~--~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~  220 (264)
T 3tfo_A          160 VR-AISDGLRQESTNIRVTCVNPGVVESEL--AGTITHEETMAAMDTYRAIALQPADIARAVRQ  220 (264)
T ss_dssp             HH-HHHHHHHHHCSSEEEEEEEECCC-------------------------CCCHHHHHHHHHH
T ss_pred             HH-HHHHHHHHhCCCCEEEEEecCCCcCcc--cccccchhHHHHHHhhhccCCCHHHHHHHHHH
Confidence            98 766332     3455656666655543  2222111 111111123457899999999876

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.98  E-value=5.1e-33  Score=251.76  Aligned_cols=208  Identities=18%  Similarity=0.175  Sum_probs=165.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|+||++|||||++|||+++|++|+++|++|++++|+.+...+...++.... +.++.++.+|++|+++++++++++.+
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999998765444333333332 56899999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ++|+||+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...|+++|+
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  201 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNETLIDYSATKG  201 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCTTCHHHHHHHH
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCCCChhHHHHHH
Confidence            999999999999985   345678999999999999999999999999999775      55566667778899999999


Q ss_pred             cccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++.       .+..+++.+.|+...++........+..+.... .+++|+++|+|||.+++|
T Consensus       202 a~~-~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~  267 (291)
T 3ijr_A          202 AIV-AFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFGSNVPMQRPGQPYELAPAYVY  267 (291)
T ss_dssp             HHH-HHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHHHHHHTTTTSTTSSCBCGGGTHHHHHH
T ss_pred             HHH-HHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHHHHHHHHccCCCCCCcCHHHHHHHHHH
Confidence            999 7663       335667777788777765322111111111111 237999999999999876

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.98  E-value=3e-32  Score=244.42  Aligned_cols=207  Identities=19%  Similarity=0.182  Sum_probs=166.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   94 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAH   94 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998888877777654  55789999999999999999999999


Q ss_pred             hc-CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KF-RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~-g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      .+ |++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++
T Consensus        95 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~as  174 (273)
T 1ae1_A           95 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSAS  174 (273)
T ss_dssp             HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             HcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCCCcchhHHH
Confidence            99 9999999999985  456788999999999999999999999999999764        566666677788999999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-----HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-----LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++......     ..+..+.... .+++|+++|+|||.+++|
T Consensus       175 K~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~  247 (273)
T 1ae1_A          175 KGAIN-QMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAF  247 (273)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99998 76633       3456676777766555321100     0011122222 247899999999998875

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.98  E-value=7.4e-33  Score=247.52  Aligned_cols=209  Identities=17%  Similarity=0.181  Sum_probs=168.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++....++.++.++.+|++|+++++++++++.+
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   88 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   88 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999988888877776654456899999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      ++|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  168 (267)
T 1iy8_A           89 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAA  168 (267)
T ss_dssp             HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHH
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCCCCCccHHHH
Confidence            999999999999985   345678999999999999999999999999999764        566666677788999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHH--H-HHHHHH----HHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT--K-LWKLSE----EMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~----~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++.       .+..+++.+.|+...++.....  . ..+..+    .... .+++|+++|+|||.+++|
T Consensus       169 K~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~  243 (267)
T 1iy8_A          169 KHGVV-GLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAF  243 (267)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccCCCCCCcCHHHHHHHHHH
Confidence            99998 7663       2446677777777666532211  0 000111    1111 137899999999998875

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.98  E-value=6e-33  Score=250.60  Aligned_cols=201  Identities=13%  Similarity=0.111  Sum_probs=163.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh-------HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD-------KANDAISKILTEKPSAQCIAMELNLCRLKSVK  190 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~-------~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  190 (328)
                      .++|++|++|||||++|||+++|++|+++|++|++++|+.+       .+++...++...  +.++.++.||++|+++++
T Consensus         4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~   81 (285)
T 3sc4_A            4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVA   81 (285)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHH
Confidence            35789999999999999999999999999999999999876       456666666655  568999999999999999


Q ss_pred             HHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceeccc-c
Q psy4246         191 KFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQG-A  259 (328)
Q Consensus       191 ~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~-~  259 (328)
                      ++++++.+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+. +
T Consensus        82 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~  161 (285)
T 3sc4_A           82 AAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWL  161 (285)
T ss_dssp             HHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGGS
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCCC
Confidence            99999999999999999999985  556789999999999999999999999999999865        555555554 6


Q ss_pred             cchhhhccCccccCCCCc-------cccccCccCCCCc-ccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         260 ATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSK-AAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       260 ~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +...|+++|++++ .++.       .+..+++.+.|+. ..++  +....+.     ...+++|+++|+|+|.+++|
T Consensus       162 ~~~~Y~asKaal~-~~~~~la~e~~~~gI~vn~v~PG~~v~t~--~~~~~~~-----~~~~~~r~~~pedvA~~~~~  230 (285)
T 3sc4_A          162 RPTPYMMAKYGMT-LCALGIAEELRDAGIASNTLWPRTTVATA--AVQNLLG-----GDEAMARSRKPEVYADAAYV  230 (285)
T ss_dssp             CSHHHHHHHHHHH-HHHHHHHHHTGGGTCEEEEEECSSCBCCH--HHHHHHT-----SCCCCTTCBCTHHHHHHHHH
T ss_pred             CCchHHHHHHHHH-HHHHHHHHHhcccCcEEEEEeCCCccccH--HHHhhcc-----ccccccCCCCHHHHHHHHHH
Confidence            6789999999998 7663       3456677777773 3332  2221111     01137899999999998875

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.98  E-value=2.2e-32  Score=250.60  Aligned_cols=208  Identities=20%  Similarity=0.261  Sum_probs=167.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC------------hhHHHHHHHHHHhhCCCCeEEEEEcccCC
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS------------LDKANDAISKILTEKPSAQCIAMELNLCR  185 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~------------~~~~~~~~~~l~~~~~~~~~~~~~~Dls~  185 (328)
                      +.+|+||++|||||++|||+++|+.|+++|++|++++|+            .+.+++...++...  +.++.++.+|++|
T Consensus        41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d  118 (317)
T 3oec_A           41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRD  118 (317)
T ss_dssp             -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTC
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCC
Confidence            346899999999999999999999999999999999876            56666666666554  5689999999999


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccce
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFA  254 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~  254 (328)
                      +++++++++++.+++|+||+||||||+.  .++.+.+.++|+++|++|+.|+++++++++|+|.++         ||+.+
T Consensus       119 ~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~  198 (317)
T 3oec_A          119 LASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVG  198 (317)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHh
Confidence            9999999999999999999999999985  456789999999999999999999999999999764         56667


Q ss_pred             ecccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHH---------HHHHHHH---H---
Q psy4246         255 RQQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKL---------SEEMIQS---V---  312 (328)
Q Consensus       255 ~~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~---  312 (328)
                      ..+.++...|+++|++++ .++.       .+..+++.+.|+...++..........         .+...+.   .   
T Consensus       199 ~~~~~~~~~Y~asKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (317)
T 3oec_A          199 LRGAPGQSHYAASKHGVQ-GLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLL  277 (317)
T ss_dssp             SSCCTTBHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHTTTCSS
T ss_pred             cCCCCCCcchHHHHHHHH-HHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHHHHHhhhccC
Confidence            777888999999999999 7763       345667777787776654322211111         0111111   0   


Q ss_pred             HhcccccccccccccC
Q psy4246         313 VSTWLEETTERGEVVF  328 (328)
Q Consensus       313 ~~r~g~p~dia~~v~F  328 (328)
                      -+|+++|+|||.+++|
T Consensus       278 p~~~~~pedvA~av~f  293 (317)
T 3oec_A          278 PIPWVEPEDVSNAVAW  293 (317)
T ss_dssp             SSSSBCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            1689999999999876

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.98  E-value=1.2e-32  Score=248.19  Aligned_cols=203  Identities=17%  Similarity=0.211  Sum_probs=160.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |+|+||++|||||++|||+++|++|+++|++|++++|+.+.++++..++     +.++.++.+|++|.++++++++++.+
T Consensus         1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   75 (281)
T 3zv4_A            1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVGDVRSLQDQKRAAERCLA   75 (281)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----BTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc-----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999988877655443     56889999999999999999999999


Q ss_pred             hcCCccEEEEccccCCC---C----CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhh
Q psy4246         199 KFRSLNILVLNAGVFGL---G----FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIY  264 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~---~----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y  264 (328)
                      ++|+||+||||||+...   .    .+.+.++|++++++|+.|+++++++++|+|.++       +|+.+..+.++...|
T Consensus        76 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  155 (281)
T 3zv4_A           76 AFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNGGGPLY  155 (281)
T ss_dssp             HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSSSSCHHH
T ss_pred             hcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCCCCCchh
Confidence            99999999999998522   2    244567899999999999999999999999764       666777778888999


Q ss_pred             hccCccccCCCCc-------cccccCccCCCCcccCCHH------HHHHHH---HHHHHHHH-HHHhccccccccccccc
Q psy4246         265 CATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEA------LATKLW---KLSEEMIQ-SVVSTWLEETTERGEVV  327 (328)
Q Consensus       265 ~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~-~~~~r~g~p~dia~~v~  327 (328)
                      +++|++++ .++.       .+ .+++.+.|+...++..      ..+...   ...+.... .+++|+++|+|||++++
T Consensus       156 ~asKaa~~-~l~~~la~e~~~~-Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~  233 (281)
T 3zv4_A          156 TATKHAVV-GLVRQMAFELAPH-VRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYV  233 (281)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTTT-SEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTTSSCCCGGGGSHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHhcCC-CEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence            99999999 7663       23 6677777776665431      000000   01112222 23899999999999987


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       234 f  234 (281)
T 3zv4_A          234 F  234 (281)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.98  E-value=2.1e-32  Score=244.30  Aligned_cols=209  Identities=18%  Similarity=0.155  Sum_probs=166.1

Q ss_pred             CCCCCCceEEEcCCC-CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGAN-TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas-~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..+|++|++|||||+ +|||+++|++|+++|++|++++|+.+.+++..+++.... +.++.++.+|++|.++++++++++
T Consensus        17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHH
Confidence            456899999999997 599999999999999999999999999888888886543 568999999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhh
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYC  265 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~  265 (328)
                      .+++++||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.         ||+.+..+.++...|+
T Consensus        96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~  175 (266)
T 3o38_A           96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYA  175 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCTTCHHHH
T ss_pred             HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCCCCchHH
Confidence            99999999999999985  455688999999999999999999999999999864         5666777778899999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++.       .+..+++.+.|+...++........+..+.... .+++|+++|+|+|.+++|
T Consensus       176 ~sKaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~~~dva~~i~~  245 (266)
T 3o38_A          176 AAKAGVM-ALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSSELLDRLASDEAFGRAAEPWEVAATIAF  245 (266)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCCCC-----------------CCTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCcHHHHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence            9999998 6663       234556666677666553222111111122221 137899999999998875

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.98  E-value=2.1e-32  Score=242.65  Aligned_cols=200  Identities=23%  Similarity=0.217  Sum_probs=166.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEccc--CCHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNL--CRLKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl--s~~~~v~~~~~~~  196 (328)
                      ..|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.... +.++.++.+|+  +|.++++++++++
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-GRQPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCCceEEEEecccCCHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999888888876653 34788899999  9999999999999


Q ss_pred             HHhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhh
Q psy4246         197 QKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYC  265 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~  265 (328)
                      .+.+|+||+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~  166 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYA  166 (252)
T ss_dssp             HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCTTCHHHH
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCCCCchhH
Confidence            99999999999999984   467789999999999999999999999999999875        6667777788899999


Q ss_pred             ccCccccCCCCcccc------ccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSGSYF------NNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ +++..+.      .+++.+.|+...++..  ....      .....+|+++|+|||.+++|
T Consensus       167 asK~a~~-~l~~~la~e~~~~irvn~v~PG~v~t~~~--~~~~------~~~~~~~~~~p~dva~~~~~  226 (252)
T 3f1l_A          167 ASKFATE-GMMQVLADEYQQRLRVNCINPGGTRTAMR--ASAF------PTEDPQKLKTPADIMPLYLW  226 (252)
T ss_dssp             HHHHHHH-HHHHHHHHHTTTTCEEEEEECCSBSSHHH--HHHC------TTCCGGGSBCTGGGHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhcCCcEEEEEecCcccCchh--hhhC------CccchhccCCHHHHHHHHHH
Confidence            9999998 7663221      5666677777666432  1110      01125789999999998876

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.98  E-value=8.7e-33  Score=242.64  Aligned_cols=193  Identities=16%  Similarity=0.091  Sum_probs=155.6

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|++|+++++++++++.+++
T Consensus         1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999999998888777766     2368999999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCccc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      |++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++       ||+.+..+.++...|+++|+++
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa~  155 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKANESLYCASKWGM  155 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSCSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCCCCCcHHHHHHHHH
Confidence            9999999999985  456788999999999999999999999999999874       6667777888899999999999


Q ss_pred             cCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         272 SLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      + +++.       .+..+++.+.|+...++.....         .....+|+++|+|+|.+++|
T Consensus       156 ~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~---------~~~~~~~~~~pedvA~~v~~  209 (235)
T 3l6e_A          156 R-GFLESLRAELKDSPLRLVNLYPSGIRSEFWDNT---------DHVDPSGFMTPEDAAAYMLD  209 (235)
T ss_dssp             H-HHHHHHHHHTTTSSEEEEEEEEEEECCCC--------------------CBCHHHHHHHHHH
T ss_pred             H-HHHHHHHHHhhccCCEEEEEeCCCccCcchhcc---------CCCCCcCCCCHHHHHHHHHH
Confidence            8 7663       2345666677777666532111         01235689999999998875

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.97  E-value=1.8e-32  Score=248.36  Aligned_cols=207  Identities=12%  Similarity=0.088  Sum_probs=161.9

Q ss_pred             CCCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       118 ~~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +.+|+||++|||||+  +|||+++|+.|+++|++|++++|+.... +...++....  .++.++.||++|.+++++++++
T Consensus        26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~-~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALK-KRVEPLAEEL--GAFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHH-HHHHHHHHHH--TCEEEEECCTTCHHHHHHHHHH
T ss_pred             cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHHHHhc--CCceEEECCCCCHHHHHHHHHH
Confidence            457999999999999  5599999999999999999999995433 3344444432  3688999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchh
Q psy4246         196 YQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSI  263 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~  263 (328)
                      +.+++|+||+||||||+.      .++.+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...
T Consensus       103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~  182 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMPNYNV  182 (293)
T ss_dssp             HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCTTTTH
T ss_pred             HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCCchHH
Confidence            999999999999999985      356788999999999999999999999999999875      55566667788899


Q ss_pred             hhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++|++++ .++.       .+..+++.+.|+...++...... .....+.... .+++|+++|+|||.+++|
T Consensus       183 Y~asKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  255 (293)
T 3grk_A          183 MGVAKAALE-ASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIDEVGDVGLY  255 (293)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999999999 7763       34567777778777665322110 0111122222 238999999999999876

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.97  E-value=7e-33  Score=247.70  Aligned_cols=203  Identities=16%  Similarity=0.237  Sum_probs=160.6

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |..++.+|++|||||++|||+++|++|+++|++|++++|+.+.+++.        ...++.++.+|++|.++++++++++
T Consensus        10 m~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~--------~~~~~~~~~~Dv~d~~~v~~~~~~~   81 (266)
T 3p19_A           10 MGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL--------NLPNTLCAQVDVTDKYTFDTAITRA   81 (266)
T ss_dssp             -----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT--------CCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh--------hcCCceEEEecCCCHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999997665432        1337889999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      .+.+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|++
T Consensus        82 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~a  161 (266)
T 3p19_A           82 EKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCG  161 (266)
T ss_dssp             HHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHH
T ss_pred             HHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCCCCchHHH
Confidence            99999999999999985  556788999999999999999999999999999865        66677778888999999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHH--HHHHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEM--IQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ +++.       .+..+++.+.|+...++..............  ...+++|+++|+|||.+++|
T Consensus       162 sK~a~~-~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~av~~  231 (266)
T 3p19_A          162 TKFAVH-AISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLF  231 (266)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhcccccCCCCHHHHHHHHHH
Confidence            999998 7663       3456677777776666532110000001111  12358999999999999876

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.97  E-value=5.5e-32  Score=241.30  Aligned_cols=209  Identities=18%  Similarity=0.224  Sum_probs=168.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.... +.++.++.+|++|+++++++++++.
T Consensus         2 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~   80 (263)
T 3ai3_A            2 DMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVR   80 (263)
T ss_dssp             CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999988887777775432 3478899999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++
T Consensus        81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~s  160 (263)
T 3ai3_A           81 SSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVT  160 (263)
T ss_dssp             HHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCcchHHHH
Confidence            9999999999999985  456788999999999999999999999999999764        566666667788899999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHH----------HHHHHHHHHH--HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK----------LWKLSEEMIQ--SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++......          ..+..+....  .+++|+++|+|||.+++|
T Consensus       161 K~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~  239 (263)
T 3ai3_A          161 KAALM-MFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVF  239 (263)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            99998 76633       4456677777776665322110          0111122222  247899999999998865

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.9e-33  Score=250.38  Aligned_cols=208  Identities=22%  Similarity=0.281  Sum_probs=172.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCC---eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGC---RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga---~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .+|+||++|||||++|||+++|++|+++|+   +|++++|+.+.++++.+++....++.++.++.||++|++++++++++
T Consensus        29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~  108 (287)
T 3rku_A           29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN  108 (287)
T ss_dssp             HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred             hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence            357899999999999999999999999998   99999999999999988888776678999999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhh
Q psy4246         196 YQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIY  264 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y  264 (328)
                      +.+++|+||+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|
T Consensus       109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y  188 (287)
T 3rku_A          109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIY  188 (287)
T ss_dssp             SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHH
T ss_pred             HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCCCCchH
Confidence            999999999999999975   356788999999999999999999999999999764        677777888889999


Q ss_pred             hccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHH-HhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSV-VSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ +++.       .+..+++.+.|+...++..... .....+...... ..+..+|+|||.+++|
T Consensus       189 ~asKaa~~-~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~p~~pedvA~~v~~  258 (287)
T 3rku_A          189 CASKFAVG-AFTDSLRKELINTKIRVILIAPGLVETEFSLVR-YRGNEEQAKNVYKDTTPLMADDVADLIVY  258 (287)
T ss_dssp             HHHHHHHH-HHHHHHHHHTTTSSCEEEEEEESCEESSHHHHH-TTTCHHHHHHHHTTSCCEEHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHhhhcCCEEEEEeCCcCcCcccccc-ccCcHHHHHHhhcccCCCCHHHHHHHHHH
Confidence            99999998 7663       3456777788888877753221 101111111112 2345689999999876

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.97  E-value=9.2e-33  Score=243.93  Aligned_cols=205  Identities=23%  Similarity=0.287  Sum_probs=167.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.+
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (247)
T 3lyl_A            1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESIQNFFAEIKA   78 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999999888888887765  56899999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|+|.++        ||+.+..+.++...|+++|
T Consensus        79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  158 (247)
T 3lyl_A           79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAK  158 (247)
T ss_dssp             TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCcHHHHHHH
Confidence            999999999999986  445688999999999999999999999999999774        6666677778899999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHH-HHHH-HHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLS-EEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++.       .+..+++.+.|+...++...  .+.... +... ..+++|+++|+|+|.+++|
T Consensus       159 ~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~  224 (247)
T 3lyl_A          159 AGVI-GFSKSLAYEVASRNITVNVVAPGFIATDMTD--KLTDEQKSFIATKIPSGQIGEPKDIAAAVAF  224 (247)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCTTTT--TSCHHHHHHHHTTSTTCCCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHcCeEEEEEeeCcEecccch--hccHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            9998 6663       23455666666665554211  111111 1111 1237899999999998765

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.2e-32  Score=247.20  Aligned_cols=198  Identities=19%  Similarity=0.149  Sum_probs=160.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-------HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-------ANDAISKILTEKPSAQCIAMELNLCRLKSVKK  191 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  191 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.+.       +++...++...  +.++.++.+|++|++++++
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~   79 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRA   79 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHH
Confidence            57899999999999999999999999999999999998653       55556666554  6789999999999999999


Q ss_pred             HHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecc--cc
Q psy4246         192 FAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQ--GA  259 (328)
Q Consensus       192 ~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~--~~  259 (328)
                      +++++.+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+  .+
T Consensus        80 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~  159 (274)
T 3e03_A           80 AVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWG  159 (274)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHHHH
T ss_pred             HHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCC
Confidence            9999999999999999999985  456788999999999999999999999999999875        44444544  46


Q ss_pred             cchhhhccCccccCCCCc-------cccccCccCCCC-cccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         260 ATSIYCATSLDLSLPVSG-------SYFNNCCRCPPS-KAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       260 ~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +...|+++|++++ .++.       .+..+++.+.|+ ...++..  ..       .......|+++|+|+|.+++|
T Consensus       160 ~~~~Y~asKaal~-~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~--~~-------~~~~~~~~~~~pedvA~~v~~  226 (274)
T 3e03_A          160 AHTGYTLAKMGMS-LVTLGLAAEFGPQGVAINALWPRTVIATDAI--NM-------LPGVDAAACRRPEIMADAAHA  226 (274)
T ss_dssp             HCHHHHHHHHHHH-HHHHHHHHHHGGGTCEEEEEECSBCBCC----------------CCCGGGSBCTHHHHHHHHH
T ss_pred             CCchHHHHHHHHH-HHHHHHHHHhhhcCEEEEEEECCcccccchh--hh-------cccccccccCCHHHHHHHHHH
Confidence            7788999999999 7763       344667777777 3444432  11       111236789999999998876

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.97  E-value=4.3e-32  Score=242.70  Aligned_cols=209  Identities=23%  Similarity=0.293  Sum_probs=166.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..+|++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++.... +.++.++.+|++|+++++++++++.
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~   94 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVK   94 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            346899999999999999999999999999999999999988887777763222 4578899999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccc-eecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLF-ARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~-~~~~~~~~~~y~a  266 (328)
                      +++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+. +..+.++...|++
T Consensus        95 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~a  174 (267)
T 1vl8_A           95 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAA  174 (267)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHH
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCCCCChhHHH
Confidence            9999999999999985  455788999999999999999999999999999764        5555 5666678889999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++.+.|+...++...... ..+....... .+++|+++|+|||.+++|
T Consensus       175 sK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~  244 (267)
T 1vl8_A          175 SKGGVA-SLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVF  244 (267)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGGGHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhCCCCCCcCHHHHHHHHHH
Confidence            999999 76633       3456777777777665321100 0111112222 237899999999998875

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.97  E-value=7.3e-32  Score=240.15  Aligned_cols=207  Identities=20%  Similarity=0.217  Sum_probs=166.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.+
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVAN   82 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998888877777654  56899999999999999999999999


Q ss_pred             hc-CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KF-RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~-g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      .+ +++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++
T Consensus        83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~s  162 (260)
T 2ae2_A           83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGAT  162 (260)
T ss_dssp             HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCcchHHHH
Confidence            99 9999999999985  445688999999999999999999999999999764        566666667788999999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-HHHHHH---HHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-LWKLSE---EMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++...... .....+   .... .+++|+++|+|+|.+++|
T Consensus       163 K~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~  234 (260)
T 2ae2_A          163 KGAMD-QLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAF  234 (260)
T ss_dssp             HHHHH-HHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99998 76633       3456666777766654321100 001111   1211 237899999999998865

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.97  E-value=2.2e-33  Score=252.88  Aligned_cols=206  Identities=18%  Similarity=0.148  Sum_probs=162.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.... +..+.++.+|++|+++++++++++.+
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  107 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-GNIVRAVVCDVGDPDQVAALFAAVRA  107 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999998888888876542 33468999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------cccceecccccchhhh
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----------AKLFARQQGAATSIYC  265 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------ss~~~~~~~~~~~~y~  265 (328)
                      ++|+||+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++          ||+.+..+.++...|+
T Consensus       108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~  187 (281)
T 4dry_A          108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYT  187 (281)
T ss_dssp             HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCTTCHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCCCChhHH
Confidence            999999999999985   456788999999999999999999999999999863          5666777788899999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHH-HHHHHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEE-MIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ +++.       .+..+++.+.|+...++..  ..+.....+ ....+.+|+++|+|||.+++|
T Consensus       188 asKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~--~~~~~~~~~~~~~~~~~~~~~pedvA~~v~f  255 (281)
T 4dry_A          188 ATKHAIT-GLTKSTALDGRMHDIACGQIDIGNAATDMT--ARMSTGVLQANGEVAAEPTIPIEHIAEAVVY  255 (281)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTEEEEEEEEECBCC---------CEEECTTSCEEECCCBCHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhcccCeEEEEEEECcCcChhh--hhhcchhhhhhhcccccCCCCHHHHHHHHHH
Confidence            9999999 7763       3456677777776666532  111110000 001126789999999999876

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.97  E-value=1.5e-32  Score=244.77  Aligned_cols=200  Identities=20%  Similarity=0.250  Sum_probs=153.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++|+||++|||||++|||+++|+.|+++|++|++++|+.+++.+...+.       .+.++.+|++|+++++++++++.
T Consensus        22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~   94 (260)
T 3gem_A           22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA-------GAVALYGDFSCETGIMAFIDLLK   94 (260)
T ss_dssp             -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH-------TCEEEECCTTSHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc-------CCeEEECCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999987654433322       36789999999999999999999


Q ss_pred             HhcCCccEEEEccccCC-CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         198 KKFRSLNILVLNAGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      +.+|++|+||||||+.. ...+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|
T Consensus        95 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  174 (260)
T 3gem_A           95 TQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATK  174 (260)
T ss_dssp             HHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCSSCHHHHHHH
T ss_pred             HhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCcHhHHHHH
Confidence            99999999999999853 23567889999999999999999999999999876        5666777778899999999


Q ss_pred             ccccCCCCccc------cccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGSY------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..+      ..+++.+.|+...++.....   ...+.... .+++|+++|+|||.+++|
T Consensus       175 aa~~-~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~---~~~~~~~~~~p~~r~~~~edva~~v~~  237 (260)
T 3gem_A          175 AGLE-SLTLSFAARFAPLVKVNGIAPALLMFQPKDDA---AYRANALAKSALGIEPGAEVIYQSLRY  237 (260)
T ss_dssp             HHHH-HHHHHHHHHHTTTCEEEEEEECTTCC------------------CCSCCCCCTHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHCCCCEEEEEeecccccCCCCCH---HHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            9998 766322      25666677777665532211   11112222 238999999999999876

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.97  E-value=6.7e-33  Score=248.51  Aligned_cols=207  Identities=22%  Similarity=0.254  Sum_probs=164.2

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ..++|+||++|||||++|||+++|++|+++|++|++++++ .+.++++.+++...  +.++.++.+|++|++++++++++
T Consensus        25 ~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~  102 (271)
T 3v2g_A           25 TSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA--GGRAVAIRADNRDAEAIEQAIRE  102 (271)
T ss_dssp             TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHH
Confidence            3457999999999999999999999999999999998665 46666777777654  56899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcc------ccceecc-cccchhhhc
Q psy4246         196 YQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA------KLFARQQ-GAATSIYCA  266 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~s------s~~~~~~-~~~~~~y~a  266 (328)
                      +.+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.+      |..+... .++...|++
T Consensus       103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~Y~a  182 (271)
T 3v2g_A          103 TVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVPWPGISLYSA  182 (271)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCCSTTCHHHHH
T ss_pred             HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCCCCCchHHHH
Confidence            999999999999999985  5567889999999999999999999999999997763      3333333 577899999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHH-HHHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++.       .+..+++.+.|+...++.....  ....+... ..+++|+++|+|||.+++|
T Consensus       183 sKaa~~-~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~r~~~pedvA~~v~f  249 (271)
T 3v2g_A          183 SKAALA-GLTKGLARDLGPRGITVNIVHPGSTDTDMNPAD--GDHAEAQRERIATGSYGEPQDIAGLVAW  249 (271)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSS--CSSHHHHHHTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhhhCeEEEEEecCCCcCCccccc--chhHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999999 7663       3345667777776655431110  00111111 1248999999999998876

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.97  E-value=5.4e-32  Score=239.82  Aligned_cols=204  Identities=18%  Similarity=0.244  Sum_probs=144.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...  +.++.++.+|++|+++++++++++.+
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTLA   82 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999998888888765  56899999999999999999999999


Q ss_pred             hcCCccEEEEccccC-----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhh
Q psy4246         199 KFRSLNILVLNAGVF-----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYC  265 (328)
Q Consensus       199 ~~g~id~lvnnAg~~-----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~  265 (328)
                      .++++|+||||||+.     .++.+.+.++|++++++|+.|+++++++++|+|.+.        ||+.+   ......|+
T Consensus        83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~---~~~~~~Y~  159 (253)
T 3qiv_A           83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAA---WLYSNYYG  159 (253)
T ss_dssp             HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------
T ss_pred             HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccc---cCCCchhH
Confidence            999999999999984     345688999999999999999999999999999875        33332   24567899


Q ss_pred             ccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++..       +..+++.+.|+...++........+..+.+.+ .+++|+++|+|+|.+++|
T Consensus       160 asK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  229 (253)
T 3qiv_A          160 LAKVGIN-GLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGTPDDLVGMCLF  229 (253)
T ss_dssp             CCHHHHH-HHHHHHHHHTTTTTEEEEEEEC-------------------------------CCHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHHHHHHHhccCCCCCCCCHHHHHHHHHH
Confidence            9999998 66632       23456666677665553222111112222222 248899999999998865

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.97  E-value=5.8e-32  Score=243.07  Aligned_cols=205  Identities=16%  Similarity=0.146  Sum_probs=160.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC------------hhHHHHHHHHHHhhCCCCeEEEEEcccCCH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS------------LDKANDAISKILTEKPSAQCIAMELNLCRL  186 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~------------~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~  186 (328)
                      .+|+||++|||||++|||+++|++|+++|++|++++|+            .+.+++...++...  +.++.++.+|++|+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~   86 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVRDR   86 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTTCH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCCCH
Confidence            46899999999999999999999999999999999987            66677666666655  56899999999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecc
Q psy4246         187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQ  257 (328)
Q Consensus       187 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~  257 (328)
                      ++++++++++.+++|+||+||||||+....  .+.++|++++++|+.|+++++++++|+|.++         ||+.+..+
T Consensus        87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~  164 (278)
T 3sx2_A           87 ESLSAALQAGLDELGRLDIVVANAGIAPMS--AGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAG  164 (278)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCS--STHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCC--CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCC
Confidence            999999999999999999999999986432  2689999999999999999999999999764         44455554


Q ss_pred             c----ccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHH----------HHhcc
Q psy4246         258 G----AATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS----------VVSTW  316 (328)
Q Consensus       258 ~----~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~r~  316 (328)
                      .    ++...|+++|++++ +++.       .+..+++.+.|+...++........+........          ..+|+
T Consensus       165 ~~~~~~~~~~Y~asKaa~~-~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  243 (278)
T 3sx2_A          165 VGSADPGSVGYVAAKHGVV-GLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPVEV  243 (278)
T ss_dssp             CCCSSHHHHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTTSCSSSCSS
T ss_pred             CccCCCCchHhHHHHHHHH-HHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhhhhhcCcCc
Confidence            4    67889999999998 7663       3346677777777766532111111111111100          01588


Q ss_pred             cccccccccccC
Q psy4246         317 LEETTERGEVVF  328 (328)
Q Consensus       317 g~p~dia~~v~F  328 (328)
                      ++|+|||.+++|
T Consensus       244 ~~p~dvA~~v~~  255 (278)
T 3sx2_A          244 LAPEDVANAVAW  255 (278)
T ss_dssp             BCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999999998876

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.97  E-value=1.2e-31  Score=238.69  Aligned_cols=207  Identities=19%  Similarity=0.186  Sum_probs=167.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++++.+
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   87 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE--GLSVTGTVCHVGKAEDRERLVAMAVN   87 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3588999999999999999999999999999999999998888777777654  55788999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      .+|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++
T Consensus        88 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~s  167 (260)
T 2zat_A           88 LHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVS  167 (260)
T ss_dssp             HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCCCchhHHHH
Confidence            999999999999974   345688999999999999999999999999999764        566666677788999999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++....... ......... .+++|+++|+|||.+++|
T Consensus       168 K~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~v~~  236 (260)
T 2zat_A          168 KTALL-GLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSF  236 (260)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHHHTCSSCBCGGGGHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99998 76633       34566767777666653211000 011111212 237899999999998875

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.97  E-value=5.9e-32  Score=245.51  Aligned_cols=207  Identities=21%  Similarity=0.245  Sum_probs=167.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCC---eEEEEEcccCCHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA---QCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~---~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ++|++|++|||||++|||+++|+.|+++|++|++++|+.+++++..+++...  +.   ++.++.+|++|++++++++++
T Consensus        22 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~~Dv~d~~~v~~~~~~   99 (297)
T 1xhl_A           22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKA--GVPAEKINAVVADVTEASGQDDIINT   99 (297)
T ss_dssp             -CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEEecCCCCHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998888887777654  33   789999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--CC--CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceeccc-ccchh
Q psy4246         196 YQKKFRSLNILVLNAGVF--GL--GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQG-AATSI  263 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~-~~~~~  263 (328)
                      +.+++|++|+||||||+.  .+  +.+.+.++|++++++|+.|+++++++++|+|+++       ||+.+..+. ++...
T Consensus       100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~~  179 (297)
T 1xhl_A          100 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPY  179 (297)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTTSHH
T ss_pred             HHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCCCCCcch
Confidence            999999999999999985  33  5678999999999999999999999999999863       555556666 77889


Q ss_pred             hhccCccccCCCCc-------cccccCccCCCCcccCCHHHHH----H----HHHHHHHHHH-HHHhccccccccccccc
Q psy4246         264 YCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT----K----LWKLSEEMIQ-SVVSTWLEETTERGEVV  327 (328)
Q Consensus       264 y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~-~~~~r~g~p~dia~~v~  327 (328)
                      |+++|++++ .++.       .+..+++.+.|+...++.....    .    ..+..+.... .+++|+++|+|||.+++
T Consensus       180 Y~asKaa~~-~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~  258 (297)
T 1xhl_A          180 YACAKAALD-QYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIV  258 (297)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence            999999998 7663       3456777777887777643211    0    0011111111 13689999999999887


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       259 ~  259 (297)
T 1xhl_A          259 F  259 (297)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.97  E-value=1.1e-31  Score=241.40  Aligned_cols=206  Identities=17%  Similarity=0.220  Sum_probs=166.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++++.+.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999998888777777654  457899999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH--HHhc--------cccceecccccchhhhcc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENA--LIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~--~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|.  |+++        ||+.+..+.++...|+++
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~as  176 (277)
T 2rhc_B           97 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSAS  176 (277)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCCCCccHHHH
Confidence            99999999999985  44567899999999999999999999999998  8654        666666677788999999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHH-----HH-----HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT-----KL-----WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++.....     ..     .+..+.... .+++|+++|+|||.+++|
T Consensus       177 K~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~  254 (277)
T 2rhc_B          177 KHGVV-GFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAY  254 (277)
T ss_dssp             HHHHH-HHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99998 66633       345666777777666532111     00     011111211 137899999999998875

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.97  E-value=7.9e-32  Score=240.25  Aligned_cols=200  Identities=23%  Similarity=0.261  Sum_probs=161.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +.+++||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...  +.++.++.+|++|.++++++++++.
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~  101 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA--GGEAESHACDLSHSDAIAAFATGVL  101 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999988888888765  5689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      +.+|++|+||||||+.   +++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|++
T Consensus       102 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  181 (262)
T 3rkr_A          102 AAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTA  181 (262)
T ss_dssp             HHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCTTCHHHHH
T ss_pred             HhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCchHHH
Confidence            9999999999999983   456788999999999999999999999999999765        66677778888999999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++.+.|+...++..  ..+.      ......|+++|+|||.+++|
T Consensus       182 sKaa~~-~l~~~la~e~~~~gi~v~~v~PG~v~t~~~--~~~~------~~~~~~~~~~p~dvA~~v~~  241 (262)
T 3rkr_A          182 SKWGLN-GLMTSAAEELRQHQVRVSLVAPGSVRTEFG--VGLS------AKKSALGAIEPDDIADVVAL  241 (262)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECCC------------------------CCCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhhcCcEEEEEecCCCcCCcc--cccc------cccccccCCCHHHHHHHHHH
Confidence            999998 66632       334556666666655432  2111      11236789999999998875

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.97  E-value=2.4e-32  Score=244.72  Aligned_cols=206  Identities=19%  Similarity=0.227  Sum_probs=163.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      .++++||++|||||++|||+++|++|+++|++|++++|+ .+..+...+++...  +.++.++.+|++|.++++++++++
T Consensus        24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~  101 (271)
T 4iin_A           24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASESDFIEAIQTI  101 (271)
T ss_dssp             CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999995 44455555555544  568999999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      .+.++++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|+|+++        ||+.+..+.++...|++
T Consensus       102 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  181 (271)
T 4iin_A          102 VQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSA  181 (271)
T ss_dssp             HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHH
T ss_pred             HHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCCCchHhHH
Confidence            99999999999999986  345678999999999999999999999999999875        66666777888999999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH-HHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++.+.|+...++....  +.. ....... .+++|+++|+|+|.+++|
T Consensus       182 sK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~~~~~~p~dvA~~i~~  249 (271)
T 4iin_A          182 SKGGMI-AMSKSFAYEGALRNIRFNSVTPGFIETDMNAN--LKDELKADYVKNIPLNRLGSAKEVAEAVAF  249 (271)
T ss_dssp             HHHHHH-HHHHHHHHHHHTTTEEEEEEEECSBCCC--------------CGGGCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHhCcEEEEEEeCcccCCchhh--hcHHHHHHHHhcCCcCCCcCHHHHHHHHHH
Confidence            999998 66632       34556666777766654221  111 1111111 137899999999998865

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.97  E-value=2e-32  Score=248.44  Aligned_cols=207  Identities=11%  Similarity=0.104  Sum_probs=163.5

Q ss_pred             CCCCCCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       118 ~~~l~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +++|+||++|||||+|  |||+++|++|+++|++|++++|+.+..+.+.. +....  ..+.++.||++|.+++++++++
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dv~d~~~v~~~~~~  101 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDP-LAESL--GVKLTVPCDVSDAESVDNMFKV  101 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HHHHH--TCCEEEECCTTCHHHHHHHHHH
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH-HHHhc--CCeEEEEcCCCCHHHHHHHHHH
Confidence            4578999999999997  99999999999999999999999765444333 33332  2468899999999999999999


Q ss_pred             HHHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchh
Q psy4246         196 YQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSI  263 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~  263 (328)
                      +.+++|+||+||||||+.      .++.+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...
T Consensus       102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~~~~~  181 (296)
T 3k31_A          102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVPHYNV  181 (296)
T ss_dssp             HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTTTTH
T ss_pred             HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCCCchh
Confidence            999999999999999986      456789999999999999999999999999999875      55566677788899


Q ss_pred             hhccCccccCCCCcc-------ccccCccCCCCcccCCHHHH-HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALA-TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++|++++ +++..       +..+++.+.|+...++.... ....+..+.... .+++|+++|+|||.+++|
T Consensus       182 Y~asKaal~-~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~f  254 (296)
T 3k31_A          182 MGVCKAALE-ASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLRRNTTLDDVGGAALY  254 (296)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             hHHHHHHHH-HHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999999999 77633       34667777777666642110 001111122222 248999999999999876

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.97  E-value=2.7e-32  Score=241.49  Aligned_cols=202  Identities=18%  Similarity=0.198  Sum_probs=158.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++|+. +.+++   ++...  +.++.++.+|++|+++++++++++.
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (249)
T 2ew8_A            3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNL--GRRVLTVKCDVSQPGDVEAFGKQVI   77 (249)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhc--CCcEEEEEeecCCHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999987 66554   33322  4578999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  157 (249)
T 2ew8_A           78 STFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYIST  157 (249)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCchhHHHH
Confidence            9999999999999985  455788999999999999999999999999999764        566666677788999999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHH----HHHHHHHHHHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW----KLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++.... ...    +..+... .+++|+++|+|+|.+++|
T Consensus       158 K~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~~~~~~~-~~~~~~~~p~dva~~~~~  226 (249)
T 2ew8_A          158 KAANI-GFTRALASDLGKDGITVNAIAPSLVRTATTEA-SALSAMFDVLPNML-QAIPRLQVPLDLTGAAAF  226 (249)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECCC-------------------CTT-SSSCSCCCTHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHhcCcEEEEEecCcCcCccchh-ccccchhhHHHHhh-CccCCCCCHHHHHHHHHH
Confidence            99998 76633       34566777777665553210 111    1111111 247899999999998875

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.97  E-value=1e-31  Score=241.78  Aligned_cols=206  Identities=19%  Similarity=0.241  Sum_probs=166.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCC---eEEEEEcccCCHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA---QCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~---~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.   ++.++.+|++|+++++++++++
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dv~~~~~v~~~~~~~   80 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKS--GVSEKQVNSVVADVTTEDGQDQIINST   80 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcceEEEEecCCCHHHHHHHHHHH
Confidence            578999999999999999999999999999999999998888877777654  33   7899999999999999999999


Q ss_pred             HHhcCCccEEEEccccCC--C----CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceeccc-ccch
Q psy4246         197 QKKFRSLNILVLNAGVFG--L----GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQG-AATS  262 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~--~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~-~~~~  262 (328)
                      .+++|++|+||||||+..  +    +.+.+.++|++++++|+.|+++++++++|+|.++       ||+.+..+. ++..
T Consensus        81 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  160 (280)
T 1xkq_A           81 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFL  160 (280)
T ss_dssp             HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCCSSH
T ss_pred             HHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCCCCccc
Confidence            999999999999999853  3    5578899999999999999999999999999753       555666665 7788


Q ss_pred             hhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHH----H----HHHHHHHHHH-HHHhcccccccccccc
Q psy4246         263 IYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT----K----LWKLSEEMIQ-SVVSTWLEETTERGEV  326 (328)
Q Consensus       263 ~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~-~~~~r~g~p~dia~~v  326 (328)
                      .|+++|++++ .++..       +..+++.+.|+...++.....    .    ..+..+.... .+++|+++|+|||.++
T Consensus       161 ~Y~asK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v  239 (280)
T 1xkq_A          161 YYAIAKAALD-QYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANII  239 (280)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence            9999999998 76633       446677777887777643211    0    0011111111 1378999999999988


Q ss_pred             cC
Q psy4246         327 VF  328 (328)
Q Consensus       327 ~F  328 (328)
                      +|
T Consensus       240 ~~  241 (280)
T 1xkq_A          240 LF  241 (280)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.97  E-value=2e-32  Score=241.79  Aligned_cols=204  Identities=24%  Similarity=0.298  Sum_probs=162.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++| +.+.+++..+++...  +.++.++.+|++|+++++++++++.+
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (246)
T 2uvd_A            1 MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL--GSDAIAVRADVANAEDVTNMVKQTVD   78 (246)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999 877777777777654  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++|
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  158 (246)
T 2uvd_A           79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAK  158 (246)
T ss_dssp             HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTBHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCCCCchHHHHH
Confidence            999999999999985  345688999999999999999999999999999764        5555666677889999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++.       .+..+++.+.|+...++..  ... ....+.... .+++|+++|+|+|.+++|
T Consensus       159 ~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~  224 (246)
T 2uvd_A          159 AGVI-GLTKTSAKELASRNITVNAIAPGFIATDMT--DVLDENIKAEMLKLIPAAQFGEAQDIANAVTF  224 (246)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECSBGGGCS--SCCCTTHHHHHHHTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhhcCeEEEEEEeccccCcch--hhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9998 6653       2345566666665544311  000 000111111 237899999999998865

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.97  E-value=7.4e-32  Score=240.12  Aligned_cols=206  Identities=18%  Similarity=0.195  Sum_probs=161.8

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      |++|++|||||++|||+++|+.|+++|++|++++|+.+. ++++.+++.... +.++.++.+|++|+++++++++++.++
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999999877 777776665431 347889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|+
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  160 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKH  160 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCCCCchHHHHHH
Confidence            99999999999985  445678999999999999999999999999999764        56666667778899999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHH--HH--------HHHHHHH-HH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT--KL--------WKLSEEM-IQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~-~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..       +..+++.+.|+...++.....  ..        .+..+.+ .. .+++|+++|+|+|.+++|
T Consensus       161 a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~  237 (260)
T 1x1t_A          161 GVV-GFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVF  237 (260)
T ss_dssp             HHH-HHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccCCCCCCcCHHHHHHHHHH
Confidence            998 76632       345666677776666532110  00        0111111 11 237899999999998875

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.97  E-value=4.8e-32  Score=241.30  Aligned_cols=208  Identities=16%  Similarity=0.150  Sum_probs=162.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++....++.++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (260)
T 2z1n_A            3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD   82 (260)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999988888777776433234789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++| +|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++|
T Consensus        83 ~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  161 (260)
T 2z1n_A           83 LGG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMR  161 (260)
T ss_dssp             TTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHT
T ss_pred             hcC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCchhHHHH
Confidence            999 99999999985  345688999999999999999999999999999764        5666666777889999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHH---HH-----HHHHH--HHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEAL---AT-----KLWKL--SEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~---~~-----~~~~~--~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++.+.|+...++...   ..     .....  ...... .+++|+++|+|||.+++|
T Consensus       162 ~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~  238 (260)
T 2z1n_A          162 LPVI-GVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAF  238 (260)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------CCTTSSCCCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Confidence            9998 76632       3455666666654433210   00     00000  111111 137899999999998875

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.97  E-value=9.2e-32  Score=239.40  Aligned_cols=204  Identities=20%  Similarity=0.196  Sum_probs=157.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|++|||||++|||+++|++|+++|++|++++|+.+.++++..++     +.++.++.+|++|.++++++++++.+
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVAADISKEADVDAAVEAALS   79 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999998888777665     45789999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------------cccceecccccchh
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------------AKLFARQQGAATSI  263 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------------ss~~~~~~~~~~~~  263 (328)
                      +++++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|.++            ||..+..+.+....
T Consensus        80 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~  159 (261)
T 3n74_A           80 KFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAW  159 (261)
T ss_dssp             HHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTTCHH
T ss_pred             hcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCCccH
Confidence            999999999999985   334567899999999999999999999999999864            44556667778889


Q ss_pred             hhccCccccCCCCcc-------ccccCccCCCCcccCCHHHH---HHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALA---TKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+++|++++ .++..       +..+++.+.|+...++....   ....+..+..... +++|+++|+|+|.+++|
T Consensus       160 Y~asKaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  234 (261)
T 3n74_A          160 YNATKGWVV-SVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAEAAAF  234 (261)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEEC-------------------------CTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHHhhcCCcCCCcCHHHHHHHHHH
Confidence            999999999 76632       34555666666554442211   0011111112211 37899999999998875

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.97  E-value=8.1e-32  Score=239.11  Aligned_cols=206  Identities=17%  Similarity=0.171  Sum_probs=163.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee-CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++|++|||||++|||+++|++|+++|++|++++ |+.+..++...++...  +.++.++.+|++|.++++++++++.
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~   86 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL--GFDFYASEGNVGDWDSTKQAFDKVK   86 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeeEEEecCCCCHHHHHHHHHHHH
Confidence            357899999999999999999999999999999988 6666666666666554  5689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++
T Consensus        87 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  166 (256)
T 3ezl_A           87 AEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTA  166 (256)
T ss_dssp             HHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCSCCHHHHHH
T ss_pred             HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCCCCcccHHH
Confidence            9999999999999985  456788999999999999999999999999999876        666777788889999999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++.... ...+..+.+... +++|+++|+|+|.+++|
T Consensus       167 K~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  233 (256)
T 3ezl_A          167 KAGIH-GFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA-IRPDVLEKIVATIPVRRLGSPDEIGSIVAW  233 (256)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-SCHHHHHHHHHHSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHhCCEEEEEEECcccCccccc-cCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99998 66632       33456666666665543211 011122222222 38999999999998875

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.97  E-value=1.2e-31  Score=240.95  Aligned_cols=205  Identities=20%  Similarity=0.210  Sum_probs=164.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  + ++.++.+|++|+++++++++++.+
T Consensus        25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~-~~~~~~~Dv~d~~~v~~~~~~~~~  101 (276)
T 2b4q_A           25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY--G-DCQAIPADLSSEAGARRLAQALGE  101 (276)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTS--S-CEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--C-ceEEEEeeCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998888777776432  3 788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------------cccceecccccch-h
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------------AKLFARQQGAATS-I  263 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------------ss~~~~~~~~~~~-~  263 (328)
                      .+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++            ||+.+..+.++.. .
T Consensus       102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~~~~~  181 (276)
T 2b4q_A          102 LSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYA  181 (276)
T ss_dssp             HCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCCSCTT
T ss_pred             hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCCCCccc
Confidence            999999999999985  456788999999999999999999999999999753            4444555556667 9


Q ss_pred             hhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH---HHHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ---SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~g~p~dia~~v~F  328 (328)
                      |+++|++++ .++..       +..+++.+.|+...++..... .....+....   .+++|+++|+|||.+++|
T Consensus       182 Y~asK~a~~-~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~  254 (276)
T 2b4q_A          182 YGPSKAALH-QLSRMLAKELVGEHINVNVIAPGRFPSRMTRHI-ANDPQALEADSASIPMGRWGRPEEMAALAIS  254 (276)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHH-HHCHHHHHHHHHTSTTSSCCCHHHHHHHHHH
T ss_pred             cHHHHHHHH-HHHHHHHHHhcccCeEEEEEEeccCcCcchhhc-chhHHHHHHhhcCCCCCCcCCHHHHHHHHHH
Confidence            999999998 76632       345667777777666532110 0011111211   247899999999998875

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.97  E-value=2.6e-32  Score=247.43  Aligned_cols=208  Identities=20%  Similarity=0.175  Sum_probs=164.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh--hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL--DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .++|+||++|||||++|||+++|++|+++|++|++++|+.  +..+++.+.+...  +.++.++.+|++|.+++++++++
T Consensus        44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~  121 (294)
T 3r3s_A           44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVHK  121 (294)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999999999873  3444444444443  56899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhc
Q psy4246         196 YQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~a  266 (328)
                      +.+++|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|.+.      ||+.+..+.++...|++
T Consensus       122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~a  201 (294)
T 3r3s_A          122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAA  201 (294)
T ss_dssp             HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCTTCHHHHH
T ss_pred             HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCCCchHHHH
Confidence            999999999999999984   345788999999999999999999999999999875      56667777788999999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHHHHHHH-HHHHHHHH-HHHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKL-WKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ +++.       .+..+++.+.|+...++....... .+..+... ..+++|+++|+|||.+++|
T Consensus       202 sKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~  271 (294)
T 3r3s_A          202 TKAAIL-NYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVY  271 (294)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTTTTTSTTSSCBCGGGGHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999999 7763       234666777777766643211100 00111111 1247999999999999876

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.97  E-value=5.5e-32  Score=244.07  Aligned_cols=208  Identities=16%  Similarity=0.194  Sum_probs=162.5

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC------------hhHHHHHHHHHHhhCCCCeEEEEEcccCC
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS------------LDKANDAISKILTEKPSAQCIAMELNLCR  185 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~------------~~~~~~~~~~l~~~~~~~~~~~~~~Dls~  185 (328)
                      +.+|+||++|||||++|||+++|++|+++|++|++++|+            .+.+++...++...  +.++.++.+|++|
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~   82 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRD   82 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTC
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCC
Confidence            346899999999999999999999999999999999987            66666666666554  6689999999999


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceeccc-
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQG-  258 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~-  258 (328)
                      .++++++++++.+++|+||+||||||+.....+.+.++|++++++|+.|+++++++++|+|.+.      ||+.+..+. 
T Consensus        83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~  162 (287)
T 3pxx_A           83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAA  162 (287)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccc
Confidence            9999999999999999999999999997544558899999999999999999999999999665      444333333 


Q ss_pred             ----------ccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHH----------HHHHHHH
Q psy4246         259 ----------AATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKL----------SEEMIQS  311 (328)
Q Consensus       259 ----------~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  311 (328)
                                ++...|+++|++++ .++.       .+..+++.+.|+...++.......+..          .+.....
T Consensus       163 ~~~~~~~~~~~~~~~Y~asK~a~~-~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (287)
T 3pxx_A          163 QPPGAGGPQGPGGAGYSYAKQLVD-SYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAF  241 (287)
T ss_dssp             CCC-----CHHHHHHHHHHHHHHH-HHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHG
T ss_pred             ccccccccCCCccchHHHHHHHHH-HHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhccccccchhHHHHhhh
Confidence                      66788999999999 7663       335667777777776653211111110          0001100


Q ss_pred             -----HHhcccccccccccccC
Q psy4246         312 -----VVSTWLEETTERGEVVF  328 (328)
Q Consensus       312 -----~~~r~g~p~dia~~v~F  328 (328)
                           ..+|+++|+|||.+++|
T Consensus       242 ~~~~~~~~~~~~p~dva~~v~f  263 (287)
T 3pxx_A          242 PAMQAMPTPYVEASDISNAVCF  263 (287)
T ss_dssp             GGGCSSSCSCBCHHHHHHHHHH
T ss_pred             hhhcccCCCCCCHHHHHhhHhe
Confidence                 02789999999999876

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.97  E-value=1.2e-31  Score=242.68  Aligned_cols=205  Identities=17%  Similarity=0.166  Sum_probs=162.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee-CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHH----------
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAMELNLCRLK----------  187 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~----------  187 (328)
                      ++|++|++|||||++|||+++|+.|+++|++|++++ |+.+.++++.+++.... +.++.++.+|++|++          
T Consensus         5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~   83 (291)
T 1e7w_A            5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADGS   83 (291)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCCCC----C
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhc-CCeeEEEEeecCCcccccccccccc
Confidence            468999999999999999999999999999999999 99988888877776332 468999999999999          


Q ss_pred             -------HHHHHHHHHHHhcCCccEEEEccccC--CCCCCCC--------------hhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         188 -------SVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHT--------------EDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       188 -------~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~--------------~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                             +++++++++.+.+|+||+||||||+.  .++.+.+              .++|++++++|+.|+++++++++|
T Consensus        84 ~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~  163 (291)
T 1e7w_A           84 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH  163 (291)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                   99999999999999999999999985  4556778              899999999999999999999999


Q ss_pred             HHHhc--------------cccceecccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH
Q psy4246         245 ALIKG--------------AKLFARQQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK  303 (328)
Q Consensus       245 ~~~~~--------------ss~~~~~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (328)
                      +|+++              ||+.+..+.++...|+++|+++. +++.       .+..+++.+.|+...++. ...  .+
T Consensus       164 ~m~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~-~~~--~~  239 (291)
T 1e7w_A          164 RVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALE-GLTRSAALELAPLQIRVNGVGPGLSVLVD-DMP--PA  239 (291)
T ss_dssp             HHHTSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEESSBCCGG-GSC--HH
T ss_pred             HHHhcCCCCCCCCcEEEEEechhhcCCCCCCchhHHHHHHHH-HHHHHHHHHHHhcCeEEEEEeeCCccCCc-cCC--HH
Confidence            99752              44455666778899999999998 7663       345667777777766654 100  11


Q ss_pred             HHHHHHH-HHHh-cccccccccccccC
Q psy4246         304 LSEEMIQ-SVVS-TWLEETTERGEVVF  328 (328)
Q Consensus       304 ~~~~~~~-~~~~-r~g~p~dia~~v~F  328 (328)
                      ..+.... .+++ |+++|+|||.+++|
T Consensus       240 ~~~~~~~~~p~~~r~~~pedvA~~v~~  266 (291)
T 1e7w_A          240 VWEGHRSKVPLYQRDSSAAEVSDVVIF  266 (291)
T ss_dssp             HHHHHHTTCTTTTSCBCHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCCCCCHHHHHHHHHH
Confidence            1111211 1367 99999999998876

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.97  E-value=1.6e-31  Score=239.32  Aligned_cols=197  Identities=17%  Similarity=0.190  Sum_probs=157.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+++||++|||||++|||+++|++|+++|++|++++|+.+..            ...+..+.+|++|+++++++++++.+
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~~   77 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD------------VNVSDHFKIDVTNEEEVKEAVEKTTK   77 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C------------TTSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc------------cCceeEEEecCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999986542            12567789999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .+|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|
T Consensus        78 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  157 (269)
T 3vtz_A           78 KYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSK  157 (269)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHH
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCChhHHHHH
Confidence            999999999999985  456788999999999999999999999999999874        6667777778899999999


Q ss_pred             ccccCCCCccc------cccCccCCCCcccCCHHHHHHH----------HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGSY------FNNCCRCPPSKAAQDEALATKL----------WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..+      ..+++.+.|+...++.......          .+..+.... .+++|+++|+|||.+++|
T Consensus       158 aa~~-~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  233 (269)
T 3vtz_A          158 HALL-GLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAF  233 (269)
T ss_dssp             HHHH-HHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHSTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999 766332      3556666777666654321110          111122222 238999999999998876

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.97  E-value=2.9e-31  Score=236.11  Aligned_cols=207  Identities=17%  Similarity=0.190  Sum_probs=167.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHH---CCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLAL---HGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~---~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .+|++|++|||||++|||+++|++|++   +|++|++++|+.+.++++.+++....++.++.++.+|++|++++++++++
T Consensus         2 ~~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   81 (259)
T 1oaa_A            2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA   81 (259)
T ss_dssp             CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence            368899999999999999999999999   89999999999998888888887665567899999999999999999999


Q ss_pred             HHH--hcCCcc--EEEEccccCC----CCCC-CChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------cccceec
Q psy4246         196 YQK--KFRSLN--ILVLNAGVFG----LGFS-HTEDGFETTFQVNHLAHFYLTLQLENALIKG----------AKLFARQ  256 (328)
Q Consensus       196 ~~~--~~g~id--~lvnnAg~~~----~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------ss~~~~~  256 (328)
                      +.+  .+|++|  +||||||+..    ++.+ .+.++|++++++|+.|+++++++++|+|+++          ||+.+..
T Consensus        82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~  161 (259)
T 1oaa_A           82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence            988  778999  9999999853    3455 6889999999999999999999999999652          5556667


Q ss_pred             ccccchhhhccCccccCCCCcccc-----ccCccCCCCcccCCHHHHHHHH------HHHHHHHH-HHHhcccccccccc
Q psy4246         257 QGAATSIYCATSLDLSLPVSGSYF-----NNCCRCPPSKAAQDEALATKLW------KLSEEMIQ-SVVSTWLEETTERG  324 (328)
Q Consensus       257 ~~~~~~~y~ask~al~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~r~g~p~dia~  324 (328)
                      +.++...|+++|++++ .++..+.     .+++.+.|+...++..  ....      +..+.... .+++|+++|+|+|.
T Consensus       162 ~~~~~~~Y~asKaa~~-~~~~~la~e~~~i~vn~v~PG~v~T~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~  238 (259)
T 1oaa_A          162 PYKGWGLYCAGKAARD-MLYQVLAAEEPSVRVLSYAPGPLDNDMQ--QLARETSKDPELRSKLQKLKSDGALVDCGTSAQ  238 (259)
T ss_dssp             CCTTCHHHHHHHHHHH-HHHHHHHHHCTTEEEEEEECCSBSSHHH--HHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHH
T ss_pred             CCCCccHHHHHHHHHH-HHHHHHHhhCCCceEEEecCCCcCcchH--HHHhhccCChhHHHHHHHhhhcCCcCCHHHHHH
Confidence            7788899999999998 7663321     4566667777666532  2211      11112222 24789999999999


Q ss_pred             cccC
Q psy4246         325 EVVF  328 (328)
Q Consensus       325 ~v~F  328 (328)
                      +++|
T Consensus       239 ~v~~  242 (259)
T 1oaa_A          239 KLLG  242 (259)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.97  E-value=1.8e-31  Score=237.39  Aligned_cols=203  Identities=19%  Similarity=0.187  Sum_probs=162.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH--HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK--ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~--~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +|++|||||++|||+++|++|+++|++|++++|+.+.  +++..+++...  +.++.++.+|++|+++++++++++.+++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA--DQKAVFVGLDVTDKANFDSAIDEAAEKL   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999877  77777776543  5678999999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~  269 (328)
                      |++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++         ||+.+..+.++...|+++|+
T Consensus        80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  159 (258)
T 3a28_C           80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKF  159 (258)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCCCchhHHHHHH
Confidence            9999999999985  455688999999999999999999999999999753         44455666678889999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHH--HH--------HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT--KL--------WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..       +..+++.+.|+...++.....  .+        .+..+.... .+++|+++|+|||.+++|
T Consensus       160 a~~-~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~  235 (258)
T 3a28_C          160 AVR-GLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPEDVAGLVSF  235 (258)
T ss_dssp             HHH-HHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCCCCCccCHHHHHHHHHH
Confidence            998 76632       345667777777766532210  00        011111111 137899999999998875

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.97  E-value=2.3e-31  Score=236.36  Aligned_cols=201  Identities=17%  Similarity=0.156  Sum_probs=163.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++++.+.+|+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            689999999999999999999999999999999998888877777654  457899999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      +|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++         ||+.+..+.++...|+++|+++
T Consensus        80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~  159 (256)
T 1geg_A           80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAV  159 (256)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCchhHHHHHHHH
Confidence            99999999985  355778999999999999999999999999999763         4555566677888999999999


Q ss_pred             cCCCCcc-------ccccCccCCCCcccCCHHHHHHHH------------HHHHHHHH-HHHhcccccccccccccC
Q psy4246         272 SLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW------------KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      + .++..       +..+++.+.|+...++..  ....            +..+.+.+ .+++|+++|+|||.+++|
T Consensus       160 ~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~  233 (256)
T 1geg_A          160 R-GLTQTAARDLAPLGITVNGYCPGIVKTPMW--AEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSY  233 (256)
T ss_dssp             H-HHHHHHHHHHGGGTEEEEEEEECSBSSHHH--HHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHcCeEEEEEEECCCccchh--hhhhhhccccccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            8 76633       345667777777766532  1111            01111111 136899999999998875

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.97  E-value=3e-31  Score=245.52  Aligned_cols=200  Identities=16%  Similarity=0.117  Sum_probs=162.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-------HHHHHHHHHhhCCCCeEEEEEcccCCHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-------ANDAISKILTEKPSAQCIAMELNLCRLKSVK  190 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  190 (328)
                      ..+|+||++|||||++|||+++|++|+++|++|++++|+.++       +++..+++...  +.++.++.+|++|+++++
T Consensus        40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~  117 (346)
T 3kvo_A           40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV--GGKALPCIVDVRDEQQIS  117 (346)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT--TCEEEEEECCTTCHHHHH
T ss_pred             CCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHH
Confidence            357899999999999999999999999999999999998764       55566666554  678999999999999999


Q ss_pred             HHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecc--c
Q psy4246         191 KFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQ--G  258 (328)
Q Consensus       191 ~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~--~  258 (328)
                      ++++++.+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+  .
T Consensus       118 ~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~~  197 (346)
T 3kvo_A          118 AAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWF  197 (346)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGGT
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCCC
Confidence            99999999999999999999985  556789999999999999999999999999999876        44444444  5


Q ss_pred             ccchhhhccCccccCCCCcc------ccccCccCCCCc-ccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         259 AATSIYCATSLDLSLPVSGS------YFNNCCRCPPSK-AAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       259 ~~~~~y~ask~al~~~~~g~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++...|+++|++++ .++..      +..+++.+.|+. ..++  +.+.+.      ...+++|+++|+|||.+++|
T Consensus       198 ~~~~~Y~aSKaal~-~l~~~la~e~~~gIrvn~v~PG~~i~T~--~~~~~~------~~~~~~r~~~pedvA~~v~~  265 (346)
T 3kvo_A          198 KQHCAYTIAKYGMS-MYVLGMAEEFKGEIAVNALWPKTAIHTA--AMDMLG------GPGIESQCRKVDIIADAAYS  265 (346)
T ss_dssp             SSSHHHHHHHHHHH-HHHHHHHHHTTTTCEEEEEECSBCBCCH--HHHHHC------C--CGGGCBCTHHHHHHHHH
T ss_pred             CCchHHHHHHHHHH-HHHHHHHHHhcCCcEEEEEeCCCccccH--HHHhhc------cccccccCCCHHHHHHHHHH
Confidence            67889999999988 65522      345667777774 3332  222111      11237899999999998875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.97  E-value=7.1e-31  Score=238.79  Aligned_cols=207  Identities=14%  Similarity=0.149  Sum_probs=166.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +.+++||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...  +.++.++.+|++|.++++++++++.
T Consensus        26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~  103 (301)
T 3tjr_A           26 LSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ--GFDAHGVVCDVRHLDEMVRLADEAF  103 (301)
T ss_dssp             CCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999998888888765  5689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                      +.+|+||+||||||+.  +++.+.+.++|++++++|+.|+++++++++|+|.++         ||+.+..+.++...|++
T Consensus       104 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  183 (301)
T 3tjr_A          104 RLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGV  183 (301)
T ss_dssp             HHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHH
T ss_pred             HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCchHHHH
Confidence            9999999999999985  456788999999999999999999999999999863         66677778888999999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHH-HHHHHH---------HHhccccccccccccc
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLS-EEMIQS---------VVSTWLEETTERGEVV  327 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~r~g~p~dia~~v~  327 (328)
                      ||++++ .++.       .+..+++.+.|+...++........... ......         ...++.+|+|+|..++
T Consensus       184 sKaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~  260 (301)
T 3tjr_A          184 AKYGVV-GLAETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTA  260 (301)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHHHHHC----------------------CCCHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhcccCcEEEEEECCccccccccccccccchhhccccChhhhccccccccCCCCHHHHHHHHH
Confidence            999998 6663       2345677778888877654322110000 000000         1235679999998764

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-31  Score=236.31  Aligned_cols=200  Identities=14%  Similarity=0.061  Sum_probs=156.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ||++|||||++|||+++|++|+++|  +.|++++|+.+.++++.+++     +.++.++.+|++|.++++++++++.+++
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY-----GDRFFYVVGDITEDSVLKQLVNAAVKGH   76 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH-----GGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh-----CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            6899999999999999999999985  78999999998887776665     4588999999999999999999999999


Q ss_pred             CCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCcc
Q psy4246         201 RSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      |++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++       ||+.+..+.++...|+++|++
T Consensus        77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  156 (254)
T 3kzv_A           77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNMYFSSWGAYGSSKAA  156 (254)
T ss_dssp             SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCCSSCCSHHHHHHHHH
T ss_pred             CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhccCCCCcchHHHHHHH
Confidence            9999999999984   456788999999999999999999999999999874       666777778889999999999


Q ss_pred             ccCCCCccc-----cccCccCCCCcccCCHHHHH--------HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         271 LSLPVSGSY-----FNNCCRCPPSKAAQDEALAT--------KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++ .++..+     ..+++.+.|+...++.....        ...+..+.... .+++|+++|+|+|.+++|
T Consensus       157 ~~-~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dva~~v~~  227 (254)
T 3kzv_A          157 LN-HFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAK  227 (254)
T ss_dssp             HH-HHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HH-HHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHhcCCcCCcccHHHHHHH
Confidence            98 766432     34556666665554421000        00011112222 248999999999999876

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.97  E-value=1.2e-31  Score=236.75  Aligned_cols=199  Identities=16%  Similarity=0.167  Sum_probs=157.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++     +  +.++.+|++|+++++++++++.++
T Consensus         2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~--~~~~~~D~~~~~~~~~~~~~~~~~   74 (245)
T 1uls_A            2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----G--AHPVVMDVADPASVERGFAEALAH   74 (245)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----T--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----C--CEEEEecCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999987766554332     2  678899999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+. ..+.++...|+++|+
T Consensus        75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~~~~~~Y~asK~  153 (245)
T 1uls_A           75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNLGQANYAASMA  153 (245)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCTTCHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCCCCchhHHHHHH
Confidence            99999999999985  445788999999999999999999999999999764        4545 556677889999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++. .++..       +..+++.+.|+...++..... ..+..+.... .+++|+++|+|+|.+++|
T Consensus       154 a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~p~~~~~~~~dvA~~v~~  218 (245)
T 1uls_A          154 GVV-GLTRTLALELGRWGIRVNTLAPGFIETRMTAKV-PEKVREKAIAATPLGRAGKPLEVAYAALF  218 (245)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS-CHHHHHHHHHTCTTCSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhc-CHHHHHHHHhhCCCCCCcCHHHHHHHHHH
Confidence            998 66632       345666667776655421100 0001111211 237899999999998875

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.97  E-value=8.3e-32  Score=240.73  Aligned_cols=195  Identities=20%  Similarity=0.217  Sum_probs=155.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++|+||++|||||++|||+++|++|+++|++|++++|+.+.+.             ....+.+|++|.++++++++++.
T Consensus        23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~-------------~~~~~~~Dv~~~~~~~~~~~~~~   89 (266)
T 3uxy_A           23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-------------ADLHLPGDLREAAYADGLPGAVA   89 (266)
T ss_dssp             ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC-------------CSEECCCCTTSHHHHHHHHHHHH
T ss_pred             hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-------------hhhccCcCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999865421             22446899999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++
T Consensus        90 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~as  169 (266)
T 3uxy_A           90 AGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLT  169 (266)
T ss_dssp             HHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCTTBHHHHHH
T ss_pred             HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCChHHHHH
Confidence            9999999999999985  456788999999999999999999999999999874        666777788889999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHH--------HHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKL--------SEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++.       .+..+++.+.|+...++..  ......        .+.... .+++|+++|+|||.+++|
T Consensus       170 Kaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~--~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  243 (266)
T 3uxy_A          170 KAALA-SLTQCMGMDHAPQGIRINAVCPNEVNTPML--RTGFAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVVLF  243 (266)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEESSBCCHHH--HHHHHHTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhcCcEEEEEeeCCCcchHh--hhhhhcccccchHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999 7663       2345667777777666532  211111        111111 137899999999999875

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.97  E-value=7.9e-32  Score=241.16  Aligned_cols=206  Identities=16%  Similarity=0.175  Sum_probs=160.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee-CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..+++|++|||||++|||+++|++|+++|++|++++ ++.+.+++...++...  +.++.++.+|++|.++++++++++.
T Consensus        21 ~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~   98 (269)
T 3gk3_A           21 SMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA--GRDFKAYAVDVADFESCERCAEKVL   98 (269)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTT--TCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHH
Confidence            347899999999999999999999999999999998 5655566555555443  5689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.+|+||+||||||+.  .++.+.+.++|++++++|+.|++++++.++|+|++.        ||+.+..+.++...|+++
T Consensus        99 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  178 (269)
T 3gk3_A           99 ADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASA  178 (269)
T ss_dssp             HHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHH
T ss_pred             HHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCCCcchHHHH
Confidence            9999999999999985  456788999999999999999999999999999765        666667777889999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHH-HH-HHHHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSE-EM-IQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++.       .+..+++.+.|+...++...... ..... .. ...+++|+++|+|+|.+++|
T Consensus       179 Kaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~~~~~~~p~dvA~~v~~  246 (269)
T 3gk3_A          179 KAGIH-GFTKTLALETAKRGITVNTVSPGYLATAMVEAVP-QDVLEAKILPQIPVGRLGRPDEVAALIAF  246 (269)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC--------CCSGGGCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhcCCEEEEEecCcccchhhhhhc-hhHHHHHhhhcCCcCCccCHHHHHHHHHH
Confidence            99998 6663       23455666667766554321100 00011 11 11237899999999998865

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.97  E-value=3.1e-31  Score=237.47  Aligned_cols=201  Identities=19%  Similarity=0.224  Sum_probs=161.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++|+.+.++++.+++      .++.++.+|++|+++++++++++.+
T Consensus         5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~~~   78 (270)
T 1yde_A            5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIR   78 (270)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence            4588999999999999999999999999999999999987776654443      1378899999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++       ||+.+..+.++...|+++|
T Consensus        79 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  158 (270)
T 1yde_A           79 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATK  158 (270)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTCHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCCCCcccHHHH
Confidence            999999999999985   345678999999999999999999999999999754       5555566677889999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHH-------HHHHH-HHHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW-------KLSEE-MIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++.+.|+...++..  ....       ..... ....+++|+++|+|||.+++|
T Consensus       159 aa~~-~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~  230 (270)
T 1yde_A          159 GAVT-AMTKALALDESPYGVRVNCISPGNIWTPLW--EELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVF  230 (270)
T ss_dssp             HHHH-HHHHHHHHHHGGGTCEEEEEEECSBCCHHH--HHHHTTSSSHHHHHHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhhhCcEEEEEEeCccccchh--hhhhhcccchHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            9998 76633       446677777777665432  1111       00111 112247999999999998876

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.97  E-value=1.9e-31  Score=238.16  Aligned_cols=210  Identities=10%  Similarity=0.092  Sum_probs=164.7

Q ss_pred             cCCCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       117 ~~~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      |.++|+||++|||||+  +|||+++|++|+++|++|++++|+....+ ...++....++.++.++.||++|.++++++++
T Consensus         1 M~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   79 (266)
T 3oig_A            1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEK-SVHELAGTLDRNDSIILPCDVTNDAEIETCFA   79 (266)
T ss_dssp             CCSCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHHHTSSSCCCEEEECCCSSSHHHHHHHH
T ss_pred             CccccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHH-HHHHHHHhcCCCCceEEeCCCCCHHHHHHHHH
Confidence            3457899999999999  67999999999999999999999865444 34445444444489999999999999999999


Q ss_pred             HHHHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccch
Q psy4246         195 EYQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATS  262 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~  262 (328)
                      ++.+++|+||+||||||+.      .++.+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++..
T Consensus        80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~  159 (266)
T 3oig_A           80 SIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYN  159 (266)
T ss_dssp             HHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTTTH
T ss_pred             HHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccCCCcc
Confidence            9999999999999999985      345678999999999999999999999999999875      5666677778899


Q ss_pred             hhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHH-HHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         263 IYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT-KLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       263 ~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      .|+++|++++ .++.       .+..+++.+.|+...++..... ...+..+..... +++|+++|+|+|.+++|
T Consensus       160 ~Y~asKaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~~  233 (266)
T 3oig_A          160 VMGVAKASLD-ASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAF  233 (266)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHH-HHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            9999999998 7663       2345666666776655421110 001111222222 37899999999998875

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.97  E-value=1.6e-31  Score=238.52  Aligned_cols=201  Identities=19%  Similarity=0.183  Sum_probs=155.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     ..++.++.+|++|.++++++++++.++
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEE   77 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999988776655443     247889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCccc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.      ||+.+. +.++...|+++|+++
T Consensus        78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~~~~~Y~asK~a~  156 (263)
T 2a4k_A           78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAFGLAHYAAGKLGV  156 (263)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHHHHHHHHHCSSHH
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCCCcHHHHHHHHHH
Confidence            99999999999985  456788999999999999999999999999999222      555555 667788999999999


Q ss_pred             cCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         272 SLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      + .++.       .+..+++.+.|+...++..... .....+.... .+++|+++|+|+|.+++|
T Consensus       157 ~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~p~~~~~~p~dvA~~v~~  219 (263)
T 2a4k_A          157 V-GLARTLALELARKGVRVNVLLPGLIQTPMTAGL-PPWAWEQEVGASPLGRAGRPEEVAQAALF  219 (263)
T ss_dssp             H-HHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS-CHHHHHHHHHTSTTCSCBCHHHHHHHHHH
T ss_pred             H-HHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc-CHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            8 6663       2345666666766655431100 0011111211 247899999999998875

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.97  E-value=7.9e-31  Score=235.58  Aligned_cols=208  Identities=17%  Similarity=0.178  Sum_probs=159.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhh-CCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++... ..+.++.++.+|++|+++++++++++.+
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999998888777776321 1245789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCC----ChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccce-ecccccchhh
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSH----TEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFA-RQQGAATSIY  264 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~----~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~-~~~~~~~~~y  264 (328)
                      ++|++|+||||||+.  .++.+.    +.++|++++++|+.|+++++++++|+|+++       ||+.+ ..+.++...|
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y  162 (278)
T 1spx_A           83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYY  162 (278)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCTTSHHH
T ss_pred             HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEecccccccCCCCccHH
Confidence            999999999999985  345566    899999999999999999999999999764       55555 6666778899


Q ss_pred             hccCccccCCCCcc-------ccccCccCCCCcccCCHHHH-----HHH---HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALA-----TKL---WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++..       +..+++.+.|+...++....     ...   .+..+.... .+++|+++|+|||.+++|
T Consensus       163 ~~sK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~  241 (278)
T 1spx_A          163 SIAKAAID-QYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAF  241 (278)
T ss_dssp             HHHHHHHH-HHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCCCcCCCCHHHHHHHHHH
Confidence            99999998 76633       44566667777666553211     000   111122222 137899999999998865

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.97  E-value=8.7e-31  Score=233.51  Aligned_cols=204  Identities=22%  Similarity=0.228  Sum_probs=160.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++     ..++.++.+|++|.++++++++++.+
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~d~~~v~~~~~~~~~   82 (263)
T 3ak4_A            8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-----ENGGFAVEVDVTKRASVDAAMQKAID   82 (263)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----TTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hcCCeEEEEeCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999987766554433     22678899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      ++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.++         ||+.+..+.++...|+++
T Consensus        83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~s  162 (263)
T 3ak4_A           83 ALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSAS  162 (263)
T ss_dssp             HHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCchhHHHH
Confidence            999999999999985  445788999999999999999999999999999753         444555666778899999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-----H-----HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-----L-----WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++......     .     .+..+.... .+++|+++|+|||.+++|
T Consensus       163 K~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~  240 (263)
T 3ak4_A          163 KFAVF-GWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVF  240 (263)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99998 66633       3456666777766554321110     0     011111111 137899999999998865

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.97  E-value=2.2e-31  Score=237.32  Aligned_cols=207  Identities=16%  Similarity=0.157  Sum_probs=152.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++.+|++|||||++|||+++|++|+++|++|++++|+.+...+...++.... +.++.++.||++|+++++++++++.+
T Consensus         3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~   81 (264)
T 3i4f_A            3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMS   81 (264)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999877655444433333322 46899999999999999999999999


Q ss_pred             hcCCccEEEEcccc--C--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccc-ce-ecccccchhh
Q psy4246         199 KFRSLNILVLNAGV--F--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKL-FA-RQQGAATSIY  264 (328)
Q Consensus       199 ~~g~id~lvnnAg~--~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~-~~-~~~~~~~~~y  264 (328)
                      .++++|+||||||+  .  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||. .+ ..+.++...|
T Consensus        82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~~~Y  161 (264)
T 3i4f_A           82 HFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAF  161 (264)
T ss_dssp             HHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCCCCTTCHHH
T ss_pred             HhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccCCCCCCchh
Confidence            99999999999994  2  456788999999999999999999999999999875        333 22 3444567899


Q ss_pred             hccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHH-HHHHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEM-IQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++..       +..+++.+.|+...++..... ..+..+.. ...+++|+++|+|||.+++|
T Consensus       162 ~asKaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~p~~r~~~~~dva~~v~~  231 (264)
T 3i4f_A          162 AAAKVGLV-SLTKTVAYEEAEYGITANMVCPGDIIGEMKEAT-IQEARQLKEHNTPIGRSGTGEDIARTISF  231 (264)
T ss_dssp             HHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCC-HHHHHHC--------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHhhhcCcEEEEEccCCccCccchhc-cHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            99999998 66632       345566666665554421100 01111111 12358999999999998875

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.97  E-value=8.4e-31  Score=236.18  Aligned_cols=207  Identities=21%  Similarity=0.285  Sum_probs=161.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.+. .++..+++...  +.++.++.+|++|.++++++++++.
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~  102 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEEAV  102 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999998654 44555555543  5688999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccc-cchhhhccC
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGA-ATSIYCATS  268 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~-~~~~y~ask  268 (328)
                      +.+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|...      ||+.+..+.+ +...|+++|
T Consensus       103 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK  182 (283)
T 1g0o_A          103 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSK  182 (283)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCSSCHHHHHHH
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCCCCCcchHHHH
Confidence            9999999999999985  445678999999999999999999999999999543      5555555544 378999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHH--H--------HHHHHHHHHH---HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT--K--------LWKLSEEMIQ---SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~---~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++.       .+..+++.+.|+...++.....  .        ..+..+.+..   .+++|+++|+|||.+++|
T Consensus       183 ~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~  261 (283)
T 1g0o_A          183 GAIE-TFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCF  261 (283)
T ss_dssp             HHHH-HHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCCCCCCcCHHHHHHHHHH
Confidence            9998 7663       2345667777777666532110  0        0111122222   247899999999998876

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.97  E-value=1e-31  Score=238.87  Aligned_cols=199  Identities=15%  Similarity=0.105  Sum_probs=151.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|++|++|||||++|||+++|++|+++|++|++++|+.+...   +++     +.++.++.+|++|.++++++++.+.
T Consensus         4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~   75 (257)
T 3tl3_A            4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVV---ADL-----GDRARFAAADVTDEAAVASALDLAE   75 (257)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHH---HHT-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHH---Hhc-----CCceEEEECCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999654332   222     5578999999999999999999887


Q ss_pred             HhcCCccEEEEccccCC------CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh--------c--------ccccee
Q psy4246         198 KKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK--------G--------AKLFAR  255 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--------~--------ss~~~~  255 (328)
                      + +|++|+||||||+..      +..+.+.++|++++++|+.|+++++++++|+|.+        .        ||+.+.
T Consensus        76 ~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  154 (257)
T 3tl3_A           76 T-MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAF  154 (257)
T ss_dssp             H-HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--
T ss_pred             H-hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhc
Confidence            7 999999999999852      2235899999999999999999999999999987        2        666667


Q ss_pred             cccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH-HHHHHHHH-HH-hccccccccccc
Q psy4246         256 QQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQS-VV-STWLEETTERGE  325 (328)
Q Consensus       256 ~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~r~g~p~dia~~  325 (328)
                      .+.++...|+++|++++ .++.       .+..+++.+.|+...++...  .+.+ ..+..... ++ +|+++|+|+|.+
T Consensus       155 ~~~~~~~~Y~asKaa~~-~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~--~~~~~~~~~~~~~~~~~~r~~~p~dva~~  231 (257)
T 3tl3_A          155 DGQIGQAAYSASKGGVV-GMTLPIARDLASHRIRVMTIAPGLFDTPLLA--SLPEEARASLGKQVPHPSRLGNPDEYGAL  231 (257)
T ss_dssp             CCHHHHHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCTTC-----CHHHHHHHHHTSSSSCSCBCHHHHHHH
T ss_pred             CCCCCCccHHHHHHHHH-HHHHHHHHHhcccCcEEEEEEecCccChhhh--hccHHHHHHHHhcCCCCCCccCHHHHHHH
Confidence            77788899999999998 7663       34456777777776665321  1111 11122221 25 899999999998


Q ss_pred             ccC
Q psy4246         326 VVF  328 (328)
Q Consensus       326 v~F  328 (328)
                      ++|
T Consensus       232 v~~  234 (257)
T 3tl3_A          232 AVH  234 (257)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.97  E-value=1e-30  Score=230.70  Aligned_cols=200  Identities=20%  Similarity=0.209  Sum_probs=164.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEccc--CCHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNL--CRLKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl--s~~~~v~~~~~~~  196 (328)
                      .+|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.... ..++.++.+|+  ++.++++++++++
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~d~~~~~~~~~~~~~~   88 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-QPQPLIIALNLENATAQQYRELAARV   88 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-SCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-CCCceEEEeccccCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999988888887653 34566666666  9999999999999


Q ss_pred             HHhcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhh
Q psy4246         197 QKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYC  265 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~  265 (328)
                      .+.+|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++        ||..+..+.++...|+
T Consensus        89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~  168 (247)
T 3i1j_A           89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYG  168 (247)
T ss_dssp             HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCTTCHHHH
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCCCcchhH
Confidence            99999999999999985   345688999999999999999999999999999775        6667777788899999


Q ss_pred             ccCccccCCCCcc--------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSGS--------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++..        ...+++.+.|+...++..  ...      .......|+++|+|+|.+++|
T Consensus       169 ~sK~a~~-~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~--~~~------~~~~~~~~~~~p~dva~~~~~  230 (247)
T 3i1j_A          169 VSKFATE-GLMQTLADELEGVTAVRANSINPGATRTGMR--AQA------YPDENPLNNPAPEDIMPVYLY  230 (247)
T ss_dssp             HHHHHHH-HHHHHHHHHHTTTSSEEEEEEECCCCSSHHH--HHH------STTSCGGGSCCGGGGTHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCcccCccc--hhc------ccccCccCCCCHHHHHHHHHH
Confidence            9999998 66632        344566666776665432  111      011124688999999999876

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.97  E-value=6.5e-31  Score=233.34  Aligned_cols=204  Identities=17%  Similarity=0.187  Sum_probs=160.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.+  ++..+++...  +.++.++.+|++|+++++++++++.++
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~   76 (255)
T 2q2v_A            1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARH--GVKAVHHPADLSDVAQIEALFALAERE   76 (255)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTT--SCCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhc--CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999876  4444555443  457889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++|+
T Consensus        77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  156 (255)
T 2q2v_A           77 FGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKH  156 (255)
T ss_dssp             HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCCCCchhHHHHHH
Confidence            99999999999985  345678999999999999999999999999999764        66666667778899999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHHH--HHHH---H----HHH-H-HHHHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK--LWKL---S----EEM-I-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~--~~~~---~----~~~-~-~~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..       +..+++.+.|+...++......  ..+.   .    ..+ . ..+++|+++|+|||.+++|
T Consensus       157 a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~  232 (255)
T 2q2v_A          157 GVV-GLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLF  232 (255)
T ss_dssp             HHH-HHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTTTCTTCCCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhccCCCCCCcCHHHHHHHHHH
Confidence            998 76633       3456666777776665322100  0111   1    111 1 1136899999999998875

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.97  E-value=7.1e-31  Score=233.26  Aligned_cols=199  Identities=18%  Similarity=0.176  Sum_probs=158.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+. ++..+++.      + .++.+|++|+++++++++++.+
T Consensus         2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~------~-~~~~~D~~~~~~~~~~~~~~~~   73 (256)
T 2d1y_A            2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG------G-AFFQVDLEDERERVRFVEEAAY   73 (256)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT------C-EEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh------C-CEEEeeCCCHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999876 55554441      3 7789999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++|
T Consensus        74 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  153 (256)
T 2d1y_A           74 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASK  153 (256)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCCChhHHHHH
Confidence            999999999999985  456788999999999999999999999999999864        6666666778889999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH----H---HHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL----W---KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++.+.|+...++..  ...    .   +..+.... .+++|+++|+|+|.+++|
T Consensus       154 ~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~  225 (256)
T 2d1y_A          154 GGLV-NLTRSLALDLAPLRIRVNAVAPGAIATEAV--LEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLF  225 (256)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHH--HHHHC--------CHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhhcCeEEEEEeeCCccCchh--hhccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9998 76633       345566677776655432  111    0   00111111 136899999999998865

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.97  E-value=4e-31  Score=237.95  Aligned_cols=206  Identities=12%  Similarity=0.094  Sum_probs=161.7

Q ss_pred             CCCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       118 ~~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +.++++|++|||||+  +|||+++|++|+++|++|++++|+.  ..+..+++....  .++.++.||++|.+++++++++
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~   96 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEF--NPAAVLPCDVISDQEIKDLFVE   96 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGG--CCSEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhc--CCceEEEeecCCHHHHHHHHHH
Confidence            356899999999988  8899999999999999999999987  334455555543  3588999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCC------CCCC-CChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccc
Q psy4246         196 YQKKFRSLNILVLNAGVFG------LGFS-HTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAAT  261 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~~------~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~  261 (328)
                      +.+.+++||+||||||+..      ++.+ .+.++|++++++|+.++++++++++|+|.++       +|+.+..+.++.
T Consensus        97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~  176 (280)
T 3nrc_A           97 LGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSY  176 (280)
T ss_dssp             HHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCTTT
T ss_pred             HHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCCCc
Confidence            9999999999999999853      2334 8899999999999999999999999999864       666677778889


Q ss_pred             hhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         262 SIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       262 ~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ..|+++|++++ .++.       .+..+++.+.|+...++...... ..+..+.... .+++|+++|+|+|.+++|
T Consensus       177 ~~Y~asKaal~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~  251 (280)
T 3nrc_A          177 NTMGVAKASLE-ATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAF  251 (280)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTTCSCCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHH-HHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99999999998 6663       24456666777766665321110 0111112221 238999999999998875

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.97  E-value=2.2e-31  Score=237.79  Aligned_cols=207  Identities=14%  Similarity=0.152  Sum_probs=161.7

Q ss_pred             CCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHH-HHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKA-NDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       119 ~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ++++||++|||||+  +|||+++|++|+++|++|++++|+.... ++..+++.... +.++.++.||++|++++++++++
T Consensus        16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~   94 (267)
T 3gdg_A           16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKD   94 (267)
T ss_dssp             HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHH
T ss_pred             cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHH
Confidence            57899999999999  9999999999999999999999876554 56666665443 56899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceeccc--ccchh
Q psy4246         196 YQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQG--AATSI  263 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~--~~~~~  263 (328)
                      +.+.+++||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        +|+.+..+.  ++...
T Consensus        95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~  174 (267)
T 3gdg_A           95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTS  174 (267)
T ss_dssp             HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSSSCCHH
T ss_pred             HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCCCCCCc
Confidence            999999999999999985  456788999999999999999999999999999874        444444443  46789


Q ss_pred             hhccCccccCCCCcccc------ccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSGSYF------NNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++|++++ .++..+.      .+++.+.|+...++..... ..+..+.... .+++|+++|+|+|.+++|
T Consensus       175 Y~~sK~a~~-~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~~r~~~~~dva~~~~~  244 (267)
T 3gdg_A          175 YNVAKAGCI-HMARSLANEWRDFARVNSISPGYIDTGLSDFV-PKETQQLWHSMIPMGRDGLAKELKGAYVY  244 (267)
T ss_dssp             HHHHHHHHH-HHHHHHHHHTTTTCEEEEEEECCEECSCGGGS-CHHHHHHHHTTSTTSSCEETHHHHHHHHH
T ss_pred             chHHHHHHH-HHHHHHHHHhccCcEEEEEECCccccchhhhC-CHHHHHHHHhcCCCCCCcCHHHHHhHhhe
Confidence            999999998 6663211      4566666776655432100 0011111111 238999999999998875

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.97  E-value=1e-31  Score=238.48  Aligned_cols=201  Identities=20%  Similarity=0.154  Sum_probs=161.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.++
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999988776655544     347889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|+|++.        ||+.+..+.++...|+++|+
T Consensus        77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  156 (254)
T 1hdc_A           77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKW  156 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCchhHHHHHH
Confidence            99999999999985  345678999999999999999999999999999864        56666667778899999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH-HHHHHHH-HHHhccc-ccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQ-SVVSTWL-EETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~r~g-~p~dia~~v~F  328 (328)
                      +++ .++..       +..+++.+.|+...++..  ..... ..+.... .+++|++ +|+|+|.+++|
T Consensus       157 a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~p~~~~~~~~~dvA~~v~~  222 (254)
T 1hdc_A          157 GVR-GLSKLAAVELGTDRIRVNSVHPGMTYTPMT--AETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVK  222 (254)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHH--HHHTCCCSTTSCTTSTTSSCB-CHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhhhcCeEEEEEecccCcCccc--cccchhHHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence            998 66633       345566677776665432  21110 0001111 1368899 99999998865

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.97  E-value=1.9e-31  Score=236.62  Aligned_cols=202  Identities=18%  Similarity=0.177  Sum_probs=164.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.+.
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999988877766665     457889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCcc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|+|++.       ||+.+..+.++...|+++|++
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a  157 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAA  157 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCTTBHHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcCCCCCCccHHHHHHH
Confidence            99999999999985  456788999999999999999999999999999864       566666677788999999999


Q ss_pred             ccCCCCccc---------cccCccCCCCcccCCHHHHHHHH-HHHHH-HH----HHHHhcccccccccccccC
Q psy4246         271 LSLPVSGSY---------FNNCCRCPPSKAAQDEALATKLW-KLSEE-MI----QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~----~~~~~r~g~p~dia~~v~F  328 (328)
                      ++ .++..+         ..+++.+.|+...++..... .. +..++ +.    ..+++|+++|+|+|.+++|
T Consensus       158 ~~-~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~  228 (253)
T 1hxh_A          158 VS-ALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQAS-LPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLF  228 (253)
T ss_dssp             HH-HHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHH-SCTTCCHHHHBCBTTTBTTCCEECHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhc-cchhhhHHHHhhhhccCccCCCCCHHHHHHHHHH
Confidence            98 766432         46667777777665432210 00 00011 11    1246899999999998875

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.97  E-value=5.7e-31  Score=242.21  Aligned_cols=204  Identities=17%  Similarity=0.169  Sum_probs=162.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee-CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHH-----------
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAMELNLCRLK-----------  187 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~-----------  187 (328)
                      +|++|++|||||++|||+++|+.|+++|++|++++ |+.+.++++.+++.... +.++.++.+|++|.+           
T Consensus        43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~  121 (328)
T 2qhx_A           43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADGSA  121 (328)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCC-------C
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCeEEEEEeeCCCchhcccccccccc
Confidence            48899999999999999999999999999999999 99988888877776333 468999999999999           


Q ss_pred             ------HHHHHHHHHHHhcCCccEEEEccccC--CCCCCCC--------------hhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         188 ------SVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHT--------------EDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       188 ------~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~--------------~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                            +++++++++.+.+|+||+||||||+.  .++.+.+              .++|++++++|+.|+++++++++|+
T Consensus       122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  201 (328)
T 2qhx_A          122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR  201 (328)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  99999999999999999999999985  4556777              8999999999999999999999999


Q ss_pred             HHhc--------------cccceecccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHH
Q psy4246         246 LIKG--------------AKLFARQQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKL  304 (328)
Q Consensus       246 ~~~~--------------ss~~~~~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (328)
                      |.++              ||+.+..+.++...|+++|++++ .++.       .+..+++.+.|+...++.   ..+.+.
T Consensus       202 m~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~-~l~~~la~el~~~gIrvn~v~PG~v~T~~---~~~~~~  277 (328)
T 2qhx_A          202 VAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALE-GLTRSAALELAPLQIRVNGVGPGLSVLVD---DMPPAV  277 (328)
T ss_dssp             HHHSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEESSBSCCC---CSCHHH
T ss_pred             HHhcCCcCCCCCcEEEEECchhhccCCCCcHHHHHHHHHHH-HHHHHHHHHHhhcCcEEEEEecCcccCCc---cccHHH
Confidence            9752              44455666678899999999998 7663       234566777777666654   111111


Q ss_pred             HHHHHH-HHHh-cccccccccccccC
Q psy4246         305 SEEMIQ-SVVS-TWLEETTERGEVVF  328 (328)
Q Consensus       305 ~~~~~~-~~~~-r~g~p~dia~~v~F  328 (328)
                      .+.... .+++ |+++|+|||.+++|
T Consensus       278 ~~~~~~~~p~~~r~~~pedvA~~v~~  303 (328)
T 2qhx_A          278 WEGHRSKVPLYQRDSSAAEVSDVVIF  303 (328)
T ss_dssp             HHHHHTTCTTTTSCBCHHHHHHHHHH
T ss_pred             HHHHHhhCCCCCCCCCHHHHHHHHHH
Confidence            112211 2367 99999999998876

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.97  E-value=6e-31  Score=235.14  Aligned_cols=206  Identities=13%  Similarity=0.066  Sum_probs=159.4

Q ss_pred             CCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      .++++|++|||||+  +|||+++|++|+++|++|++++|+... .+..+++....  .++.++.||++|+++++++++++
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~   86 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRF-KDRITEFAAEF--GSELVFPCDVADDAQIDALFASL   86 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHHHHHT--TCCCEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhh-HHHHHHHHHHc--CCcEEEECCCCCHHHHHHHHHHH
Confidence            46899999999998  999999999999999999999998543 34445555543  35888999999999999999999


Q ss_pred             HHhcCCccEEEEccccC------CCCCC-CChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchh
Q psy4246         197 QKKFRSLNILVLNAGVF------GLGFS-HTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSI  263 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~------~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~  263 (328)
                      .+++|+||+||||||+.      .++.+ .+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  166 (271)
T 3ek2_A           87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNT  166 (271)
T ss_dssp             HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTH
T ss_pred             HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCCCccc
Confidence            99999999999999985      34455 8999999999999999999999999999765      55566677788899


Q ss_pred             hhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++|++++ .++..       +..+++.+.|+...++...... ..+..+.... .+++|+++|+|+|.+++|
T Consensus       167 Y~asKaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~pedva~~i~~  239 (271)
T 3ek2_A          167 MGLAKAALE-ASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAF  239 (271)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHH-HHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence            999999999 76632       3455666667666554321100 1111122222 237999999999998875

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.97  E-value=6.8e-31  Score=237.37  Aligned_cols=205  Identities=19%  Similarity=0.187  Sum_probs=158.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCC----HHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCR----LKSVKKFA  193 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~----~~~v~~~~  193 (328)
                      .+|+||++|||||++|||+++|++|+++|++|++++|+. +.++++.+++.... +.++.++.+|++|    .+++++++
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~v~~~~   97 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-SNTAVVCQADLTNSNVLPASCEEII   97 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSCSTTHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc-CCceEEEEeecCCccCCHHHHHHHH
Confidence            468999999999999999999999999999999999998 77777777775332 5688999999999    99999999


Q ss_pred             HHHHHhcCCccEEEEccccC--CCC-----CC-----CChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------------
Q psy4246         194 EEYQKKFRSLNILVLNAGVF--GLG-----FS-----HTEDGFETTFQVNHLAHFYLTLQLENALIKG------------  249 (328)
Q Consensus       194 ~~~~~~~g~id~lvnnAg~~--~~~-----~~-----~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------------  249 (328)
                      +++.+.+|++|+||||||+.  .++     .+     .+.++|++++++|+.|+++++++++|+|+++            
T Consensus        98 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv  177 (288)
T 2x9g_A           98 NSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIV  177 (288)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEE
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEE
Confidence            99999999999999999985  333     45     7889999999999999999999999999752            


Q ss_pred             --cccceecccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcc-cc
Q psy4246         250 --AKLFARQQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTW-LE  318 (328)
Q Consensus       250 --ss~~~~~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~-g~  318 (328)
                        ||+.+..+.++...|+++|++++ .++.       .+..+++.+.|+...++. ..  ..+..+.+.. .+++|+ ++
T Consensus       178 ~isS~~~~~~~~~~~~Y~asKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~~--~~~~~~~~~~~~p~~r~~~~  253 (288)
T 2x9g_A          178 NLCDAMVDQPCMAFSLYNMGKHALV-GLTQSAALELAPYGIRVNGVAPGVSLLPV-AM--GEEEKDKWRRKVPLGRREAS  253 (288)
T ss_dssp             EECCTTTTSCCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEESSCSCCT-TS--CHHHHHHHHHTCTTTSSCCC
T ss_pred             EEecccccCCCCCCchHHHHHHHHH-HHHHHHHHHhhccCeEEEEEEeccccCcc-cc--ChHHHHHHHhhCCCCCCCCC
Confidence              44455566677889999999998 6663       234566667777665554 10  0111122222 247899 99


Q ss_pred             cccccccccC
Q psy4246         319 ETTERGEVVF  328 (328)
Q Consensus       319 p~dia~~v~F  328 (328)
                      |+|+|.+++|
T Consensus       254 pedvA~~v~~  263 (288)
T 2x9g_A          254 AEQIADAVIF  263 (288)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.97  E-value=1.6e-30  Score=233.89  Aligned_cols=203  Identities=20%  Similarity=0.174  Sum_probs=156.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++.+|++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|++|.++++++++++.++
T Consensus         2 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (281)
T 3m1a_A            2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLAR   76 (281)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999999988877655443     457899999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|+|++.        ||+.+..+.++...|+++|+
T Consensus        77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~  156 (281)
T 3m1a_A           77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKA  156 (281)
T ss_dssp             HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHH
T ss_pred             CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCCCCchHHHHHHH
Confidence            99999999999985  567789999999999999999999999999999875        66677778888999999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCH-------------HHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDE-------------ALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..       +..+++.+.|+...++.             .+.........-......+|+++|+|+|.+++|
T Consensus       157 a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~  234 (281)
T 3m1a_A          157 ALE-QLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRL  234 (281)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHHC-----CBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHhhccCCCCCCHHHHHHHHHH
Confidence            998 66532       34455555555433321             111111111111122237889999999988754

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.97  E-value=8.7e-31  Score=234.70  Aligned_cols=205  Identities=16%  Similarity=0.144  Sum_probs=157.2

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .++|++|||||++|||+++|++|+++|++|+++ .|+.+.+++..+++...  +.++.++.+|++|.++++++++++.+.
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999887 77877777777777654  568999999999999999999999999


Q ss_pred             cCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----------cccceecccc-cchhh
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----------AKLFARQQGA-ATSIY  264 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----------ss~~~~~~~~-~~~~y  264 (328)
                      +|+||+||||||+.   .++.+.+.++|++++++|+.|+++++++++|.|.+.           ||+.+..+.+ ....|
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y  181 (272)
T 4e3z_A          102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDY  181 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTTTCHHH
T ss_pred             CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCCCcchh
Confidence            99999999999985   445678999999999999999999999999999762           4544545444 56789


Q ss_pred             hccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++..       +..+++.+.|+...++........+....... .+++|+++|+|+|.+++|
T Consensus       182 ~asKaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~edvA~~i~~  252 (272)
T 4e3z_A          182 AASKAAID-TFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGMPEEVADAILY  252 (272)
T ss_dssp             HHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBC------------------CCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChHHHHHHhhcCCcCCCcCHHHHHHHHHH
Confidence            99999998 66532       34556666677666654322112222222222 237899999999998875

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.5e-30  Score=231.70  Aligned_cols=205  Identities=17%  Similarity=0.163  Sum_probs=158.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.+.
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T 2qq5_A            2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL--GGQCVPVVCDSSQESEVRSLFEQVDRE   79 (260)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--SSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999999998888887777665  568999999999999999999999886


Q ss_pred             -cCCccEEEEccc--cC-------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccc
Q psy4246         200 -FRSLNILVLNAG--VF-------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAAT  261 (328)
Q Consensus       200 -~g~id~lvnnAg--~~-------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~  261 (328)
                       +|+||+||||||  +.       .++.+.+.++|++++++|+.+++++++.++|+|.+.        ||+.+..+ ...
T Consensus        80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-~~~  158 (260)
T 2qq5_A           80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY-MFN  158 (260)
T ss_dssp             HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC-CSS
T ss_pred             cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC-CCC
Confidence             899999999995  32       456788899999999999999999999999999764        44443332 346


Q ss_pred             hhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHH-HHHHH-HHHH---HHHHHhcccccccccccccC
Q psy4246         262 SIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT-KLWKL-SEEM---IQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       262 ~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~---~~~~~~r~g~p~dia~~v~F  328 (328)
                      ..|+++|++++ .++.       .+..+++.+.|+...++..... ..... ....   ...+++|+++|+|+|.+++|
T Consensus       159 ~~Y~asK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~va~~v~~  236 (260)
T 2qq5_A          159 VPYGVGKAACD-KLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVA  236 (260)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHGGGTCEEEEEECCCSCTTTC----------------------CHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHH-HHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccccchhHHHHHHhhhccCCCHHHHHHHHHH
Confidence            78999999999 7763       3456677777877666532110 00000 0011   12246788999999998876

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.96  E-value=2.1e-31  Score=233.41  Aligned_cols=197  Identities=19%  Similarity=0.227  Sum_probs=159.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++|++|||||++|||+++|++|+++|++|++++|+.+++++...++.... +.++.++.+|++|+++++++++++.+.+|
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            47899999999999999999999999999999999999888888876433 56899999999999999999999999999


Q ss_pred             CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCcccc
Q psy4246         202 SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       202 ~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      ++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.       +|..+..+.+....|+++|++++
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sKaa~~  159 (235)
T 3l77_A           80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLIPYGGGYVSTKWAAR  159 (235)
T ss_dssp             SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccCCCcchHHHHHHHHH
Confidence            999999999985  556788999999999999999999999999999654       45556666777889999999998


Q ss_pred             CCCCccc-----cccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         273 LPVSGSY-----FNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                       .++..+     ..+++.+.|+...++....  ...      .....|+++|+|+|.+++|
T Consensus       160 -~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~--~~~------~~~~~~~~~p~dva~~v~~  211 (235)
T 3l77_A          160 -ALVRTFQIENPDVRFFELRPGAVDTYFGGS--KPG------KPKEKGYLKPDEIAEAVRC  211 (235)
T ss_dssp             -HHHHHHHHHCTTSEEEEEEECSBSSSTTTC--CSC------CCGGGTCBCHHHHHHHHHH
T ss_pred             -HHHHHHhhcCCCeEEEEEeCCccccccccc--cCC------cccccCCCCHHHHHHHHHH
Confidence             666432     3455666666665543211  000      0013478999999988875

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.96  E-value=8.9e-31  Score=234.02  Aligned_cols=206  Identities=14%  Similarity=0.135  Sum_probs=162.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..++.+|++|||||++|||+++|++|+++|++|+++ .|+.+.+++..+++...  +.++.++.+|++|+++++++++++
T Consensus        21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   98 (267)
T 4iiu_A           21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN--GGNGRLLSFDVANREQCREVLEHE   98 (267)
T ss_dssp             ----CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHH
Confidence            446889999999999999999999999999999664 57777777777777665  568999999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhh
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYC  265 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~  265 (328)
                      .+.++++|+||||||+.  .++.+.+.++|++++++|+.|++++++.+++.|.+.         ||+.+..+.++...|+
T Consensus        99 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  178 (267)
T 4iiu_A           99 IAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQVNYS  178 (267)
T ss_dssp             HHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCTTCHHHH
T ss_pred             HHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCCCCchhH
Confidence            99999999999999985  445688999999999999999999999999988632         6666777788899999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++.       .+..+++.+.|+...++.....  .+..+.... .+++|+++|+|+|.+++|
T Consensus       179 asKaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~p~~~~~~~edva~~~~~  246 (267)
T 4iiu_A          179 AAKAGII-GATKALAIELAKRKITVNCIAPGLIDTGMIEME--ESALKEAMSMIPMKRMGQAEEVAGLASY  246 (267)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC--HHHHHHHHHTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHhhcCeEEEEEEEeeecCCccccc--HHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999998 6662       2345566666666555422110  111112222 248999999999998875

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.96  E-value=7.9e-31  Score=235.33  Aligned_cols=204  Identities=15%  Similarity=0.182  Sum_probs=158.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCH----HHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRL----KSVKKFAE  194 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~----~~v~~~~~  194 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++| +.+.++++.+++.... +.++.++.+|++|.    ++++++++
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIID   86 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHH
Confidence            478999999999999999999999999999999999 8888888777776542 35789999999999    99999999


Q ss_pred             HHHHhcCCccEEEEccccC--CCCCCCCh-----------hHHHHHHhhhhHHHHHHHHHHHHHHHh---------c---
Q psy4246         195 EYQKKFRSLNILVLNAGVF--GLGFSHTE-----------DGFETTFQVNHLAHFYLTLQLENALIK---------G---  249 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~--~~~~~~~~-----------~~~~~~~~vN~~g~~~l~~~~~~~~~~---------~---  249 (328)
                      ++.+.+|++|+||||||+.  .++.+.+.           ++|++++++|+.|+++++++++|+|.+         .   
T Consensus        87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~  166 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN  166 (276)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred             HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence            9999999999999999985  44567777           999999999999999999999999862         1   


Q ss_pred             -cccceecccccchhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhc-cccc
Q psy4246         250 -AKLFARQQGAATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVST-WLEE  319 (328)
Q Consensus       250 -ss~~~~~~~~~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r-~g~p  319 (328)
                       ||+.+..+.++...|+++|++++ .++..       +..+++.+.|+...++.....   +..+.... .+++| +++|
T Consensus       167 isS~~~~~~~~~~~~Y~asK~a~~-~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~p~~r~~~~~  242 (276)
T 1mxh_A          167 LCDAMTDLPLPGFCVYTMAKHALG-GLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQ---ETQEEYRRKVPLGQSEASA  242 (276)
T ss_dssp             ECCGGGGSCCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEESSBSCCSSSCH---HHHHHHHTTCTTTSCCBCH
T ss_pred             ECchhhcCCCCCCeehHHHHHHHH-HHHHHHHHHHhhcCeEEEEEecCcccCCccCCH---HHHHHHHhcCCCCCCCCCH
Confidence             55566667778899999999998 66632       345667777776666510001   11111111 24788 9999


Q ss_pred             ccccccccC
Q psy4246         320 TTERGEVVF  328 (328)
Q Consensus       320 ~dia~~v~F  328 (328)
                      +|+|.+++|
T Consensus       243 ~dva~~v~~  251 (276)
T 1mxh_A          243 AQIADAIAF  251 (276)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.96  E-value=1.3e-30  Score=241.36  Aligned_cols=205  Identities=10%  Similarity=0.001  Sum_probs=160.8

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHH-CCCeEEEeeCChhHHH------------HHHHHHHhhCCCCeEEEEEcccCCHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLAL-HGCRVILACRSLDKAN------------DAISKILTEKPSAQCIAMELNLCRLK  187 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~-~Ga~Vi~~~r~~~~~~------------~~~~~l~~~~~~~~~~~~~~Dls~~~  187 (328)
                      -.+|++|||||++|||+++|+.|++ +|++|++++|+.+..+            ...+++...  +.++..+.+|++|++
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~--G~~a~~i~~Dvtd~~  122 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQK--GLYAKSINGDAFSDE  122 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTSHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhc--CCceEEEECCCCCHH
Confidence            4689999999999999999999999 9999999998754321            122233333  568899999999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccC---------------CCC---------------------CCCChhHHHHHHhhh
Q psy4246         188 SVKKFAEEYQKKFRSLNILVLNAGVF---------------GLG---------------------FSHTEDGFETTFQVN  231 (328)
Q Consensus       188 ~v~~~~~~~~~~~g~id~lvnnAg~~---------------~~~---------------------~~~~~~~~~~~~~vN  231 (328)
                      +++++++++.++||+||+||||||+.               .++                     .++++++|++++++|
T Consensus       123 ~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn  202 (405)
T 3zu3_A          123 IKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVM  202 (405)
T ss_dssp             HHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhh
Confidence            99999999999999999999999973               333                     668999999999999


Q ss_pred             hHHHH-HHHHHHHHH-HHhc-------cccceecccccc--hhhhccCccccCCCC-------ccc-cccCccCCCCccc
Q psy4246         232 HLAHF-YLTLQLENA-LIKG-------AKLFARQQGAAT--SIYCATSLDLSLPVS-------GSY-FNNCCRCPPSKAA  292 (328)
Q Consensus       232 ~~g~~-~l~~~~~~~-~~~~-------ss~~~~~~~~~~--~~y~ask~al~~~~~-------g~~-~~~~~~~~~~~~~  292 (328)
                      +.+.| ++++++++. |.+.       ||+.+..+.+..  ..|+++|+++. +++       +.+ .+++|.+.|+...
T Consensus       203 ~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p~~~~~aY~AaKaal~-~ltrsLA~Ela~~~GIRVNaVaPG~i~  281 (405)
T 3zu3_A          203 GGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDIYWNGSIGAAKKDLD-QKVLAIRESLAAHGGGDARVSVLKAVV  281 (405)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHH-HHHHHHHHHHHTTTSCEEEEEECCCCC
T ss_pred             chhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCCCccchHHHHHHHHHH-HHHHHHHHHhCcccCeEEEEEEeCCCc
Confidence            99998 788887754 4432       555666666766  89999999999 777       456 7788888888877


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         293 QDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++....-............+|+|+|+|||+++.++|
T Consensus       282 T~~s~~ip~~p~y~~~l~~~mkr~G~~Ed~a~~i~~  317 (405)
T 3zu3_A          282 SQASSAIPMMPLYLSLLFKVMKEKGTHEGCIEQVYS  317 (405)
T ss_dssp             CHHHHTSTTHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             CchhhcCCCCcHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            764332211222233444479999999999998865

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.96  E-value=6.6e-31  Score=235.16  Aligned_cols=204  Identities=14%  Similarity=0.104  Sum_probs=157.0

Q ss_pred             CCCCCceEEEcCC--CCCccHHHHHHHHHCCCeEEEeeCChhHH-HHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDKA-NDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       119 ~~l~~k~~lITGa--s~GIG~a~a~~la~~Ga~Vi~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .+|++|++|||||  ++|||+++|++|+++|++|++++|+.++. +++.    ... +.++.++.+|++|++++++++++
T Consensus         3 ~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~----~~~-~~~~~~~~~Dv~~~~~v~~~~~~   77 (269)
T 2h7i_A            3 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRIT----DRL-PAKAPLLELDVQNEEHLASLAGR   77 (269)
T ss_dssp             CTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHH----TTS-SSCCCEEECCTTCHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHH----Hhc-CCCceEEEccCCCHHHHHHHHHH
Confidence            4689999999999  99999999999999999999999987652 3332    222 34688899999999999999999


Q ss_pred             HHHhcC---CccEEEEccccCC-------CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccccc-----eeccccc
Q psy4246         196 YQKKFR---SLNILVLNAGVFG-------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLF-----ARQQGAA  260 (328)
Q Consensus       196 ~~~~~g---~id~lvnnAg~~~-------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~~-----~~~~~~~  260 (328)
                      +.+.+|   ++|+||||||+..       ++.+.+.++|++++++|+.|+++++++++|+|.+.+++.     +..+.+.
T Consensus        78 ~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~  157 (269)
T 2h7i_A           78 VTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPA  157 (269)
T ss_dssp             HHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCTT
T ss_pred             HHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccccCc
Confidence            999999   9999999999853       456789999999999999999999999999997654441     1244567


Q ss_pred             chhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHH-------HHHH----HHHHHHHHH-HHh-cccccc
Q psy4246         261 TSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALA-------TKLW----KLSEEMIQS-VVS-TWLEET  320 (328)
Q Consensus       261 ~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~-~~~-r~g~p~  320 (328)
                      ...|+++|++++ .++..       +..+++.+.|+...++....       +...    +..+..... +++ |+++|+
T Consensus       158 ~~~Y~asKaa~~-~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~p~  236 (269)
T 2h7i_A          158 YNWMTVAKSALE-SVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDAT  236 (269)
T ss_dssp             THHHHHHHHHHH-HHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCH
T ss_pred             hHHHHHHHHHHH-HHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccCCcccCCCCHH
Confidence            889999999998 76633       34566777777766543211       0000    011112222 377 799999


Q ss_pred             cccccccC
Q psy4246         321 TERGEVVF  328 (328)
Q Consensus       321 dia~~v~F  328 (328)
                      |||.+++|
T Consensus       237 dvA~~v~~  244 (269)
T 2h7i_A          237 PVAKTVCA  244 (269)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999876

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.96  E-value=5.1e-31  Score=241.98  Aligned_cols=204  Identities=19%  Similarity=0.190  Sum_probs=161.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC----------hhHHHHHHHHHHhhCCCCeEEEEEcccCCHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS----------LDKANDAISKILTEKPSAQCIAMELNLCRLK  187 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~----------~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~  187 (328)
                      +.+|+||++|||||++|||+++|++|+++|++|++++|+          .+.+++..+++...  +.++.++.+|++|.+
T Consensus        22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~   99 (322)
T 3qlj_A           22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA--GGEAVADGSNVADWD   99 (322)
T ss_dssp             CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT--TCEEEEECCCTTSHH
T ss_pred             hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc--CCcEEEEECCCCCHH
Confidence            456899999999999999999999999999999999987          67777777777665  568999999999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cc
Q psy4246         188 SVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------------AK  251 (328)
Q Consensus       188 ~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss  251 (328)
                      +++++++++.+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.              ||
T Consensus       100 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS  179 (322)
T 3qlj_A          100 QAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSS  179 (322)
T ss_dssp             HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcC
Confidence            99999999999999999999999985  455788999999999999999999999999999752              55


Q ss_pred             cceecccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccc
Q psy4246         252 LFARQQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERG  324 (328)
Q Consensus       252 ~~~~~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~  324 (328)
                      +.+..+.++...|+++|++++ .++.       .+..+++.+.|+ ..++..... ..+....  .....++++|+|||.
T Consensus       180 ~~~~~~~~~~~~Y~asKaal~-~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~-~~~~~~~--~~~~~~~~~pedva~  254 (322)
T 3qlj_A          180 GAGLQGSVGQGNYSAAKAGIA-TLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETV-FAEMMAT--QDQDFDAMAPENVSP  254 (322)
T ss_dssp             HHHHHCBTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCS-CCC----------CCTTCGGGTHH
T ss_pred             HHHccCCCCCccHHHHHHHHH-HHHHHHHHHhcccCcEEEEecCC-CCCccchhh-hhhhhhc--cccccCCCCHHHHHH
Confidence            566677788899999999999 7763       344566666666 332211000 0000000  011246789999999


Q ss_pred             cccC
Q psy4246         325 EVVF  328 (328)
Q Consensus       325 ~v~F  328 (328)
                      +++|
T Consensus       255 ~v~~  258 (322)
T 3qlj_A          255 LVVW  258 (322)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.96  E-value=3.6e-31  Score=235.80  Aligned_cols=199  Identities=17%  Similarity=0.187  Sum_probs=160.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.     .++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~   77 (260)
T 1nff_A            3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVT   77 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----cCceEEEecCCCHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999887776655542     2578899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++|
T Consensus        78 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  157 (260)
T 1nff_A           78 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATK  157 (260)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCCCchhHHHHH
Confidence            999999999999985  456788999999999999999999999999999764        5656666677888999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++.+.|+...++...   ...  +.....+++|+++|+|+|.+++|
T Consensus       158 ~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---~~~--~~~~~~~~~~~~~~~dvA~~v~~  218 (260)
T 1nff_A          158 FAVR-GLTKSTALELGPSGIRVNSIHPGLVKTPMTD---WVP--EDIFQTALGRAAEPVEVSNLVVY  218 (260)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECCBCSGGGT---TSC--TTCSCCSSSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhCccCcEEEEEEeCCCCCCccc---cch--hhHHhCccCCCCCHHHHHHHHHH
Confidence            9998 66633       3455666667665554321   000  00101246899999999988765

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.96  E-value=6.6e-30  Score=227.95  Aligned_cols=207  Identities=19%  Similarity=0.184  Sum_probs=148.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|+++.++++++++++.+
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   87 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTVSS   87 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999998888877777654  45789999999999999999999999


Q ss_pred             hc-CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KF-RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~-g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      .+ +++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++
T Consensus        88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~s  167 (266)
T 1xq1_A           88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSAT  167 (266)
T ss_dssp             HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHHHHH
T ss_pred             HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCCCCCchHHHH
Confidence            99 9999999999985  456778999999999999999999999999999764        555556666778899999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHH-HHHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++...........+... ..+++|+++|+|+|.+++|
T Consensus       168 K~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  235 (266)
T 1xq1_A          168 KGALN-QLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAF  235 (266)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTCEEEEEECCSCC-------------------------CCGGGGHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99998 66633       2345566666665554321110001111111 2247899999999998764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.96  E-value=2.3e-31  Score=237.06  Aligned_cols=194  Identities=19%  Similarity=0.225  Sum_probs=154.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|++|||||++|||+++|++|+++|++|++++|+.+...           ..++.++.+|++|+++++++++++.+
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dv~d~~~v~~~~~~~~~   92 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA-----------DPDIHTVAGDISKPETADRIVREGIE   92 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS-----------STTEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4588999999999999999999999999999999999865421           33788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee--cccccchhhhc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR--QQGAATSIYCA  266 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~--~~~~~~~~y~a  266 (328)
                      ++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        +|..+.  .+..+...|++
T Consensus        93 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~  172 (260)
T 3un1_A           93 RFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASL  172 (260)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBTTCCCHHHHH
T ss_pred             HCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCCCCccHHHHH
Confidence            999999999999985  456788999999999999999999999999999875        333222  33445688999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++.+.|+...++....+    ..+.... .+++|+++|+|||.+++|
T Consensus       173 sKaa~~-~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----~~~~~~~~~p~~r~~~~~dva~av~~  237 (260)
T 3un1_A          173 TKGGLN-AVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE----THSTLAGLHPVGRMGEIRDVVDAVLY  237 (260)
T ss_dssp             HHHHHH-HHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG----GHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH----HHHHHhccCCCCCCcCHHHHHHHHHH
Confidence            999998 76632       345666677776665532111    0111111 248999999999999875

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.96  E-value=1.9e-30  Score=231.63  Aligned_cols=193  Identities=22%  Similarity=0.204  Sum_probs=156.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|+.|+++|++|++++|+.+.             +.++.++.+|++|.++++++++++.++
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~   71 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-------------EAKYDHIECDVTNPDQVKASIDHIFKE   71 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-------------SCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-------------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999998653             346788999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|+
T Consensus        72 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  151 (264)
T 2dtx_A           72 YGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKH  151 (264)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCCCchhHHHHHH
Confidence            99999999999985  456788999999999999999999999999999764        56666667778899999999


Q ss_pred             cccCCCCcccc------ccCccCCCCcccCCHHHHHHHH------------HHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGSYF------NNCCRCPPSKAAQDEALATKLW------------KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..+.      .+++.+.|+...++..  ....            +..+.... .+++|+++|+|||.+++|
T Consensus       152 a~~-~~~~~la~e~~~~i~vn~v~PG~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~  226 (264)
T 2dtx_A          152 AVI-GLTKSIALDYAPLLRCNAVCPATIDTPLV--RKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAF  226 (264)
T ss_dssp             HHH-HHHHHHHHHHTTTSEEEEEEECSBCSHHH--HHHHHHHHCSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhcCCcEEEEEEeCCCcCcch--hhhhhcccccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            998 6663321      5666677776655432  1111            11112211 137899999999998875

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.96  E-value=9e-30  Score=233.37  Aligned_cols=176  Identities=22%  Similarity=0.283  Sum_probs=152.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++++||++|||||++|||+++|++|+++|++|++++|+.++++++..++.....+.++.++.+|++|.++++++++.+.
T Consensus         3 m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            3 LKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999888888776444589999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cccceecccccc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------------AKLFARQQGAAT  261 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss~~~~~~~~~~  261 (328)
                      +.+|+||+||||||+.  +++.+.+.++|++++++|+.|+++++++++|+|.++              ||+.+..+.++.
T Consensus        83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~~~  162 (319)
T 3ioy_A           83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSP  162 (319)
T ss_dssp             HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCSSS
T ss_pred             HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCCCC
Confidence            9999999999999985  566788999999999999999999999999999752              666777788888


Q ss_pred             hhhhccCccccCCCCc-------cccccCccCCCCcccCC
Q psy4246         262 SIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQD  294 (328)
Q Consensus       262 ~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~  294 (328)
                      ..|++||++++ +++.       .+..+++.+.|+...++
T Consensus       163 ~~Y~aSKaal~-~~~~~la~e~~~~gi~v~~v~PG~v~T~  201 (319)
T 3ioy_A          163 GIYNTTKFAVR-GLSESLHYSLLKYEIGVSVLCPGLVKSY  201 (319)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHGGGTCEEEEECCCCBC--
T ss_pred             HHHHHHHHHHH-HHHHHHHHHhhhcCCEEEEEEcCeEccC
Confidence            99999999988 6662       23455666777766654

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.96  E-value=6.5e-31  Score=245.52  Aligned_cols=204  Identities=10%  Similarity=0.021  Sum_probs=157.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHH-CCCeEEEeeCChhHHH------------HHHHHHHhhCCCCeEEEEEcccCCHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLAL-HGCRVILACRSLDKAN------------DAISKILTEKPSAQCIAMELNLCRLKS  188 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~-~Ga~Vi~~~r~~~~~~------------~~~~~l~~~~~~~~~~~~~~Dls~~~~  188 (328)
                      .+|++|||||++|||+++|+.|++ +|++|++++|+.+.++            ...+++...  +.++..+.+|++|+++
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~--G~~a~~i~~Dvtd~~~  137 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA--GLYSKSINGDAFSDAA  137 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTSHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc--CCcEEEEEecCCCHHH
Confidence            489999999999999999999999 9999999998765432            122344433  6688999999999999


Q ss_pred             HHHHHHHHHHhc-CCccEEEEccccC---------------CCC---------------------CCCChhHHHHHHhhh
Q psy4246         189 VKKFAEEYQKKF-RSLNILVLNAGVF---------------GLG---------------------FSHTEDGFETTFQVN  231 (328)
Q Consensus       189 v~~~~~~~~~~~-g~id~lvnnAg~~---------------~~~---------------------~~~~~~~~~~~~~vN  231 (328)
                      ++++++.+.++| |+||+||||||+.               .++                     .++++++|++++++|
T Consensus       138 v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn  217 (422)
T 3s8m_A          138 RAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVM  217 (422)
T ss_dssp             HHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhh
Confidence            999999999999 9999999999872               233                     257999999999999


Q ss_pred             hHHHH-HHHHHHHHH-HHhc-------cccceecccccc--hhhhccCccccCCCC-------ccccccCccCCCCcccC
Q psy4246         232 HLAHF-YLTLQLENA-LIKG-------AKLFARQQGAAT--SIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQ  293 (328)
Q Consensus       232 ~~g~~-~l~~~~~~~-~~~~-------ss~~~~~~~~~~--~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~  293 (328)
                      ..+.| ++++++++. |.+.       ||+.+..+.+..  ..|++||+++. +++       +.+.++++.+.|+...+
T Consensus       218 ~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p~~~~~aY~ASKaAl~-~lTrsLA~Ela~~GIRVNaVaPG~i~T  296 (422)
T 3s8m_A          218 GGQDWELWIDALEGAGVLADGARSVAFSYIGTEITWPIYWHGALGKAKVDLD-RTAQRLNARLAKHGGGANVAVLKSVVT  296 (422)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHHHHTSHHHHHHHHHHH-HHHHHHHHHHHTTTCEEEEEEECCCCC
T ss_pred             chhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCCCccchHHHHHHHHHH-HHHHHHHHHhCccCEEEEEEEcCCCcC
Confidence            99997 888887764 4332       555556666666  89999999999 877       45667888888887777


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         294 DEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +....-............+|+|+|+|||||+.++|
T Consensus       297 ~~~~~ip~~~~~~~~~~~~m~r~G~pEdva~~v~~  331 (422)
T 3s8m_A          297 QASAAIPVMPLYISMVYKIMKEKGLHEGTIEQLDR  331 (422)
T ss_dssp             TTGGGSTHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             hhhhcCCCChHHHHHHHhhhcCCcChHHHHHHHHH
Confidence            64321111111122333479999999999998875

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.96  E-value=2.6e-30  Score=228.64  Aligned_cols=198  Identities=16%  Similarity=0.188  Sum_probs=152.6

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||++|||+++|++|+++|++|++++|+.+.++++.+++     +.++.++.+|++|+++++++++++.+.+|++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   75 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWCNI   75 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHTSCTTTCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            68999999999999999999999999999999988877766665     3478899999999999999999999999999


Q ss_pred             cEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         204 NILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       204 d~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      |+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|++++
T Consensus        76 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~  155 (248)
T 3asu_A           76 DILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVR  155 (248)
T ss_dssp             CEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHH
T ss_pred             CEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCCCCchHHHHHHHHH
Confidence            9999999985   355788999999999999999999999999999764        66666677778899999999998


Q ss_pred             CCCCcc-------ccccCccCCCCccc-CCHHHHHHHHHHHHHHHHHH-HhcccccccccccccC
Q psy4246         273 LPVSGS-------YFNNCCRCPPSKAA-QDEALATKLWKLSEEMIQSV-VSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~g~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~r~g~p~dia~~v~F  328 (328)
                       +++..       +..+++.+.|+... ++.... ......+...... ..+..+|+|+|.+++|
T Consensus       156 -~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~-~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~  218 (248)
T 3asu_A          156 -QFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNV-RFKGDDGKAEKTYQNTVALTPEDVSEAVWW  218 (248)
T ss_dssp             -HHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------CCBCHHHHHHHHHH
T ss_pred             -HHHHHHHHHhhhcCcEEEEEeccccccCcchhh-cccCchHHHHHHHhccCCCCHHHHHHHHHH
Confidence             76632       34566667777766 543211 0000000010101 2356799999998875

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.96  E-value=1.1e-30  Score=234.40  Aligned_cols=205  Identities=12%  Similarity=0.097  Sum_probs=160.8

Q ss_pred             CCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +|+||++|||||+  +|||+++|+.|+++|++|++++|+.+ .++..+++....+  .+.++.+|++|+++++++++++.
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~   79 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVK   79 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHH
Confidence            4789999999999  99999999999999999999999876 4445555555432  47889999999999999999999


Q ss_pred             HhcCCccEEEEccccCC------CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhh
Q psy4246         198 KKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYC  265 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~  265 (328)
                      +.+|++|+||||||+..      ++.+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...|+
T Consensus        80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  159 (275)
T 2pd4_A           80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMG  159 (275)
T ss_dssp             HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTCHHHH
T ss_pred             HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCCCCchhhH
Confidence            99999999999999853      45688999999999999999999999999998764      5555666677888999


Q ss_pred             ccCccccCCCCcc-------ccccCccCCCCcccCCHHHHH-HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT-KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++..       +..+++.+.|+...++..... ...+..+.+.. .+++|+++|+|+|.+++|
T Consensus       160 asK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~  230 (275)
T 2pd4_A          160 LAKAALE-SAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMY  230 (275)
T ss_dssp             HHHHHHH-HHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence            9999998 66632       345666667776665532110 00111122222 247899999999998875

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.96  E-value=1.1e-30  Score=232.75  Aligned_cols=206  Identities=14%  Similarity=0.136  Sum_probs=160.6

Q ss_pred             CCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ++|++|++|||||+  +|||+++|++|+++|++|++++|+.+ .++..+++....+  .+.++.+|++|+++++++++++
T Consensus         4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~   80 (261)
T 2wyu_A            4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALG--GALLFRADVTQDEELDALFAGV   80 (261)
T ss_dssp             ECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHH
Confidence            46889999999999  99999999999999999999999875 4444555554432  3788999999999999999999


Q ss_pred             HHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhh
Q psy4246         197 QKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIY  264 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y  264 (328)
                      .+++|++|+||||||+.      .++.+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...|
T Consensus        81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  160 (261)
T 2wyu_A           81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVM  160 (261)
T ss_dssp             HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTTCHHH
T ss_pred             HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCCCCchHH
Confidence            99999999999999985      345688999999999999999999999999998754      555556666778899


Q ss_pred             hccCccccCCCCcc-------ccccCccCCCCcccCCHHHHH-HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT-KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++..       +..+++.+.|+...++..... ...+..+.... .+++|+++|+|+|.+++|
T Consensus       161 ~asK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~  232 (261)
T 2wyu_A          161 AIAKAALE-ASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLF  232 (261)
T ss_dssp             HHHHHHHH-HHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99999998 66632       345666677776665432110 01111122222 247899999999998875

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.96  E-value=8.4e-30  Score=226.29  Aligned_cols=207  Identities=18%  Similarity=0.156  Sum_probs=163.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++++.+
T Consensus         9 ~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   86 (260)
T 3awd_A            9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME--GHDVSSVVMDVTNTESVQNAVRSVHE   86 (260)
T ss_dssp             GCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999988887777777654  45799999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccc--hhhh
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAAT--SIYC  265 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~--~~y~  265 (328)
                      +++++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|.+.        ||+.+..+.+..  ..|+
T Consensus        87 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~Y~  166 (260)
T 3awd_A           87 QEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYN  166 (260)
T ss_dssp             HHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSSCCHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCCCCCccccH
Confidence            999999999999975   345688999999999999999999999999999764        555555555555  8999


Q ss_pred             ccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++..       +..+++.+.|+...++....... ....+.... .+++|+++|+|+|.+++|
T Consensus       167 ~sK~a~~-~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  237 (260)
T 3awd_A          167 ASKAGVH-QYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVGQPDEVASVVQF  237 (260)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence            9999998 66633       34456666676665553220100 111122222 236899999999988764

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.96  E-value=4.3e-30  Score=230.33  Aligned_cols=203  Identities=16%  Similarity=0.188  Sum_probs=154.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|+ |++|||||++|||+++|++|+++|++|++++|+.+.++++..++...   .++.++.+|++|.++++++++++.+.
T Consensus        19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~   94 (272)
T 2nwq_A           19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEE   94 (272)
T ss_dssp             --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGG
T ss_pred             CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            466 99999999999999999999999999999999998888777766432   47889999999999999999999999


Q ss_pred             cCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      +|++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|++.         ||+.+..+.++...|+++
T Consensus        95 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~~~~~Y~as  174 (272)
T 2nwq_A           95 FATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGT  174 (272)
T ss_dssp             GSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCCCCCchHHHH
Confidence            99999999999984   456788999999999999999999999999999764         344555566778899999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHH-HhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSV-VSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++..... .....+...... ..+.++|+|||.+++|
T Consensus       175 Kaa~~-~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~~~~pedvA~~v~~  241 (272)
T 2nwq_A          175 KAFVE-QFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVR-FGGDQARYDKTYAGAHPIQPEDIAETIFW  241 (272)
T ss_dssp             HHHHH-HHHHHHHTTCTTSCCEEEEEEECSBC---------------------CCCCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhCccCeEEEEEEcCCCcCcchhcc-cccchHHHHHhhccCCCCCHHHHHHHHHH
Confidence            99998 66632       345666677776665532110 100001111111 2346899999998875

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.96  E-value=5.9e-30  Score=226.56  Aligned_cols=197  Identities=21%  Similarity=0.229  Sum_probs=146.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+.         ...   .+.++.+|++|+++++++++++.+
T Consensus         3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---------~~~---~~~~~~~D~~d~~~~~~~~~~~~~   70 (250)
T 2fwm_X            3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ---------EQY---PFATEVMDVADAAQVAQVCQRLLA   70 (250)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS---------SCC---SSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh---------hcC---CceEEEcCCCCHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999998652         111   277899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|
T Consensus        71 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  150 (250)
T 2fwm_X           71 ETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASK  150 (250)
T ss_dssp             HCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCCchHHHHH
Confidence            999999999999985  456788999999999999999999999999999764        5666666777889999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHH-HHHH-HHH--------HHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW-KLSE-EMI--------QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~--------~~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++.+.|+...++........ +..+ ...        ..+++|+++|+|||.+++|
T Consensus       151 ~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~  226 (250)
T 2fwm_X          151 AALK-SLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILF  226 (250)
T ss_dssp             HHHH-HHHHHHHHHHGGGTCEEEEEEECCC------------------------------------CHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhhhcccccCCCCCCcCHHHHHHHHHH
Confidence            9998 76633       345666666766655432110000 0011 111        2357899999999998875

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.96  E-value=3.2e-30  Score=232.56  Aligned_cols=205  Identities=13%  Similarity=0.128  Sum_probs=159.4

Q ss_pred             CCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +|+||++|||||+  +|||+++|+.|+++|++|++++|+.+ .++..+++....+  .+.++.+|++|.++++++++++.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~   94 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLE   94 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHH
Confidence            4899999999999  99999999999999999999999875 4445555554432  36789999999999999999999


Q ss_pred             HhcCCccEEEEccccCC------CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhh
Q psy4246         198 KKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIY  264 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y  264 (328)
                      +++|++|+||||||+..      ++.+.+.++|++++++|+.|+++++++++|+|.++       ||+.+..+.++...|
T Consensus        95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  174 (285)
T 2p91_A           95 ENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVPHYNVM  174 (285)
T ss_dssp             HHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCTTTTHH
T ss_pred             HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCCCccHH
Confidence            99999999999999853      45678999999999999999999999999999743       555566666778899


Q ss_pred             hccCccccCCCCcc-------ccccCccCCCCcccCCHHHH-HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALA-TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++..       +..+++.+.|+...++.... ....+..+.... .+++|+++|+|+|.+++|
T Consensus       175 ~~sK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~  246 (285)
T 2p91_A          175 GIAKAALE-STVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGKPITIEDVGDTAVF  246 (285)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999998 66633       34566666677665542110 000111112222 247899999999998875

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.96  E-value=3.7e-30  Score=231.62  Aligned_cols=202  Identities=15%  Similarity=0.137  Sum_probs=161.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++     +.++.++.+|++|.++++++++++ 
T Consensus        25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~-   98 (281)
T 3ppi_A           25 IKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSEDSVLAAIEAA-   98 (281)
T ss_dssp             CGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHH-
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHH-
Confidence            45789999999999999999999999999999999999998888877776     457899999999999999999999 


Q ss_pred             HhcCCccEEEEc-cccC--CCC-----CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh------c--------ccccee
Q psy4246         198 KKFRSLNILVLN-AGVF--GLG-----FSHTEDGFETTFQVNHLAHFYLTLQLENALIK------G--------AKLFAR  255 (328)
Q Consensus       198 ~~~g~id~lvnn-Ag~~--~~~-----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~------~--------ss~~~~  255 (328)
                      ++++++|+|||| ||+.  ...     .+.+.++|++++++|+.|+++++++++|.|.+      +        ||+.+.
T Consensus        99 ~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  178 (281)
T 3ppi_A           99 NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY  178 (281)
T ss_dssp             TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT
T ss_pred             HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc
Confidence            889999999999 5543  222     36788999999999999999999999999976      1        677777


Q ss_pred             cccccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHH-HHHHHHHH-HH-hccccccccccc
Q psy4246         256 QQGAATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQS-VV-STWLEETTERGE  325 (328)
Q Consensus       256 ~~~~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~r~g~p~dia~~  325 (328)
                      .+.++...|+++|++++ .++.       .+..+++.+.|+...++..  ..+.. ..+..... ++ +|+++|+|+|.+
T Consensus       179 ~~~~~~~~Y~asKaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~--~~~~~~~~~~~~~~~~~~~~~~~pedvA~~  255 (281)
T 3ppi_A          179 EGQIGQTAYAAAKAGVI-GLTIAAARDLSSAGIRVNTIAPGTMKTPIM--ESVGEEALAKFAANIPFPKRLGTPDEFADA  255 (281)
T ss_dssp             SCCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHH--HTTCHHHHHHHHHTCCSSSSCBCHHHHHHH
T ss_pred             CCCCCCcccHHHHHHHH-HHHHHHHHHHhhcCeEEEEEecCcCCchhh--hcccHHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence            78888999999999998 6663       2345566666766655432  21111 11222222 24 899999999998


Q ss_pred             ccC
Q psy4246         326 VVF  328 (328)
Q Consensus       326 v~F  328 (328)
                      ++|
T Consensus       256 v~~  258 (281)
T 3ppi_A          256 AAF  258 (281)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.96  E-value=1.5e-29  Score=232.19  Aligned_cols=171  Identities=18%  Similarity=0.189  Sum_probs=138.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-----hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-----LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+     .+.++++.+.+...  +.++.++.+|++|.++++++++
T Consensus         2 ~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~--~~~~~~~~~Dvtd~~~v~~~~~   79 (324)
T 3u9l_A            2 VMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN--DVDLRTLELDVQSQVSVDRAID   79 (324)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHH
Confidence            5789999999999999999999999999999987765     44555555555444  5689999999999999999999


Q ss_pred             HHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecc-cccchh
Q psy4246         195 EYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQ-GAATSI  263 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~-~~~~~~  263 (328)
                      ++.+++|++|+||||||+.  +++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+ .++...
T Consensus        80 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~~~~~  159 (324)
T 3u9l_A           80 QIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAP  159 (324)
T ss_dssp             HHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCCSSCHH
T ss_pred             HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCCCcchh
Confidence            9999999999999999985  567788999999999999999999999999999865        55555433 356788


Q ss_pred             hhccCccccCCCCcc-------ccccCccCCCCcccC
Q psy4246         264 YCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQ  293 (328)
Q Consensus       264 y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~  293 (328)
                      |++||++++ +++..       +..+++.+.|+...+
T Consensus       160 Y~asKaa~~-~~~~~la~el~~~gI~v~~v~PG~v~t  195 (324)
T 3u9l_A          160 YFAAKAAMD-AIAVQYARELSRWGIETSIIVPGAFTS  195 (324)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHTTTEEEEEEEECCC--
T ss_pred             HHHHHHHHH-HHHHHHHHHhhhhCcEEEEEECCcccc
Confidence            999999999 76633       345666666666543

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.96  E-value=1.7e-29  Score=224.59  Aligned_cols=207  Identities=14%  Similarity=0.153  Sum_probs=162.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++| +.+.+++..+++...  +.++.++.+|++|+++++++++++.
T Consensus         3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   80 (261)
T 1gee_A            3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAI   80 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999 877777777777554  4588999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                      +.++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.         ||+.+..+.++...|++
T Consensus        81 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~  160 (261)
T 1gee_A           81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAA  160 (261)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCCCccHHHH
Confidence            9999999999999985  345678899999999999999999999999999763         55555666678889999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++.+.|+...++...... ..+..+.+.. .+++|+++|+|+|.+++|
T Consensus       161 sK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  230 (261)
T 1gee_A          161 SKGGMK-LMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAW  230 (261)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999998 65532       2345566667666554321110 0111112211 136889999999998764

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.96  E-value=1.6e-30  Score=232.11  Aligned_cols=205  Identities=13%  Similarity=0.111  Sum_probs=158.7

Q ss_pred             CCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +|++|++|||||+  +|||+++|++|+++|++|++++|+. ..++..+++....+  ...++.+|++|+++++++++++.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~   82 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELG   82 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcC--CcEEEEccCCCHHHHHHHHHHHH
Confidence            4889999999999  9999999999999999999999987 44445555554432  34788999999999999999999


Q ss_pred             HhcCCccEEEEccccCC------CCCC-CChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhh
Q psy4246         198 KKFRSLNILVLNAGVFG------LGFS-HTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIY  264 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~------~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y  264 (328)
                      +++|++|+||||||+..      ++.+ .+.++|++++++|+.|+++++++++|+|.+.      ||+.+..+.++...|
T Consensus        83 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  162 (265)
T 1qsg_A           83 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVM  162 (265)
T ss_dssp             TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHH
T ss_pred             HHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCCCchHH
Confidence            99999999999999853      3345 8899999999999999999999999998754      555566666788899


Q ss_pred             hccCccccCCCCcc-------ccccCccCCCCcccCCHHHHH-HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALAT-KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++..       +..+++.+.|+...++..... ...+..+.... .+++|+++|+|+|.+++|
T Consensus       163 ~~sK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~  234 (265)
T 1qsg_A          163 GLAKASLE-ANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAF  234 (265)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99999998 76633       345666666776655432110 01111122222 247899999999998875

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.96  E-value=1.5e-30  Score=230.59  Aligned_cols=206  Identities=20%  Similarity=0.196  Sum_probs=161.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .|++|++|||||++|||+++|++|+++|++|+++ .|+.+.+++...++...  +.++.++.+|++|.++++.+++++.+
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGVEALYSSLDN   81 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhc--CCceEEEecCcCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999885 67777777777777665  56899999999999999999999988


Q ss_pred             hcC------CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhh
Q psy4246         199 KFR------SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIY  264 (328)
Q Consensus       199 ~~g------~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y  264 (328)
                      .++      ++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.      ||..+..+.++...|
T Consensus        82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y  161 (255)
T 3icc_A           82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAY  161 (255)
T ss_dssp             HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCTTBHHH
T ss_pred             HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCCCcchh
Confidence            764      499999999985  445678999999999999999999999999999654      666677778889999


Q ss_pred             hccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHH--HHHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMI--QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++.       .+..+++.+.|+...++...............  ..+++|+++|+|+|.+++|
T Consensus       162 ~asKaa~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  233 (255)
T 3icc_A          162 SMTKGAIN-TMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTAAF  233 (255)
T ss_dssp             HHHHHHHH-HHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred             HHhHHHHH-HHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccCCcCCCCCHHHHHHHHHH
Confidence            99999998 6663       23455666666666554211100000001111  1237999999999998865

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.96  E-value=1.4e-30  Score=231.08  Aligned_cols=194  Identities=20%  Similarity=0.287  Sum_probs=149.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|.+|++|||||++|||+++|++|+++|++|++++|+.+.++             .+.++.+|++|+++++++++++.+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~Dl~d~~~v~~~~~~~~~   83 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE-------------GFLAVKCDITDTEQVEQAYKEIEE   83 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc-------------cceEEEecCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999865421             267899999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|.|+++        ||+.+..+.++...|+++|
T Consensus        84 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  163 (253)
T 2nm0_A           84 THGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASK  163 (253)
T ss_dssp             HTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCcHHHHHHH
Confidence            999999999999985  445678999999999999999999999999999764        5555666667788999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH-HHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++.+.|+...++..  ..+.. ..+.... .+++|+++|+|+|.+++|
T Consensus       164 ~a~~-~~~~~la~e~~~~gi~vn~v~PG~v~T~~~--~~~~~~~~~~~~~~~p~~~~~~p~dvA~~i~~  229 (253)
T 2nm0_A          164 AGLV-GFARSLARELGSRNITFNVVAPGFVDTDMT--KVLTDEQRANIVSQVPLGRYARPEEIAATVRF  229 (253)
T ss_dssp             HHHH-HHHHHHHHHHCSSSEEEEEEEECSBCC-----------CHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhhcCeEEEEEEeCcCcCcch--hhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9998 66632       345666677776655532  11111 1111111 136899999999998865

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.96  E-value=6.9e-30  Score=225.70  Aligned_cols=198  Identities=23%  Similarity=0.303  Sum_probs=146.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++     ..++.++.+|+++.+++++++++   
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~---   81 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLISK---   81 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHT---
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHHh---
Confidence            4689999999999999999999999999999999999998888777666     34788999999999998887764   


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                       ++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.++        ||..+..+.++...|+++|
T Consensus        82 -~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  160 (249)
T 3f9i_A           82 -TSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASK  160 (249)
T ss_dssp             -CSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCSCSHHHHHHH
T ss_pred             -cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCCCCchhHHHH
Confidence             47899999999985  345678889999999999999999999999999764        6667777788899999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHH-HHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW-KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++.+.|+...++..  ..+. ...+.... .+++|++.|+|+|.+++|
T Consensus       161 ~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  226 (249)
T 3f9i_A          161 AGLI-GMTKSLSYEVATRGITVNAVAPGFIKSDMT--DKLNEKQREAIVQKIPLGTYGIPEDVAYAVAF  226 (249)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECCBC--------CCHHHHHHHHHHCTTCSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHcCcEEEEEecCccccCcc--cccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9998 66632       334556666666554432  1111 11122222 238899999999998765

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.96  E-value=1.7e-30  Score=235.07  Aligned_cols=200  Identities=26%  Similarity=0.338  Sum_probs=151.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|+||++|||||++|||+++|++|+++|++|++++|+.+++++...++     +.++.++.+|++|.++++++++++ 
T Consensus        11 ~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~-   84 (291)
T 3rd5_A           11 LPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGV-   84 (291)
T ss_dssp             CCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTC-
T ss_pred             ccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhc-
Confidence            45789999999999999999999999999999999999988877665544     568999999999999999988876 


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecc-------------ccc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQ-------------GAA  260 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~-------------~~~  260 (328)
                         +++|+||||||+..+..+.+.++|++++++|+.|+++++++++|+|.++    ||+.+..+             .++
T Consensus        85 ---~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~  161 (291)
T 3rd5_A           85 ---SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSP  161 (291)
T ss_dssp             ---CCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCH
T ss_pred             ---CCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCC
Confidence               7999999999998777788999999999999999999999999999765    55544432             346


Q ss_pred             chhhhccCccccCCCCccc-------c--ccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccc-cccccccccC
Q psy4246         261 TSIYCATSLDLSLPVSGSY-------F--NNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLE-ETTERGEVVF  328 (328)
Q Consensus       261 ~~~y~ask~al~~~~~g~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~-p~dia~~v~F  328 (328)
                      ...|++||++++ .++..+       .  .+++.+.|+...++..... .....+.....+++|++. |+|+|.+++|
T Consensus       162 ~~~Y~~sK~a~~-~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  237 (291)
T 3rd5_A          162 WLAYSQSKLANL-LFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGAS-GRKLGDALMSAATRVVATDADFGARQTLY  237 (291)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHTTCCCEEEEECCSGGGSCC---------------------CHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHH-HHHHHHHHHHhhCCCCEEEEEeeCCCCcccccccc-chHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            678999999998 666322       2  5566677887766543221 111222233345778887 9999988875

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.96  E-value=1.9e-29  Score=223.21  Aligned_cols=207  Identities=21%  Similarity=0.265  Sum_probs=162.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.+
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   84 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAIS   84 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4588999999999999999999999999999999999998887777777654  45788999999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVFGL-GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      .++++|+||||||+... ..+.+.++|++++++|+.|+++++++++|+|.+.        ||..+..+.++...|+++|+
T Consensus        85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~  164 (255)
T 1fmc_A           85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKA  164 (255)
T ss_dssp             HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHH
T ss_pred             hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCCcccHHHHH
Confidence            99999999999998532 2377899999999999999999999999999764        55555666677889999999


Q ss_pred             cccCCCCccc-------cccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..+       ..+++...|+...++...........+.... .+++|+++|+|+|.+++|
T Consensus       165 a~~-~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  230 (255)
T 1fmc_A          165 AAS-HLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALF  230 (255)
T ss_dssp             HHH-HHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhhhcCcEEEEEecccCcchhhhhccChHHHHHHHhcCCcccCCCHHHHHHHHHH
Confidence            998 665332       3445555666555432211000111112211 236899999999988764

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.96  E-value=7.4e-30  Score=225.54  Aligned_cols=194  Identities=19%  Similarity=0.235  Sum_probs=148.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|++|++|||||++|||+++|++|+++|++|++++|+.+.+++             +..+.+|++|+++++++++++.+
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-------------~~~~~~D~~~~~~~~~~~~~~~~   77 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG-------------LFGVEVDVTDSDAVDRAFTAVEE   77 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT-------------SEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH-------------hcCeeccCCCHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999998654321             12488999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.++...|+++|
T Consensus        78 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  157 (247)
T 1uzm_A           78 HQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASK  157 (247)
T ss_dssp             HHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCCCChhHHHHH
Confidence            999999999999985  445788999999999999999999999999999764        5555666677889999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH-HHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++.+.|+...++..  ..+.. ..+.... .+++|+++|+|+|.+++|
T Consensus       158 ~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~--~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~  223 (247)
T 1uzm_A          158 AGVI-GMARSIARELSKANVTANVVAPGYIDTDMT--RALDERIQQGALQFIPAKRVGTPAEVAGVVSF  223 (247)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHH--HHSCHHHHHHHGGGCTTCSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhhcCcEEEEEEeCCCcccch--hhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9998 66633       345666677776655432  11111 1111111 136899999999998865

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.96  E-value=4.7e-29  Score=220.70  Aligned_cols=204  Identities=20%  Similarity=0.238  Sum_probs=158.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeE-EEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQC-IAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dls~~~~v~~~~~~~  196 (328)
                      .++|++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++ .++.+|++|.++++++++++
T Consensus         6 ~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~   80 (254)
T 2wsb_A            6 VFRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL-----GAAVAARIVADVTDAEAMTAAAAEA   80 (254)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cccceeEEEEecCCHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999988877766665     3356 88999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccc--hhh
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAAT--SIY  264 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~--~~y  264 (328)
                      .+ ++++|+||||||+.  .+..+.+.++|++++++|+.|++++++.++|+|++.        ||..+..+.+..  ..|
T Consensus        81 ~~-~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y  159 (254)
T 2wsb_A           81 EA-VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSY  159 (254)
T ss_dssp             HH-HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSSCBHHH
T ss_pred             Hh-hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCCCCcchHH
Confidence            88 89999999999985  445778999999999999999999999999999764        555555555555  899


Q ss_pred             hccCccccCCCCccc-------cccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .+...+       ..+++.+.|+...++....... .+..+.... .+++|+++|+|+|.+++|
T Consensus       160 ~~sK~a~~-~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  231 (254)
T 2wsb_A          160 MASKGAVH-QLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPSEIAAAALF  231 (254)
T ss_dssp             HHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99999998 665332       3455666666665543221100 011122222 136889999999998764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.96  E-value=1.6e-29  Score=228.11  Aligned_cols=205  Identities=19%  Similarity=0.239  Sum_probs=162.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++...  +.++.++.+|++|.++++++++++.+
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~  117 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKILT  117 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999988888777777654  56789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|.|.+.        ||+.+..+.++...|+++|
T Consensus       118 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK  197 (285)
T 2c07_A          118 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSK  197 (285)
T ss_dssp             HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHH
T ss_pred             hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCCchHHHHH
Confidence            999999999999985  456788999999999999999999999999999764        5555566667889999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH-HHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++.+.|+...++..  ..+.. ..+.... .+++|+++|+|+|.+++|
T Consensus       198 ~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~  263 (285)
T 2c07_A          198 AGVI-GFTKSLAKELASRNITVNAIAPGFISSDMT--DKISEQIKKNIISNIPAGRMGTPEEVANLACF  263 (285)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECSBCC-------CCHHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHhCcEEEEEEeCcEecCch--hhcCHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Confidence            9998 65533       234556666666555432  11111 1111111 136889999999998764

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.96  E-value=1e-29  Score=224.40  Aligned_cols=197  Identities=15%  Similarity=0.212  Sum_probs=151.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.++++++. ++      .++.++.+|++|+++++    ++.+.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~------~~~~~~~~D~~~~~~~~----~~~~~   71 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KY------PGIQTRVLDVTKKKQID----QFANE   71 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GS------TTEEEEECCTTCHHHHH----HHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hc------cCceEEEeeCCCHHHHH----HHHHH
Confidence            578999999999999999999999999999999999977654432 21      26888999999999987    44556


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccc-cchhhhccC
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGA-ATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~-~~~~y~ask  268 (328)
                      ++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.+ +...|+++|
T Consensus        72 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~~sK  151 (246)
T 2ag5_A           72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTK  151 (246)
T ss_dssp             CSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHH
T ss_pred             hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCCCCCccHHHHH
Confidence            79999999999985  345678999999999999999999999999999764        5555555555 788999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-----HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-----LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++.+.|+...++......     ..+..+..... +++|+++|+|||.+++|
T Consensus       152 ~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~  223 (246)
T 2ag5_A          152 AAVI-GLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVY  223 (246)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            9998 76643       3456677777776665322100     01111122221 37899999999998875

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.96  E-value=2.3e-29  Score=226.05  Aligned_cols=205  Identities=19%  Similarity=0.202  Sum_probs=158.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+..++..+++...  +.++.++.+|++|.++++++++++.+
T Consensus        30 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~  107 (279)
T 3ctm_A           30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSVEETISQQEK  107 (279)
T ss_dssp             GCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999987776666655544  45789999999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCC-CCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecc--cccchhh
Q psy4246         199 KFRSLNILVLNAGVF---GLGF-SHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQ--GAATSIY  264 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~--~~~~~~y  264 (328)
                      .++++|+||||||+.   .++. +.+.++|++++++|+.|++++++.++|.|++.        ||..+..+  .++...|
T Consensus       108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y  187 (279)
T 3ctm_A          108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPY  187 (279)
T ss_dssp             HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC---CCHHHH
T ss_pred             HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCCCCCCcccH
Confidence            999999999999985   3344 77889999999999999999999999999764        55555555  5678899


Q ss_pred             hccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|++++ .++..       +. +++.+.|+...++..... ..+..+.... .+++|+++|+|+|.+++|
T Consensus       188 ~~sK~a~~-~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~p~~~~~~~~dvA~~~~~  256 (279)
T 3ctm_A          188 NTAKAACT-HLAKSLAIEWAPFA-RVNTISPGYIDTDITDFA-SKDMKAKWWQLTPLGREGLTQELVGGYLY  256 (279)
T ss_dssp             HHHHHHHH-HHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSC-CHHHHHHHHHHSTTCSCBCGGGTHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHhcccC-CEEEEeccCCcccccccc-ChHHHHHHHHhCCccCCcCHHHHHHHHHH
Confidence            99999998 65532       22 555566665555421000 0001111111 247899999999998765

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.96  E-value=6.7e-29  Score=223.17  Aligned_cols=207  Identities=18%  Similarity=0.218  Sum_probs=160.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++.......++.++.+|++|+++++++++++.+.
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999999999888887777766533457889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------ccccee--cccccchhhh
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----------AKLFAR--QQGAATSIYC  265 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------ss~~~~--~~~~~~~~y~  265 (328)
                      ++++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|.|++.          ||+.+.  .+.++...|+
T Consensus       109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~  188 (279)
T 1xg5_A          109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYS  188 (279)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHHH
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccCCCCCCchhH
Confidence            99999999999985  445678999999999999999999999999999864          333333  3556778899


Q ss_pred             ccCccccCCCCc---------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG---------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++.         .+..+++.+.|+...++..... .....+..... ...|+++|+|+|.+++|
T Consensus       189 ~sK~a~~-~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~dvA~~i~~  259 (279)
T 1xg5_A          189 ATKYAVT-ALTEGLRQELREAQTHIRATCISPGVVETQFAFKL-HDKDPEKAAATYEQMKCLKPEDVAEAVIY  259 (279)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHH-TTTCHHHHHHHHC---CBCHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhh-cccChhHHhhhcccccCCCHHHHHHHHHH
Confidence            9999988 6553         2334556666777766653211 10011111111 25689999999998865

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.96  E-value=1.3e-29  Score=223.48  Aligned_cols=204  Identities=18%  Similarity=0.238  Sum_probs=144.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +|++|++|||||++|||+++|++|+++|++|+++ .|+.+.+++..+++...  +.++.++.+|++|+++++++++++.+
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998 67777777766666554  56789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||..+..+.++...|+++|
T Consensus        80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK  159 (247)
T 2hq1_A           80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASK  159 (247)
T ss_dssp             HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC---------CHHHHHHH
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCCcHhHHHH
Confidence            999999999999985  345677889999999999999999999999999764        5555666667889999999


Q ss_pred             ccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH-HHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..       +..+++...|+...++..  ..+.. ..+.... .+++|+++|+|+|.+++|
T Consensus       160 ~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  225 (247)
T 2hq1_A          160 AGLI-GFTKSIAKEFAAKGIYCNAVAPGIIKTDMT--DVLPDKVKEMYLNNIPLKRFGTPEEVANVVGF  225 (247)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHH--HTSCHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHcCcEEEEEEEEEEeccch--hhcchHHHHHHHhhCCCCCCCCHHHHHHHHHH
Confidence            9998 66533       234555566665554321  11111 1111111 136889999999988754

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.96  E-value=2e-29  Score=222.20  Aligned_cols=207  Identities=22%  Similarity=0.235  Sum_probs=160.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|++|++|||||++|||++++++|+++|++|++++|+.+.+++...++.... +.++.++.+|++|+++++++++++.
T Consensus         2 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~   80 (248)
T 2pnf_A            2 EIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIY   80 (248)
T ss_dssp             CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999888777776665421 4578999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +.++++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|.|.+.        ||..+..+.++...|+++
T Consensus        81 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~s  160 (248)
T 2pnf_A           81 NLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTT  160 (248)
T ss_dssp             HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHH
T ss_pred             HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCCCCchHHHH
Confidence            9999999999999985  345678899999999999999999999999999764        555555666778899999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH-HHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++...|+...++...  .+.. ..+.... .+++|+++|+|+|.+++|
T Consensus       161 K~a~~-~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  227 (248)
T 2pnf_A          161 KAGLI-GFTKSLAKELAPRNVLVNAVAPGFIETDMTA--VLSEEIKQKYKEQIPLGRFGSPEEVANVVLF  227 (248)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCGGGG--GSCHHHHHHHHHTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhcccCeEEEEEEeceecCchhh--hccHHHHHHHHhcCCCCCccCHHHHHHHHHH
Confidence            99998 65532       2344555555554443211  0000 1111111 136889999999988764

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.96  E-value=3.2e-29  Score=221.31  Aligned_cols=204  Identities=17%  Similarity=0.152  Sum_probs=160.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||++|||+++|++|+++|++|++++|+.+.+++...++.... +.++.++.+|++|+++++++++++.+++++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            6899999999999999999999999999999999888877766662222 457899999999999999999999999999


Q ss_pred             ccEEEEccccCC--C---CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         203 LNILVLNAGVFG--L---GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       203 id~lvnnAg~~~--~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|+||||||+..  +   +.+.+.++|++++++|+.|++++++.++|+|.+.        ||..+..+.++...|+++|+
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~  160 (250)
T 2cfc_A           81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKG  160 (250)
T ss_dssp             CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCchhHHHHHH
Confidence            999999999853  2   5577899999999999999999999999999764        55566666778899999999


Q ss_pred             cccCCCCccc-------cccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..+       ..+++...|+...++....... ....+.+.. .+++|+++|+|+|.+++|
T Consensus       161 a~~-~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  227 (250)
T 2cfc_A          161 AVL-QLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMF  227 (250)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            998 666332       3455666676665553221000 011111211 237899999999998764

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.96  E-value=2.5e-29  Score=223.88  Aligned_cols=202  Identities=17%  Similarity=0.197  Sum_probs=158.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.++.++.+|++|+++++++++++.+
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAKG   82 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999988877766665     45789999999999999999999999


Q ss_pred             hcCCccEEEEccccCCC--CC------CCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cccceec
Q psy4246         199 KFRSLNILVLNAGVFGL--GF------SHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------------AKLFARQ  256 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~--~~------~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss~~~~~  256 (328)
                      +++++|+||||||+...  ..      +.+.++|++++++|+.|+++++++++|+|.++              ||+.+..
T Consensus        83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  162 (265)
T 2o23_A           83 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE  162 (265)
T ss_dssp             HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred             HCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC
Confidence            99999999999998532  22      37889999999999999999999999999753              4455556


Q ss_pred             ccccchhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHH-HHHHHHHH-HH-hcccccccccccc
Q psy4246         257 QGAATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQS-VV-STWLEETTERGEV  326 (328)
Q Consensus       257 ~~~~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~r~g~p~dia~~v  326 (328)
                      +.++...|+++|++++ .++..       +..+++.+.|+...++....  ... ..+..... ++ +|+++|+|+|.++
T Consensus       163 ~~~~~~~Y~~sK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dva~~~  239 (265)
T 2o23_A          163 GQVGQAAYSASKGGIV-GMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS--LPEKVCNFLASQVPFPSRLGDPAEYAHLV  239 (265)
T ss_dssp             CCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTCSSSCSCBCHHHHHHHH
T ss_pred             CCCCCchhHHHHHHHH-HHHHHHHHHHhhcCcEEEEEEeccccCccccc--cCHHHHHHHHHcCCCcCCCCCHHHHHHHH
Confidence            6677889999999998 66532       34556666677666653211  111 11111111 24 8999999999987


Q ss_pred             cC
Q psy4246         327 VF  328 (328)
Q Consensus       327 ~F  328 (328)
                      +|
T Consensus       240 ~~  241 (265)
T 2o23_A          240 QA  241 (265)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.96  E-value=2.9e-29  Score=220.54  Aligned_cols=194  Identities=16%  Similarity=0.216  Sum_probs=152.6

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||++|||+++|++|+++|++|++++|+.++   ..+++     +  +.++.+|++| ++++++++++.+.+++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~-----~--~~~~~~D~~~-~~~~~~~~~~~~~~g~   70 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSL-----G--AVPLPTDLEK-DDPKGLVKRALEALGG   70 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHH-----T--CEEEECCTTT-SCHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhh-----C--cEEEecCCch-HHHHHHHHHHHHHcCC
Confidence            6899999999999999999999999999999998765   22233     2  6788999999 9999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceeccc--ccchhhhccCcc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQG--AATSIYCATSLD  270 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~--~~~~~y~ask~a  270 (328)
                      +|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++.        ||+.+..+.  ++...|+++|++
T Consensus        71 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sK~a  150 (239)
T 2ekp_A           71 LHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTA  150 (239)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTSCCHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCCCCCCccHHHHHHH
Confidence            99999999985  456788999999999999999999999999999764        555555555  778899999999


Q ss_pred             ccCCCCcc-------ccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         271 LSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++ .++..       +..+++.+.|+...++...... ..+..+.... .+++|+++|+|+|.+++|
T Consensus       151 ~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~  216 (239)
T 2ekp_A          151 LL-GLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPEEIARVAAV  216 (239)
T ss_dssp             HH-HHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            98 66632       3456677777776665321100 0111111211 237899999999998865

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.96  E-value=1.9e-29  Score=249.09  Aligned_cols=194  Identities=16%  Similarity=0.178  Sum_probs=154.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh---------hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL---------DKANDAISKILTEKPSAQCIAMELNLCRLKSV  189 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~---------~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v  189 (328)
                      ++|+||++|||||++|||+++|+.|+++|++|++++|+.         +.++++.+++...  +.++   .+|++|.+++
T Consensus         4 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~--g~~~---~~d~~d~~~~   78 (604)
T 2et6_A            4 VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN--GGVA---VADYNNVLDG   78 (604)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT--TCEE---EEECCCTTCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc--CCeE---EEEcCCHHHH
Confidence            468999999999999999999999999999999998765         5667777777654  3343   3688888889


Q ss_pred             HHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccc
Q psy4246         190 KKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGA  259 (328)
Q Consensus       190 ~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~  259 (328)
                      +++++++.++||+||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+|+++        +|+.+..+.+
T Consensus        79 ~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~  158 (604)
T 2et6_A           79 DKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNF  158 (604)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCC
Confidence            999999999999999999999985  467889999999999999999999999999999865        5666777778


Q ss_pred             cchhhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         260 ATSIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       260 ~~~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +...|+++|+|+. +++       +.+.++++.+.|+ ..+  .+.+...  .+     .+.+..+|+|||.+++|
T Consensus       159 ~~~~Y~asKaal~-~lt~~la~El~~~gIrVn~v~Pg-~~T--~m~~~~~--~~-----~~~~~~~pe~vA~~v~~  223 (604)
T 2et6_A          159 GQANYASAKSALL-GFAETLAKEGAKYNIKANAIAPL-ARS--RMTESIM--PP-----PMLEKLGPEKVAPLVLY  223 (604)
T ss_dssp             TBHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEEC-CCC--HHHHTTS--CH-----HHHTTCSHHHHHHHHHH
T ss_pred             CchHHHHHHHHHH-HHHHHHHHHhCccCeEEEEEccC-CcC--ccccccC--Ch-----hhhccCCHHHHHHHHHH
Confidence            8999999999999 877       4466777877775 222  2222110  00     12345799999988875

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.95  E-value=3.6e-29  Score=220.14  Aligned_cols=201  Identities=21%  Similarity=0.260  Sum_probs=158.3

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ||++|||||++|||+++|++|+++|++|+++ +|+.+.+++..+++...  +.++.++.+|++|+++++++++++.+.++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            6899999999999999999999999999984 89888877777776654  45889999999999999999999999999


Q ss_pred             CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccc
Q psy4246         202 SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       202 ~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      ++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.++        ||..+..+.++...|+++|+++
T Consensus        79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~  158 (244)
T 1edo_A           79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGV  158 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCCCCccchhhHHHH
Confidence            999999999985  345678899999999999999999999999999764        5555566667889999999998


Q ss_pred             cCCCCcc-------ccccCccCCCCcccCCHHHHHHHH-HHHHHHHH-HHHhcccccccccccccC
Q psy4246         272 SLPVSGS-------YFNNCCRCPPSKAAQDEALATKLW-KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      + .++..       +..+++.+.|+...++..  .... ...+.... .+++|+++|+|+|.+++|
T Consensus       159 ~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  221 (244)
T 1edo_A          159 I-GFSKTAAREGASRNINVNVVCPGFIASDMT--AKLGEDMEKKILGTIPLGRTGQPENVAGLVEF  221 (244)
T ss_dssp             H-HHHHHHHHHHHTTTEEEEEEEECSBCSHHH--HTTCHHHHHHHHTSCTTCSCBCHHHHHHHHHH
T ss_pred             H-HHHHHHHHHhhhcCCEEEEEeeCccccchh--hhcChHHHHHHhhcCCCCCCCCHHHHHHHHHH
Confidence            8 66533       234455566666554422  1111 11111111 136889999999988764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.95  E-value=7.9e-29  Score=225.33  Aligned_cols=206  Identities=22%  Similarity=0.235  Sum_probs=158.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-HHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-KSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~~~~~~~  198 (328)
                      .+++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... +.++.++.+|++|. ++++.+++.+.+
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999988888887653 45899999999998 999999999999


Q ss_pred             hcCCccEEEEccccCC--------------------------------CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFG--------------------------------LGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~--------------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      .+++||+||||||+..                                ++.+.+.++|+++|++|+.|+++++++++|+|
T Consensus        88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l  167 (311)
T 3o26_A           88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL  167 (311)
T ss_dssp             HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence            9999999999999863                                23466889999999999999999999999999


Q ss_pred             Hhc--------cccceeccc-------------------------------------------ccchhhhccCccccCCC
Q psy4246         247 IKG--------AKLFARQQG-------------------------------------------AATSIYCATSLDLSLPV  275 (328)
Q Consensus       247 ~~~--------ss~~~~~~~-------------------------------------------~~~~~y~ask~al~~~~  275 (328)
                      +++        ||+.+..+.                                           ++...|++||++++ .+
T Consensus       168 ~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~-~~  246 (311)
T 3o26_A          168 QLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLN-AY  246 (311)
T ss_dssp             TTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHH-HH
T ss_pred             ccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHH-HH
Confidence            865        444433322                                           34578999999998 66


Q ss_pred             Ccccc-----ccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         276 SGSYF-----NNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       276 ~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +..+.     .+++.+.|+...++..... .....++..+.++.+...|++++..+.|
T Consensus       247 ~~~la~e~~~i~v~~v~PG~v~T~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~g~~~  303 (311)
T 3o26_A          247 TRVLANKIPKFQVNCVCPGLVKTEMNYGI-GNYTAEEGAEHVVRIALFPDDGPSGFFY  303 (311)
T ss_dssp             HHHHHHHCTTSEEEEECCCSBCSGGGTTC-CSBCHHHHHHHHHHHHTCCSSCCCSCEE
T ss_pred             HHHHHhhcCCceEEEecCCceecCCcCCC-CCCCHHHHHHHHHHHHhCCCCCCCceEe
Confidence            63321     3456667776665532110 0011223334456677788888876654

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.4e-29  Score=225.39  Aligned_cols=209  Identities=18%  Similarity=0.231  Sum_probs=157.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC-----CCCeEEEEEcccCCHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK-----PSAQCIAMELNLCRLKSVKKF  192 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~~Dls~~~~v~~~  192 (328)
                      ..+|++|++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++....     +..++.++.+|++|.++++++
T Consensus         2 ~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   81 (264)
T 2pd6_A            2 QNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCL   81 (264)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHH
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHH
Confidence            346889999999999999999999999999999999999888776665553321     115788999999999999999


Q ss_pred             HHHHHHhcCCc-cEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceeccccc
Q psy4246         193 AEEYQKKFRSL-NILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAA  260 (328)
Q Consensus       193 ~~~~~~~~g~i-d~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~  260 (328)
                      ++.+.+.+|++ |+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.++         ||+.+..+.++
T Consensus        82 ~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~  161 (264)
T 2pd6_A           82 LEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVG  161 (264)
T ss_dssp             HHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCTT
T ss_pred             HHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCCC
Confidence            99999999999 9999999985  345678999999999999999999999999999753         45455566678


Q ss_pred             chhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         261 TSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       261 ~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ...|+++|++++ .++..       +..+++.+.|+...++..... .....+.... .+++|+++|+|+|.+++|
T Consensus       162 ~~~Y~~sK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~dva~~~~~  235 (264)
T 2pd6_A          162 QTNYAASKAGVI-GLTQTAARELGRHGIRCNSVLPGFIATPMTQKV-PQKVVDKITEMIPMGHLGDPEDVADVVAF  235 (264)
T ss_dssp             BHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSCC-----------CTGGGCTTCSCBCHHHHHHHHHH
T ss_pred             ChhhHHHHHHHH-HHHHHHHHHhhhcCeEEEEEeeecccccchhhc-CHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence            899999999988 66532       334556666665555432110 0001111111 136789999999988764

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.95  E-value=3.1e-29  Score=221.52  Aligned_cols=203  Identities=19%  Similarity=0.139  Sum_probs=159.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++..   ..++.++.+|++|+++++++++++.+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc---cCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999998877776666532   247889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|.|++.         ||..+..+.++...|+++|
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK  159 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASK  159 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCCCCccchHHH
Confidence            99999999999985  456788999999999999999999999999999764         4445556667788999999


Q ss_pred             ccccCCCCcc---------ccccCccCCCCcccCCHHHHHHHHH-HHHH-HH-HHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGS---------YFNNCCRCPPSKAAQDEALATKLWK-LSEE-MI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..         +..+++.+.|+...++..  ..... .... .. ..+++|+++|+|+|.+++|
T Consensus       160 ~a~~-~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  228 (251)
T 1zk4_A          160 GAVR-IMSKSAALDCALKDYDVRVNTVHPGYIKTPLV--DDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVY  228 (251)
T ss_dssp             HHHH-HHHHHHHHHHHHTTCSEEEEEEEECCBCCHHH--HTSTTHHHHHTSTTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCCCeEEEEEeeCcCcchhh--hhcCchhhhHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            9998 66532         234455555665554432  11110 0001 11 1136889999999998764

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.95  E-value=6.2e-29  Score=221.99  Aligned_cols=199  Identities=20%  Similarity=0.222  Sum_probs=156.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++.....+.++.++.+|++|+++++++++.+.++
T Consensus         4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999998887777777655433457899999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----------cccceecccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----------ss~~~~~~~~~~~~y~ask  268 (328)
                      +|++|+||||||+.      +.++|++++++|+.|++++++.++|+|.+.           ||+.+..+.++...|+++|
T Consensus        84 ~g~id~lv~~Ag~~------~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  157 (267)
T 2gdz_A           84 FGRLDILVNNAGVN------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASK  157 (267)
T ss_dssp             HSCCCEEEECCCCC------CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             cCCCCEEEECCCCC------ChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCCCCchHHHHH
Confidence            99999999999975      246799999999999999999999999752           4555566667788999999


Q ss_pred             ccccCCCCcc---------ccccCccCCCCcccCCHHHHHHHH--H-------HHHHHHHHH--HhcccccccccccccC
Q psy4246         269 LDLSLPVSGS---------YFNNCCRCPPSKAAQDEALATKLW--K-------LSEEMIQSV--VSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~--~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..         +..+++.+.|+...++..  ....  .       ..+.+ ..+  ..++++|+|||.+++|
T Consensus       158 ~a~~-~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dvA~~v~~  233 (267)
T 2gdz_A          158 HGIV-GFTRSAALAANLMNSGVRLNAICPGFVNTAIL--ESIEKEENMGQYIEYKDHI-KDMIKYYGILDPPLIANGLIT  233 (267)
T ss_dssp             HHHH-HHHHHHHHHHHHHTCCEEEEEEEESCBSSHHH--HGGGCHHHHGGGGGGHHHH-HHHHHHHCCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHhccCCcEEEEEecCcCcchhh--hccccccccchhhhHHHHH-HHHhccccCCCHHHHHHHHHH
Confidence            9998 76643         335566666776655432  1110  0       00111 112  3457799999998875

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.95  E-value=3.8e-29  Score=246.98  Aligned_cols=193  Identities=15%  Similarity=0.190  Sum_probs=153.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|+.|+++|++|+++++..  ++++.+++...  +.++..+.+|++  ++++++++++.+
T Consensus       318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~~--g~~~~~~~~Dv~--~~~~~~~~~~~~  391 (604)
T 2et6_A          318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKAA--GGEAWPDQHDVA--KDSEAIIKNVID  391 (604)
T ss_dssp             CCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHHT--TCEEEEECCCHH--HHHHHHHHHHHH
T ss_pred             cccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHhc--CCeEEEEEcChH--HHHHHHHHHHHH
Confidence            468999999999999999999999999999999998632  34455566554  557888889984  456788999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      +||+||+||||||+.  .++.+++.++|+++|++|+.|+|+++++++|+|+++        ||+.+..+.++...|++||
T Consensus       392 ~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~~~~~Y~asK  471 (604)
T 2et6_A          392 KYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSK  471 (604)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTBHHHHHHH
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCChhHHHHH
Confidence            999999999999985  457889999999999999999999999999999764        6667777788899999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +++. +++       +.+.++++.+.|+. .++..  .....       ....+.++|+|||.+++|
T Consensus       472 aal~-~lt~~la~El~~~gIrVn~v~PG~-~T~m~--~~~~~-------~~~~~~~~pe~vA~~v~~  527 (604)
T 2et6_A          472 AGIL-GLSKTMAIEGAKNNIKVNIVAPHA-ETAMT--LSIMR-------EQDKNLYHADQVAPLLVY  527 (604)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECC-CCCC------------------CCSSCGGGTHHHHHH
T ss_pred             HHHH-HHHHHHHHHhCccCeEEEEEcCCC-CCccc--cccCc-------hhhccCCCHHHHHHHHHH
Confidence            9999 777       34667788777774 44321  11110       112467899999998876

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.95  E-value=3.9e-29  Score=222.51  Aligned_cols=207  Identities=18%  Similarity=0.224  Sum_probs=157.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+...+..+++.... +.++.++.+|++|.++++++++++.+
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~   88 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDA   88 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999997766655555554432 45789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceeccccc-------
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAA-------  260 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~-------  260 (328)
                      .++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.         ||..+..+.+.       
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~  168 (265)
T 1h5q_A           89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLT  168 (265)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEECS
T ss_pred             hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccccccccc
Confidence            999999999999985  445678999999999999999999999999999753         34333333222       


Q ss_pred             chhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         261 TSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       261 ~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ...|+++|++++ .++..       +..+++.+.|+...++..... .....+.... .+++|+++|+|+|.+++|
T Consensus       169 ~~~Y~~sK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~dva~~~~~  242 (265)
T 1h5q_A          169 QVFYNSSKAACS-NLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM-DKKIRDHQASNIPLNRFAQPEEMTGQAIL  242 (265)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS-CHHHHHHHHHTCTTSSCBCGGGGHHHHHH
T ss_pred             ccccHHHHHHHH-HHHHHHHHHHHhcCcEEEEEecCcccccccccc-chhHHHHHHhcCcccCCCCHHHHHHHHHh
Confidence            678999999998 66633       234556666665554421110 0011111111 237899999999998765

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.95  E-value=7.5e-29  Score=225.13  Aligned_cols=208  Identities=17%  Similarity=0.187  Sum_probs=162.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.... +.++.++.+|++|.++++++++++.+
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK  100 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999988887777776542 45789999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      .++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.         ||+.+..+.++...|+++
T Consensus       101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~s  180 (302)
T 1w6u_A          101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASA  180 (302)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCCCcchhHHH
Confidence            999999999999974  445678999999999999999999999999999732         555566667788899999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHH--HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK--LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |++++ .++..       +..+++.+.|+...++......  .......... .+++|+++|+|+|.+++|
T Consensus       181 K~a~~-~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~  250 (302)
T 1w6u_A          181 KAGVE-AMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAF  250 (302)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence            99998 66633       3345566666655443211110  0000011111 237899999999998764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.95  E-value=4.6e-29  Score=221.02  Aligned_cols=205  Identities=17%  Similarity=0.216  Sum_probs=159.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +|++|++|||||++|||++++++|+++|++|++++|+ .+.+++...++...  +.++.++.+|++|+++++++++++.+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVA   81 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999998 77777777777654  56899999999999999999999999


Q ss_pred             hcCCccEEEEcccc-C--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------------cccceec-ccccc
Q psy4246         199 KFRSLNILVLNAGV-F--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------------AKLFARQ-QGAAT  261 (328)
Q Consensus       199 ~~g~id~lvnnAg~-~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------------ss~~~~~-~~~~~  261 (328)
                      +++++|+||||||+ .  .++.+.+.++|++++++|+.|+++++++++|+|.+.             ||+.+.. +.++.
T Consensus        82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~  161 (258)
T 3afn_B           82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGA  161 (258)
T ss_dssp             HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCTTC
T ss_pred             HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCCCc
Confidence            99999999999997 3  345678899999999999999999999999998642             3444444 56678


Q ss_pred             hhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         262 SIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       262 ~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ..|+++|++++ .++..       +..+++.+.|+...++..... .....+.... .+++|+++|+|+|.+++|
T Consensus       162 ~~Y~~sK~a~~-~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~dva~~~~~  234 (258)
T 3afn_B          162 GLYGAAKAFLH-NVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK-TQDVRDRISNGIPMGRFGTAEEMAPAFLF  234 (258)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC-CHHHHHHHHTTCTTCSCBCGGGTHHHHHH
T ss_pred             hHHHHHHHHHH-HHHHHHHHhhcccCeEEEEEeCCCccccccccc-CHHHHHHHhccCCCCcCCCHHHHHHHHHH
Confidence            89999999998 66532       234555566665544321100 0011111111 236899999999998764

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.95  E-value=1.2e-29  Score=223.78  Aligned_cols=191  Identities=17%  Similarity=0.171  Sum_probs=151.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHH-CCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLAL-HGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~-~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .++|++|||||++|||+++|++|++ .|++|++++|+.+.            ...++.++.+|++|.++++++++.+.  
T Consensus         2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~------------~~~~~~~~~~Dv~~~~~v~~~~~~~~--   67 (244)
T 4e4y_A            2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF------------SAENLKFIKADLTKQQDITNVLDIIK--   67 (244)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC------------CCTTEEEEECCTTCHHHHHHHHHHTT--
T ss_pred             CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc------------ccccceEEecCcCCHHHHHHHHHHHH--
Confidence            4689999999999999999999999 78999999987541            13367889999999999999996553  


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCccc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      ++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|+++      ||..+..+.++...|+++|+++
T Consensus        68 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~asKaa~  147 (244)
T 4e4y_A           68 NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKPNSFAYTLSKGAI  147 (244)
T ss_dssp             TCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCTTBHHHHHHHHHH
T ss_pred             hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCCCCchhHHHHHHH
Confidence            78999999999985  467789999999999999999999999999999875      5666677778899999999999


Q ss_pred             cCCCCc-------cccccCccCCCCcccCCHHHHHHHHH------------HHHHHHH-HHHhcccccccccccccC
Q psy4246         272 SLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWK------------LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      + .++.       .+..+++.+.|+...++..  .....            ..+.... .+++|+++|+|+|.+++|
T Consensus       148 ~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~  221 (244)
T 4e4y_A          148 A-QMTKSLALDLAKYQIRVNTVCPGTVDTDLY--RNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIF  221 (244)
T ss_dssp             H-HHHHHHHHHHGGGTCEEEEEEESCBCCHHH--HHHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHcCeEEEEEecCccCchhh--HHHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            9 7763       3456677777777665532  22111            1111111 137899999999998875

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.95  E-value=3.9e-29  Score=220.45  Aligned_cols=194  Identities=10%  Similarity=-0.023  Sum_probs=151.4

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEe-e--CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILA-C--RSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ||++|||||++|||+++|+.|+++|++|+++ +  |+.+.+++...++  .  +       +|+.|.++++++++++.+.
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~--~--~-------~~~~~~~~v~~~~~~~~~~   69 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN--P--G-------TIALAEQKPERLVDATLQH   69 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS--T--T-------EEECCCCCGGGHHHHHGGG
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh--C--C-------CcccCHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999 6  9988777665554  1  2       2333778889999999999


Q ss_pred             cCCccEEEEccccC-----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         200 FRSLNILVLNAGVF-----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       200 ~g~id~lvnnAg~~-----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      +|++|+||||||+.     .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|++
T Consensus        70 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~a  149 (244)
T 1zmo_A           70 GEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGP  149 (244)
T ss_dssp             SSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTCTTHHH
T ss_pred             cCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCCCchHHHH
Confidence            99999999999985     456788999999999999999999999999999764        66666677788899999


Q ss_pred             cCccccCCCCc-------cccccCccCCCCcccCCHH---HHHHHHHHHHHHHH--HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEA---LATKLWKLSEEMIQ--SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++.       .+..+++.+.|+...++..   ......+..++...  .+++|+++|+|+|.+++|
T Consensus       150 sK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pe~vA~~v~~  222 (244)
T 1zmo_A          150 ARAATV-ALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLGRPDEMGALITF  222 (244)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHHHCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            999998 7663       3345677777777666542   11000011122222  247899999999998875

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.95  E-value=1.5e-28  Score=220.33  Aligned_cols=206  Identities=19%  Similarity=0.234  Sum_probs=156.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|++|+++|++|++++|+.+..++...++..   ..++.++.+|++|+++++++++++.+
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~   88 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIA   88 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCC---CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999998777666655522   23789999999999999999999999


Q ss_pred             hcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccc-cchhhh
Q psy4246         199 KFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGA-ATSIYC  265 (328)
Q Consensus       199 ~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~-~~~~y~  265 (328)
                      +++++|+||||||+.    .++.+.+.++|++++++|+.|+++++++++|+|.++        ||..+..+.+ +...|+
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~Y~  168 (278)
T 2bgk_A           89 KHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYT  168 (278)
T ss_dssp             HHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHH
T ss_pred             HcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCCCCCcchH
Confidence            999999999999985    345678899999999999999999999999999864        5555555555 678899


Q ss_pred             ccCccccCCCCcc-------ccccCccCCCCcccCCHHHH--HHHHHHHHHHHHH---HHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALA--TKLWKLSEEMIQS---VVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++..       +..+++.+.|+...++....  .......+.+...   +.+|+.+|+|+|.+++|
T Consensus       169 ~sK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  242 (278)
T 2bgk_A          169 ATKHAVL-GLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAY  242 (278)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcccccccccCCHHHHHHHHHH
Confidence            9999998 66533       23445555554443331100  0000011111111   25789999999988764

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.95  E-value=7e-29  Score=220.14  Aligned_cols=196  Identities=13%  Similarity=0.055  Sum_probs=150.3

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||++|||+++|++|+++|++|++++|+.+.++...+ +...  +.++..+     |.++++++++++.+.+|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~--~~~~~~~-----d~~~v~~~~~~~~~~~g~i   73 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAET--YPQLKPM-----SEQEPAELIEAVTSAYGQV   73 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHH--CTTSEEC-----CCCSHHHHHHHHHHHHSCC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhc--CCcEEEE-----CHHHHHHHHHHHHHHhCCC
Confidence            689999999999999999999999999999999887766554 5443  3344443     6778899999999999999


Q ss_pred             cEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         204 NILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       204 d~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      |+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|++++
T Consensus        74 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~  153 (254)
T 1zmt_A           74 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGAC  153 (254)
T ss_dssp             CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHH
T ss_pred             CEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCCCchHHHHHHHHHH
Confidence            9999999985   345788999999999999999999999999999764        55566666778899999999998


Q ss_pred             CCCCcc-------ccccCccCCCCcccC-------CHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         273 LPVSGS-------YFNNCCRCPPSKAAQ-------DEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~g~-------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                       .++..       +..+++.+.|+....       ++.+.....+..+..... +++|+++|+|+|.+++|
T Consensus       154 -~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~  223 (254)
T 1zmt_A          154 -TLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAF  223 (254)
T ss_dssp             -HHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSSCBCHHHHHHHHHH
T ss_pred             -HHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCCCCCCcCHHHHHHHHHH
Confidence             76632       345666666666510       233222111111222222 37899999999998875

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.95  E-value=3.3e-30  Score=237.23  Aligned_cols=173  Identities=11%  Similarity=0.117  Sum_probs=136.9

Q ss_pred             CCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCChh---------HHHHHHHHHHh-hCCCCeEEEEEcccCCH--H
Q psy4246         122 SNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLD---------KANDAISKILT-EKPSAQCIAMELNLCRL--K  187 (328)
Q Consensus       122 ~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~~~---------~~~~~~~~l~~-~~~~~~~~~~~~Dls~~--~  187 (328)
                      .+|++|||||++  |||+++|++|+++|++|++++++..         +++.....+.. ......+.++.||+++.  +
T Consensus         1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~   80 (329)
T 3lt0_A            1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence            478999999986  9999999999999999998877642         11111111111 11123578899999988  8


Q ss_pred             ------------------HHHHHHHHHHHhcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         188 ------------------SVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       188 ------------------~v~~~~~~~~~~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                                        +++++++++.+++|+||+||||||+.    .++.+.+.++|+++|++|+.|+++++++++|+
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  160 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                              99999999999999999999999973    55678999999999999999999999999999


Q ss_pred             HHhc------cccceecccccch-hhhccCccccCCCC-------cc-ccccCccCCCCcccCCH
Q psy4246         246 LIKG------AKLFARQQGAATS-IYCATSLDLSLPVS-------GS-YFNNCCRCPPSKAAQDE  295 (328)
Q Consensus       246 ~~~~------ss~~~~~~~~~~~-~y~ask~al~~~~~-------g~-~~~~~~~~~~~~~~~~~  295 (328)
                      |+++      +|+.+..+.++.. .|+++|+++. +++       +. +..+++.+.|+...++.
T Consensus       161 m~~~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~-~~~~~la~el~~~~gI~vn~v~PG~v~T~~  224 (329)
T 3lt0_A          161 MKPQSSIISLTYHASQKVVPGYGGGMSSAKAALE-SDTRVLAYHLGRNYNIRINTISAGPLKSRA  224 (329)
T ss_dssp             EEEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHH-HHHHHHHHHHHHHHCCEEEEEEECCCCCHH
T ss_pred             HhhCCeEEEEeCccccCCCCcchHHHHHHHHHHH-HHHHHHHHHhCCccCeEEEEEecceeechh
Confidence            9886      5556667777775 9999999998 766       23 45667777777666553

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.95  E-value=4.9e-29  Score=238.45  Aligned_cols=202  Identities=19%  Similarity=0.141  Sum_probs=156.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ..++||++|||||++|||+++|+.|+++|++|++++|+... ++..+.....    .+.++.||++|.++++++++++.+
T Consensus       209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~~----~~~~~~~Dvtd~~~v~~~~~~~~~  283 (454)
T 3u0b_A          209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADKV----GGTALTLDVTADDAVDKITAHVTE  283 (454)
T ss_dssp             STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHHH----TCEEEECCTTSTTHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999987432 2222222221    346899999999999999999999


Q ss_pred             hcCC-ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KFRS-LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~-id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      ++++ ||+||||||+.  .++.+++.++|+++|++|+.|+++++++++|.|.++        ||+.+..+.++...|+++
T Consensus       284 ~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~g~~~Yaas  363 (454)
T 3u0b_A          284 HHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATT  363 (454)
T ss_dssp             HSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCTTCHHHHHH
T ss_pred             HcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCCCCHHHHHH
Confidence            9986 99999999986  456789999999999999999999999999998754        777788888999999999


Q ss_pred             CccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHH--HHhcccccccccccccC
Q psy4246         268 SLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS--VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~g~p~dia~~v~F  328 (328)
                      |+++. +++..       +..+++.+.|+...++...  .......+....  +++|+++|+|||++++|
T Consensus       364 Kaal~-~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~--~~~~~~~~~~~~~~~l~r~g~pedvA~~v~f  430 (454)
T 3u0b_A          364 KAGMI-GLAEALAPVLADKGITINAVAPGFIETKMTE--AIPLATREVGRRLNSLFQGGQPVDVAELIAY  430 (454)
T ss_dssp             HHHHH-HHHHHHHHHHHTTTCEEEEEEECSBCC------------CHHHHHSBTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhcCcEEEEEEcCcccChhhh--hcchhhHHHHHhhccccCCCCHHHHHHHHHH
Confidence            99998 76632       3456677777777665432  222111222222  37899999999999876

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.95  E-value=9.6e-29  Score=221.43  Aligned_cols=196  Identities=20%  Similarity=0.208  Sum_probs=159.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|.++++++++++.+
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~  104 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKA  104 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc--CCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998888877777654  55899999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      .++++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|.|.+.        ||+.+..+.++...|+++|
T Consensus       105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK  184 (272)
T 1yb1_A          105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSK  184 (272)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHHH
T ss_pred             HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCchhHHHHH
Confidence            999999999999985  345667889999999999999999999999999764        5556666667788999999


Q ss_pred             ccccCCCCccc----------cccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q psy4246         269 LDLSLPVSGSY----------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVV  327 (328)
Q Consensus       269 ~al~~~~~g~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~  327 (328)
                      ++++ .++..+          ..+++.+.|+...++..  ..        ....++++.+|+|+|..++
T Consensus       185 ~a~~-~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~--~~--------~~~~~~~~~~~~dva~~i~  242 (272)
T 1yb1_A          185 FAAV-GFHKTLTDELAALQITGVKTTCLCPNFVNTGFI--KN--------PSTSLGPTLEPEEVVNRLM  242 (272)
T ss_dssp             HHHH-HHHHHHHHHHHHTTCTTEEEEEEEETHHHHCST--TC--------THHHHCCCCCHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc--cc--------ccccccCCCCHHHHHHHHH
Confidence            9998 665322          34455555665443321  00        0123678899999988765

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.95  E-value=5.2e-29  Score=217.64  Aligned_cols=188  Identities=18%  Similarity=0.128  Sum_probs=145.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||++|||+++|++|+++|++|++++|+.+.++++.+++     +.++.++.+|+++.++++++++++.+.   +
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~---~   73 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSI---P   73 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSC---C
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhc---C
Confidence            68999999999999999999999999999999998877666554     457889999999999999998877543   4


Q ss_pred             cEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCccccCC
Q psy4246         204 NILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLDLSLP  274 (328)
Q Consensus       204 d~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~al~~~  274 (328)
                      |+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.++       ||..+..+.++...|+++|++++ .
T Consensus        74 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa~~-~  152 (230)
T 3guy_A           74 STVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKAQESTYCAVKWAVK-G  152 (230)
T ss_dssp             SEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCTTCHHHHHHHHHHH-H
T ss_pred             CEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCCCCchhHHHHHHHH-H
Confidence            9999999985  456688999999999999999999999999999874       66667777788999999999998 6


Q ss_pred             CCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         275 VSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       275 ~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++.       .+..+++.+.|+...++.  .....      .....+|+++|+|+|.+++|
T Consensus       153 ~~~~la~e~~~~gi~v~~v~PG~v~t~~--~~~~~------~~~~~~~~~~~~dvA~~i~~  205 (230)
T 3guy_A          153 LIESVRLELKGKPMKIIAVYPGGMATEF--WETSG------KSLDTSSFMSAEDAALMIHG  205 (230)
T ss_dssp             HHHHHHHHTTTSSCEEEEEEECCC------------------------CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCeEEEEEECCcccChH--HHhcC------CCCCcccCCCHHHHHHHHHH
Confidence            663       234556666666665542  21111      11247899999999998865

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.95  E-value=2.6e-28  Score=214.71  Aligned_cols=201  Identities=18%  Similarity=0.229  Sum_probs=156.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEE-EEcccCCHHHHHHHHHHHHHhc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIA-MELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~-~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +|++|||||++|||+++|++|+++|++|+++ +|+.+.+++...++...  +.++.. +.+|++|.++++++++++.+.+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR--GSPLVAVLGANLLEAEAATALVHQAAEVL   78 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence            4789999999999999999999999999998 89988887777776654  446666 8999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      +++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|.|++.        ||+.+..+.++...|+++|++
T Consensus        79 ~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a  158 (245)
T 2ph3_A           79 GGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAG  158 (245)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCSSBHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCCCCcchHHHHHH
Confidence            9999999999985  345678999999999999999999999999999764        555555666778899999999


Q ss_pred             ccCCCCccc-------cccCccCCCCcccCCHHHHHHHH-HHHHHHHH-HHHhcccccccccccccC
Q psy4246         271 LSLPVSGSY-------FNNCCRCPPSKAAQDEALATKLW-KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++ .++..+       ..+++.+.|+...++..  ..+. ...+.... .+++|+++|+|+|.+++|
T Consensus       159 ~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  222 (245)
T 2ph3_A          159 LI-GFTRAVAKEYAQRGITVNAVAPGFIETEMT--ERLPQEVKEAYLKQIPAGRFGRPEEVAEAVAF  222 (245)
T ss_dssp             HH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHH--HTSCHHHHHHHHHTCTTCSCBCHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHcCeEEEEEEEEeecCcch--hhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            88 655332       34455555665544322  1111 11111111 136789999999988754

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.95  E-value=4.5e-29  Score=217.10  Aligned_cols=183  Identities=17%  Similarity=0.166  Sum_probs=142.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++|++|||||++|||+++|++|+++|++|++++|+.+                      +|++|+++++++++++  
T Consensus         2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----------------------~D~~~~~~v~~~~~~~--   57 (223)
T 3uce_A            2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG----------------------LDISDEKSVYHYFETI--   57 (223)
T ss_dssp             ---CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT----------------------CCTTCHHHHHHHHHHH--
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc----------------------cCCCCHHHHHHHHHHh--
Confidence            4688999999999999999999999999999999998753                      8999999999988765  


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~  269 (328)
                        +++|+||||||+.   .++.+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...|+++|+
T Consensus        58 --g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~asK~  135 (223)
T 3uce_A           58 --GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVANTYVKAAINA  135 (223)
T ss_dssp             --CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             --CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCCCchHHHHHHH
Confidence              8999999999975   456789999999999999999999999999999875      56666777788899999999


Q ss_pred             cccCCCCcccc-----ccCccCCCCcccCCHHH---HHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVSGSYF-----NNCCRCPPSKAAQDEAL---ATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..+.     .+++.+.|+...++...   ........+.... .+++|+++|+|+|.+++|
T Consensus       136 a~~-~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~  202 (223)
T 3uce_A          136 AIE-ATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPVGKVGEASDIAMAYLF  202 (223)
T ss_dssp             HHH-HHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTTCSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Confidence            998 7663321     45566666665554210   0111111122222 248999999999998765

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.95  E-value=1.6e-28  Score=223.06  Aligned_cols=208  Identities=19%  Similarity=0.183  Sum_probs=160.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC---CCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK---PSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ..|++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++....   .+.++.++.+|++|.+++++++++
T Consensus        14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   93 (303)
T 1yxm_A           14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   93 (303)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999999999988888877776521   255899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhh
Q psy4246         196 YQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYC  265 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~  265 (328)
                      +.+.+|++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|.+.+.        ||.. ..+.+....|+
T Consensus        94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~~~~~~Y~  172 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFPLAVHSG  172 (303)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCTTCHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCCCcchhhH
Confidence            999999999999999974  445678899999999999999999999999965432        3333 45566788999


Q ss_pred             ccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH---HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL---WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++|+++. +++..       +..+++.+.|+...++..+....   ....+.... .+++|+++|+|+|.+++|
T Consensus       173 ~sK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~  245 (303)
T 1yxm_A          173 AARAGVY-NLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCF  245 (303)
T ss_dssp             HHHHHHH-HHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcCcccCCCCHHHHHHHHHH
Confidence            9999998 66632       23455556666555542111000   000111111 236899999999998865

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.95  E-value=4.2e-28  Score=216.87  Aligned_cols=207  Identities=17%  Similarity=0.224  Sum_probs=160.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++++|++|||||++|||++++++|+++|++|++++| +.+.+++...++...  +.++.++.+|++|+++++++++++.
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   94 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAV   94 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999 777777777777654  5678899999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------ccccee-cccccchhhhccC
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFAR-QQGAATSIYCATS  268 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~-~~~~~~~~y~ask  268 (328)
                      +.++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++++|++.      ||..+. .+.++...|+++|
T Consensus        95 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK  174 (274)
T 1ja9_A           95 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPNHALYAGSK  174 (274)
T ss_dssp             HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCCSCHHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCCCCCchHHHHH
Confidence            9999999999999985  345678999999999999999999999999998643      555555 5567788999999


Q ss_pred             ccccCCCCccc-------cccCccCCCCcccCCHHHHH----------HH--HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSGSY-------FNNCCRCPPSKAAQDEALAT----------KL--WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++..+       ..+++...|+...++.....          ..  .+..+.... .+++|++.|+|+|.+++|
T Consensus       175 ~a~~-~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~  253 (274)
T 1ja9_A          175 AAVE-GFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSA  253 (274)
T ss_dssp             HHHH-HHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcCCCCCccCHHHHHHHHHH
Confidence            9998 665332       34455555665544332100          00  011111111 136889999999988764

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.95  E-value=2.9e-28  Score=224.09  Aligned_cols=204  Identities=15%  Similarity=0.124  Sum_probs=150.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHh----hCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILT----EKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++|++|||||++|||+++|++|+++|++|++++|+...++.....+..    ...+.++.++.+|++|.++++++++++ 
T Consensus         1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-   79 (327)
T 1jtv_A            1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV-   79 (327)
T ss_dssp             CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHH-
Confidence            478999999999999999999999999998887765433322222221    112457899999999999999999988 


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                       .+|++|+||||||+.  .++.+.+.++|+++|++|+.|+++++++++|+|+++        ||+.+..+.+....|+++
T Consensus        80 -~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~~~~~Y~aS  158 (327)
T 1jtv_A           80 -TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCAS  158 (327)
T ss_dssp             -TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHHH
T ss_pred             -hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCCCCChHHHHH
Confidence             358999999999985  456778999999999999999999999999999754        566666667788999999


Q ss_pred             CccccCCCCc-------cccccCccCCCCcccCCHHHHH-----HHH--------HHHHHHH---HHHHhccc-cccccc
Q psy4246         268 SLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALAT-----KLW--------KLSEEMI---QSVVSTWL-EETTER  323 (328)
Q Consensus       268 k~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~---~~~~~r~g-~p~dia  323 (328)
                      |++++ .++.       .+..+++.+.|+...++.....     ..+        +......   ..+++|++ +|+|||
T Consensus       159 K~a~~-~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA  237 (327)
T 1jtv_A          159 KFALE-GLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVA  237 (327)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHH
Confidence            99998 6663       2445666677776665532110     000        0001111   12356764 899999


Q ss_pred             ccccC
Q psy4246         324 GEVVF  328 (328)
Q Consensus       324 ~~v~F  328 (328)
                      .+++|
T Consensus       238 ~~i~~  242 (327)
T 1jtv_A          238 EVFLT  242 (327)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.95  E-value=3.6e-28  Score=213.86  Aligned_cols=194  Identities=20%  Similarity=0.213  Sum_probs=155.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCC-------eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGC-------RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga-------~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +|++|||||++|||+++|++|+++|+       +|++++|+.+.++.+..++...  +.++.++.+|++|++++++++++
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~   79 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTH   79 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHH
Confidence            68999999999999999999999999       9999999988888777777543  56899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhh
Q psy4246         196 YQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYC  265 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~  265 (328)
                      +.+.++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|.+.        ||+.+..+.++...|+
T Consensus        80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~  159 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYC  159 (244)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHH
T ss_pred             HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCCCCchhH
Confidence            999999999999999985  445678999999999999999999999999999754        5666666777889999


Q ss_pred             ccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++|++++ .++.       .+..+++...|+...++....  ...  +.     ..++.+|+|+|.+++|
T Consensus       160 ~sK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~--~~-----~~~~~~~~dva~~~~~  219 (244)
T 2bd0_A          160 MSKFGQR-GLVETMRLYARKCNVRITDVQPGAVYTPMWGK--VDD--EM-----QALMMMPEDIAAPVVQ  219 (244)
T ss_dssp             HHHHHHH-HHHHHHHHHHTTTTEEEEEEEECCBCSTTTCC--CCS--TT-----GGGSBCHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHhhccCcEEEEEECCCccchhhhh--ccc--cc-----cccCCCHHHHHHHHHH
Confidence            9999998 6552       233445555555544432100  000  00     1378899999987764

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.94  E-value=4.3e-28  Score=222.07  Aligned_cols=194  Identities=17%  Similarity=0.201  Sum_probs=151.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee---------CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILAC---------RSLDKANDAISKILTEKPSAQCIAMELNLCRLKSV  189 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~---------r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v  189 (328)
                      ++|+||++|||||++|||+++|+.|+++|++|++++         |+.+++++..+++...  +..   ..+|+++.+++
T Consensus         5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~--~~~---~~~D~~~~~~~   79 (319)
T 1gz6_A            5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR--GGK---AVANYDSVEAG   79 (319)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT--TCE---EEEECCCGGGH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhh--CCe---EEEeCCCHHHH
Confidence            468999999999999999999999999999999964         5667777777777654  223   35899999999


Q ss_pred             HHHHHHHHHhcCCccEEEEccccCC--CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccc
Q psy4246         190 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGA  259 (328)
Q Consensus       190 ~~~~~~~~~~~g~id~lvnnAg~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~  259 (328)
                      +++++++.+.+++||+||||||+..  ++.+.+.++|+.+|++|+.|+++++++++|+|+++        ||+.+..+.+
T Consensus        80 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~  159 (319)
T 1gz6_A           80 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF  159 (319)
T ss_dssp             HHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC
Confidence            9999999999999999999999863  35678999999999999999999999999999764        5555566667


Q ss_pred             cchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         260 ATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       260 ~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +...|+++|+++. .++.       .+..+++.+.|+.. ++.  .....  ..     ...++.+|+|+|.+++|
T Consensus       160 ~~~~Y~aSK~a~~-~~~~~la~el~~~gI~vn~v~PG~~-t~~--~~~~~--~~-----~~~~~~~p~dvA~~~~~  224 (319)
T 1gz6_A          160 GQANYSAAKLGLL-GLANTLVIEGRKNNIHCNTIAPNAG-SRM--TETVM--PE-----DLVEALKPEYVAPLVLW  224 (319)
T ss_dssp             TCHHHHHHHHHHH-HHHHHHHHHTGGGTEEEEEEEEECC-STT--TGGGS--CH-----HHHHHSCGGGTHHHHHH
T ss_pred             CCHHHHHHHHHHH-HHHHHHHHHhcccCEEEEEEeCCCc-ccc--ccccC--Ch-----hhhccCCHHHHHHHHHH
Confidence            8899999999998 6663       23455666666654 221  11000  00     12346789999988765

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.94  E-value=1.2e-28  Score=225.86  Aligned_cols=209  Identities=12%  Similarity=0.102  Sum_probs=126.5

Q ss_pred             cCCCCCCceEEEcCC--CCCccHHHHHHHHHCCCeEEEeeCCh-----------hHHH-----------HHHHHHHhhCC
Q psy4246         117 HGRDLSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSL-----------DKAN-----------DAISKILTEKP  172 (328)
Q Consensus       117 ~~~~l~~k~~lITGa--s~GIG~a~a~~la~~Ga~Vi~~~r~~-----------~~~~-----------~~~~~l~~~~~  172 (328)
                      +.++|+||++|||||  ++|||+++|+.|+++|++|++++|+.           +.++           ++.+++.....
T Consensus         3 ~~~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (319)
T 2ptg_A            3 LPVDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPV   82 (319)
T ss_dssp             CCCCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC------------------------------
T ss_pred             cccccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccc
Confidence            345689999999999  89999999999999999999998753           1111           12222222100


Q ss_pred             C-CeEEEEEcc------------cCC--------HHHHHHHHHHHHHhcCCccEEEEccccC----CCCCCCChhHHHHH
Q psy4246         173 S-AQCIAMELN------------LCR--------LKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETT  227 (328)
Q Consensus       173 ~-~~~~~~~~D------------ls~--------~~~v~~~~~~~~~~~g~id~lvnnAg~~----~~~~~~~~~~~~~~  227 (328)
                      . ..+.++.+|            ++|        +++++++++++.+++|+||+||||||+.    .++.+.+.++|+++
T Consensus        83 ~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~  162 (319)
T 2ptg_A           83 DLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAA  162 (319)
T ss_dssp             --CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHH
T ss_pred             cccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHH
Confidence            0 002333333            333        4589999999999999999999999974    45678899999999


Q ss_pred             HhhhhHHHHHHHHHHHHHHHhc------cccceecccccc-hhhhccCccccCCCCc-------c-ccccCccCCCCccc
Q psy4246         228 FQVNHLAHFYLTLQLENALIKG------AKLFARQQGAAT-SIYCATSLDLSLPVSG-------S-YFNNCCRCPPSKAA  292 (328)
Q Consensus       228 ~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~-~~y~ask~al~~~~~g-------~-~~~~~~~~~~~~~~  292 (328)
                      |++|+.|+++++++++|+|++.      ||+.+..+.++. ..|+++|+++. +++.       . +..+++.+.|+...
T Consensus       163 ~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~-~l~~~la~el~~~~gIrvn~v~PG~v~  241 (319)
T 2ptg_A          163 VSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVIPGYGGGMSSAKAALE-SDCRTLAFEAGRARAVRVNCISAGPLK  241 (319)
T ss_dssp             HHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC------------------TH-HHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_pred             HhHhhHHHHHHHHHHHHHHhcCceEEEEeccccccccCccchhhHHHHHHHH-HHHHHHHHHhccccCeeEEEEeeCCcc
Confidence            9999999999999999999765      444455555666 68999999999 7663       2 45677777777766


Q ss_pred             CCHHHHHHHH--------H-HHHHHH-HHHHhcccccccccccccC
Q psy4246         293 QDEALATKLW--------K-LSEEMI-QSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       293 ~~~~~~~~~~--------~-~~~~~~-~~~~~r~g~p~dia~~v~F  328 (328)
                      ++..  ....        + ..+... ..+++|+++|+|||.+++|
T Consensus       242 T~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~  285 (319)
T 2ptg_A          242 SRAA--SAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAALF  285 (319)
T ss_dssp             ---------------------------------CCCHHHHHHHHHH
T ss_pred             Chhh--hhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Confidence            6532  1111        0 001111 1258999999999999876

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.94  E-value=1.5e-28  Score=224.87  Aligned_cols=210  Identities=15%  Similarity=0.125  Sum_probs=149.0

Q ss_pred             CCCCCCceEEEcCC--CCCccHHHHHHHHHCCCeEEEeeCChhH------HH-HHHHHHHhhCCCCe---EEEEEc----
Q psy4246         118 GRDLSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDK------AN-DAISKILTEKPSAQ---CIAMEL----  181 (328)
Q Consensus       118 ~~~l~~k~~lITGa--s~GIG~a~a~~la~~Ga~Vi~~~r~~~~------~~-~~~~~l~~~~~~~~---~~~~~~----  181 (328)
                      .++|+||++|||||  ++|||+++|+.|+++|++|++++|+...      .. ...+++.....+..   +.++.+    
T Consensus         4 ~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (315)
T 2o2s_A            4 PIDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAF   83 (315)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTC
T ss_pred             cccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccc
Confidence            45689999999999  8999999999999999999999986410      00 00111111111111   233333    


Q ss_pred             --------ccCC--------HHHHHHHHHHHHHhcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHH
Q psy4246         182 --------NLCR--------LKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQ  241 (328)
Q Consensus       182 --------Dls~--------~~~v~~~~~~~~~~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~  241 (328)
                              |++|        .++++++++++.+++|+||+||||||+.    .++.+.+.++|++++++|+.|+++++++
T Consensus        84 ~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~  163 (315)
T 2o2s_A           84 DKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQH  163 (315)
T ss_dssp             SSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHH
Confidence                    3443        6689999999999999999999999974    4567889999999999999999999999


Q ss_pred             HHHHHHhc------cccceecccccc-hhhhccCccccCCCCc-------c-ccccCccCCCCcccCCHHHHHH------
Q psy4246         242 LENALIKG------AKLFARQQGAAT-SIYCATSLDLSLPVSG-------S-YFNNCCRCPPSKAAQDEALATK------  300 (328)
Q Consensus       242 ~~~~~~~~------ss~~~~~~~~~~-~~y~ask~al~~~~~g-------~-~~~~~~~~~~~~~~~~~~~~~~------  300 (328)
                      ++|+|++.      ||+.+..+.++. ..|+++|+++. +++.       . +..+++.+.|+...++......      
T Consensus       164 ~~~~m~~~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~-~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~  242 (315)
T 2o2s_A          164 FGPIMNEGGSAVTLSYLAAERVVPGYGGGMSSAKAALE-SDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEKS  242 (315)
T ss_dssp             HSTTEEEEEEEEEEEEGGGTSCCTTCCTTHHHHHHHHH-HHHHHHHHHHHHHTCCEEEEEEECCCCCHHHHHTTCSSSSC
T ss_pred             HHHHHhcCCEEEEEecccccccCCCccHHHHHHHHHHH-HHHHHHHHHhCcccCeEEEEEecccccchhhhhccccccch
Confidence            99999765      444555555666 58999999998 7662       2 4566777777776664321100      


Q ss_pred             HHH-HHHHHHH-HHHhcccccccccccccC
Q psy4246         301 LWK-LSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       301 ~~~-~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ..+ ..+.... .+++|+++|+|||.+++|
T Consensus       243 ~~~~~~~~~~~~~p~~r~~~pedvA~~v~~  272 (315)
T 2o2s_A          243 FIDYAIDYSYNNAPLRRDLHSDDVGGAALF  272 (315)
T ss_dssp             HHHHHHHHHHHHSSSCCCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Confidence            001 1111112 247899999999999876

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.94  E-value=2.6e-28  Score=241.82  Aligned_cols=195  Identities=19%  Similarity=0.183  Sum_probs=143.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC---------ChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACR---------SLDKANDAISKILTEKPSAQCIAMELNLCRLKS  188 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r---------~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~  188 (328)
                      ..+|+||++|||||++|||+++|+.|+++|++|++++|         +.+.++.+.+++...  +..+   .+|++|.++
T Consensus        14 ~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~--~~~~---~~D~~d~~~   88 (613)
T 3oml_A           14 KLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA--GGEA---VADYNSVID   88 (613)
T ss_dssp             -CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT--TCCE---EECCCCGGG
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh--CCeE---EEEeCCHHH
Confidence            35789999999999999999999999999999999988         666777777777665  3333   489999999


Q ss_pred             HHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceeccc
Q psy4246         189 VKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQG  258 (328)
Q Consensus       189 v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~  258 (328)
                      ++++++++.+.+|+||+||||||+.  .++.+++.++|++++++|+.|+++++++++|+|+++        ||+.+..+.
T Consensus        89 ~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~  168 (613)
T 3oml_A           89 GAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGN  168 (613)
T ss_dssp             HHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCC
T ss_pred             HHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCC
Confidence            9999999999999999999999985  456789999999999999999999999999999876        666777778


Q ss_pred             ccchhhhccCccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         259 AATSIYCATSLDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       259 ~~~~~y~ask~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++...|+++|+++. +++.       .+.++++.+.|+.. +  .+...       .....+.+..+|+|||.+++|
T Consensus       169 ~~~~~Y~asKaal~-~lt~~la~e~~~~gI~vn~v~Pg~~-t--~~~~~-------~~~~~~~~~~~pedvA~~v~~  234 (613)
T 3oml_A          169 FGQVNYTAAKMGLI-GLANTVAIEGARNNVLCNVIVPTAA-S--RMTEG-------ILPDILFNELKPKLIAPVVAY  234 (613)
T ss_dssp             TTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEEC---------CC-------CCCHHHHTTCCGGGTHHHHHH
T ss_pred             CCChHHHHHHHHHH-HHHHHHHHHhCccCeEEEEEECCCC-C--hhhhh-------ccchhhhhcCCHHHHHHHHHH
Confidence            88999999999999 7763       34566676666642 1  11110       001124567899999998875

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.94  E-value=1.4e-27  Score=209.97  Aligned_cols=200  Identities=20%  Similarity=0.252  Sum_probs=151.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|++|++|||||++|||++++++|+++|++|++++|+.++++++..++    +  .+.++.+|++|+++++++++   
T Consensus         2 ~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~~D~~~~~~~~~~~~---   72 (244)
T 3d3w_A            2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----P--GIEPVCVDLGDWEATERALG---   72 (244)
T ss_dssp             CCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----T--TCEEEECCTTCHHHHHHHHT---
T ss_pred             ccccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----C--CCCEEEEeCCCHHHHHHHHH---
Confidence            45789999999999999999999999999999999999987766554432    1  34567999999999888876   


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                       .++++|+||||||+.  .++.+.+.++|++++++|+.++++++++++|+|.++         ||..+..+.++...|++
T Consensus        73 -~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~  151 (244)
T 3d3w_A           73 -SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCS  151 (244)
T ss_dssp             -TCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHH
T ss_pred             -HcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCCCCchHHH
Confidence             568999999999985  345678899999999999999999999999998753         45555566677889999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHH-HHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++...|+...++....... ....+.+.. .+++|+++|+|+|.+++|
T Consensus       152 sK~a~~-~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  221 (244)
T 3d3w_A          152 TKGALD-MLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILF  221 (244)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhhCCCCCCcCHHHHHHHHHH
Confidence            999998 66633       23455666666665543221100 001111211 236899999999998764

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.94  E-value=1.1e-27  Score=225.33  Aligned_cols=205  Identities=8%  Similarity=-0.034  Sum_probs=156.7

Q ss_pred             CCCceEEEcCCCCCccHH--HHHHHHHCCCeEEEeeCChhH------------HHHHHHHHHhhCCCCeEEEEEcccCCH
Q psy4246         121 LSNYNAIVTGANTGIGFE--TARSLALHGCRVILACRSLDK------------ANDAISKILTEKPSAQCIAMELNLCRL  186 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a--~a~~la~~Ga~Vi~~~r~~~~------------~~~~~~~l~~~~~~~~~~~~~~Dls~~  186 (328)
                      ..||++|||||++|||++  +|+.|+++|++|++++|+...            .+.+.+.+...  +.++.++.||++|.
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dvtd~  135 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK--GLVAKNFIEDAFSN  135 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc--CCcEEEEEeeCCCH
Confidence            579999999999999999  999999999999999986543            22333233332  56899999999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccC---------------CCC---------------------CCCChhHHHHHHhh
Q psy4246         187 KSVKKFAEEYQKKFRSLNILVLNAGVF---------------GLG---------------------FSHTEDGFETTFQV  230 (328)
Q Consensus       187 ~~v~~~~~~~~~~~g~id~lvnnAg~~---------------~~~---------------------~~~~~~~~~~~~~v  230 (328)
                      ++++++++++.+++|+||+||||||+.               .++                     .+++.++|+.++++
T Consensus       136 ~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~v  215 (418)
T 4eue_A          136 ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKV  215 (418)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence            999999999999999999999999973               222                     35689999999999


Q ss_pred             hhHHHH-HHHHHHHHHHH-hc-------cccceecccccc--hhhhccCccccCCCC-------cc-ccccCccCCCCcc
Q psy4246         231 NHLAHF-YLTLQLENALI-KG-------AKLFARQQGAAT--SIYCATSLDLSLPVS-------GS-YFNNCCRCPPSKA  291 (328)
Q Consensus       231 N~~g~~-~l~~~~~~~~~-~~-------ss~~~~~~~~~~--~~y~ask~al~~~~~-------g~-~~~~~~~~~~~~~  291 (328)
                      |..+.+ ++++.+.+.+. ..       ||+.+..+.+..  +.|+++|+++. +++       +. +..+++.+.|+..
T Consensus       216 n~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p~~~~~aY~ASKaAL~-~ltrsLA~ELa~~~GIrVN~V~PG~v  294 (418)
T 4eue_A          216 MGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYKIYREGTIGIAKKDLE-DKAKLINEKLNRVIGGRAFVSVNKAL  294 (418)
T ss_dssp             HSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHH-HHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             hhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCCccccHHHHHHHHHHH-HHHHHHHHHhCCccCeEEEEEECCcC
Confidence            999988 77777776433 22       555566666777  89999999999 777       45 6677888888877


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         292 AQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      .++....-............+|+|.|+|||+++.+.|
T Consensus       295 ~T~~s~~ip~~p~y~~~~~~~mk~~G~~E~v~e~~~~  331 (418)
T 4eue_A          295 VTKASAYIPTFPLYAAILYKVMKEKNIHENCIMQIER  331 (418)
T ss_dssp             CCHHHHTSTTHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             cChhhhcCCCCcHHHHHHHHHHhhcCChHHHHHHHHH
Confidence            7754322111112223334469999999999987754

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.94  E-value=3.7e-28  Score=215.33  Aligned_cols=200  Identities=16%  Similarity=0.194  Sum_probs=149.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-HHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-KSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~~~~~~  197 (328)
                      +|++|++|||||++|||+++|++|+++|++ |++++|+.+.  +..+++....++.++.++.+|++|. ++++++++++.
T Consensus         2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (254)
T 1sby_A            2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHH
Confidence            578999999999999999999999999997 9999998642  2234444444456899999999998 99999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----------ss~~~~~~~~~~~~y~a  266 (328)
                      +.++++|+||||||+.      +.++|++++++|+.|+++++++++|+|.++           ||+.+..+.++...|++
T Consensus        80 ~~~g~id~lv~~Ag~~------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~  153 (254)
T 1sby_A           80 DQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSA  153 (254)
T ss_dssp             HHHSCCCEEEECCCCC------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHH
T ss_pred             HhcCCCCEEEECCccC------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCCCchHHHH
Confidence            9999999999999974      467899999999999999999999999653           45555666677889999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHH-HHHHHHHH-HhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKL-SEEMIQSV-VSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++.+.|+...++.......+.. .+...... ...+++|+|+|.+++|
T Consensus       154 sK~a~~-~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~i~~  223 (254)
T 1sby_A          154 SKAAVV-SFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVK  223 (254)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            999998 66633       34556666677665543211000000 00010001 1245688998887653

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.94  E-value=2.9e-27  Score=206.85  Aligned_cols=189  Identities=20%  Similarity=0.197  Sum_probs=145.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+|++|||||++|||++++++|+++|++|++++|+.+.+++...++      .++.++.+|++|.++++++++++.+.++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVREEGDWARAVAAMEEAFG   77 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------hhceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999999987766654443      1578899999999999999999999999


Q ss_pred             CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccc
Q psy4246         202 SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       202 ~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      ++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|.|++.        ||+.+..+.++...|+++|+++
T Consensus        78 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~  157 (234)
T 2ehd_A           78 ELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGL  157 (234)
T ss_dssp             CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCCCCCchhhHHHHHH
Confidence            999999999985  445678999999999999999999999999999864        5555566667788999999998


Q ss_pred             cCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         272 SLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      + .++..       +..+++.+.|+...++..  ....   +.     . .+.+|+|+|.+++|
T Consensus       158 ~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--~~~~---~~-----~-~~~~~~dvA~~~~~  209 (234)
T 2ehd_A          158 L-GLAGAAMLDLREANVRVVNVLPGSVDTGFA--GNTP---GQ-----A-WKLKPEDVAQAVLF  209 (234)
T ss_dssp             H-HHHHHHHHHHGGGTEEEEEEECC---------------------------CCHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhhcCcEEEEEEeCCCcCCcc--cccc---cc-----c-CCCCHHHHHHHHHH
Confidence            8 65532       334566666766554422  1110   00     1 15688998887764

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.94  E-value=6.5e-27  Score=205.71  Aligned_cols=200  Identities=18%  Similarity=0.237  Sum_probs=150.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..+|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++    +  .+.++.+|++|.++++++++   
T Consensus         2 ~~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~~D~~~~~~~~~~~~---   72 (244)
T 1cyd_A            2 KLNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----P--GIEPVCVDLGDWDATEKALG---   72 (244)
T ss_dssp             -CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----T--TCEEEECCTTCHHHHHHHHT---
T ss_pred             ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----c--CCCcEEecCCCHHHHHHHHH---
Confidence            35689999999999999999999999999999999999987766544332    2  34567999999999888876   


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                       .++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|.|.++         ||..+..+.++...|++
T Consensus        73 -~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~  151 (244)
T 1cyd_A           73 -GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSS  151 (244)
T ss_dssp             -TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHH
T ss_pred             -HcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCCCcchhHH
Confidence             568999999999985  345678899999999999999999999999998753         45555556677889999


Q ss_pred             cCccccCCCCcc-------ccccCccCCCCcccCCHHHHHH-HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++++ .++..       +..+++...|+...++...... .....+.+.+ .+++|+..|+|+|.+++|
T Consensus       152 sK~a~~-~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  221 (244)
T 1cyd_A          152 TKGAMT-MLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILF  221 (244)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcCCccCCCCHHHHHHHHHH
Confidence            999998 66633       2344555566655544321110 0111122222 236899999999988764

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.94  E-value=1.6e-28  Score=222.66  Aligned_cols=211  Identities=14%  Similarity=0.100  Sum_probs=148.3

Q ss_pred             cCCCCCCceEEEcCCC--CCccHHHHHHHHHCCCeEEEeeCChhHH------H-HHHHHHHhhCCCC---eEEEEEcc--
Q psy4246         117 HGRDLSNYNAIVTGAN--TGIGFETARSLALHGCRVILACRSLDKA------N-DAISKILTEKPSA---QCIAMELN--  182 (328)
Q Consensus       117 ~~~~l~~k~~lITGas--~GIG~a~a~~la~~Ga~Vi~~~r~~~~~------~-~~~~~l~~~~~~~---~~~~~~~D--  182 (328)
                      +.++|+||++|||||+  +|||+++|++|+++|++|++++|+....      . +..+++.....+.   ....+.+|  
T Consensus         2 ~~~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
T 1d7o_A            2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV   81 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred             CccccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhcccccccccccccccee
Confidence            3457899999999999  9999999999999999999998763211      0 0001111000011   12333333  


Q ss_pred             ------c----CC--------HHHHHHHHHHHHHhcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHH
Q psy4246         183 ------L----CR--------LKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTL  240 (328)
Q Consensus       183 ------l----s~--------~~~v~~~~~~~~~~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~  240 (328)
                            +    +|        +++++++++++.+++|+||+||||||+.    .++.+.+.++|++++++|+.|++++++
T Consensus        82 ~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~  161 (297)
T 1d7o_A           82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS  161 (297)
T ss_dssp             CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHH
Confidence                  2    22        6789999999999999999999999973    455788999999999999999999999


Q ss_pred             HHHHHHHhc------cccceecccccc-hhhhccCccccCCCCcc--------ccccCccCCCCcccCCHHHHH-HHHHH
Q psy4246         241 QLENALIKG------AKLFARQQGAAT-SIYCATSLDLSLPVSGS--------YFNNCCRCPPSKAAQDEALAT-KLWKL  304 (328)
Q Consensus       241 ~~~~~~~~~------ss~~~~~~~~~~-~~y~ask~al~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~  304 (328)
                      +++|+|++.      ||+.+..+.++. ..|+++|++++ +++..        +..+++.+.|+...++..... ...+.
T Consensus       162 ~~~~~m~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~-~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~  240 (297)
T 1d7o_A          162 HFLPIMNPGGASISLTYIASERIIPGYGGGMSSAKAALE-SDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTM  240 (297)
T ss_dssp             HHGGGEEEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHH-HHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCSHHHHH
T ss_pred             HHHHHhccCceEEEEeccccccCCCCcchHHHHHHHHHH-HHHHHHHHHhCcccCcEEEEEeccccccchhhhccccHHH
Confidence            999999765      454555566666 68999999998 76632        456677777776655431100 00111


Q ss_pred             HHHHHH-HHHhcccccccccccccC
Q psy4246         305 SEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       305 ~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      .+.... .+++|+++|+|+|.+++|
T Consensus       241 ~~~~~~~~p~~r~~~pedvA~~v~~  265 (297)
T 1d7o_A          241 IEYSYNNAPIQKTLTADEVGNAAAF  265 (297)
T ss_dssp             HHHHHHHSSSCCCBCHHHHHHHHHH
T ss_pred             HHHhhccCCCCCCCCHHHHHHHHHH
Confidence            112222 247899999999998875

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.94  E-value=3.4e-28  Score=214.47  Aligned_cols=196  Identities=16%  Similarity=0.135  Sum_probs=131.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |+|+||++|||||++|||+++|++|++ |++|++++|+.+.+++..+       ..++.++.+|+++..+ .+.+.++.+
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~-------~~~~~~~~~D~~~~~~-~~~~~~~~~   71 (245)
T 3e9n_A            1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE-------IEGVEPIESDIVKEVL-EEGGVDKLK   71 (245)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT-------STTEEEEECCHHHHHH-TSSSCGGGT
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh-------hcCCcceecccchHHH-HHHHHHHHH
Confidence            357899999999999999999999988 9999999999877655432       1358889999998877 445555567


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~  269 (328)
                      .++++|+||||||+.  .++.+.+.++|++++++|+.|+++++++++|.|++.       ||..+..+.++...|+++|+
T Consensus        72 ~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  151 (245)
T 3e9n_A           72 NLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGPHPGNTIYAASKH  151 (245)
T ss_dssp             TCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC----------CHHHHHHHH
T ss_pred             hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccCCCCchHHHHHHH
Confidence            789999999999985  445678899999999999999999999999999874       66667777788999999999


Q ss_pred             cccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         270 DLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +++ .++..       +..+++.+.|+...++.  .........  .....+|+.+|+|+|.+++|
T Consensus       152 a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~--~~~~~~~~~--~~~~~~~~~~p~dvA~~i~~  212 (245)
T 3e9n_A          152 ALR-GLADAFRKEEANNGIRVSTVSPGPTNTPM--LQGLMDSQG--TNFRPEIYIEPKEIANAIRF  212 (245)
T ss_dssp             HHH-HHHHHHHHHHGGGTCEEEEEEECCC--------------------CCGGGSCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhhhcCeEEEEEecCCccCch--hhhhhhhhh--cccccccCCCHHHHHHHHHH
Confidence            998 76633       34556666666655542  222211111  11136789999999998865

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.94  E-value=2.3e-27  Score=209.83  Aligned_cols=191  Identities=16%  Similarity=0.162  Sum_probs=145.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+++||++|||||++|||+++|++|+++|++|++++|+.+.++    ++     + ++.++ +|+  .++++++++++  
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----~~-----~-~~~~~-~D~--~~~~~~~~~~~--   79 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RS-----G-HRYVV-CDL--RKDLDLLFEKV--   79 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HT-----C-SEEEE-CCT--TTCHHHHHHHS--
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH----hh-----C-CeEEE-eeH--HHHHHHHHHHh--
Confidence            4689999999999999999999999999999999999873322    22     2 56677 999  55677777655  


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                        .++|+||||||+.  .++.+.+.++|++++++|+.|++++++.++|+|++.        ||+.+..+.++...|+++|
T Consensus        80 --~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  157 (249)
T 1o5i_A           80 --KEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSAR  157 (249)
T ss_dssp             --CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred             --cCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCCCCCchHHHHH
Confidence              3899999999985  345688999999999999999999999999999765        6666666777889999999


Q ss_pred             ccccCCCCc-------cccccCccCCCCcccCCHHHHHHHHHHHH-HHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG-------SYFNNCCRCPPSKAAQDEALATKLWKLSE-EMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++.       .+..+++.+.|+...++..... .....+ .... .+++|+++|+|+|.+++|
T Consensus       158 ~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~  224 (249)
T 1o5i_A          158 MALT-GFLKTLSFEVAPYGITVNCVAPGWTETERVKEL-LSEEKKKQVESQIPMRRMAKPEEIASVVAF  224 (249)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHH-SCHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhhcCeEEEEEeeCCCccCccccc-chhhHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9998 6663       2445667777777766643210 001111 1111 237899999999998865

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.93  E-value=2e-27  Score=210.45  Aligned_cols=185  Identities=13%  Similarity=0.080  Sum_probs=148.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..+|++|||||++|||+++|++|+++|++|++++|+.++..              ...+.+|++|.++++++++++.+.+
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~d~~d~~~v~~~~~~~~~~~   85 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA--------------DHSFTIKDSGEEEIKSVIEKINSKS   85 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS--------------SEEEECSCSSHHHHHHHHHHHHTTT
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc--------------ccceEEEeCCHHHHHHHHHHHHHHc
Confidence            44799999999999999999999999999999999875421              1357899999999999999999999


Q ss_pred             CCccEEEEccccCC---CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCccc
Q psy4246         201 RSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       201 g~id~lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      +++|+||||||+..   +..+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...|+++|+++
T Consensus        86 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~  165 (251)
T 3orf_A           86 IKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTSGMIAYGATKAAT  165 (251)
T ss_dssp             CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHH
T ss_pred             CCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCCCCchhHHHHHHH
Confidence            99999999999853   25677889999999999999999999999999765      6667777888899999999998


Q ss_pred             cCCCCc---------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         272 SLPVSG---------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       272 ~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      + .++.         .+..+++.+.|+...++  +....      .....++|+++|+|+|.+++|
T Consensus       166 ~-~~~~~la~e~~~~~~gi~v~~v~PG~v~t~--~~~~~------~~~~~~~~~~~~~dva~~i~~  222 (251)
T 3orf_A          166 H-HIIKDLASENGGLPAGSTSLGILPVTLDTP--TNRKY------MSDANFDDWTPLSEVAEKLFE  222 (251)
T ss_dssp             H-HHHHHHTSTTSSSCTTCEEEEEEESCBCCH--HHHHH------CTTSCGGGSBCHHHHHHHHHH
T ss_pred             H-HHHHHHHHHhcccCCCcEEEEEecCcCcCc--chhhh------cccccccccCCHHHHHHHHHH
Confidence            8 5552         23344555556655443  22211      111237899999999998765

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.93  E-value=1.1e-27  Score=210.71  Aligned_cols=188  Identities=9%  Similarity=0.027  Sum_probs=146.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+++|++|||||++|||+++|++|+++|++|++++|+.+...            ....++.+|++|+++++++++++.+.
T Consensus         4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v~~~~~~~~~~   71 (241)
T 1dhr_A            4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKL   71 (241)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999875421            24577899999999999999999999


Q ss_pred             c--CCccEEEEccccC--CCC-CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccC
Q psy4246         200 F--RSLNILVLNAGVF--GLG-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       200 ~--g~id~lvnnAg~~--~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask  268 (328)
                      +  +++|+||||||+.  .++ .+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...|+++|
T Consensus        72 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  151 (241)
T 1dhr_A           72 LGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAK  151 (241)
T ss_dssp             HTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHH
T ss_pred             hCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCCCchHHHHHH
Confidence            9  7999999999985  344 677889999999999999999999999999764      6666667778889999999


Q ss_pred             ccccCCCCc---------cccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG---------SYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++++ .++.         .+..+++.+.|+...++.  ......      ...+.++..|+|+|.+++|
T Consensus       152 ~a~~-~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~--~~~~~~------~~~~~~~~~~~~vA~~v~~  211 (241)
T 1dhr_A          152 GAVH-QLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM--NRKSMP------EADFSSWTPLEFLVETFHD  211 (241)
T ss_dssp             HHHH-HHHHHHTSTTSSCCTTCEEEEEEESCEECHH--HHHHST------TSCGGGSEEHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhccCCCCeEEEEEecCcccCcc--ccccCc------chhhccCCCHHHHHHHHHH
Confidence            9998 6552         233555666676665543  221100      0013456677888877654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.93  E-value=2e-27  Score=208.40  Aligned_cols=186  Identities=12%  Similarity=0.066  Sum_probs=146.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|++|||||++|||+++|++|+++|++|++++|+.+..+            ....++.+|++|.++++++++++.+.+
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~   68 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSL   68 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999875421            245678999999999999999999999


Q ss_pred             --CCccEEEEccccC--CCC-CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCc
Q psy4246         201 --RSLNILVLNAGVF--GLG-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       201 --g~id~lvnnAg~~--~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~  269 (328)
                        +++|+||||||+.  .++ .+.+.++|++++++|+.|+++++++++|+|++.      ||+.+..+.++...|+++|+
T Consensus        69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  148 (236)
T 1ooe_A           69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKA  148 (236)
T ss_dssp             TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHH
T ss_pred             CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCCCCcHHHHHHHH
Confidence              7999999999985  344 577889999999999999999999999999764      66666677788899999999


Q ss_pred             cccCCCCcc---------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q psy4246         270 DLSLPVSGS---------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVV  327 (328)
Q Consensus       270 al~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~  327 (328)
                      +++ .++..         +..+++.+.|+...++.  ......      .....++..|+|+|.+++
T Consensus       149 a~~-~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~--~~~~~~------~~~~~~~~~~~dvA~~i~  206 (236)
T 1ooe_A          149 AVH-HLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM--NRKWMP------NADHSSWTPLSFISEHLL  206 (236)
T ss_dssp             HHH-HHHHHHHSTTSSCCTTCEEEEEEESCBCCHH--HHHHST------TCCGGGCBCHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhcccCCCeEEEEEecCcccCcc--hhhcCC------CccccccCCHHHHHHHHH
Confidence            998 65532         23455556666554432  221110      011356778888888765

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.93  E-value=4.6e-26  Score=200.46  Aligned_cols=169  Identities=20%  Similarity=0.205  Sum_probs=135.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |++|++|||||++|||++++++|+++|  ++|++++|+.+.++++.+    . .+.++.++.+|++|.++++++++++.+
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~----~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   75 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS----I-KDSRVHVLPLTVTCDKSLDTFVSKVGE   75 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT----C-CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh----c-cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999  999999999877654321    1 256889999999999999999999999


Q ss_pred             hcC--CccEEEEccccCC---CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------------------cccce
Q psy4246         199 KFR--SLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------------------AKLFA  254 (328)
Q Consensus       199 ~~g--~id~lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------------------ss~~~  254 (328)
                      .+|  ++|+||||||+..   ++.+.+.++|++++++|+.|+++++++++|+|.+.                   ||..+
T Consensus        76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~  155 (250)
T 1yo6_A           76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG  155 (250)
T ss_dssp             HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred             hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcc
Confidence            998  9999999999853   45678899999999999999999999999998643                   33333


Q ss_pred             eccc-------ccchhhhccCccccCCCCcc-------ccccCccCCCCcccCCH
Q psy4246         255 RQQG-------AATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDE  295 (328)
Q Consensus       255 ~~~~-------~~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~  295 (328)
                      ..+.       ++...|+++|++++ .++..       +..+++.+.|+...++.
T Consensus       156 ~~~~~~~~~~~~~~~~Y~~sK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  209 (250)
T 1yo6_A          156 SITDNTSGSAQFPVLAYRMSKAAIN-MFGRTLAVDLKDDNVLVVNFCPGWVQTNL  209 (250)
T ss_dssp             CSTTCCSTTSSSCBHHHHHHHHHHH-HHHHHHHHHTGGGTCEEEEEECCCC----
T ss_pred             ccCCcccccccCCccHHHHHHHHHH-HHHHHHHHHhccCCeEEEEEcCCceecCC
Confidence            3333       46788999999998 66532       23455556676655543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.93  E-value=5.5e-25  Score=198.33  Aligned_cols=173  Identities=23%  Similarity=0.240  Sum_probs=144.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +++||++|||||+||||+++|+.|+++|++|++++|+.+.+++...++.... +.++.++.+|++|.++++++++++.+.
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKL  103 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999988888777776542 347899999999999999999999999


Q ss_pred             cCCccEEEEc-cccC-CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCcc
Q psy4246         200 FRSLNILVLN-AGVF-GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       200 ~g~id~lvnn-Ag~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      +|++|+|||| ||+. .+..+.+.+++++++++|+.|+++++++++|+|.+.       ||+.+..+.++...|+++|++
T Consensus       104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  183 (286)
T 1xu9_A          104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFA  183 (286)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTTCHHHHHHHHH
T ss_pred             cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCCCCccHHHHHHHH
Confidence            9999999999 5764 334567899999999999999999999999998764       666666777788999999999


Q ss_pred             ccCCCCccc---------cccCccCCCCcccCC
Q psy4246         271 LSLPVSGSY---------FNNCCRCPPSKAAQD  294 (328)
Q Consensus       271 l~~~~~g~~---------~~~~~~~~~~~~~~~  294 (328)
                      ++ .++..+         ..+++.+.|+...++
T Consensus       184 ~~-~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~  215 (286)
T 1xu9_A          184 LD-GFFSSIRKEYSVSRVNVSITLCVLGLIDTE  215 (286)
T ss_dssp             HH-HHHHHHHHHHHHHTCCCEEEEEEECCBCCH
T ss_pred             HH-HHHHHHHHHHhhcCCCeEEEEeecCccCCh
Confidence            98 665322         233444556665544

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.92  E-value=3.2e-26  Score=204.28  Aligned_cols=190  Identities=21%  Similarity=0.238  Sum_probs=148.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHH-CCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLAL-HGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~-~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .++|++|||||++|||+++|+.|++ +|++|++++|+.+.+++..+++...  +.++.++.+|++|.++++++++++.+.
T Consensus         2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999999999 9999999999988888877777654  457889999999999999999999999


Q ss_pred             cCCccEEEEccccCCC-CCCCC-hhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecc--------------
Q psy4246         200 FRSLNILVLNAGVFGL-GFSHT-EDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQ--------------  257 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~-~~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~--------------  257 (328)
                      ++++|+||||||+... ....+ .+++++++++|+.|+++++++++|+|++.      ||..+..+              
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~  159 (276)
T 1wma_A           80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS  159 (276)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred             cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccc
Confidence            9999999999998632 23334 58899999999999999999999998764      44333211              


Q ss_pred             ---------------------------cccchhhhccCccccCCCCcc-----------ccccCccCCCCcccCCHHHHH
Q psy4246         258 ---------------------------GAATSIYCATSLDLSLPVSGS-----------YFNNCCRCPPSKAAQDEALAT  299 (328)
Q Consensus       258 ---------------------------~~~~~~y~ask~al~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~  299 (328)
                                                 +.....|+++|++++ .++..           ...+++.+.|+...++.... 
T Consensus       160 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~-~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~-  237 (276)
T 1wma_A          160 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVT-VLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP-  237 (276)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHH-HHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT-
T ss_pred             cccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHH-HHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc-
Confidence                                       012378999999988 65532           23456666677665543210 


Q ss_pred             HHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         300 KLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       300 ~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                                    .++.+|+|+|..++|
T Consensus       238 --------------~~~~~~~~~a~~~~~  252 (276)
T 1wma_A          238 --------------KATKSPEEGAETPVY  252 (276)
T ss_dssp             --------------TCSBCHHHHTHHHHH
T ss_pred             --------------cccCChhHhhhhHhh
Confidence                          356777777776653

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.92  E-value=1.4e-25  Score=199.95  Aligned_cols=172  Identities=19%  Similarity=0.278  Sum_probs=137.1

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCC---CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHG---CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~G---a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .++++|++|||||++|||+++|++|+++|   ++|++++|+.+.++.+ .++...  +.++.++.+|++|.+++++++++
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~   93 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKN--HSNIHILEIDLRNFDAYDKLVAD   93 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHH--CTTEEEEECCTTCGGGHHHHHHH
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhcc--CCceEEEEecCCChHHHHHHHHH
Confidence            46889999999999999999999999999   9999999997765533 444443  45789999999999999999999


Q ss_pred             HHHhcC--CccEEEEccccCC---CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------------------cc
Q psy4246         196 YQKKFR--SLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------------------AK  251 (328)
Q Consensus       196 ~~~~~g--~id~lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------------------ss  251 (328)
                      +.+.++  ++|+||||||+..   ++.+.+.++|++++++|+.|+++++++++|+|.+.                   ||
T Consensus        94 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS  173 (267)
T 1sny_A           94 IEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS  173 (267)
T ss_dssp             HHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECC
T ss_pred             HHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEec
Confidence            999998  8999999999853   45678899999999999999999999999998753                   33


Q ss_pred             cceeccc---ccchhhhccCccccCCCCcc-------ccccCccCCCCcccCC
Q psy4246         252 LFARQQG---AATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQD  294 (328)
Q Consensus       252 ~~~~~~~---~~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~  294 (328)
                      +.+..+.   .+...|+++|++++ .++..       +..+++.+.|+...++
T Consensus       174 ~~~~~~~~~~~~~~~Y~~sK~a~~-~~~~~la~e~~~~gi~v~~v~Pg~v~t~  225 (267)
T 1sny_A          174 ILGSIQGNTDGGMYAYRTSKSALN-AATKSLSVDLYPQRIMCVSLHPGWVKTD  225 (267)
T ss_dssp             GGGCSTTCCSCCCHHHHHHHHHHH-HHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred             ccccccCCCCCCchHHHHHHHHHH-HHHHHHHHHhhcCCcEEEEeCCcceecC
Confidence            3333332   25678999999998 66532       3455666667666544

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.91  E-value=1e-25  Score=197.52  Aligned_cols=188  Identities=18%  Similarity=0.151  Sum_probs=142.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||++|||++++++|+++|++|++++|+.+ .             .++.++.+|++|+++++++++++ +.+++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-------------~~~~~~~~D~~~~~~~~~~~~~~-~~~~~   66 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-------------EDLIYVEGDVTREEDVRRAVARA-QEEAP   66 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-------------SSSEEEECCTTCHHHHHHHHHHH-HHHSC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-------------cceEEEeCCCCCHHHHHHHHHHH-HhhCC
Confidence            689999999999999999999999999999999864 1             13578999999999999999999 88899


Q ss_pred             ccEEEEccccCC--CCCCCC----hhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cccceecccccch
Q psy4246         203 LNILVLNAGVFG--LGFSHT----EDGFETTFQVNHLAHFYLTLQLENALIKG--------------AKLFARQQGAATS  262 (328)
Q Consensus       203 id~lvnnAg~~~--~~~~~~----~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss~~~~~~~~~~~  262 (328)
                      +|+||||||+..  +..+.+    .++|++++++|+.++++++++++|.|.+.              ||+.+..+.++..
T Consensus        67 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~  146 (242)
T 1uay_A           67 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQA  146 (242)
T ss_dssp             EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCH
T ss_pred             ceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCc
Confidence            999999999852  333443    44999999999999999999999999763              3334455566788


Q ss_pred             hhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHH-HHHHHHH-HH-hcccccccccccccC
Q psy4246         263 IYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKL-SEEMIQS-VV-STWLEETTERGEVVF  328 (328)
Q Consensus       263 ~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-~r~g~p~dia~~v~F  328 (328)
                      .|+++|++++ .++..       +..+++.+.|+...++..  ...... .+..... ++ +|+++|+|+|.+++|
T Consensus       147 ~Y~~sK~a~~-~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  219 (242)
T 1uay_A          147 AYAASKGGVV-ALTLPAARELAGWGIRVVTVAPGLFDTPLL--QGLPEKAKASLAAQVPFPPRLGRPEEYAALVLH  219 (242)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSCSSHHH--HTSCHHHHHHHHTTCCSSCSCCCHHHHHHHHHH
T ss_pred             hhhHHHHHHH-HHHHHHHHHHhhcCcEEEEEEeccCcchhh--hccchhHHHHHHhhCCCcccCCCHHHHHHHHHH
Confidence            9999999998 65532       234556666666554432  111111 1111111 25 889999999998764

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7e-26  Score=234.18  Aligned_cols=204  Identities=14%  Similarity=0.131  Sum_probs=155.3

Q ss_pred             CCCCCCceEEEcCCCCC-ccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCC--CCeEEEEEcccCCHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTG-IGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKP--SAQCIAMELNLCRLKSVKKFA  193 (328)
Q Consensus       118 ~~~l~~k~~lITGas~G-IG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~  193 (328)
                      .++|+||++|||||++| ||+++|+.|+++|++|+++ +|+.+.+++..+++.....  +.++.++.||++|.+++++++
T Consensus       471 ~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLV  550 (1688)
T 2pff_A          471 XVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI  550 (1688)
T ss_dssp             CCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHH
T ss_pred             ccccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHH
Confidence            45789999999999998 9999999999999999998 5777666666666644322  568999999999999999999


Q ss_pred             HHHHHh-----cC-CccEEEEccccC--C-CCCCCC--hhHHHHHHhhhhHHHHHHHHHH--HHHHHhc--------ccc
Q psy4246         194 EEYQKK-----FR-SLNILVLNAGVF--G-LGFSHT--EDGFETTFQVNHLAHFYLTLQL--ENALIKG--------AKL  252 (328)
Q Consensus       194 ~~~~~~-----~g-~id~lvnnAg~~--~-~~~~~~--~~~~~~~~~vN~~g~~~l~~~~--~~~~~~~--------ss~  252 (328)
                      +++.+.     +| +||+||||||+.  + ++.+.+  .++|+++|++|+.|++++++++  +|.|+++        ||+
T Consensus       551 e~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSi  630 (1688)
T 2pff_A          551 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPN  630 (1688)
T ss_dssp             HHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSC
T ss_pred             HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEECh
Confidence            999988     77 999999999985  3 567777  8999999999999999999999  7887654        444


Q ss_pred             ceecccccchhhhccCccccCCC-C-------ccccccCccCCCCccc-CCHHHHHHHHHHHHHHHHHHHhccccccccc
Q psy4246         253 FARQQGAATSIYCATSLDLSLPV-S-------GSYFNNCCRCPPSKAA-QDEALATKLWKLSEEMIQSVVSTWLEETTER  323 (328)
Q Consensus       253 ~~~~~~~~~~~y~ask~al~~~~-~-------g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia  323 (328)
                      .+..+  +...|+++|+++. ++ +       +.+ .+++.+.|+... ++.....   +...+......-|.++|+|+|
T Consensus       631 AG~~G--g~saYaASKAAL~-aLttrsLAeEla~~-IRVNaVaPG~V~TT~M~~~~---e~~~~~l~~iplR~~sPEEVA  703 (1688)
T 2pff_A          631 HGTFG--GDGMYSESKLSLE-TLFNRWHSESWANQ-LTVCGAIIGWTRGTGLMSAN---NIIAEGIEKMGVRTFSQKEMA  703 (1688)
T ss_dssp             TTTSS--CBTTHHHHHHHHT-HHHHHTTTSSCTTT-EECCCCCCCCCCCCSSSCTT---TTCSTTTSSSSCCCCCCCTTH
T ss_pred             HhccC--CchHHHHHHHHHH-HHHHHHHHHHcCCC-eEEEEEEECcCcCCcccCCc---hHHHHHHHhCCCCCCCHHHHH
Confidence            44444  5789999999999 76 2       223 667777787766 3321000   000001111111677999999


Q ss_pred             ccccC
Q psy4246         324 GEVVF  328 (328)
Q Consensus       324 ~~v~F  328 (328)
                      .+++|
T Consensus       704 ~aIlF  708 (1688)
T 2pff_A          704 FNLLG  708 (1688)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.91  E-value=2.7e-25  Score=236.57  Aligned_cols=204  Identities=15%  Similarity=0.143  Sum_probs=156.1

Q ss_pred             CCCCCCceEEEcCCCCC-ccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCC--CCeEEEEEcccCCHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTG-IGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKP--SAQCIAMELNLCRLKSVKKFA  193 (328)
Q Consensus       118 ~~~l~~k~~lITGas~G-IG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~  193 (328)
                      .++|+||++|||||++| ||+++|+.|+++|++|+++ +|+.+.+++..+++.....  +.++.++.||++|.+++++++
T Consensus       670 ~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv  749 (1887)
T 2uv8_A          670 GVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI  749 (1887)
T ss_dssp             CBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence            45789999999999998 9999999999999999998 5777777776666644321  568999999999999999999


Q ss_pred             HHHHHh-----cC-CccEEEEccccC--C-CCCCCC--hhHHHHHHhhhhHHHHHHHHHH--HHHHHhc--------ccc
Q psy4246         194 EEYQKK-----FR-SLNILVLNAGVF--G-LGFSHT--EDGFETTFQVNHLAHFYLTLQL--ENALIKG--------AKL  252 (328)
Q Consensus       194 ~~~~~~-----~g-~id~lvnnAg~~--~-~~~~~~--~~~~~~~~~vN~~g~~~l~~~~--~~~~~~~--------ss~  252 (328)
                      +.+.+.     +| +||+||||||+.  + ++.+++  .++|+++|++|+.|++++++.+  +|.|.++        ||+
T Consensus       750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~  829 (1887)
T 2uv8_A          750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPN  829 (1887)
T ss_dssp             HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSC
T ss_pred             HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcCh
Confidence            999988     66 999999999985  3 556777  8999999999999999999988  6777654        444


Q ss_pred             ceecccccchhhhccCccccCCC-C-------ccccccCccCCCCccc-CCHHHHHHHHHHHHHHHHHHHhccccccccc
Q psy4246         253 FARQQGAATSIYCATSLDLSLPV-S-------GSYFNNCCRCPPSKAA-QDEALATKLWKLSEEMIQSVVSTWLEETTER  323 (328)
Q Consensus       253 ~~~~~~~~~~~y~ask~al~~~~-~-------g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia  323 (328)
                      .+..+  +...|+++|+++. ++ +       +.+ ++++.+.|+... ++.....   +...........|+++|+|||
T Consensus       830 ag~~g--g~~aYaASKAAL~-~Lttr~lA~ela~~-IrVNaV~PG~V~tT~m~~~~---~~~~~~~~~~plr~~sPEEVA  902 (1887)
T 2uv8_A          830 HGTFG--GDGMYSESKLSLE-TLFNRWHSESWANQ-LTVCGAIIGWTRGTGLMSAN---NIIAEGIEKMGVRTFSQKEMA  902 (1887)
T ss_dssp             TTCSS--CBTTHHHHHHHGG-GHHHHHHHSSCTTT-EEEEEEEECCEECC-----C---CTTHHHHHTTSCCCEEHHHHH
T ss_pred             HhccC--CCchHHHHHHHHH-HHHHHHHHHHhCCC-eEEEEEEecccccccccccc---hhHHHHHHhcCCCCCCHHHHH
Confidence            44444  6789999999999 76 3       233 667777787776 4321110   000111111112788999999


Q ss_pred             ccccC
Q psy4246         324 GEVVF  328 (328)
Q Consensus       324 ~~v~F  328 (328)
                      .+++|
T Consensus       903 ~avlf  907 (1887)
T 2uv8_A          903 FNLLG  907 (1887)
T ss_dssp             HHHHG
T ss_pred             HHHHH
Confidence            98876

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.91  E-value=7.7e-25  Score=232.67  Aligned_cols=205  Identities=17%  Similarity=0.148  Sum_probs=155.6

Q ss_pred             cCCCCCCceEEEcCCCCC-ccHHHHHHHHHCCCeEEEee-CChhHHHHHHHHHHhhC--CCCeEEEEEcccCCHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTG-IGFETARSLALHGCRVILAC-RSLDKANDAISKILTEK--PSAQCIAMELNLCRLKSVKKF  192 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~G-IG~a~a~~la~~Ga~Vi~~~-r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~  192 (328)
                      +.++|+||++|||||++| ||+++|+.|+++|++|++++ |+.+.+.+..+++....  .+.++.++.||++|.++++++
T Consensus       646 ~~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~al  725 (1878)
T 2uv9_A          646 SGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEAL  725 (1878)
T ss_dssp             HCBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHH
T ss_pred             cCCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHH
Confidence            355789999999999999 99999999999999999995 66666666665554332  156899999999999999999


Q ss_pred             HHHHHHh---cC-CccEEEEccccC--C-CCCCCC--hhHHHHHHhhhhHHHHHHHHH--HHHHHHhc--------cccc
Q psy4246         193 AEEYQKK---FR-SLNILVLNAGVF--G-LGFSHT--EDGFETTFQVNHLAHFYLTLQ--LENALIKG--------AKLF  253 (328)
Q Consensus       193 ~~~~~~~---~g-~id~lvnnAg~~--~-~~~~~~--~~~~~~~~~vN~~g~~~l~~~--~~~~~~~~--------ss~~  253 (328)
                      ++++.+.   +| +||+||||||+.  + ++.+++  .++|+++|++|+.|++++++.  ++|.|.++        ||+.
T Consensus       726 v~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~a  805 (1878)
T 2uv9_A          726 VNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNH  805 (1878)
T ss_dssp             HHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCS
T ss_pred             HHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchh
Confidence            9999998   99 999999999985  3 567888  899999999999999999987  67777654        4555


Q ss_pred             eecccccchhhhccCccccCCCCc--------cccccCccCCCCccc-CCHHHHHHHHHHHHHHHHHHHhcccccccccc
Q psy4246         254 ARQQGAATSIYCATSLDLSLPVSG--------SYFNNCCRCPPSKAA-QDEALATKLWKLSEEMIQSVVSTWLEETTERG  324 (328)
Q Consensus       254 ~~~~~~~~~~y~ask~al~~~~~g--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~  324 (328)
                      +..+  +...|+++|+++. +++.        .+ .+++.+.|+... ++.....   +..........-|.++|+|+|.
T Consensus       806 g~~g--g~~aYaASKAAL~-aLt~~laAeEla~~-IrVNaVaPG~V~gT~m~~~~---~~~~~~~~~~plr~~sPeEVA~  878 (1878)
T 2uv9_A          806 GTFG--NDGLYSESKLALE-TLFNRWYSESWGNY-LTICGAVIGWTRGTGLMSAN---NLVAEGVEKLGVRTFSQQEMAF  878 (1878)
T ss_dssp             SSSS--CCSSHHHHHHHHT-THHHHHHHSTTTTT-EEEEEEEECCBCCTTSCSHH---HHTHHHHHTTTCCCBCHHHHHH
T ss_pred             hccC--CchHHHHHHHHHH-HHHHHHHHHHcCCC-eEEEEEEecceecCcccccc---hhhHHHHHhcCCCCCCHHHHHH
Confidence            4444  4678999999999 7642        23 566777777665 4421111   1111111111117779999999


Q ss_pred             cccC
Q psy4246         325 EVVF  328 (328)
Q Consensus       325 ~v~F  328 (328)
                      +++|
T Consensus       879 avlf  882 (1878)
T 2uv9_A          879 NLLG  882 (1878)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=99.91  E-value=1.6e-24  Score=159.38  Aligned_cols=81  Identities=38%  Similarity=0.728  Sum_probs=73.2

Q ss_pred             CCCCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCCcccc---ccCCCCCCCeeeeeCCCcEEEEeccCcccccC
Q psy4246           9 PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKK---VSGDLPLGWEKSVSEDGKITFYNKDTHVKTYT   85 (328)
Q Consensus         9 ~~~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~---~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~   85 (328)
                      .+.+...+||+|||++++++||+|||||+||+|+|++|+......   ...+||.||++..+.+|++||+||.++.++|+
T Consensus         5 ~~~~~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~   84 (88)
T 1tk7_A            5 FHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFE   84 (88)
T ss_dssp             SCSSTTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESS
T ss_pred             cCCCccCCCCCCcEEEECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECCCCCEEEEECCCCcEeCC
Confidence            456777889999999999999999999999999999999875542   35689999999999999999999999999999


Q ss_pred             CCcc
Q psy4246          86 DPRI   89 (328)
Q Consensus        86 ~P~~   89 (328)
                      +||+
T Consensus        85 ~Prl   88 (88)
T 1tk7_A           85 DPRP   88 (88)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            9985

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.91  E-value=4.1e-25  Score=214.81  Aligned_cols=169  Identities=17%  Similarity=0.146  Sum_probs=140.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCe-EEEe-eCCh-------------hHHHHHHHHHHhhCCCCeEEEEEcccCCH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCR-VILA-CRSL-------------DKANDAISKILTEKPSAQCIAMELNLCRL  186 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~-~r~~-------------~~~~~~~~~l~~~~~~~~~~~~~~Dls~~  186 (328)
                      .+|++|||||++|||+++|+.|+++|++ |+++ +|+.             +.++++..++...  +.++.++.||++|.
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dvtd~  327 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL--GATATVVTCDLTDA  327 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHH--TCEEEEEECCTTSH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhc--CCEEEEEECCCCCH
Confidence            6899999999999999999999999997 7777 8883             4456667777665  67999999999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------ccccee
Q psy4246         187 KSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFAR  255 (328)
Q Consensus       187 ~~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~  255 (328)
                      ++++++++++. ++++||+||||||+.  +++.+.+.++|+++|++|+.|+++|.+++.+.|+++         ||+.+.
T Consensus       328 ~~v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~  406 (525)
T 3qp9_A          328 EAAARLLAGVS-DAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAI  406 (525)
T ss_dssp             HHHHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGT
T ss_pred             HHHHHHHHHHH-hcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHc
Confidence            99999999998 799999999999986  556789999999999999999999999999998542         778888


Q ss_pred             cccccchhhhccCccccCCCCcc---ccccCccCCCCcccCC
Q psy4246         256 QQGAATSIYCATSLDLSLPVSGS---YFNNCCRCPPSKAAQD  294 (328)
Q Consensus       256 ~~~~~~~~y~ask~al~~~~~g~---~~~~~~~~~~~~~~~~  294 (328)
                      .+.++...|+++|+++. .+...   +..+++.+.|+++.+.
T Consensus       407 ~g~~g~~~YaaaKa~l~-~lA~~~~~~gi~v~sI~pG~~~tg  447 (525)
T 3qp9_A          407 WGGAGQGAYAAGTAFLD-ALAGQHRADGPTVTSVAWSPWEGS  447 (525)
T ss_dssp             TCCTTCHHHHHHHHHHH-HHHTSCCSSCCEEEEEEECCBTTS
T ss_pred             CCCCCCHHHHHHHHHHH-HHHHHHHhCCCCEEEEECCccccc
Confidence            88999999999999998 65532   3344555666666444

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=99.90  E-value=5e-24  Score=157.44  Aligned_cols=80  Identities=33%  Similarity=0.690  Sum_probs=71.4

Q ss_pred             CCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCCcc-----ccccCCCCCCCeeeeeCCCcEEEEeccCcccccC
Q psy4246          11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVK-----KKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYT   85 (328)
Q Consensus        11 ~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~-----~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~   85 (328)
                      .++..+||+|||++++++||+|||||+||+|+|++|+....     .....+||.||++.++.+|++||+||.++.++|+
T Consensus         4 ~~~~~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~   83 (90)
T 2kxq_A            4 GGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFT   83 (90)
T ss_dssp             CSSCCSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESS
T ss_pred             CCCCCCCCCCcEEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCCCcEecC
Confidence            34557899999999999999999999999999999997642     3345689999999999999999999999999999


Q ss_pred             CCccc
Q psy4246          86 DPRIV   90 (328)
Q Consensus        86 ~P~~~   90 (328)
                      +|++.
T Consensus        84 ~Pr~~   88 (90)
T 2kxq_A           84 DPRLS   88 (90)
T ss_dssp             CTTTS
T ss_pred             CCCcC
Confidence            99864

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.90  E-value=1.5e-25  Score=198.59  Aligned_cols=181  Identities=16%  Similarity=0.096  Sum_probs=128.1

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||++|||+++|+.|+++|++|++++|+.++++.              . +.+|++|.++++++++++   +++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~--------------~-~~~Dl~~~~~v~~~~~~~---~~~i   63 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA--------------D-LSTAEGRKQAIADVLAKC---SKGM   63 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--------------C-TTSHHHHHHHHHHHHTTC---TTCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc--------------c-cccCCCCHHHHHHHHHHh---CCCC
Confidence            689999999999999999999999999999998654211              1 679999999988887633   3899


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee--------------------
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR--------------------  255 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~--------------------  255 (328)
                      |+||||||+....     +.|++++++|+.|+++++++++|+|+++        ||..+.                    
T Consensus        64 d~lv~~Ag~~~~~-----~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~  138 (257)
T 1fjh_A           64 DGLVLCAGLGPQT-----KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAK  138 (257)
T ss_dssp             SEEEECCCCCTTC-----SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHH
T ss_pred             CEEEECCCCCCCc-----ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhh
Confidence            9999999986421     3489999999999999999999999865        444444                    


Q ss_pred             --------cccccchhhhccCccccCCCCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHH---HHHhccc
Q psy4246         256 --------QQGAATSIYCATSLDLSLPVSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ---SVVSTWL  317 (328)
Q Consensus       256 --------~~~~~~~~y~ask~al~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~g  317 (328)
                              .+.++...|+++|++++ .++..       +..+++.+.|+...++............+...   .+++|++
T Consensus       139 ~~~~~~~~~~~~~~~~Y~~sK~a~~-~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (257)
T 1fjh_A          139 ARAIVEHAGEQGGNLAYAGSKNALT-VAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRA  217 (257)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHHHH-HHHHHTHHHHHHTTCEEEEEEECC---------------------CCCSTTSCC
T ss_pred             hhhhhhcccCCCCccHHHHHHHHHH-HHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhHHHHHHhcccccCCCC
Confidence                    23446789999999998 66633       33556666666655543211100011112221   2367999


Q ss_pred             ccccccccccC
Q psy4246         318 EETTERGEVVF  328 (328)
Q Consensus       318 ~p~dia~~v~F  328 (328)
                      +|+|+|.+++|
T Consensus       218 ~~~dvA~~~~~  228 (257)
T 1fjh_A          218 EPSEMASVIAF  228 (257)
T ss_dssp             CTHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999998865

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.88  E-value=7.1e-24  Score=215.23  Aligned_cols=169  Identities=17%  Similarity=0.167  Sum_probs=144.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHH-HCCC-eEEEeeCC---hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLA-LHGC-RVILACRS---LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la-~~Ga-~Vi~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      .+|++|||||++|||+++|+.|+ ++|+ +|++++|+   .+.+++..+++...  +.++.++.||++|.++++++++++
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--G~~v~~~~~Dvsd~~~v~~~~~~~  606 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAY--GAEVSLQACDVADRETLAKVLASI  606 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHH
Confidence            58999999999999999999999 7999 59999998   45567777777665  779999999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH--HhccccceecccccchhhhccCcccc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL--IKGAKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~--~~~ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      .+.+ +||+||||||+.  .++.+++.++|+++|++|+.|++++++++.|.|  ..-||+.+..+.+++..|+++|+.+.
T Consensus       607 ~~~~-~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l~iV~~SS~ag~~g~~g~~~YaAaka~~~  685 (795)
T 3slk_A          607 PDEH-PLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDVALVLFSSVSGVLGSGGQGNYAAANSFLD  685 (795)
T ss_dssp             CTTS-CEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTSEEEEEEETHHHHTCSSCHHHHHHHHHHH
T ss_pred             HHhC-CCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEccHHhcCCCCCCHHHHHHHHHHH
Confidence            8876 999999999996  556789999999999999999999999998877  11188888899999999999998777


Q ss_pred             CCCCc---cccccCccCCCCcccCC
Q psy4246         273 LPVSG---SYFNNCCRCPPSKAAQD  294 (328)
Q Consensus       273 ~~~~g---~~~~~~~~~~~~~~~~~  294 (328)
                       .+..   .+..+++.+.|+++.+.
T Consensus       686 -alA~~~~~~Gi~v~sI~pG~v~t~  709 (795)
T 3slk_A          686 -ALAQQRQSRGLPTRSLAWGPWAEH  709 (795)
T ss_dssp             -HHHHHHHHTTCCEEEEEECCCSCC
T ss_pred             -HHHHHHHHcCCeEEEEECCeECcc
Confidence             5552   34456677777777655

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.88  E-value=3e-23  Score=199.79  Aligned_cols=166  Identities=16%  Similarity=0.114  Sum_probs=139.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh---hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGC-RVILACRSL---DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +|++|||||++|||+++|+.|+++|+ +|++++|+.   +..+++.+++...  +.++.++.||++|.++++++++++.+
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~~i~~  316 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQL--GVRVTIAACDAADREALAALLAELPE  316 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTCCT
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999 789999964   3456666666654  67999999999999999999999877


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCccc
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al  271 (328)
                      . ++||+||||||+.   .++.+++.++|+++|++|+.|++++.+++.+.+...    ||+.+..+.+++..|+++|+++
T Consensus       317 ~-g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~~g~~~YaAaKa~l  395 (496)
T 3mje_A          317 D-APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGSGGQPGYAAANAYL  395 (496)
T ss_dssp             T-SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTCTTCHHHHHHHHHH
T ss_pred             h-CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCCCCcHHHHHHHHHH
Confidence            6 7999999999986   456789999999999999999999999887764433    8888888999999999999999


Q ss_pred             cCCCCc---cccccCccCCCCccc
Q psy4246         272 SLPVSG---SYFNNCCRCPPSKAA  292 (328)
Q Consensus       272 ~~~~~g---~~~~~~~~~~~~~~~  292 (328)
                      . .+..   .+..+++.+.|+++.
T Consensus       396 d-ala~~~~~~Gi~v~sV~pG~w~  418 (496)
T 3mje_A          396 D-ALAEHRRSLGLTASSVAWGTWG  418 (496)
T ss_dssp             H-HHHHHHHHTTCCCEEEEECEES
T ss_pred             H-HHHHHHHhcCCeEEEEECCccc
Confidence            8 6663   234455556666543

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.88  E-value=1.1e-23  Score=233.97  Aligned_cols=204  Identities=13%  Similarity=0.062  Sum_probs=146.3

Q ss_pred             CCCCCceEEEcCCCCC-ccHHHHHHHHHCCCeEEEeeCChhH-----HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTG-IGFETARSLALHGCRVILACRSLDK-----ANDAISKILTEKPSAQCIAMELNLCRLKSVKKF  192 (328)
Q Consensus       119 ~~l~~k~~lITGas~G-IG~a~a~~la~~Ga~Vi~~~r~~~~-----~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  192 (328)
                      ..|+||++|||||++| ||+++|+.|+++|++|++++|+.+.     ++++.+++...  +.++.++.||++|.++++++
T Consensus      2132 ~~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~--G~~~~~v~~Dvtd~~~v~~l 2209 (3089)
T 3zen_D         2132 XXXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARF--DATLWVVPANMASYSDIDKL 2209 (3089)
T ss_dssp             CCCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCT--TCEEEEEECCTTCHHHHHHH
T ss_pred             ccCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhc--CCeEEEEEecCCCHHHHHHH
Confidence            3589999999999999 9999999999999999999998766     44555555332  56899999999999999999


Q ss_pred             HHHHHH----hcCCccEEEEcccc----C---CCCCCCChhHHHHH----HhhhhHHHHHHHHHHHHHHHhccc------
Q psy4246         193 AEEYQK----KFRSLNILVLNAGV----F---GLGFSHTEDGFETT----FQVNHLAHFYLTLQLENALIKGAK------  251 (328)
Q Consensus       193 ~~~~~~----~~g~id~lvnnAg~----~---~~~~~~~~~~~~~~----~~vN~~g~~~l~~~~~~~~~~~ss------  251 (328)
                      ++++.+    .||+||+||||||+    .   ....+.+.++|+..    +++|+.+++.+++.+.+.|.....      
T Consensus      2210 v~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~i 2289 (3089)
T 3zen_D         2210 VEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHV 2289 (3089)
T ss_dssp             HHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             HHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence            999998    89999999999998    1   22334455556555    999999999999999999987521      


Q ss_pred             cceecc----cccchhhhccCccccCCCCccc--------cccCccCCCCccc-CCHHHHHHHHHHHHHHHHHHHhcccc
Q psy4246         252 LFARQQ----GAATSIYCATSLDLSLPVSGSY--------FNNCCRCPPSKAA-QDEALATKLWKLSEEMIQSVVSTWLE  318 (328)
Q Consensus       252 ~~~~~~----~~~~~~y~ask~al~~~~~g~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~g~  318 (328)
                      +....+    .++...|++||+|+. +++...        .++++.+.|+... ++.....   +...+..+....|..+
T Consensus      2290 i~~~ss~~g~~g~~~aYsASKaAl~-~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~---~~~~~~~~~~~~r~~~ 2365 (3089)
T 3zen_D         2290 VLPGSPNRGMFGGDGAYGEAKSALD-ALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQN---DAIVSAVEEAGVTTYT 2365 (3089)
T ss_dssp             EEEECSSTTSCSSCSSHHHHGGGHH-HHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTT---TTTHHHHGGGSCBCEE
T ss_pred             EEECCcccccCCCchHHHHHHHHHH-HHHHHHHhccccCCCeEEEEEeecccCCCcccccc---hhHHHHHHhcCCCCCC
Confidence            111111    123458999999999 765322        2345555666554 2211000   0011111122335669


Q ss_pred             cccccccccC
Q psy4246         319 ETTERGEVVF  328 (328)
Q Consensus       319 p~dia~~v~F  328 (328)
                      |+|||.+|+|
T Consensus      2366 PeEIA~avlf 2375 (3089)
T 3zen_D         2366 TDEMAAMLLD 2375 (3089)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999886

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.86  E-value=3.2e-23  Score=177.44  Aligned_cols=178  Identities=17%  Similarity=0.109  Sum_probs=135.3

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||+||||++++++|+++  +|++++|+.+.+++...++.     .  .++.+|++|++++++++++    ++++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~-----~--~~~~~D~~~~~~~~~~~~~----~~~i   67 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG-----A--RALPADLADELEAKALLEE----AGPL   67 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT-----C--EECCCCTTSHHHHHHHHHH----HCSE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc-----C--cEEEeeCCCHHHHHHHHHh----cCCC
Confidence            57999999999999999999999  99999999887766655542     1  7889999999999998876    6899


Q ss_pred             cEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCccccCC
Q psy4246         204 NILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLDLSLP  274 (328)
Q Consensus       204 d~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~al~~~  274 (328)
                      |+||||||+.  .++.+.+.++|++++++|+.|++++++++.   ...       ||..+..+.++...|+++|++++ .
T Consensus        68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~---~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~-~  143 (207)
T 2yut_A           68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHAR---FQKGARAVFFGAYPRYVQVPGFAAYAAAKGALE-A  143 (207)
T ss_dssp             EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCC---EEEEEEEEEECCCHHHHSSTTBHHHHHHHHHHH-H
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH---hcCCcEEEEEcChhhccCCCCcchHHHHHHHHH-H
Confidence            9999999985  345677889999999999999999999981   111       55555566678889999999998 6


Q ss_pred             CCcc-------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         275 VSGS-------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       275 ~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +...       +..+++...|+...++....          ...+++++..|+|+|.+++|
T Consensus       144 ~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~~----------~~~~~~~~~~~~dva~~~~~  194 (207)
T 2yut_A          144 YLEAARKELLREGVHLVLVRLPAVATGLWAP----------LGGPPKGALSPEEAARKVLE  194 (207)
T ss_dssp             HHHHHHHHHHTTTCEEEEECCCCBCSGGGGG----------GTSCCTTCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhCCEEEEEecCcccCCCccc----------cCCCCCCCCCHHHHHHHHHH
Confidence            6533       23455666676655543100          01125788999999887753

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.86  E-value=2.6e-23  Score=177.51  Aligned_cols=169  Identities=12%  Similarity=0.046  Sum_probs=132.2

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+||||++++++|+ +|++|++++|+.+                   .+.+|++|+++++++++++    +++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~----~~~d   60 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITNIDSIKKMYEQV----GKVD   60 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------------------SEECCTTCHHHHHHHHHHH----CCEE
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------------------ceeeecCCHHHHHHHHHHh----CCCC
Confidence            69999999999999999999 9999999999853                   3789999999999988765    8999


Q ss_pred             EEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCccccCCCC
Q psy4246         205 ILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLDLSLPVS  276 (328)
Q Consensus       205 ~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~al~~~~~  276 (328)
                      +||||||+.  .+..+.+.++|++++++|+.+++++++++.+.|.+.      ||..+..+.++...|+++|++++ .+.
T Consensus        61 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~-~~~  139 (202)
T 3d7l_A           61 AIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIVQGASAAMANGAVT-AFA  139 (202)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCCTTCHHHHHHHHHHH-HHH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCCCccHHHHHHHHHHH-HHH
Confidence            999999975  445678899999999999999999999999988654      55556666677889999999998 655


Q ss_pred             ccc------cccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q psy4246         277 GSY------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVV  327 (328)
Q Consensus       277 g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~  327 (328)
                      ..+      ..+++...|+...++....      .+   .....++..|+|+|.+++
T Consensus       140 ~~~~~e~~~gi~v~~v~pg~v~~~~~~~------~~---~~~~~~~~~~~dva~~~~  187 (202)
T 3d7l_A          140 KSAAIEMPRGIRINTVSPNVLEESWDKL------EP---FFEGFLPVPAAKVARAFE  187 (202)
T ss_dssp             HHHTTSCSTTCEEEEEEECCBGGGHHHH------GG---GSTTCCCBCHHHHHHHHH
T ss_pred             HHHHHHccCCeEEEEEecCccCCchhhh------hh---hccccCCCCHHHHHHHHH
Confidence            432      2344455566555443210      00   012467888899887654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.83  E-value=3e-22  Score=176.56  Aligned_cols=179  Identities=19%  Similarity=0.101  Sum_probs=129.0

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||+||||++++++|+++|++|++++|+.+.++.               .+.+|+++.++++++++++   .+++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~D~~~~~~~~~~~~~~---~~~~   63 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA---------------DLSTPGGRETAVAAVLDRC---GGVL   63 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHHHHHHHHHHHH---TTCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc---------------cccCCcccHHHHHHHHHHc---CCCc
Confidence            689999999999999999999999999999998654210               1678999999998888754   3789


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceeccc-----------------
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQG-----------------  258 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~-----------------  258 (328)
                      |+||||||+...     .+.++.++++|+.|++++++++++.|.+.        ||..+..+.                 
T Consensus        64 d~vi~~Ag~~~~-----~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~  138 (255)
T 2dkn_A           64 DGLVCCAGVGVT-----AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEAR  138 (255)
T ss_dssp             SEEEECCCCCTT-----SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHH
T ss_pred             cEEEECCCCCCc-----chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhh
Confidence            999999998642     24589999999999999999999999765        444333322                 


Q ss_pred             ---------ccchhhhccCccccCCCCccc-------cccCccCCCCcccCCHHHHHHH-HH-HHHHHHHH---HHhccc
Q psy4246         259 ---------AATSIYCATSLDLSLPVSGSY-------FNNCCRCPPSKAAQDEALATKL-WK-LSEEMIQS---VVSTWL  317 (328)
Q Consensus       259 ---------~~~~~y~ask~al~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~---~~~r~g  317 (328)
                               ++...|+++|++++ .+...+       ..+++...|+...++.  .... .. ...+....   +++++.
T Consensus       139 ~~~~~~~~~~~~~~Y~~sK~a~~-~~~~~~~~~~~~~gi~v~~v~pg~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  215 (255)
T 2dkn_A          139 AIELAEQQGQTHLAYAGSKYAVT-CLARRNVVDWAGRGVRLNVVAPGAVETPL--LQASKADPRYGESTRRFVAPLGRGS  215 (255)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHH-HHHHHTHHHHHHTTCEEEEEEECCBCSHH--HHHHHHCTTTHHHHHSCCCTTSSCB
T ss_pred             hhhhccccCCcchhHHHHHHHHH-HHHHHHHHHHhhcCcEEEEEcCCcccchh--hhhcccchhhHHHHHHHHHHhcCCC
Confidence                     45678999999988 655332       3444555565554432  2221 11 11111111   456889


Q ss_pred             ccccccccccC
Q psy4246         318 EETTERGEVVF  328 (328)
Q Consensus       318 ~p~dia~~v~F  328 (328)
                      .|+|+|.+++|
T Consensus       216 ~~~dva~~~~~  226 (255)
T 2dkn_A          216 EPREVAEAIAF  226 (255)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999987754

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.83  E-value=3.9e-21  Score=185.33  Aligned_cols=169  Identities=16%  Similarity=0.104  Sum_probs=134.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCChh---HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLD---KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~~---~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      -.++++|||||+||||+++|+.|+++|++ |++++|+..   .++++..++...  +.++.++.||++|.++++++++.+
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHHHH
Confidence            35899999999999999999999999995 999999865   355666666554  678999999999999999999998


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCcc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~a  270 (328)
                       ..+++||+||||||+.  +.+.+.+.+++++++++|+.|++++.+++.+.-...    ||+.+..+.++...|+++|++
T Consensus       302 -~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~g~~~Yaaaka~  380 (486)
T 2fr1_A          302 -GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPGLGGYAPGNAY  380 (486)
T ss_dssp             -CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTTCTTTHHHHHH
T ss_pred             -HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCCCCHHHHHHHHH
Confidence             6679999999999986  445688999999999999999999999885531111    777777888899999999999


Q ss_pred             ccCCCCcc---ccccCccCCCCcccC
Q psy4246         271 LSLPVSGS---YFNNCCRCPPSKAAQ  293 (328)
Q Consensus       271 l~~~~~g~---~~~~~~~~~~~~~~~  293 (328)
                      +. .+...   +..+++.+.++++..
T Consensus       381 l~-~la~~~~~~gi~v~~i~pG~~~~  405 (486)
T 2fr1_A          381 LD-GLAQQRRSDGLPATAVAWGTWAG  405 (486)
T ss_dssp             HH-HHHHHHHHTTCCCEEEEECCBC-
T ss_pred             HH-HHHHHHHhcCCeEEEEECCeeCC
Confidence            88 55421   223444445555443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.80  E-value=2.5e-20  Score=207.62  Aligned_cols=152  Identities=15%  Similarity=0.157  Sum_probs=119.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCChhHH---HHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLDKA---NDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~~~~---~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+|++|||||++|||+++|+.|+++|++ |++++|+..+.   .+..+++...  +.++.++.||++|.++++++++++.
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQ--GVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHT--TCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhC--CCEEEEEecCCCCHHHHHHHHHHHH
Confidence            6899999999999999999999999997 88889885433   3444555443  6789999999999999999999987


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~  269 (328)
                       .+|+||+||||||+.  .++.+++.++|++++++|+.|++++.+++.+.|.+.      ||+.+..+.++...|+++|+
T Consensus      1961 -~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~g~~~Y~aaKa 2039 (2512)
T 2vz8_A         1961 -QLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAGQANYGFANS 2039 (2512)
T ss_dssp             -HHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCTTCHHHHHHHH
T ss_pred             -hcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCCCcHHHHHHHH
Confidence             489999999999985  557889999999999999999999999999987654      77778888899999999999


Q ss_pred             cccCCCCc
Q psy4246         270 DLSLPVSG  277 (328)
Q Consensus       270 al~~~~~g  277 (328)
                      ++. +++.
T Consensus      2040 al~-~l~~ 2046 (2512)
T 2vz8_A         2040 AME-RICE 2046 (2512)
T ss_dssp             HHH-HHHH
T ss_pred             HHH-HHHH
Confidence            998 6664

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.80  E-value=1.2e-19  Score=175.63  Aligned_cols=147  Identities=16%  Similarity=0.199  Sum_probs=123.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChh---HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLD---KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~---~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+|++|||||+||||+++++.|+++|+ +|++++|+..   .++++.+++...  +.++.++.||++|.++++++++.  
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~~--  333 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERDALAALVTA--  333 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHhc--
Confidence            579999999999999999999999999 6999999864   355666666554  67899999999999999998876  


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----cccceecccccchhhhccCcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----ss~~~~~~~~~~~~y~ask~a  270 (328)
                         +++|+||||||+.  ..+.+.+.++++.++++|+.|++++.+++.+.....     ||+.+..+.++...|+++|++
T Consensus       334 ---~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~g~~~YaaaKa~  410 (511)
T 2z5l_A          334 ---YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNAGQGAYAAANAA  410 (511)
T ss_dssp             ---SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCTTBHHHHHHHHH
T ss_pred             ---CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCCCCHHHHHHHHH
Confidence               7899999999986  345678999999999999999999998875431111     777777888899999999999


Q ss_pred             ccCCCC
Q psy4246         271 LSLPVS  276 (328)
Q Consensus       271 l~~~~~  276 (328)
                      ++ .+.
T Consensus       411 ld-~la  415 (511)
T 2z5l_A          411 LD-ALA  415 (511)
T ss_dssp             HH-HHH
T ss_pred             HH-HHH
Confidence            98 655

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.80  E-value=4.4e-21  Score=171.02  Aligned_cols=132  Identities=16%  Similarity=0.088  Sum_probs=105.8

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|++|||||+||||+++++.|+++|++|++++|+..+..           +.++.++.+|++|.++++++++      
T Consensus         1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~------   63 (267)
T 3rft_A            1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADANAVNAMVA------   63 (267)
T ss_dssp             CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCHHHHHHHHT------
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCHHHHHHHHc------
Confidence            45789999999999999999999999999999999865421           3578999999999999988876      


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee------------cccccchhh
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR------------QQGAATSIY  264 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~------------~~~~~~~~y  264 (328)
                       ++|+||||||+.      +.+.|++++++|+.|++++++++.+.-.++    ||+.+.            .+......|
T Consensus        64 -~~D~vi~~Ag~~------~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~~~Y  136 (267)
T 3rft_A           64 -GCDGIVHLGGIS------VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLY  136 (267)
T ss_dssp             -TCSEEEECCSCC------SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCCSHH
T ss_pred             -CCCEEEECCCCc------CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCCCCCCCChH
Confidence             699999999983      445689999999999999999995532111    444332            223445789


Q ss_pred             hccCccccCCCCc
Q psy4246         265 CATSLDLSLPVSG  277 (328)
Q Consensus       265 ~ask~al~~~~~g  277 (328)
                      +++|.+++ .+..
T Consensus       137 ~~sK~~~e-~~~~  148 (267)
T 3rft_A          137 GVSKCFGE-NLAR  148 (267)
T ss_dssp             HHHHHHHH-HHHH
T ss_pred             HHHHHHHH-HHHH
Confidence            99999988 6553

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=99.79  E-value=4.9e-20  Score=136.45  Aligned_cols=81  Identities=22%  Similarity=0.404  Sum_probs=72.5

Q ss_pred             CCCCCCccccceecCCCcEEEEeCcCCccccCCCCCCccccccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchh
Q psy4246          13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFA   92 (328)
Q Consensus        13 ~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~   92 (328)
                      ...+||.+|+++.+++|++||+||.|++|+|++|.....+.+...+|.+|++..+.+|++||+|+.++.++|++|+....
T Consensus         8 ~~~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~~   87 (92)
T 2l5f_A            8 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELED   87 (92)
T ss_dssp             STTBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHHHHT
T ss_pred             cCCCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEECCCCCeeccCchhHhh
Confidence            34669999999999999999999999999999999877665555689999999999999999999999999999987654


Q ss_pred             h
Q psy4246          93 K   93 (328)
Q Consensus        93 ~   93 (328)
                      .
T Consensus        88 ~   88 (92)
T 2l5f_A           88 L   88 (92)
T ss_dssp             S
T ss_pred             h
Confidence            3

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=99.76  E-value=4.2e-20  Score=131.99  Aligned_cols=72  Identities=28%  Similarity=0.548  Sum_probs=66.1

Q ss_pred             ccccceecCCCcEEEEeCcCCccccCCCCCCccccccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccc
Q psy4246          19 PGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        19 ~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      ++|+++.+++|++||+||+|++|+|++|+....+.+...||.||++..+.+|++||+||.++.++|++|+..
T Consensus         2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~~   73 (75)
T 1o6w_A            2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE   73 (75)
T ss_dssp             CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred             CCCeEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEECCCCCEEEEECCCCCEECCCCCCC
Confidence            489999999999999999999999999997766655667899999999999999999999999999999864

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.74  E-value=3.2e-20  Score=162.47  Aligned_cols=185  Identities=11%  Similarity=0.005  Sum_probs=127.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |++|++|||||+||||++++++|+++|+  +|++++|+.+.+....        ..++.++.+|++|.++++++++    
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~----   83 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDDYASAFQ----   83 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGGGGGGGS----
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc--------cCCceEEecCcCCHHHHHHHhc----
Confidence            5789999999999999999999999999  9999999875432211        1257789999999988877654    


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCccccCC
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLSLP  274 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~~~  274 (328)
                         ++|+||||||...     ....++..+++|+.+++++++++.+.-.+.    ||..+..  .....|+++|++++ .
T Consensus        84 ---~~d~vi~~ag~~~-----~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~--~~~~~Y~~sK~~~e-~  152 (242)
T 2bka_A           84 ---GHDVGFCCLGTTR-----GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK--SSNFLYLQVKGEVE-A  152 (242)
T ss_dssp             ---SCSEEEECCCCCH-----HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT--TCSSHHHHHHHHHH-H
T ss_pred             ---CCCEEEECCCccc-----ccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCC--CCcchHHHHHHHHH-H
Confidence               7999999999742     124578899999999999988875532111    4443322  34567999999998 6


Q ss_pred             CCccccc-cCccCCCCcccCCHHHHHHHHHHHHHHHH-HH----HhcccccccccccccC
Q psy4246         275 VSGSYFN-NCCRCPPSKAAQDEALATKLWKLSEEMIQ-SV----VSTWLEETTERGEVVF  328 (328)
Q Consensus       275 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~r~g~p~dia~~v~F  328 (328)
                      +...+.. +++...|+....+................ .+    .+|+..++|+|.+++|
T Consensus       153 ~~~~~~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  212 (242)
T 2bka_A          153 KVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLN  212 (242)
T ss_dssp             HHHTTCCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHH
T ss_pred             HHHhcCCCCeEEEcCceecCCCCCCcHHHHHHHHhhcccCccccCCcccCHHHHHHHHHH
Confidence            6655555 46666676555442110000001111111 11    4678899999988754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.73  E-value=1.2e-18  Score=152.11  Aligned_cols=141  Identities=15%  Similarity=0.113  Sum_probs=104.6

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeE-EEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQC-IAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+|+||++|||||+|+||++++++|+++|++|++++|+.++++++..        .++ .++.+|++         +.+.
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~---------~~~~   79 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLE---------EDFS   79 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTT---------SCCG
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccH---------HHHH
Confidence            46899999999999999999999999999999999999887654322        256 78999998         3344


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceeccc---ccchhhhccCcc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQG---AATSIYCATSLD  270 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~---~~~~~y~ask~a  270 (328)
                      +.++++|+||||||...      .++++..+++|+.+++++++++...-.+.    ||..+..+.   .....|+++|++
T Consensus        80 ~~~~~~D~vi~~ag~~~------~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~~Y~~sK~~  153 (236)
T 3e8x_A           80 HAFASIDAVVFAAGSGP------HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPDQGPMNMRHYLVAKRL  153 (236)
T ss_dssp             GGGTTCSEEEECCCCCT------TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCGGGSCGGGHHHHHHHHH
T ss_pred             HHHcCCCEEEECCCCCC------CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCChhhhhhHHHHHHH
Confidence            55678999999999753      25689999999999999999985542122    554333333   467889999999


Q ss_pred             ccCCCCccccccC
Q psy4246         271 LSLPVSGSYFNNC  283 (328)
Q Consensus       271 l~~~~~g~~~~~~  283 (328)
                      ++ .+...+..++
T Consensus       154 ~e-~~~~~~gi~~  165 (236)
T 3e8x_A          154 AD-DELKRSSLDY  165 (236)
T ss_dssp             HH-HHHHHSSSEE
T ss_pred             HH-HHHHHCCCCE
Confidence            88 5443333333

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.71  E-value=1.9e-17  Score=117.82  Aligned_cols=70  Identities=26%  Similarity=0.517  Sum_probs=66.0

Q ss_pred             ccccceecCCCcEEEEeCcCCccccCCCCCCccccccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCc
Q psy4246          19 PGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR   88 (328)
Q Consensus        19 ~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~   88 (328)
                      .+|+++.+++|++||+|+.|++|+|++|.....+.+...+|.+|++..+.+|++||+|+.+++++|++|+
T Consensus         5 ~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~   74 (75)
T 2jxw_A            5 GRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD   74 (75)
T ss_dssp             CCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred             CCcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECcCCCEeccCcC
Confidence            5799999999999999999999999999987777777789999999999999999999999999999996

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.70  E-value=2.6e-17  Score=151.18  Aligned_cols=152  Identities=14%  Similarity=0.052  Sum_probs=113.8

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHH-HCCCeEEEeeCChhH------------HHHHHHHHHhhCCCCeEEEEEcccCC
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLA-LHGCRVILACRSLDK------------ANDAISKILTEKPSAQCIAMELNLCR  185 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la-~~Ga~Vi~~~r~~~~------------~~~~~~~l~~~~~~~~~~~~~~Dls~  185 (328)
                      ..+.+|++||||||+|||+|++..|| ..|+.|+++++..+.            .....+++.+.  |.++..+.||+++
T Consensus        46 ~~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~--G~~a~~i~~Dv~d  123 (401)
T 4ggo_A           46 GAKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE--GLYSVTIDGDAFS  123 (401)
T ss_dssp             TSCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH--TCCEEEEESCTTS
T ss_pred             ccCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHc--CCCceeEeCCCCC
Confidence            35678999999999999999999999 689999999875432            23344455555  7799999999999


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccCC---------------CC---------------------CCCChhHHHHHH-
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNAGVFG---------------LG---------------------FSHTEDGFETTF-  228 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~---------------~~---------------------~~~~~~~~~~~~-  228 (328)
                      .++++++++++.+.+|+||+||||+|...               |.                     ...+.++++.+. 
T Consensus       124 ~e~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~  203 (401)
T 4ggo_A          124 DEIKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVK  203 (401)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHH
Confidence            99999999999999999999999999631               10                     012445555544 


Q ss_pred             --hhhhHHHHHHHHHHHHHHHhccccceecc------cc--cchhhhccCcccc
Q psy4246         229 --QVNHLAHFYLTLQLENALIKGAKLFARQQ------GA--ATSIYCATSLDLS  272 (328)
Q Consensus       229 --~vN~~g~~~l~~~~~~~~~~~ss~~~~~~------~~--~~~~y~ask~al~  272 (328)
                        ....++.+...+...+.|.+.+++.+...      .+  ...+++++|++|+
T Consensus       204 vMg~s~~s~w~~al~~a~lla~G~siva~SYiGse~t~P~Y~~G~mG~AKaaLE  257 (401)
T 4ggo_A          204 VMGGEDWERWIKQLSKEGLLEEGCITLAYSYIGPEATQALYRKGTIGKAKEHLE  257 (401)
T ss_dssp             HHSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGHHHHTTSHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHhhhcccCCceEEEEeccCcceeecCCCccHHHHHHHHHH
Confidence              44566677777777778888877754332      12  2235689999998

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.67  E-value=6.6e-17  Score=148.35  Aligned_cols=146  Identities=14%  Similarity=0.024  Sum_probs=107.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|++|||||+|+||.+++++|+++|++|++++|+.+....  ..+.......++.++.+|++|.+++.++++.+    
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----   74 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGIENDVKIIHMDLLEFSNIIRTIEKV----   74 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH----
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccccCceeEEECCCCCHHHHHHHHHhc----
Confidence            467899999999999999999999999999999998654321  11222112346888999999999999988876    


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH-hc----cccc--ee---------cccccchhh
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI-KG----AKLF--AR---------QQGAATSIY  264 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~-~~----ss~~--~~---------~~~~~~~~y  264 (328)
                       ++|+||||||...  .+.+.++++..+++|+.|++++++++...-. +.    ||..  +.         .+......|
T Consensus        75 -~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~~~~~Y  151 (345)
T 2z1m_A           75 -QPDEVYNLAAQSF--VGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPY  151 (345)
T ss_dssp             -CCSEEEECCCCCC--HHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHH
T ss_pred             -CCCEEEECCCCcc--hhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCCCCCChh
Confidence             7999999999752  1223467889999999999999999985311 22    3332  11         122346789


Q ss_pred             hccCccccCCCC
Q psy4246         265 CATSLDLSLPVS  276 (328)
Q Consensus       265 ~ask~al~~~~~  276 (328)
                      +++|.+.+ .+.
T Consensus       152 ~~sK~~~e-~~~  162 (345)
T 2z1m_A          152 AVAKLFGH-WIT  162 (345)
T ss_dssp             HHHHHHHH-HHH
T ss_pred             HHHHHHHH-HHH
Confidence            99999988 544

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.66  E-value=9.5e-17  Score=147.06  Aligned_cols=142  Identities=9%  Similarity=0.044  Sum_probs=106.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ..+++++++|||||+|+||.+++++|+++|++|++++|+.....+..    ...  .++.++.+|++|.++++++++++ 
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~l--~~v~~~~~Dl~d~~~~~~~~~~~-   87 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVL----PPV--AGLSVIEGSVTDAGLLERAFDSF-   87 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGS----CSC--TTEEEEECCTTCHHHHHHHHHHH-
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhh----hcc--CCceEEEeeCCCHHHHHHHHhhc-
Confidence            34688999999999999999999999999999999999654322111    111  36788999999999999888765 


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceeccc-----c------cch
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQG-----A------ATS  262 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~-----~------~~~  262 (328)
                          ++|+||||||.....   +.++++  +++|+.|++++++++...=.+.    ||.......     +      ...
T Consensus        88 ----~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~~~~~  158 (330)
T 2pzm_A           88 ----KPTHVVHSAAAYKDP---DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFT  158 (330)
T ss_dssp             ----CCSEEEECCCCCSCT---TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCCCCCS
T ss_pred             ----CCCEEEECCccCCCc---cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCCCCCC
Confidence                799999999986432   455666  9999999999999997531111    443222111     2      567


Q ss_pred             hhhccCccccCCCC
Q psy4246         263 IYCATSLDLSLPVS  276 (328)
Q Consensus       263 ~y~ask~al~~~~~  276 (328)
                      .|+++|.+++ .+.
T Consensus       159 ~Y~~sK~~~e-~~~  171 (330)
T 2pzm_A          159 SYGISKTAGE-AFL  171 (330)
T ss_dssp             HHHHHHHHHH-HHH
T ss_pred             hHHHHHHHHH-HHH
Confidence            8999999987 544

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.65  E-value=2.2e-16  Score=145.73  Aligned_cols=140  Identities=15%  Similarity=0.093  Sum_probs=109.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHC-CC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALH-GC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~-Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+++|+||||||+|+||.+++++|+++ |+ +|++++|+..+......++.    ..++.++.+|++|.+++.++++   
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~---   90 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYALE---   90 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHHTT---
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHHHh---
Confidence            478999999999999999999999999 98 99999999877666555542    3478899999999988877664   


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCccccC
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLSL  273 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~~  273 (328)
                          ++|+||||||....  ........+.+++|+.|+.++++++.+.-.+.    ||..+   ..+...|+++|++.+ 
T Consensus        91 ----~~D~Vih~Aa~~~~--~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~---~~p~~~Y~~sK~~~E-  160 (344)
T 2gn4_A           91 ----GVDICIHAAALKHV--PIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKA---ANPINLYGATKLCSD-  160 (344)
T ss_dssp             ----TCSEEEECCCCCCH--HHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGG---SSCCSHHHHHHHHHH-
T ss_pred             ----cCCEEEECCCCCCC--CchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCcc---CCCccHHHHHHHHHH-
Confidence                69999999997531  11234467899999999999999998764322    33322   223578999999987 


Q ss_pred             CCC
Q psy4246         274 PVS  276 (328)
Q Consensus       274 ~~~  276 (328)
                      .+.
T Consensus       161 ~~~  163 (344)
T 2gn4_A          161 KLF  163 (344)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.63  E-value=2.7e-16  Score=144.28  Aligned_cols=146  Identities=17%  Similarity=0.152  Sum_probs=107.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+++||||||+|+||++++++|+++|++|++++|+.+...+....+.... +.++.++.+|++|.++++++++.     +
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~-----~   77 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDA-----H   77 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHH-----S
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhc-----c
Confidence            46799999999999999999999999999999998765555554444332 45788999999999999998875     4


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee-----------cccccchhhhc
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR-----------QQGAATSIYCA  266 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~-----------~~~~~~~~y~a  266 (328)
                      ++|+||||||....  ....+.....+++|+.+++++++++...-.+.    ||....           .+......|+.
T Consensus        78 ~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~Y~~  155 (341)
T 3enk_A           78 PITAAIHFAALKAV--GESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQ  155 (341)
T ss_dssp             CCCEEEECCCCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTSCCBCSSHHHH
T ss_pred             CCcEEEECcccccc--CccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCCCCCCCChhHH
Confidence            89999999998531  11334556789999999999888765431111    332211           11123468999


Q ss_pred             cCccccCCCC
Q psy4246         267 TSLDLSLPVS  276 (328)
Q Consensus       267 sk~al~~~~~  276 (328)
                      +|.+.+ .+.
T Consensus       156 sK~~~e-~~~  164 (341)
T 3enk_A          156 TKLMAE-QIL  164 (341)
T ss_dssp             HHHHHH-HHH
T ss_pred             HHHHHH-HHH
Confidence            999887 444

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.61  E-value=6.2e-16  Score=141.66  Aligned_cols=112  Identities=13%  Similarity=0.056  Sum_probs=92.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEE-EcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM-ELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+++|++|||||+|+||.+++++|+++|++|++++|+.+..+.+...+.... +.++.++ .+|++|.++++++++    
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~----   82 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIK----   82 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTT----
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHc----
Confidence            4688999999999999999999999999999999999877665555443332 2467888 899999988776654    


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                         ++|+||||||.....     +++++.+++|+.|+.++++++.+
T Consensus        83 ---~~d~vih~A~~~~~~-----~~~~~~~~~n~~g~~~ll~~~~~  120 (342)
T 1y1p_A           83 ---GAAGVAHIASVVSFS-----NKYDEVVTPAIGGTLNALRAAAA  120 (342)
T ss_dssp             ---TCSEEEECCCCCSCC-----SCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---CCCEEEEeCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHh
Confidence               699999999986421     35678999999999999999875

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.61  E-value=2.5e-16  Score=137.99  Aligned_cols=139  Identities=11%  Similarity=-0.038  Sum_probs=100.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHC--CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALH--GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~--Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +.+|++|||||+|+||++++++|+++  |++|++++|+.++.+..         ..++.++.+|++|.++++++++    
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~----   68 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIGDITDADSINPAFQ----   68 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT---------TCCTTEEECCTTSHHHHHHHHT----
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc---------CCCeeEEEecCCCHHHHHHHHc----
Confidence            45789999999999999999999999  89999999987654322         2356788999999998888775    


Q ss_pred             hcCCccEEEEccccCCCC-----------CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchh
Q psy4246         199 KFRSLNILVLNAGVFGLG-----------FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSI  263 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~-----------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~  263 (328)
                         .+|+||||||.....           .+...+.+++.+++|+.++.++++++...-.+.    ||..+.........
T Consensus        69 ---~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~~~~~~~  145 (253)
T 1xq6_A           69 ---GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNK  145 (253)
T ss_dssp             ---TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCGGGG
T ss_pred             ---CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCCCCcccc
Confidence               589999999975210           122234456789999999999999886642222    44433222222333


Q ss_pred             -----hhccCccccCCCC
Q psy4246         264 -----YCATSLDLSLPVS  276 (328)
Q Consensus       264 -----y~ask~al~~~~~  276 (328)
                           |+.+|.+++ .+.
T Consensus       146 ~~~~~y~~sK~~~e-~~~  162 (253)
T 1xq6_A          146 LGNGNILVWKRKAE-QYL  162 (253)
T ss_dssp             GGGCCHHHHHHHHH-HHH
T ss_pred             ccchhHHHHHHHHH-HHH
Confidence                 555888877 443

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.61  E-value=1.3e-15  Score=141.34  Aligned_cols=146  Identities=14%  Similarity=0.026  Sum_probs=103.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH-HHHHHHHhhC--CCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN-DAISKILTEK--PSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~-~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|++|||||+|+||.+++++|+++|++|++++|+..... +....+....  .+.++.++.+|++|.+++.++++.+   
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---   77 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV---   77 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc---
Confidence            478999999999999999999999999999999865421 1112221110  1347888999999999999988865   


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH---hc----cccceecc-----------cccc
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI---KG----AKLFARQQ-----------GAAT  261 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~---~~----ss~~~~~~-----------~~~~  261 (328)
                        ++|+||||||....  ..+.++++..+++|+.|++++++++.+...   ..    ||......           ....
T Consensus        78 --~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~~~~  153 (372)
T 1db3_A           78 --QPDEVYNLGAMSHV--AVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPR  153 (372)
T ss_dssp             --CCSEEEECCCCCTT--TTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCC
T ss_pred             --CCCEEEECCcccCc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCCCCC
Confidence              79999999997532  335567889999999999999999988764   22    33321110           1235


Q ss_pred             hhhhccCccccCCCC
Q psy4246         262 SIYCATSLDLSLPVS  276 (328)
Q Consensus       262 ~~y~ask~al~~~~~  276 (328)
                      ..|+++|.+.+ .+.
T Consensus       154 ~~Y~~sK~~~e-~~~  167 (372)
T 1db3_A          154 SPYAVAKLYAY-WIT  167 (372)
T ss_dssp             SHHHHHHHHHH-HHH
T ss_pred             ChHHHHHHHHH-HHH
Confidence            68999999987 444

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.60  E-value=7.1e-16  Score=141.66  Aligned_cols=139  Identities=14%  Similarity=0.089  Sum_probs=107.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCC-------CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHG-------CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKF  192 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~G-------a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  192 (328)
                      .|+++++|||||+|+||.+++++|+++|       ++|++++|+......        ....++.++.+|++|.++++++
T Consensus        11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~   82 (342)
T 2hrz_A           11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA--------GFSGAVDARAADLSAPGEAEKL   82 (342)
T ss_dssp             CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT--------TCCSEEEEEECCTTSTTHHHHH
T ss_pred             CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc--------ccCCceeEEEcCCCCHHHHHHH
Confidence            5788999999999999999999999999       899999997643211        1145788999999999998887


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH-----hc----cccceeccc-c---
Q psy4246         193 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI-----KG----AKLFARQQG-A---  259 (328)
Q Consensus       193 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~-----~~----ss~~~~~~~-~---  259 (328)
                      ++      +++|+||||||...   ..+.++++..+++|+.|+.++++++.+...     +.    ||....... +   
T Consensus        83 ~~------~~~d~vih~A~~~~---~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~  153 (342)
T 2hrz_A           83 VE------ARPDVIFHLAAIVS---GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPI  153 (342)
T ss_dssp             HH------TCCSEEEECCCCCH---HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSB
T ss_pred             Hh------cCCCEEEECCccCc---ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCc
Confidence            75      47999999999753   124567899999999999999999988652     22    444222111 1   


Q ss_pred             -------cchhhhccCccccCCCC
Q psy4246         260 -------ATSIYCATSLDLSLPVS  276 (328)
Q Consensus       260 -------~~~~y~ask~al~~~~~  276 (328)
                             ....|+++|.+.+ .+.
T Consensus       154 ~E~~~~~~~~~Y~~sK~~~e-~~~  176 (342)
T 2hrz_A          154 PDEFHTTPLTSYGTQKAICE-LLL  176 (342)
T ss_dssp             CTTCCCCCSSHHHHHHHHHH-HHH
T ss_pred             CCCCCCCCcchHHHHHHHHH-HHH
Confidence                   4678999999987 444

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.59  E-value=2.7e-15  Score=137.81  Aligned_cols=143  Identities=13%  Similarity=0.038  Sum_probs=107.6

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      |+||||||+|+||.++++.|+++|++|++++|+. .........+..   ..++.++.+|++|.++++++++..     +
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~-----~   73 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKY-----M   73 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHH-----C
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc---CCceEEEEcCCCCHHHHHHHHhcc-----C
Confidence            5799999999999999999999999999999853 222233334432   236888999999999999888752     7


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh-c----cccceec---------------------
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-G----AKLFARQ---------------------  256 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~----ss~~~~~---------------------  256 (328)
                      +|+||||||...  .+.+.++++..+++|+.|+.++++++.+.+.+ .    ||.....                     
T Consensus        74 ~d~vih~A~~~~--~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~  151 (347)
T 1orr_A           74 PDSCFHLAGQVA--MTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPN  151 (347)
T ss_dssp             CSEEEECCCCCC--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTT
T ss_pred             CCEEEECCcccC--hhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCccccccccccccccc
Confidence            999999999742  12234678899999999999999999998765 2    3332110                     


Q ss_pred             ------ccccchhhhccCccccCCCCc
Q psy4246         257 ------QGAATSIYCATSLDLSLPVSG  277 (328)
Q Consensus       257 ------~~~~~~~y~ask~al~~~~~g  277 (328)
                            +......|+++|.+.+ .+..
T Consensus       152 ~~~e~~~~~~~~~Y~~sK~~~E-~~~~  177 (347)
T 1orr_A          152 GYDESTQLDFHSPYGCSKGAAD-QYML  177 (347)
T ss_dssp             CBCTTSCCCCCHHHHHHHHHHH-HHHH
T ss_pred             CccccCCCCCCCchHHHHHHHH-HHHH
Confidence                  1224678999999988 5443

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.59  E-value=7.7e-16  Score=142.31  Aligned_cols=145  Identities=12%  Similarity=-0.020  Sum_probs=109.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++++||||||+|+||.+++++|+++|++|++++|+..........+.   .+.++.++.+|++|.+++.++++.+    
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~----   79 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR---VADGMQSEIGDIRDQNKLLESIREF----   79 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT---TTTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc---cCCceEEEEccccCHHHHHHHHHhc----
Confidence            567899999999999999999999999999999998755433333321   1347888999999999999888765    


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH-Hhc----cccc--ee-------c---ccccchh
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL-IKG----AKLF--AR-------Q---QGAATSI  263 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~-~~~----ss~~--~~-------~---~~~~~~~  263 (328)
                       ++|+||||||..  ....+.++++..+++|+.|+.++++++.+.- .+.    ||..  +.       .   +......
T Consensus        80 -~~d~vih~A~~~--~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~~~~  156 (357)
T 1rkx_A           80 -QPEIVFHMAAQP--LVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDP  156 (357)
T ss_dssp             -CCSEEEECCSCC--CHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSH
T ss_pred             -CCCEEEECCCCc--ccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCCCCc
Confidence             799999999963  1223456788999999999999999997741 111    4432  11       0   2234678


Q ss_pred             hhccCccccCCCC
Q psy4246         264 YCATSLDLSLPVS  276 (328)
Q Consensus       264 y~ask~al~~~~~  276 (328)
                      |+.+|.+.+ .+.
T Consensus       157 Y~~sK~~~e-~~~  168 (357)
T 1rkx_A          157 YSNSKGCAE-LVT  168 (357)
T ss_dssp             HHHHHHHHH-HHH
T ss_pred             cHHHHHHHH-HHH
Confidence            999999887 444

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.58  E-value=1.5e-15  Score=130.99  Aligned_cols=132  Identities=11%  Similarity=0.025  Sum_probs=96.6

Q ss_pred             ceEEEcCCCCCccHHHHHHHH-HCCCeEEEeeCChh-HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         124 YNAIVTGANTGIGFETARSLA-LHGCRVILACRSLD-KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la-~~Ga~Vi~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      |++|||||+||||+++++.|+ ++|++|++++|+.+ +++++.    ..  +.++.++.+|++|.++++++++       
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~~D~~d~~~~~~~~~-------   72 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID--HERVTVIEGSFQNPGXLEQAVT-------   72 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT--STTEEEEECCTTCHHHHHHHHT-------
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC--CCceEEEECCCCCHHHHHHHHc-------
Confidence            789999999999999999999 89999999999977 554432    12  4578999999999999888775       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccch----------h
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATS----------I  263 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~----------~  263 (328)
                      ++|+||||||..                 |+.     ++.+++.|++.        ||+.+..+.+...          .
T Consensus        73 ~~d~vv~~ag~~-----------------n~~-----~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~~~~~~~~  130 (221)
T 3r6d_A           73 NAEVVFVGAMES-----------------GSD-----MASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPIS  130 (221)
T ss_dssp             TCSEEEESCCCC-----------------HHH-----HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHHHHHHHHTSCHH
T ss_pred             CCCEEEEcCCCC-----------------Chh-----HHHHHHHHHhcCCCeEEEEeeceecCCCCcccccccccccccH
Confidence            689999999953                 332     77778888765        3333332223333          7


Q ss_pred             hhccCccccCCCCccccccCccCCCCcc
Q psy4246         264 YCATSLDLSLPVSGSYFNNCCRCPPSKA  291 (328)
Q Consensus       264 y~ask~al~~~~~g~~~~~~~~~~~~~~  291 (328)
                      |+++|.+++ .+...+..+++...|+..
T Consensus       131 y~~~K~~~e-~~~~~~~i~~~~vrpg~v  157 (221)
T 3r6d_A          131 YVQGERQAR-NVLRESNLNYTILRLTWL  157 (221)
T ss_dssp             HHHHHHHHH-HHHHHSCSEEEEEEECEE
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEechhh
Confidence            999999988 555444444555555443

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.58  E-value=1.3e-15  Score=138.62  Aligned_cols=135  Identities=14%  Similarity=0.065  Sum_probs=103.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .+.+++|||||+|+||.+++++|+++|++|++++|+... +.    +       ++.++.+|++|.++++++++.     
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l-------~~~~~~~Dl~d~~~~~~~~~~-----   72 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----P-------NVEMISLDIMDSQRVKKVISD-----   72 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----T-------TEEEEECCTTCHHHHHHHHHH-----
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----c-------eeeEEECCCCCHHHHHHHHHh-----
Confidence            456789999999999999999999999999999998653 11    1       577899999999999888875     


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH--hc----cccceec-------------ccccc
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI--KG----AKLFARQ-------------QGAAT  261 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~--~~----ss~~~~~-------------~~~~~  261 (328)
                      +++|+||||||....  ..+.++++..+++|+.|+.++++++ +.+.  +.    ||.....             +....
T Consensus        73 ~~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~  149 (321)
T 2pk3_A           73 IKPDYIFHLAAKSSV--KDSWLNKKGTFSTNVFGTLHVLDAV-RDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPM  149 (321)
T ss_dssp             HCCSEEEECCSCCCH--HHHTTCHHHHHHHHHHHHHHHHHHH-HHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCC
T ss_pred             cCCCEEEEcCcccch--hhhhhcHHHHHHHHHHHHHHHHHHH-HHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCC
Confidence            379999999997532  2234468899999999999999999 6652  12    4432211             11346


Q ss_pred             hhhhccCccccCCCC
Q psy4246         262 SIYCATSLDLSLPVS  276 (328)
Q Consensus       262 ~~y~ask~al~~~~~  276 (328)
                      ..|+++|.+.+ .+.
T Consensus       150 ~~Y~~sK~~~E-~~~  163 (321)
T 2pk3_A          150 SPYGVSKASVG-MLA  163 (321)
T ss_dssp             SHHHHHHHHHH-HHH
T ss_pred             CccHHHHHHHH-HHH
Confidence            78999999988 544

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.57  E-value=9.1e-16  Score=142.22  Aligned_cols=150  Identities=13%  Similarity=0.093  Sum_probs=105.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHH--CCCeEEEeeCChhHHHHHH------HHHHhhCCCCeEEEEEcccCCHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLAL--HGCRVILACRSLDKANDAI------SKILTEKPSAQCIAMELNLCRLKSV  189 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~--~Ga~Vi~~~r~~~~~~~~~------~~l~~~~~~~~~~~~~~Dls~~~~v  189 (328)
                      .++|++|+||||||+|+||.+++++|++  +|++|++++|+........      ..... ..+.++.++.+|++|.+++
T Consensus         5 ~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~   83 (362)
T 3sxp_A            5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKN-LIGFKGEVIAADINNPLDL   83 (362)
T ss_dssp             SCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGG-GTTCCSEEEECCTTCHHHH
T ss_pred             chhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhh-ccccCceEEECCCCCHHHH
Confidence            4578999999999999999999999999  9999999999654211000      00001 1244678999999999988


Q ss_pred             HHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh---cccc--ceeccc------
Q psy4246         190 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK---GAKL--FARQQG------  258 (328)
Q Consensus       190 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---~ss~--~~~~~~------  258 (328)
                      +++      ...++|+||||||+..    .+.++++..+++|+.|+.++++++...-.+   -||.  ++....      
T Consensus        84 ~~~------~~~~~D~vih~A~~~~----~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~~~~~E~~  153 (362)
T 3sxp_A           84 RRL------EKLHFDYLFHQAAVSD----TTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKAPNVVGK  153 (362)
T ss_dssp             HHH------TTSCCSEEEECCCCCG----GGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCCSSBCTTS
T ss_pred             HHh------hccCCCEEEECCccCC----ccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCCCCCCCCCCC
Confidence            776      3468999999999653    245678899999999999999998543110   0332  221111      


Q ss_pred             --ccchhhhccCccccCCCCccc
Q psy4246         259 --AATSIYCATSLDLSLPVSGSY  279 (328)
Q Consensus       259 --~~~~~y~ask~al~~~~~g~~  279 (328)
                        .....|+.+|.+.+ .+...+
T Consensus       154 ~~~p~~~Y~~sK~~~E-~~~~~~  175 (362)
T 3sxp_A          154 NESPENVYGFSKLCMD-EFVLSH  175 (362)
T ss_dssp             CCCCSSHHHHHHHHHH-HHHHHT
T ss_pred             CCCCCChhHHHHHHHH-HHHHHH
Confidence              12346999999988 555444

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.57  E-value=2.4e-15  Score=140.29  Aligned_cols=143  Identities=13%  Similarity=-0.036  Sum_probs=106.0

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-----HHHHHHHHHhhCCCC-eEEEEEcccCCHHHHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-----ANDAISKILTEKPSA-QCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-----~~~~~~~l~~~~~~~-~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      |+||||||+|+||.++++.|+++|++|++++|+...     ++.....+...  +. ++.++.+|++|.+++.++++.+ 
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~-  105 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNV--NKALMKLHYADLTDASSLRRWIDVI-  105 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC----------CCEEEEECCTTCHHHHHHHHHHH-
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccc--cccceEEEECCCCCHHHHHHHHHhc-
Confidence            789999999999999999999999999999997643     22211111111  22 6888999999999999888765 


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh-----c----cccceec----------cc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-----G----AKLFARQ----------QG  258 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----~----ss~~~~~----------~~  258 (328)
                          ++|+||||||....  ..+.++++..+++|+.|+.++++++.+...+     .    ||.....          +.
T Consensus       106 ----~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~~~~E~~~~  179 (381)
T 1n7h_A          106 ----KPDEVYNLAAQSHV--AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPF  179 (381)
T ss_dssp             ----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCC
T ss_pred             ----CCCEEEECCcccCc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCCCCCCCCCC
Confidence                79999999997532  2335678899999999999999999998765     2    3332111          12


Q ss_pred             ccchhhhccCccccCCCC
Q psy4246         259 AATSIYCATSLDLSLPVS  276 (328)
Q Consensus       259 ~~~~~y~ask~al~~~~~  276 (328)
                      .....|+.+|.+.+ .+.
T Consensus       180 ~~~~~Y~~sK~~~E-~~~  196 (381)
T 1n7h_A          180 HPRSPYAASKCAAH-WYT  196 (381)
T ss_dssp             CCCSHHHHHHHHHH-HHH
T ss_pred             CCCCchHHHHHHHH-HHH
Confidence            34578999999887 444

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.57  E-value=2e-15  Score=138.39  Aligned_cols=143  Identities=12%  Similarity=0.033  Sum_probs=102.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ..++++++|||||+|+||.+++++|+++|++|++++|+.....+.   +. .  -.++.++.+|++|.++++++++.   
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---l~-~--~~~~~~~~~Dl~d~~~~~~~~~~---   87 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREH---LK-D--HPNLTFVEGSIADHALVNQLIGD---   87 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG---SC-C--CTTEEEEECCTTCHHHHHHHHHH---
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhh---Hh-h--cCCceEEEEeCCCHHHHHHHHhc---
Confidence            356788999999999999999999999999999999975431111   10 0  13678899999999999888875   


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceec----cc--------ccc-
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQ----QG--------AAT-  261 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~----~~--------~~~-  261 (328)
                        +++|+||||||.....   +.++++  +++|+.++.++++++.+.-.+.    ||.....    ..        ... 
T Consensus        88 --~~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~~~~E~~~p~~  160 (333)
T 2q1w_A           88 --LQPDAVVHTAASYKDP---DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPAN  160 (333)
T ss_dssp             --HCCSEEEECCCCCSCT---TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSBCTTSCCCCTT
T ss_pred             --cCCcEEEECceecCCC---ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCCCcCCCCCCCC
Confidence              2799999999986432   345555  9999999999999997742111    3332211    10        223 


Q ss_pred             hhhhccCccccCCCCcc
Q psy4246         262 SIYCATSLDLSLPVSGS  278 (328)
Q Consensus       262 ~~y~ask~al~~~~~g~  278 (328)
                      ..|+++|.+.+ .+...
T Consensus       161 ~~Y~~sK~~~E-~~~~~  176 (333)
T 2q1w_A          161 SSYAISKSANE-DYLEY  176 (333)
T ss_dssp             CHHHHHHHHHH-HHHHH
T ss_pred             CchHHHHHHHH-HHHHh
Confidence            78999999988 54433

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.57  E-value=5.9e-15  Score=138.23  Aligned_cols=146  Identities=10%  Similarity=0.042  Sum_probs=103.8

Q ss_pred             CceEEEcCCCCCccHHHHHHHH-HCCCeEEEeeCChhH---------HHHHHHHHHhhCC---CCe---EEEEEcccCCH
Q psy4246         123 NYNAIVTGANTGIGFETARSLA-LHGCRVILACRSLDK---------ANDAISKILTEKP---SAQ---CIAMELNLCRL  186 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la-~~Ga~Vi~~~r~~~~---------~~~~~~~l~~~~~---~~~---~~~~~~Dls~~  186 (328)
                      +++||||||+|+||.+++++|+ ++|++|++++|+...         .+.+...+.....   ..+   +.++.+|++|.
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            3479999999999999999999 999999999987543         2333222222211   114   88999999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccc---
Q psy4246         187 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGA---  259 (328)
Q Consensus       187 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~---  259 (328)
                      +++++++++    ++++|+||||||.....  .+.++++..+++|+.|++++++++...-.+.    ||.. ..+..   
T Consensus        82 ~~~~~~~~~----~~~~d~vih~A~~~~~~--~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~-v~g~~~~~  154 (397)
T 1gy8_A           82 DFLNGVFTR----HGPIDAVVHMCAFLAVG--ESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAA-IFGNPTMG  154 (397)
T ss_dssp             HHHHHHHHH----SCCCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG-GTBSCCC-
T ss_pred             HHHHHHHHh----cCCCCEEEECCCccCcC--cchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHH-HhCCCCcc
Confidence            998877753    56799999999975321  1446788999999999999999875431111    3322 11111   


Q ss_pred             ----------------cchhhhccCccccCCCC
Q psy4246         260 ----------------ATSIYCATSLDLSLPVS  276 (328)
Q Consensus       260 ----------------~~~~y~ask~al~~~~~  276 (328)
                                      ....|+++|.+.+ .+.
T Consensus       155 ~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e-~~~  186 (397)
T 1gy8_A          155 SVSTNAEPIDINAKKSPESPYGESKLIAE-RMI  186 (397)
T ss_dssp             ----CCCCBCTTSCCBCSSHHHHHHHHHH-HHH
T ss_pred             cccccccCcCccCCCCCCCchHHHHHHHH-HHH
Confidence                            2578999999987 444

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.56  E-value=3.3e-15  Score=136.99  Aligned_cols=114  Identities=15%  Similarity=0.033  Sum_probs=85.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCC--CCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP--SAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++|+||||||+|+||.+++++|+++|++|+++.|+.+...... .+.. .+  +.++.++.+|++|.++++++++    
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVK-HLLD-LPKAETHLTLWKADLADEGSFDEAIK----   76 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHH-HHHT-STTHHHHEEEEECCTTSTTTTHHHHT----
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHH-HHHh-cccCCCeEEEEEcCCCCHHHHHHHHc----
Confidence            46889999999999999999999999999999999876433221 1111 11  1257889999999998877764    


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                         .+|+|||+|+... ..  ..+..+..+++|+.|++++++++.+..
T Consensus        77 ---~~d~Vih~A~~~~-~~--~~~~~~~~~~~nv~gt~~ll~a~~~~~  118 (337)
T 2c29_D           77 ---GCTGVFHVATPMD-FE--SKDPENEVIKPTIEGMLGIMKSCAAAK  118 (337)
T ss_dssp             ---TCSEEEECCCCCC-SS--CSSHHHHTHHHHHHHHHHHHHHHHHHS
T ss_pred             ---CCCEEEEeccccC-CC--CCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence               5899999998642 11  123345789999999999999998865

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.56  E-value=3.4e-15  Score=99.15  Aligned_cols=50  Identities=34%  Similarity=0.644  Sum_probs=42.4

Q ss_pred             CCCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCCccccccCCCCCC
Q psy4246          10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLG   61 (328)
Q Consensus        10 ~~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~~~~~lp~g   61 (328)
                      +.+...+||+|||++++.+|++|||||+||+|+|+||+....+.  .+||.|
T Consensus         8 ~~~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~~~~~--~plp~g   57 (57)
T 2ysd_A            8 AEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQ--SGPSSG   57 (57)
T ss_dssp             CCSCCCSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTCSSCC--CSCCCC
T ss_pred             CCCCCCCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCccccC--CCCCCC
Confidence            55667889999999999999999999999999999999865533  467765

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.56  E-value=3.5e-15  Score=137.68  Aligned_cols=146  Identities=11%  Similarity=0.035  Sum_probs=105.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh----HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD----KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ++++++||||||+|+||.++++.|+++|++|++++|+..    .+..+..++... .+.++.++.+|++|.++++++++ 
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~-  101 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEK-QWSNFKFIQGDIRNLDDCNNACA-  101 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHH-HHTTEEEEECCTTSHHHHHHHHT-
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccc-cCCceEEEECCCCCHHHHHHHhc-
Confidence            467889999999999999999999999999999999753    233222221110 02468899999999988877765 


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceeccc-----------cc
Q psy4246         196 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQG-----------AA  260 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~-----------~~  260 (328)
                            ++|+||||||....  ..+.++++..+++|+.++.++++++.+.-.+.    ||.......           ..
T Consensus       102 ------~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~~~~~  173 (352)
T 1sb8_A          102 ------GVDYVLHQAALGSV--PRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKP  173 (352)
T ss_dssp             ------TCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCC
T ss_pred             ------CCCEEEECCcccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCCCCCC
Confidence                  79999999997531  12346788999999999999999997642111    333221111           13


Q ss_pred             chhhhccCccccCCCC
Q psy4246         261 TSIYCATSLDLSLPVS  276 (328)
Q Consensus       261 ~~~y~ask~al~~~~~  276 (328)
                      ...|+.+|.+.+ .+.
T Consensus       174 ~~~Y~~sK~~~e-~~~  188 (352)
T 1sb8_A          174 LSPYAVTKYVNE-LYA  188 (352)
T ss_dssp             CSHHHHHHHHHH-HHH
T ss_pred             CChhHHHHHHHH-HHH
Confidence            568999999987 544

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.55  E-value=3e-15  Score=92.56  Aligned_cols=37  Identities=49%  Similarity=0.948  Sum_probs=34.2

Q ss_pred             CCCCCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        12 ~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      ++..+||+|||++++++|++|||||+||+|+|++|+.
T Consensus         3 ~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~~   39 (40)
T 2ysg_A            3 SGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM   39 (40)
T ss_dssp             CSSSCCCTTEEEEECSSSCEEEEESSSCCEECCCCCC
T ss_pred             CCcCCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCCC
Confidence            3557899999999999999999999999999999985

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.55  E-value=2.2e-14  Score=134.61  Aligned_cols=121  Identities=12%  Similarity=0.063  Sum_probs=90.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH----------------HHHHHHHhhCCCCeEEEEEccc
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN----------------DAISKILTEKPSAQCIAMELNL  183 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~----------------~~~~~l~~~~~~~~~~~~~~Dl  183 (328)
                      ..++..||||||+|.||.+++++|+++|++|++++|......                +...++.... +.++.++.+|+
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~Dl   86 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDI   86 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCT
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECCC
Confidence            357889999999999999999999999999999998754321                1111111111 34688899999


Q ss_pred             CCHHHHHHHHHHHHHhcCCccEEEEccccCCCC-CCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         184 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       184 s~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      +|.++++++++.+     ++|+||||||..... ...+++++...+++|+.|+.++++++.+.-
T Consensus        87 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~  145 (404)
T 1i24_A           87 CDFEFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG  145 (404)
T ss_dssp             TSHHHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHhcc-----CCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhC
Confidence            9999999888765     699999999975321 122566778899999999999999997754

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}

Probab=99.55  E-value=4.1e-15  Score=95.56  Aligned_cols=43  Identities=37%  Similarity=0.589  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246           7 ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus         7 ~~~~~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      .+.+.|++.+||+|||++.+.+|++|||||+||+|||++|+..
T Consensus         4 ~~~~~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~   46 (49)
T 2zaj_A            4 GSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP   46 (49)
T ss_dssp             SCCCCCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred             CccccCCCCCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence            3457788899999999999999999999999999999999863

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.55  E-value=3.6e-15  Score=137.13  Aligned_cols=145  Identities=14%  Similarity=0.166  Sum_probs=102.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH------HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK------ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~------~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      +|++|||||+|+||.+++++|+++|++|++++|+...      ..+...++.... +.++.++.+|++|.++++++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKKY   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHhc
Confidence            4789999999999999999999999999999875322      112222332211 346888999999999988887652


Q ss_pred             HHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceec-----------c-ccc
Q psy4246         197 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQ-----------Q-GAA  260 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~-----------~-~~~  260 (328)
                           ++|+||||||.....  .+.++++..+++|+.|+.++++++...-.+.    ||.....           + .+.
T Consensus        81 -----~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~~~~p~  153 (348)
T 1ek6_A           81 -----SFMAVIHFAGLKAVG--ESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGC  153 (348)
T ss_dssp             -----CEEEEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCC
T ss_pred             -----CCCEEEECCCCcCcc--chhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCCCCCCC
Confidence                 799999999975311  1346778999999999999998775431111    3332110           1 122


Q ss_pred             chhhhccCccccCCCC
Q psy4246         261 TSIYCATSLDLSLPVS  276 (328)
Q Consensus       261 ~~~y~ask~al~~~~~  276 (328)
                      ...|+++|.+.+ .+.
T Consensus       154 ~~~Y~~sK~~~e-~~~  168 (348)
T 1ek6_A          154 TNPYGKSKFFIE-EMI  168 (348)
T ss_dssp             SSHHHHHHHHHH-HHH
T ss_pred             CCchHHHHHHHH-HHH
Confidence            678999999887 444

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.54  E-value=4.5e-15  Score=91.72  Aligned_cols=37  Identities=46%  Similarity=0.907  Sum_probs=34.0

Q ss_pred             CCCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        13 ~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ...+||+|||++++.+|++|||||+||+|+|+||+.+
T Consensus         4 ~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~~   40 (40)
T 2ysf_A            4 GSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTG   40 (40)
T ss_dssp             CCCCCCSSEEEEECTTCCEEEEETTTCCEESSCTTTC
T ss_pred             CcCCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCCC
Confidence            3467999999999999999999999999999999863

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.54  E-value=4.7e-15  Score=138.03  Aligned_cols=144  Identities=15%  Similarity=-0.036  Sum_probs=104.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-----HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-----ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-----~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |++|||||+|+||.++++.|+++|++|++++|+...     ++.+...+.. ..+.++.++.+|++|.+++.++++.+  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~--  101 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQA-HIEGNMKLHYGDLTDSTCLVKIINEV--  101 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhcc-ccCCCceEEEccCCCHHHHHHHHHhc--
Confidence            689999999999999999999999999999997542     1111111100 01346888999999999999988765  


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH---hc----cccceec-----------cccc
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI---KG----AKLFARQ-----------QGAA  260 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~---~~----ss~~~~~-----------~~~~  260 (328)
                         ++|+||||||....  ..+.++++..+++|+.|+.++++++.+...   +.    ||.....           +...
T Consensus       102 ---~~d~vih~A~~~~~--~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~  176 (375)
T 1t2a_A          102 ---KPTEIYNLGAQSHV--KISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYP  176 (375)
T ss_dssp             ---CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCC
T ss_pred             ---CCCEEEECCCcccc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCCCC
Confidence               69999999997521  123567889999999999999999988764   22    3332211           1123


Q ss_pred             chhhhccCccccCCCC
Q psy4246         261 TSIYCATSLDLSLPVS  276 (328)
Q Consensus       261 ~~~y~ask~al~~~~~  276 (328)
                      ...|+.+|.+.+ .+.
T Consensus       177 ~~~Y~~sK~~~e-~~~  191 (375)
T 1t2a_A          177 RSPYGAAKLYAY-WIV  191 (375)
T ss_dssp             CSHHHHHHHHHH-HHH
T ss_pred             CChhHHHHHHHH-HHH
Confidence            568999999987 444

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.53  E-value=7.7e-16  Score=132.66  Aligned_cols=124  Identities=14%  Similarity=0.177  Sum_probs=96.6

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC-HHHHHHHHHHHHHhcCCc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR-LKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~~~g~i  203 (328)
                      ++|||||+|+||++++++|+++|++|++++|+.+++...          .++.++.+|++| .++++++++       ++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----------~~~~~~~~D~~d~~~~~~~~~~-------~~   64 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----------NNVKAVHFDVDWTPEEMAKQLH-------GM   64 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----------TTEEEEECCTTSCHHHHHTTTT-------TC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----------CCceEEEecccCCHHHHHHHHc-------CC
Confidence            599999999999999999999999999999997653321          468899999999 888776654       69


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceeccccc-------chhhhccCcccc
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAA-------TSIYCATSLDLS  272 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~-------~~~y~ask~al~  272 (328)
                      |+||||||...          ...+++|+.++.++++++...-.+.    ||+.+..+.+.       ...|+.+|.+.+
T Consensus        65 d~vi~~ag~~~----------~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~e~~~~~~~~Y~~sK~~~e  134 (219)
T 3dqp_A           65 DAIINVSGSGG----------KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPEKWIGAGFDALKDYYIAKHFAD  134 (219)
T ss_dssp             SEEEECCCCTT----------SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGGGCCSHHHHHTHHHHHHHHHHH
T ss_pred             CEEEECCcCCC----------CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCCcccccccccccHHHHHHHHHH
Confidence            99999999864          1278899999999998885432111    55544433333       678999999988


Q ss_pred             CCCC
Q psy4246         273 LPVS  276 (328)
Q Consensus       273 ~~~~  276 (328)
                       .+.
T Consensus       135 -~~~  137 (219)
T 3dqp_A          135 -LYL  137 (219)
T ss_dssp             -HHH
T ss_pred             -HHH
Confidence             444

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.53  E-value=6.2e-15  Score=135.83  Aligned_cols=145  Identities=14%  Similarity=0.046  Sum_probs=106.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCC---CeEEEEEcccCCHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPS---AQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~---~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +.+.+|+||||||+|+||.++++.|+++|++|++++|+..........+......   .++.++.+|++|.+++.++++ 
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-   99 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK-   99 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT-
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc-
Confidence            3467899999999999999999999999999999999765444444444332110   478999999999988877765 


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee--ccc---------cc
Q psy4246         196 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR--QQG---------AA  260 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~--~~~---------~~  260 (328)
                            ++|+|||+||....  ..+.+++...+++|+.++.++++++...-.+.    ||....  ...         ..
T Consensus       100 ------~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p  171 (351)
T 3ruf_A          100 ------GVDHVLHQAALGSV--PRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNP  171 (351)
T ss_dssp             ------TCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCC
T ss_pred             ------CCCEEEECCccCCc--chhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCCCCCC
Confidence                  79999999997421  22445678899999999999999986653222    333211  111         12


Q ss_pred             chhhhccCcccc
Q psy4246         261 TSIYCATSLDLS  272 (328)
Q Consensus       261 ~~~y~ask~al~  272 (328)
                      ...|+.+|.+.+
T Consensus       172 ~~~Y~~sK~~~E  183 (351)
T 3ruf_A          172 LSPYAVTKYVNE  183 (351)
T ss_dssp             CSHHHHHHHHHH
T ss_pred             CChhHHHHHHHH
Confidence            467999998877

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.53  E-value=8.5e-15  Score=124.26  Aligned_cols=130  Identities=10%  Similarity=0.065  Sum_probs=95.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++++++||||+|+||++++++|+++|++|++++|+.++....        ...++.++.+|++|.+++.++++       
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~-------   66 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVA-------   66 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHT-------
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc--------cCCceEEEEecCCCHHHHHHHHc-------
Confidence            347899999999999999999999999999999987653211        03468889999999998877764       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccc----cchhhhccCccccC
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGA----ATSIYCATSLDLSL  273 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~----~~~~y~ask~al~~  273 (328)
                      .+|+||||||.... .  +.      .++|+.++..+++++...-.+.    ||........    ....|+.+|.+++ 
T Consensus        67 ~~d~vi~~a~~~~~-~--~~------~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~y~~~K~~~e-  136 (206)
T 1hdo_A           67 GQDAVIVLLGTRND-L--SP------TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMH-  136 (206)
T ss_dssp             TCSEEEECCCCTTC-C--SC------CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHHHHHHHHHH-
T ss_pred             CCCEEEECccCCCC-C--Cc------cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccccccchhHHHHHHHHH-
Confidence            58999999997543 1  11      2488899998888886642222    4442222222    5678999999887 


Q ss_pred             CCC
Q psy4246         274 PVS  276 (328)
Q Consensus       274 ~~~  276 (328)
                      .+.
T Consensus       137 ~~~  139 (206)
T 1hdo_A          137 KVL  139 (206)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.52  E-value=8.1e-15  Score=134.09  Aligned_cols=144  Identities=15%  Similarity=-0.062  Sum_probs=103.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH-HHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN-DAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .+++||||||+|+||.++++.|+++|++|++++|+..... .....+.   ...++.++.+|++|.++++++++.+    
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~----   85 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG---IEGDIQYEDGDMADACSVQRAVIKA----   85 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT---CGGGEEEEECCTTCHHHHHHHHHHH----
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc---ccCceEEEECCCCCHHHHHHHHHHc----
Confidence            5778999999999999999999999999999999765321 1111111   1346889999999999999888765    


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH-hc----cccce--ecc---------cccchhh
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI-KG----AKLFA--RQQ---------GAATSIY  264 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~-~~----ss~~~--~~~---------~~~~~~y  264 (328)
                       ++|+||||||....  ..+.++++..+++|+.|+.++++++.+.-. +.    ||...  ...         ......|
T Consensus        86 -~~d~Vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y  162 (335)
T 1rpn_A           86 -QPQEVYNLAAQSFV--GASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPY  162 (335)
T ss_dssp             -CCSEEEECCSCCCH--HHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHH
T ss_pred             -CCCEEEECccccch--hhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCCCCCChh
Confidence             79999999997431  112346788999999999999999976521 22    33321  111         0124579


Q ss_pred             hccCccccCCCC
Q psy4246         265 CATSLDLSLPVS  276 (328)
Q Consensus       265 ~ask~al~~~~~  276 (328)
                      +.+|.+.+ .+.
T Consensus       163 ~~sK~~~e-~~~  173 (335)
T 1rpn_A          163 GVAKLYGH-WIT  173 (335)
T ss_dssp             HHHHHHHH-HHH
T ss_pred             HHHHHHHH-HHH
Confidence            99999987 444

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.52  E-value=1.1e-14  Score=133.44  Aligned_cols=143  Identities=15%  Similarity=0.149  Sum_probs=98.5

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+|+||.+++++|+++|++|++++|......+....+.... +.++.++.+|++|.++++++++..     ++|
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~-----~~D   75 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDH-----AID   75 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHT-----TCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhcc-----CCC
Confidence            58999999999999999999999999998864321111112222111 346788999999999988887652     699


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee--c---------cc-ccchhhhccC
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR--Q---------QG-AATSIYCATS  268 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~--~---------~~-~~~~~y~ask  268 (328)
                      +||||||.....  ...++....+++|+.|++++++++...-.+.    ||....  .         +. +....|+++|
T Consensus        76 ~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK  153 (338)
T 1udb_A           76 TVIHFAGLKAVG--ESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSK  153 (338)
T ss_dssp             EEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHH
T ss_pred             EEEECCccCccc--cchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHH
Confidence            999999975211  1234567889999999999998765431111    333211  0         11 2367899999


Q ss_pred             ccccCCCC
Q psy4246         269 LDLSLPVS  276 (328)
Q Consensus       269 ~al~~~~~  276 (328)
                      ++++ .+.
T Consensus       154 ~~~e-~~~  160 (338)
T 1udb_A          154 LMVE-QIL  160 (338)
T ss_dssp             HHHH-HHH
T ss_pred             HHHH-HHH
Confidence            9987 444

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.52  E-value=1.5e-14  Score=133.09  Aligned_cols=132  Identities=13%  Similarity=0.009  Sum_probs=98.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++++|+||||||+|+||.++++.|+++|++|++++|+...              .++.++.+|++|.+++.++++    
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~d~~~~~~~~~----   76 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLEDGQALSDAIM----   76 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTTCHHHHHHHHT----
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcCCHHHHHHHHh----
Confidence            46789999999999999999999999999999999998643              356789999999998887765    


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc--cee-----------cccccc
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL--FAR-----------QQGAAT  261 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~--~~~-----------~~~~~~  261 (328)
                         ++|+|||+||...    .+...++..+++|+.|+.++++++...-.+.    ||.  ++.           .+....
T Consensus        77 ---~~d~vih~A~~~~----~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~  149 (347)
T 4id9_A           77 ---GVSAVLHLGAFMS----WAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPN  149 (347)
T ss_dssp             ---TCSEEEECCCCCC----SSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTSCCCCC
T ss_pred             ---CCCEEEECCcccC----cchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCCCCCCC
Confidence               7999999999753    3455668999999999999999986532211    332  111           112345


Q ss_pred             hhhhccCccccCCCC
Q psy4246         262 SIYCATSLDLSLPVS  276 (328)
Q Consensus       262 ~~y~ask~al~~~~~  276 (328)
                      ..|+.+|.+.+ .+.
T Consensus       150 ~~Y~~sK~~~E-~~~  163 (347)
T 4id9_A          150 SPYGLTKLLGE-ELV  163 (347)
T ss_dssp             SHHHHHHHHHH-HHH
T ss_pred             ChHHHHHHHHH-HHH
Confidence            67999998877 443

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}

Probab=99.51  E-value=6.6e-15  Score=89.97  Aligned_cols=35  Identities=49%  Similarity=1.052  Sum_probs=32.3

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      +.+||+|||++.+.+|++|||||+|++|+|+|||.
T Consensus         4 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Prl   38 (38)
T 2law_A            4 EGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL   38 (38)
T ss_dssp             -CCCSSSCCEEEETTTEEEEEETTTTEEESSCTTC
T ss_pred             cCCCCCCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence            46799999999999999999999999999999973

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.51  E-value=6.3e-15  Score=135.49  Aligned_cols=148  Identities=11%  Similarity=0.050  Sum_probs=98.9

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      +.+.+++||||||+|+||.+++++|+++|  ++|++.+|......  ...+.......++.++.+|++|.+++.++++..
T Consensus        20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   97 (346)
T 4egb_A           20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKSIQDHPNYYFVKGEIQNGELLEHVIKER   97 (346)
T ss_dssp             ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhc
Confidence            45788999999999999999999999999  67887777542110  111111122357899999999999999988764


Q ss_pred             HHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc--ceec----------cccc
Q psy4246         197 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL--FARQ----------QGAA  260 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~--~~~~----------~~~~  260 (328)
                           ++|+|||+||....  ..+.++++..+++|+.|+.++++++...-.+.    ||.  ++..          +...
T Consensus        98 -----~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p  170 (346)
T 4egb_A           98 -----DVQVIVNFAAESHV--DRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAP  170 (346)
T ss_dssp             -----TCCEEEECCCCC-----------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTTSCCCC
T ss_pred             -----CCCEEEECCcccch--hhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCCCCCCC
Confidence                 69999999998632  22456678899999999999999987652222    333  1111          0112


Q ss_pred             chhhhccCccccCCCC
Q psy4246         261 TSIYCATSLDLSLPVS  276 (328)
Q Consensus       261 ~~~y~ask~al~~~~~  276 (328)
                      ...|+.+|.+.+ .+.
T Consensus       171 ~~~Y~~sK~~~E-~~~  185 (346)
T 4egb_A          171 NSPYSSSKASAD-MIA  185 (346)
T ss_dssp             CSHHHHHHHHHH-HHH
T ss_pred             CChhHHHHHHHH-HHH
Confidence            467999998877 444

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}

Probab=99.51  E-value=1.3e-14  Score=92.37  Aligned_cols=38  Identities=37%  Similarity=0.963  Sum_probs=34.9

Q ss_pred             CCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        12 ~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      -++.+||+|||++++.+|++|||||+||+|+|+||+..
T Consensus         6 ~~~~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~~   43 (46)
T 2ez5_W            6 GEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG   43 (46)
T ss_dssp             CCSCCCCTTEEEEECTTSSEEEEETTTTEEESBCTTTC
T ss_pred             CCCCCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCCC
Confidence            34567999999999999999999999999999999875

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.51  E-value=6.5e-15  Score=134.76  Aligned_cols=141  Identities=14%  Similarity=0.075  Sum_probs=102.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChh--HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHG--CRVILACRSLD--KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++++|||||+|+||.+++++|+++|  ++|++++|+..  ..+.+ .++.   .+.++.++.+|++|.+++++++    
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~~---~~~~~~~~~~Dl~d~~~~~~~~----   73 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDLE---DDPRYTFVKGDVADYELVKELV----   73 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTTT---TCTTEEEEECCTTCHHHHHHHH----
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhhc---cCCceEEEEcCCCCHHHHHHHh----
Confidence            45679999999999999999999997  89999998641  11111 1111   1347889999999999888877    


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH-hc----ccc--ceec---------ccccc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI-KG----AKL--FARQ---------QGAAT  261 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~-~~----ss~--~~~~---------~~~~~  261 (328)
                         +++|+||||||...  .+.+.++++..+++|+.|++++++++.+.-. +.    ||.  ++..         +....
T Consensus        74 ---~~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~  148 (336)
T 2hun_A           74 ---RKVDGVVHLAAESH--VDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPS  148 (336)
T ss_dssp             ---HTCSEEEECCCCCC--HHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCCCC
T ss_pred             ---hCCCEEEECCCCcC--hhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCCCC
Confidence               37999999999753  1234466788999999999999999988721 12    333  2221         23346


Q ss_pred             hhhhccCccccCCCC
Q psy4246         262 SIYCATSLDLSLPVS  276 (328)
Q Consensus       262 ~~y~ask~al~~~~~  276 (328)
                      ..|+++|.+.+ .+.
T Consensus       149 ~~Y~~sK~~~e-~~~  162 (336)
T 2hun_A          149 SPYSATKAASD-MLV  162 (336)
T ss_dssp             SHHHHHHHHHH-HHH
T ss_pred             CccHHHHHHHH-HHH
Confidence            78999999988 544

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.50  E-value=1.3e-14  Score=131.62  Aligned_cols=130  Identities=17%  Similarity=0.123  Sum_probs=73.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||+|+||.+++++|+++|++|++++|+...            +  +  ++.+|++|.+++.++++..     +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~------------~--~--~~~~Dl~d~~~~~~~~~~~-----~   60 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR------------P--K--FEQVNLLDSNAVHHIIHDF-----Q   60 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----------------------------------CHHHHHHH-----C
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC------------C--C--eEEecCCCHHHHHHHHHhh-----C
Confidence            5789999999999999999999999999999986532            1  1  5789999999988888765     7


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh---ccccceecc----------cccchhhhccCc
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK---GAKLFARQQ----------GAATSIYCATSL  269 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---~ss~~~~~~----------~~~~~~y~ask~  269 (328)
                      +|+||||||....  ..+.++++..+++|+.|+.++++++.+.-.+   -||.....+          ......|+.+|.
T Consensus        61 ~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~~~~~~~~E~~~~~~~~~Y~~sK~  138 (315)
T 2ydy_A           61 PHVIVHCAAERRP--DVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKL  138 (315)
T ss_dssp             CSEEEECC---------------------CHHHHHHHHHHHHHTCEEEEEEEGGGSCSSSCSBCTTSCCCCCSHHHHHHH
T ss_pred             CCEEEECCcccCh--hhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcCCCCCCCCCCCCCCCcCHHHHHHH
Confidence            9999999997532  2356778899999999999999999874211   033322111          234578999999


Q ss_pred             cccCCCC
Q psy4246         270 DLSLPVS  276 (328)
Q Consensus       270 al~~~~~  276 (328)
                      +.+ .+.
T Consensus       139 ~~e-~~~  144 (315)
T 2ydy_A          139 DGE-KAV  144 (315)
T ss_dssp             HHH-HHH
T ss_pred             HHH-HHH
Confidence            887 444

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.50  E-value=2.8e-14  Score=131.89  Aligned_cols=112  Identities=14%  Similarity=0.131  Sum_probs=89.0

Q ss_pred             eEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChh--HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         125 NAIVTGANTGIGFETARSLALH-GCRVILACRSLD--KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +||||||+|+||.++++.|+++ |++|++++|+..  ..+.+ .++.   .+.++.++.+|++|.+++.+++++.     
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~-----   72 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDIS---ESNRYNFEHADICDSAEITRIFEQY-----   72 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTTT---TCTTEEEEECCTTCHHHHHHHHHHH-----
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh-hhhh---cCCCeEEEECCCCCHHHHHHHHhhc-----
Confidence            4999999999999999999998 799999998641  11111 1111   1347889999999999999888753     


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI  247 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~  247 (328)
                      ++|+||||||...  .+.+.++++..+++|+.|++++++++.+.|.
T Consensus        73 ~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~  116 (361)
T 1kew_A           73 QPDAVMHLAAESH--VDRSITGPAAFIETNIVGTYALLEVARKYWS  116 (361)
T ss_dssp             CCSEEEECCSCCC--HHHHHHCTHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCcC--hhhhhhCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7999999999753  1234467789999999999999999999875

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1

Probab=99.50  E-value=1.4e-14  Score=93.23  Aligned_cols=37  Identities=41%  Similarity=0.882  Sum_probs=34.3

Q ss_pred             CCCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        13 ~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ...+||+|||++++.+|++|||||+||+|+|+||+..
T Consensus         8 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~   44 (49)
T 2ysb_A            8 EDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES   44 (49)
T ss_dssp             CCCCCCTTEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCCCCCceEEECCCCCEEEEEcCCCCEEecCCCCC
Confidence            4567999999999999999999999999999999874

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.50  E-value=1.9e-14  Score=131.88  Aligned_cols=132  Identities=13%  Similarity=0.135  Sum_probs=93.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +||||||+|+||.+++++|+++|++|++++|+....+.    +.    ..++.++.+|++|.+++.++++       ++|
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----l~----~~~~~~~~~Dl~d~~~~~~~~~-------~~d   79 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR----LA----YLEPECRVAEMLDHAGLERALR-------GLD   79 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG----GG----GGCCEEEECCTTCHHHHHHHTT-------TCS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh----hc----cCCeEEEEecCCCHHHHHHHHc-------CCC
Confidence            79999999999999999999999999999998765322    11    1267889999999988877664       699


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceeccccc----------------chhh
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAA----------------TSIY  264 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~----------------~~~y  264 (328)
                      +|||+||...    .+.++++..+++|+.++.++++++.+.-.+.    ||.........                ...|
T Consensus        80 ~vih~a~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~~~~~~~Y  155 (342)
T 2x4g_A           80 GVIFSAGYYP----SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSY  155 (342)
T ss_dssp             EEEEC----------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCBCTTCCCSSCCTTSCHH
T ss_pred             EEEECCccCc----CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCCCCCCCCCccccccChH
Confidence            9999999753    2346778899999999999999998752222    44433222222                6689


Q ss_pred             hccCccccCCCC
Q psy4246         265 CATSLDLSLPVS  276 (328)
Q Consensus       265 ~ask~al~~~~~  276 (328)
                      +.+|.+.+ .+.
T Consensus       156 ~~sK~~~e-~~~  166 (342)
T 2x4g_A          156 VLCKWALD-EQA  166 (342)
T ss_dssp             HHHHHHHH-HHH
T ss_pred             HHHHHHHH-HHH
Confidence            99999887 443

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A

Probab=99.49  E-value=1.7e-14  Score=89.93  Aligned_cols=36  Identities=53%  Similarity=0.953  Sum_probs=33.6

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ..+||+|||++.+.+|++|||||+||+|+|++|+..
T Consensus         5 ~~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~~   40 (42)
T 2djy_A            5 SGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS   40 (42)
T ss_dssp             CSCCCSSEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred             cCCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence            467999999999999999999999999999999864

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*

Probab=99.49  E-value=1.8e-14  Score=93.35  Aligned_cols=40  Identities=50%  Similarity=1.031  Sum_probs=36.2

Q ss_pred             CCCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        10 ~~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      +.++.++||+|||++++.+|++|||||+||+|+|++|+..
T Consensus         5 ~~~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~   44 (50)
T 1i5h_W            5 DSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ   44 (50)
T ss_dssp             SSSCCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred             CcccCCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCC
Confidence            3456678999999999999999999999999999999875

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.49  E-value=4.5e-15  Score=131.76  Aligned_cols=128  Identities=17%  Similarity=0.110  Sum_probs=98.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||+|+||.+++++|+++|++|++++|+.....           ..++.++.+|++|.+++.++++       ++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~-------~~   64 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA-----------EAHEEIVACDLADAQAVHDLVK-------DC   64 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC-----------CTTEEECCCCTTCHHHHHHHHT-------TC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc-----------CCCccEEEccCCCHHHHHHHHc-------CC
Confidence            68999999999999999999999999999999864310           1256889999999998887765       59


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccc------------cchhhhcc
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGA------------ATSIYCAT  267 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~------------~~~~y~as  267 (328)
                      |+||||||..      +.+.++..+++|+.+++++++++.+.-.+.    ||.......+            ....|+++
T Consensus        65 d~vi~~a~~~------~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~~Y~~s  138 (267)
T 3ay3_A           65 DGIIHLGGVS------VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLS  138 (267)
T ss_dssp             SEEEECCSCC------SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCSHHHHH
T ss_pred             CEEEECCcCC------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCChHHHH
Confidence            9999999975      234578899999999999999987632111    3332221111            24789999


Q ss_pred             CccccCCCC
Q psy4246         268 SLDLSLPVS  276 (328)
Q Consensus       268 k~al~~~~~  276 (328)
                      |.+++ .+.
T Consensus       139 K~~~e-~~~  146 (267)
T 3ay3_A          139 KCFGE-DLA  146 (267)
T ss_dssp             HHHHH-HHH
T ss_pred             HHHHH-HHH
Confidence            99987 544

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.49  E-value=1.7e-14  Score=136.79  Aligned_cols=139  Identities=10%  Similarity=-0.028  Sum_probs=98.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh---HHHHHHHHHHhhC-------CCCeEEEEEcccCCHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD---KANDAISKILTEK-------PSAQCIAMELNLCRLKSV  189 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~---~~~~~~~~l~~~~-------~~~~~~~~~~Dls~~~~v  189 (328)
                      ...+|+||||||+|+||.+++++|+++|++|++++|+..   ..+.+.+.+...+       ...++.++.+|++|.+++
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  145 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  145 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence            467889999999999999999999999999999999876   3333333332221       135789999999998887


Q ss_pred             HHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccce-ec--------
Q psy4246         190 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFA-RQ--------  256 (328)
Q Consensus       190 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~-~~--------  256 (328)
                      .        .++++|+||||||...     ..+.++..+++|+.|+.++++++.+. .+.    ||+.+ ..        
T Consensus       146 ~--------~~~~~d~Vih~A~~~~-----~~~~~~~~~~~Nv~g~~~l~~aa~~~-~~~~v~~SS~~~G~~~~~~~~~~  211 (427)
T 4f6c_A          146 V--------LPENMDTIIHAGARTD-----HFGDDDEFEKVNVQGTVDVIRLAQQH-HARLIYVSTISVGTYFDIDTEDV  211 (427)
T ss_dssp             C--------CSSCCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHHT-TCEEEEEEEGGGGSEECSSCSCC
T ss_pred             C--------CcCCCCEEEECCcccC-----CCCCHHHHHHHHHHHHHHHHHHHHhc-CCcEEEECchHhCCCccCCCCCc
Confidence            6        5579999999999863     23567889999999999999999871 111    44332 00        


Q ss_pred             ---------ccccchhhhccCcccc
Q psy4246         257 ---------QGAATSIYCATSLDLS  272 (328)
Q Consensus       257 ---------~~~~~~~y~ask~al~  272 (328)
                               +......|+.+|.+.+
T Consensus       212 ~~~E~~~~~~~~~~~~Y~~sK~~~E  236 (427)
T 4f6c_A          212 TFSEADVYKGQLLTSPYTRSKFYSE  236 (427)
T ss_dssp             EECTTCSCSSCCCCSHHHHHHHHHH
T ss_pred             cccccccccCCCCCCchHHHHHHHH
Confidence                     0125678999999887

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-14  Score=97.04  Aligned_cols=44  Identities=36%  Similarity=0.567  Sum_probs=39.5

Q ss_pred             CCCCCCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCCc
Q psy4246           7 ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGV   50 (328)
Q Consensus         7 ~~~~~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~   50 (328)
                      +..+.|++.+||+|||++.+.+|++|||||+||+|||++|+...
T Consensus         4 g~~~~d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~~   47 (60)
T 2yse_A            4 GSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEA   47 (60)
T ss_dssp             CSCCCCCCSSCCSSEEEEECSSSCEEEEETTTTEEESSCHHHHH
T ss_pred             CccccCCCCCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCchh
Confidence            34577888999999999999999999999999999999998753

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A

Probab=99.48  E-value=3e-14  Score=93.19  Aligned_cols=39  Identities=46%  Similarity=0.835  Sum_probs=35.7

Q ss_pred             CCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        11 ~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ..++.+||+|||++++.+|++|||||+||+|+|++|+..
T Consensus        13 ~~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~   51 (53)
T 2jmf_A           13 LINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG   51 (53)
T ss_dssp             TTSCSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCSS
T ss_pred             cCcCCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCC
Confidence            345678999999999999999999999999999999875

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}

Probab=99.48  E-value=2e-15  Score=112.51  Aligned_cols=62  Identities=26%  Similarity=0.493  Sum_probs=55.9

Q ss_pred             CCccccceecCCCcEEEEeCcCCccccCCCCCCccccccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchh
Q psy4246          17 LPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFA   92 (328)
Q Consensus        17 lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~   92 (328)
                      .|.|||++.++.|++||+||++.      +        .++||.||++.++.+|+.||+||.++.++|+||++..+
T Consensus        46 ~p~~we~~~~~~~lV~~vn~~~d------~--------~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~~~  107 (109)
T 3l4h_A           46 DARNFERYQHNRDLVNFINMFAD------T--------RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPLQ  107 (109)
T ss_dssp             CTHHHHHHTTCHHHHHHHHTTCC------T--------TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCCSCC
T ss_pred             CCcChhhhcCcCCceEEeccCCC------C--------CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCcccc
Confidence            69999999999999999999963      1        34699999999999999999999999999999997643

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.47  E-value=1.9e-14  Score=131.85  Aligned_cols=110  Identities=12%  Similarity=0.034  Sum_probs=81.3

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH--HHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA--ISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~--~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +|+||||||+|+||.+++++|+++|++|+++.|+.+.....  ...+. .  ..++.++.+|++|.+++.++++      
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~--~~~~~~~~~Dl~d~~~~~~~~~------   79 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-E--LGDLKIFRADLTDELSFEAPIA------   79 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-G--GSCEEEEECCTTTSSSSHHHHT------
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-C--CCcEEEEecCCCChHHHHHHHc------
Confidence            68899999999999999999999999999988876532111  11222 1  2468889999999988877664      


Q ss_pred             CCccEEEEccccCCCCCCCChhH-HHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDG-FETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~-~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                       ++|+|||+||...    ...++ .++.+++|+.|++++++++.+..
T Consensus        80 -~~D~Vih~A~~~~----~~~~~~~~~~~~~nv~gt~~ll~aa~~~~  121 (338)
T 2rh8_A           80 -GCDFVFHVATPVH----FASEDPENDMIKPAIQGVVNVMKACTRAK  121 (338)
T ss_dssp             -TCSEEEEESSCCC----C---------CHHHHHHHHHHHHHHHHCT
T ss_pred             -CCCEEEEeCCccC----CCCCCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence             5899999998642    12222 24589999999999999998764

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.47  E-value=1.2e-14  Score=131.71  Aligned_cols=136  Identities=15%  Similarity=0.138  Sum_probs=99.5

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+|+||.+++++|+++|++|++++|.......   .+     ..++.++.+|++|.+++++++++.     ++|
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~-----~~~~~~~~~Dl~~~~~~~~~~~~~-----~~d   68 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE---NV-----PKGVPFFRVDLRDKEGVERAFREF-----RPT   68 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG---GS-----CTTCCEECCCTTCHHHHHHHHHHH-----CCS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh---hc-----ccCeEEEECCCCCHHHHHHHHHhc-----CCC
Confidence            59999999999999999999999999999885322110   01     124667899999999998887652     799


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc---cee-c---c------cccchhhhcc
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL---FAR-Q---Q------GAATSIYCAT  267 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~---~~~-~---~------~~~~~~y~as  267 (328)
                      +|||+||....  ..+.+++...+++|+.|++++++++...-.++    ||.   ++. .   +      ......|+++
T Consensus        69 ~vi~~a~~~~~--~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~~Y~~s  146 (311)
T 2p5y_A           69 HVSHQAAQASV--KVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAAS  146 (311)
T ss_dssp             EEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCSHHHHH
T ss_pred             EEEECccccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCChHHHH
Confidence            99999997531  23456788999999999999999986542222    333   121 0   0      1235689999


Q ss_pred             CccccCCCC
Q psy4246         268 SLDLSLPVS  276 (328)
Q Consensus       268 k~al~~~~~  276 (328)
                      |.+++ .+.
T Consensus       147 K~~~e-~~~  154 (311)
T 2p5y_A          147 KAAFE-HYL  154 (311)
T ss_dssp             HHHHH-HHH
T ss_pred             HHHHH-HHH
Confidence            99988 544

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=1.8e-14  Score=124.52  Aligned_cols=125  Identities=9%  Similarity=-0.019  Sum_probs=93.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      +++|||||+|+||+++++.|+++|++|++++|+.++....         ..++.++.+|++|.++++++++       ++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~-------~~   68 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE---------NEHLKVKKADVSSLDEVCEVCK-------GA   68 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC---------CTTEEEECCCTTCHHHHHHHHT-------TC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc---------cCceEEEEecCCCHHHHHHHhc-------CC
Confidence            6899999999999999999999999999999997653211         2478899999999999888775       58


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceeccc----------ccchhhhccCc
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQG----------AATSIYCATSL  269 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~----------~~~~~y~ask~  269 (328)
                      |+||||||....        ....+++|+.++.++++++...-.+.    ||..+..+.          .....|+.+|.
T Consensus        69 d~vi~~a~~~~~--------~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~p~~~Y~~sK~  140 (227)
T 3dhn_A           69 DAVISAFNPGWN--------NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKA  140 (227)
T ss_dssp             SEEEECCCC--------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEEGGGTTCSCGGGHHHHHH
T ss_pred             CEEEEeCcCCCC--------ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCccccCCcchHHHHHHHHH
Confidence            999999986411        11368899999999998886542222    433221111          23577999998


Q ss_pred             ccc
Q psy4246         270 DLS  272 (328)
Q Consensus       270 al~  272 (328)
                      +.+
T Consensus       141 ~~e  143 (227)
T 3dhn_A          141 LGE  143 (227)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}

Probab=99.47  E-value=3.7e-14  Score=90.17  Aligned_cols=38  Identities=39%  Similarity=0.938  Sum_probs=34.8

Q ss_pred             CCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        12 ~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ....+||+|||++++.+|++|||||+||+|+|+||+..
T Consensus         7 ~~~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~~   44 (46)
T 2l4j_A            7 PASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLE   44 (46)
T ss_dssp             TTTSCCCTTCEEEECTTSCEEEEETTTTEEECSCCSSC
T ss_pred             CcCCCCCcCceeEECCCCCEEEEECCCCCEeCCCCCcC
Confidence            44577999999999999999999999999999999864

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=4.4e-14  Score=90.93  Aligned_cols=46  Identities=20%  Similarity=0.327  Sum_probs=42.0

Q ss_pred             CccccCCCCCCccccccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccc
Q psy4246          39 EGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        39 ~~t~w~~p~~~~~~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      ++|+|.||+..      ..||.||++..+.+|++||+||.+++++|++|+..
T Consensus         1 ~tt~W~~P~~~------~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~~   46 (49)
T 2dwv_A            1 GSSGSSGPLER------EGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGP   46 (49)
T ss_dssp             CCSSSCCSCCS------SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCCC
T ss_pred             CeecCcCCCCC------CCCCcCcEEEECCCCCEEEEECCCCCEeccCcCCC
Confidence            47999999873      67999999999999999999999999999999853

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.46  E-value=2.3e-14  Score=133.74  Aligned_cols=139  Identities=15%  Similarity=0.076  Sum_probs=102.2

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..++++|||||+|+||.+++++|+++|++|++++|+.......      .  ..++.++.+|++|.+++.++++      
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~--~~~v~~~~~Dl~d~~~~~~~~~------   92 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------D--MFCDEFHLVDLRVMENCLKVTE------   92 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG------G--GTCSEEEECCTTSHHHHHHHHT------
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh------c--cCCceEEECCCCCHHHHHHHhC------
Confidence            3567899999999999999999999999999999986542110      0  2367889999999998887764      


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceec------------------cc
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQ------------------QG  258 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~------------------~~  258 (328)
                       ++|+|||+||..... ..+.++++..+++|+.++.++++++...-.+.    ||.....                  +.
T Consensus        93 -~~d~Vih~A~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~  170 (379)
T 2c5a_A           93 -GVDHVFNLAADMGGM-GFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPA  170 (379)
T ss_dssp             -TCSEEEECCCCCCCH-HHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSB
T ss_pred             -CCCEEEECceecCcc-cccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCC
Confidence             699999999975321 11245678899999999999999987542222    3332111                  12


Q ss_pred             ccchhhhccCccccCCCC
Q psy4246         259 AATSIYCATSLDLSLPVS  276 (328)
Q Consensus       259 ~~~~~y~ask~al~~~~~  276 (328)
                      .....|+.+|.+.+ .+.
T Consensus       171 ~~~~~Y~~sK~~~E-~~~  187 (379)
T 2c5a_A          171 EPQDAFGLEKLATE-ELC  187 (379)
T ss_dssp             CCSSHHHHHHHHHH-HHH
T ss_pred             CCCChhHHHHHHHH-HHH
Confidence            23567999999887 444

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.46  E-value=3.1e-15  Score=128.08  Aligned_cols=127  Identities=13%  Similarity=-0.006  Sum_probs=97.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+++++||||+|+||.+++++|+++|+  +|++++|+...          .  ..++.++.+|++|.+++++++      
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----------~--~~~~~~~~~D~~~~~~~~~~~------   65 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------E--HPRLDNPVGPLAELLPQLDGS------   65 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------C--CTTEECCBSCHHHHGGGCCSC------
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----------c--CCCceEEeccccCHHHHHHhh------
Confidence            467899999999999999999999998  99999998654          1  236788899999887765543      


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCccccCCC
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLSLPV  275 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~~~~  275 (328)
                         +|+||||||....    +.++++..+++|+.++..+++++.+.-.+.    ||....  ......|+.+|.+++ .+
T Consensus        66 ---~d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~--~~~~~~y~~sK~~~e-~~  135 (215)
T 2a35_A           66 ---IDTAFCCLGTTIK----EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGAD--AKSSIFYNRVKGELE-QA  135 (215)
T ss_dssp             ---CSEEEECCCCCHH----HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCC--TTCSSHHHHHHHHHH-HH
T ss_pred             ---hcEEEECeeeccc----cCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccC--CCCccHHHHHHHHHH-HH
Confidence               8999999997521    245678899999999999999986642221    333222  123568999999987 44


Q ss_pred             C
Q psy4246         276 S  276 (328)
Q Consensus       276 ~  276 (328)
                      .
T Consensus       136 ~  136 (215)
T 2a35_A          136 L  136 (215)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}

Probab=99.46  E-value=2.3e-14  Score=89.09  Aligned_cols=35  Identities=40%  Similarity=1.001  Sum_probs=32.9

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      ..+||+|||++++.+|++|||||+|++|||++|+.
T Consensus         6 ~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr~   40 (41)
T 1wr7_A            6 QSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL   40 (41)
T ss_dssp             CCSSCTTEEEEECTTSCEEEEETTTTEEESSCGGG
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCCC
Confidence            46799999999999999999999999999999985

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.45  E-value=5.7e-14  Score=141.30  Aligned_cols=147  Identities=18%  Similarity=0.211  Sum_probs=100.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+++++|+||||||+|+||.+++++|+++|++|++++|+..........+... .+.++.++.+|++|.++++++++.. 
T Consensus         6 ~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-   83 (699)
T 1z45_A            6 QSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL-TKHHIPFYEVDLCDRKGLEKVFKEY-   83 (699)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHH-HTSCCCEEECCTTCHHHHHHHHHHS-
T ss_pred             ccccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhc-cCCceEEEEcCCCCHHHHHHHHHhC-
Confidence            34578899999999999999999999999999999998754322222222211 1346788999999999988887653 


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee--c-------------cc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR--Q-------------QG  258 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~--~-------------~~  258 (328)
                          ++|+||||||.....  ...+.....+++|+.++.++++++...-.+.    ||....  .             +.
T Consensus        84 ----~~D~Vih~A~~~~~~--~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~  157 (699)
T 1z45_A           84 ----KIDSVIHFAGLKAVG--ESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPL  157 (699)
T ss_dssp             ----CCCEEEECCSCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCC
T ss_pred             ----CCCEEEECCcccCcC--ccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccCCC
Confidence                799999999975311  1123446789999999999988775532121    333211  0             01


Q ss_pred             ccchhhhccCcccc
Q psy4246         259 AATSIYCATSLDLS  272 (328)
Q Consensus       259 ~~~~~y~ask~al~  272 (328)
                      .....|+++|.+++
T Consensus       158 ~p~~~Y~~sK~~~E  171 (699)
T 1z45_A          158 GPTNPYGHTKYAIE  171 (699)
T ss_dssp             CCCSHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHH
Confidence            12468999999887

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}

Probab=99.45  E-value=5.7e-14  Score=86.45  Aligned_cols=35  Identities=49%  Similarity=0.990  Sum_probs=32.9

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      ..+||+|||++.+++|++||+||+|++|||++|+.
T Consensus         4 ~~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~~   38 (39)
T 2kyk_A            4 MGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL   38 (39)
T ss_dssp             SCCCCSSCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence            46799999999999999999999999999999975

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.44  E-value=5e-14  Score=130.17  Aligned_cols=140  Identities=11%  Similarity=0.035  Sum_probs=98.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++++++||||||+|+||.+++++|+++| ++|++++|+.....  ...+    .+  +. +.+|++|.+.++.+++.  .
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~----~~--~~-~~~d~~~~~~~~~~~~~--~  111 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL----VD--LN-IADYMDKEDFLIQIMAG--E  111 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGT----TT--SC-CSEEEEHHHHHHHHHTT--C
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcc----cC--ce-EeeecCcHHHHHHHHhh--c
Confidence            4678899999999999999999999999 89999998764321  0111    11  22 67899998888877653  1


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceeccc-----------ccchh
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQG-----------AATSI  263 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~-----------~~~~~  263 (328)
                      .++++|+|||+||....    +.++++..+++|+.++.++++++.+.-. .    ||.......           .....
T Consensus       112 ~~~~~d~Vih~A~~~~~----~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E~~~~~p~~~  186 (357)
T 2x6t_A          112 EFGDVEAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNV  186 (357)
T ss_dssp             CCSSCCEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSSGGGCCCSSH
T ss_pred             ccCCCCEEEECCcccCC----ccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCCcCCCCCCCh
Confidence            35689999999997643    3456789999999999999999987422 2    333211111           12568


Q ss_pred             hhccCccccCCCC
Q psy4246         264 YCATSLDLSLPVS  276 (328)
Q Consensus       264 y~ask~al~~~~~  276 (328)
                      |+.+|.+.+ .+.
T Consensus       187 Y~~sK~~~E-~~~  198 (357)
T 2x6t_A          187 FGYSKFLFD-EYV  198 (357)
T ss_dssp             HHHHHHHHH-HHH
T ss_pred             hHHHHHHHH-HHH
Confidence            999999887 444

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}

Probab=99.44  E-value=6.2e-14  Score=84.77  Aligned_cols=33  Identities=55%  Similarity=1.101  Sum_probs=31.7

Q ss_pred             CCCCccccceecCCCcEEEEeCcCCccccCCCC
Q psy4246          15 DELPPGWEERVTADGCVYYVNHATEGTQWTHPR   47 (328)
Q Consensus        15 ~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~   47 (328)
                      .+||+|||++.+.+|++||+||+|++|||++|+
T Consensus         3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~   35 (36)
T 1wr3_A            3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS   35 (36)
T ss_dssp             SCSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence            579999999999999999999999999999997

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=7.3e-14  Score=87.78  Aligned_cols=36  Identities=47%  Similarity=1.043  Sum_probs=33.5

Q ss_pred             CCCCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        13 ~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      ...+||+|||++.+.+|++|||||+||+|||++|+.
T Consensus         4 ~~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~   39 (43)
T 2dmv_A            4 GSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG   39 (43)
T ss_dssp             SCCSCCTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred             CCCCCCCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence            346799999999999999999999999999999985

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.43  E-value=8.5e-14  Score=123.48  Aligned_cols=127  Identities=16%  Similarity=0.155  Sum_probs=96.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+|+||.+++++|+ +|++|++++|+.+. .          .+     +.+|++|.++++++++.+     ++|
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~-~----------~~-----~~~Dl~~~~~~~~~~~~~-----~~d   59 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEI-Q----------GG-----YKLDLTDFPRLEDFIIKK-----RPD   59 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCC-T----------TC-----EECCTTSHHHHHHHHHHH-----CCS
T ss_pred             EEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcC-C----------CC-----ceeccCCHHHHHHHHHhc-----CCC
Confidence            59999999999999999999 58999999998642 0          12     789999999999988765     799


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh---ccccceecccc----------cchhhhccCccc
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK---GAKLFARQQGA----------ATSIYCATSLDL  271 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---~ss~~~~~~~~----------~~~~y~ask~al  271 (328)
                      +||||||....  ..+.++++..+++|+.++.++++++.+.-.+   -||..+..+..          ....|+++|.++
T Consensus        60 ~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~  137 (273)
T 2ggs_A           60 VIINAAAMTDV--DKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLG  137 (273)
T ss_dssp             EEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGSCSSSCSBCTTSCCCCSSHHHHHHHHH
T ss_pred             EEEECCcccCh--hhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecceeEcCCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            99999997532  2335678999999999999999999753110   03332221111          256899999998


Q ss_pred             cCCCC
Q psy4246         272 SLPVS  276 (328)
Q Consensus       272 ~~~~~  276 (328)
                      + .+.
T Consensus       138 e-~~~  141 (273)
T 2ggs_A          138 E-TFA  141 (273)
T ss_dssp             H-HHH
T ss_pred             H-HHH
Confidence            7 443

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.43  E-value=6.2e-14  Score=122.19  Aligned_cols=77  Identities=16%  Similarity=0.090  Sum_probs=65.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +..|++|||||+||||+++++.|+++| ++|++++|+.+++.+.        ...++.++.+|++|.++++++++     
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--------~~~~~~~~~~Dl~d~~~~~~~~~-----   87 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--------YPTNSQIIMGDVLNHAALKQAMQ-----   87 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--------CCTTEEEEECCTTCHHHHHHHHT-----
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--------ccCCcEEEEecCCCHHHHHHHhc-----
Confidence            345899999999999999999999999 8999999997654321        13478899999999999888775     


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                        ++|+||||||.
T Consensus        88 --~~D~vv~~a~~   98 (236)
T 3qvo_A           88 --GQDIVYANLTG   98 (236)
T ss_dssp             --TCSEEEEECCS
T ss_pred             --CCCEEEEcCCC
Confidence              68999999985

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.43  E-value=8.1e-14  Score=125.00  Aligned_cols=126  Identities=18%  Similarity=0.244  Sum_probs=96.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .-+++|||||+|+||.+++++|+++|++|++++|+                       .+|++|.+++.++++.+     
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~Dl~d~~~~~~~~~~~-----   62 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNVLAVNKFFNEK-----   62 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCHHHHHHHHHHH-----
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-----------------------cCCCCCHHHHHHHHHhc-----
Confidence            45789999999999999999999999999999986                       27999999998888765     


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceeccc-----------ccchhhhc
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQG-----------AATSIYCA  266 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~-----------~~~~~y~a  266 (328)
                      ++|+||||||....  +.+.++++..+++|+.|+.++++++.+.-. .    ||.....+.           .....|+.
T Consensus        63 ~~d~vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~~~~~~~~~Y~~  139 (292)
T 1vl0_A           63 KPNVVINCAAHTAV--DKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGK  139 (292)
T ss_dssp             CCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHH
T ss_pred             CCCEEEECCccCCH--HHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCCCCCCCCCCCCccHHHH
Confidence            79999999997531  223567889999999999999999977422 2    333211111           13568999


Q ss_pred             cCccccCCCCccc
Q psy4246         267 TSLDLSLPVSGSY  279 (328)
Q Consensus       267 sk~al~~~~~g~~  279 (328)
                      +|.+.+ .+...+
T Consensus       140 sK~~~E-~~~~~~  151 (292)
T 1vl0_A          140 TKLEGE-NFVKAL  151 (292)
T ss_dssp             HHHHHH-HHHHHH
T ss_pred             HHHHHH-HHHHhh
Confidence            999988 544333

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.43  E-value=8.2e-14  Score=127.08  Aligned_cols=134  Identities=10%  Similarity=0.069  Sum_probs=98.9

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      +++|||||+|+||.+++++|+++|++|++++|+.....   .    .. ..++.++.+|++|.+++++++++     .++
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~----~~-~~~~~~~~~D~~~~~~~~~~~~~-----~~~   68 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE---D----AI-TEGAKFYNGDLRDKAFLRDVFTQ-----ENI   68 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---G----GS-CTTSEEEECCTTCHHHHHHHHHH-----SCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch---h----hc-CCCcEEEECCCCCHHHHHHHHhh-----cCC
Confidence            57999999999999999999999999999998754321   1    11 12678899999999998888765     479


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceec-----------ccccchhhhccC
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQ-----------QGAATSIYCATS  268 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~-----------~~~~~~~y~ask  268 (328)
                      |+|||+||....  ..+.++++..+++|+.++.++++++...=.+.    ||.....           +......|+.+|
T Consensus        69 d~vih~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~Y~~sK  146 (330)
T 2c20_A           69 EAVMHFAADSLV--GVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETK  146 (330)
T ss_dssp             EEEEECCCCCCH--HHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTSCCCCSSHHHHHH
T ss_pred             CEEEECCcccCc--cccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCCCCCCCChHHHHH
Confidence            999999997532  11346788999999999999999875431111    3332111           112357899999


Q ss_pred             cccc
Q psy4246         269 LDLS  272 (328)
Q Consensus       269 ~al~  272 (328)
                      .+.+
T Consensus       147 ~~~e  150 (330)
T 2c20_A          147 LAIE  150 (330)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9877

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*

Probab=99.43  E-value=6.3e-14  Score=90.56  Aligned_cols=37  Identities=35%  Similarity=0.817  Sum_probs=32.7

Q ss_pred             CCCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        13 ~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ...+||+|||++.+.+|++|||||+||+|+|++|+..
T Consensus         9 ~~~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~   45 (49)
T 2kpz_A            9 EQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK   45 (49)
T ss_dssp             ---CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC
T ss_pred             cCCCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCC
Confidence            3567999999999999999999999999999999875

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}

Probab=99.42  E-value=1.8e-13  Score=89.93  Aligned_cols=39  Identities=31%  Similarity=0.727  Sum_probs=35.3

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCCCccc
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKK   52 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~   52 (328)
                      .++||+|||++++.+|++|||||+|++|+|++|+.....
T Consensus         9 ~~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~~~~   47 (54)
T 1wmv_A            9 AGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTV   47 (54)
T ss_dssp             SSCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSSCCC
T ss_pred             CCCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCcccc
Confidence            457999999999999999999999999999999986543

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.42  E-value=8.8e-14  Score=126.10  Aligned_cols=133  Identities=15%  Similarity=0.114  Sum_probs=95.6

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |+||||||+|+||.+++++|+++|..|++..++....+..         ...+.++.+|+++ +++.++++       ++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~~---------~~~~~~~~~Dl~~-~~~~~~~~-------~~   64 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFV---------NEAARLVKADLAA-DDIKDYLK-------GA   64 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGGS---------CTTEEEECCCTTT-SCCHHHHT-------TC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhhc---------CCCcEEEECcCCh-HHHHHHhc-------CC
Confidence            5799999999999999999999995555554443322110         3468889999999 87777664       79


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee-----------cccccchhhhccC
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR-----------QQGAATSIYCATS  268 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~-----------~~~~~~~~y~ask  268 (328)
                      |+|||+||..  ....+.++++..+++|+.|++++++++...=.+.    ||....           .+......|+++|
T Consensus        65 d~vih~a~~~--~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK  142 (313)
T 3ehe_A           65 EEVWHIAANP--DVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASK  142 (313)
T ss_dssp             SEEEECCCCC--CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTSCCCCCSHHHHHH
T ss_pred             CEEEECCCCC--ChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCCCCCCCCHHHHHH
Confidence            9999999964  2345667889999999999999999876532112    443211           1233467899999


Q ss_pred             ccccCCCC
Q psy4246         269 LDLSLPVS  276 (328)
Q Consensus       269 ~al~~~~~  276 (328)
                      .+.+ .+.
T Consensus       143 ~~~e-~~~  149 (313)
T 3ehe_A          143 LACE-ALI  149 (313)
T ss_dssp             HHHH-HHH
T ss_pred             HHHH-HHH
Confidence            9988 554

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.42  E-value=3.1e-14  Score=128.86  Aligned_cols=133  Identities=13%  Similarity=0.043  Sum_probs=98.3

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      ++||||||+|+||.+++++|+++|++|++++|+.+......        ...+.++.+|++|.+ +.++++       . 
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dl~d~~-~~~~~~-------~-   63 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV--------NPSAELHVRDLKDYS-WGAGIK-------G-   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS--------CTTSEEECCCTTSTT-TTTTCC-------C-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc--------CCCceEEECccccHH-HHhhcC-------C-
Confidence            46999999999999999999999999999999765422211        346788999999987 554443       3 


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee-----------cccccchhhhccC
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR-----------QQGAATSIYCATS  268 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~-----------~~~~~~~~y~ask  268 (328)
                      |+|||+||..  ....+.+++...+++|+.|++++++++...-.+.    ||....           .+......|+.+|
T Consensus        64 d~vih~A~~~--~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK  141 (312)
T 3ko8_A           64 DVVFHFAANP--EVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAK  141 (312)
T ss_dssp             SEEEECCSSC--SSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHH
T ss_pred             CEEEECCCCC--CchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCCCCCCCCChHHHHH
Confidence            9999999964  2345667789999999999999999986542222    333211           1122457899999


Q ss_pred             ccccCCCC
Q psy4246         269 LDLSLPVS  276 (328)
Q Consensus       269 ~al~~~~~  276 (328)
                      .+.+ .+.
T Consensus       142 ~~~e-~~~  148 (312)
T 3ko8_A          142 AAGE-VMC  148 (312)
T ss_dssp             HHHH-HHH
T ss_pred             HHHH-HHH
Confidence            9988 544

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.41  E-value=7.6e-14  Score=127.76  Aligned_cols=139  Identities=14%  Similarity=0.061  Sum_probs=100.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHC---C---CeEEEeeCChhHH-HHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         125 NAIVTGANTGIGFETARSLALH---G---CRVILACRSLDKA-NDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~---G---a~Vi~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++|||||+|+||.+++++|+++   |   ++|++++|+.... .+....+   ..+.++.++.+|++|.+++++++    
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~----   74 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPV---DADPRLRFVHGDIRDAGLLAREL----   74 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGG---TTCTTEEEEECCTTCHHHHHHHT----
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhc---ccCCCeEEEEcCCCCHHHHHHHh----
Confidence            5999999999999999999997   8   9999999864210 0001111   11347889999999998877765    


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc--ceec---------ccccch
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL--FARQ---------QGAATS  262 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~--~~~~---------~~~~~~  262 (328)
                         .++|+||||||....  +.+.++++..+++|+.|+.++++++.+...+.    ||.  ++..         +.....
T Consensus        75 ---~~~d~Vih~A~~~~~--~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~  149 (337)
T 1r6d_A           75 ---RGVDAIVHFAAESHV--DRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNS  149 (337)
T ss_dssp             ---TTCCEEEECCSCCCH--HHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCS
T ss_pred             ---cCCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCCCCCCCCC
Confidence               479999999997531  22345677899999999999999998864433    333  2211         223467


Q ss_pred             hhhccCccccCCCC
Q psy4246         263 IYCATSLDLSLPVS  276 (328)
Q Consensus       263 ~y~ask~al~~~~~  276 (328)
                      .|+.+|.+.+ .+.
T Consensus       150 ~Y~~sK~~~e-~~~  162 (337)
T 1r6d_A          150 PYAASKAGSD-LVA  162 (337)
T ss_dssp             HHHHHHHHHH-HHH
T ss_pred             chHHHHHHHH-HHH
Confidence            8999999887 544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.41  E-value=7.4e-14  Score=119.85  Aligned_cols=89  Identities=15%  Similarity=0.081  Sum_probs=69.0

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +||||||+|+||++++++|+++|++|++++|+.+++....         .++.++.+|++|.++         +.+.++|
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~---------~~~~~~d   63 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTL---------SDLSDQN   63 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCH---------HHHTTCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhh---------hhhcCCC
Confidence            5899999999999999999999999999999987654321         367889999999887         2235799


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHH
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQL  242 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~  242 (328)
                      +||||||....           ...+|+.++..+++++
T Consensus        64 ~vi~~ag~~~~-----------~~~~~~~~~~~l~~a~   90 (221)
T 3ew7_A           64 VVVDAYGISPD-----------EAEKHVTSLDHLISVL   90 (221)
T ss_dssp             EEEECCCSSTT-----------TTTSHHHHHHHHHHHH
T ss_pred             EEEECCcCCcc-----------ccchHHHHHHHHHHHH
Confidence            99999998421           1345666665555544

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*

Probab=99.41  E-value=1.3e-13  Score=83.45  Aligned_cols=33  Identities=55%  Similarity=1.030  Sum_probs=31.6

Q ss_pred             CCCCccccceecCCCcEEEEeCcCCccccCCCC
Q psy4246          15 DELPPGWEERVTADGCVYYVNHATEGTQWTHPR   47 (328)
Q Consensus        15 ~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~   47 (328)
                      .+||+|||++.+++|++||+||+|++|+|++|+
T Consensus         3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~   35 (36)
T 1wr4_A            3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI   35 (36)
T ss_dssp             TTCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence            579999999999999999999999999999996

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.40  E-value=1.7e-13  Score=117.95  Aligned_cols=121  Identities=17%  Similarity=0.022  Sum_probs=85.0

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+|+||++++++|+++|++|++++|+.+++..+    .    ..++.++.+|++|.++         +.++++|
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----~----~~~~~~~~~D~~d~~~---------~~~~~~d   64 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR----L----GATVATLVKEPLVLTE---------ADLDSVD   64 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----T----CTTSEEEECCGGGCCH---------HHHTTCS
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc----c----CCCceEEecccccccH---------hhcccCC
Confidence            499999999999999999999999999999998765432    1    3468889999999887         2235799


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceeccccc--------------chhhhc
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAA--------------TSIYCA  266 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~--------------~~~y~a  266 (328)
                      +||||||......         ...+|+.++..+++++...= ++    ||..+......              ...|++
T Consensus        65 ~vi~~ag~~~~~~---------~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~~~y~~  134 (224)
T 3h2s_A           65 AVVDALSVPWGSG---------RGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPESAASQPWYDG  134 (224)
T ss_dssp             EEEECCCCCTTSS---------CTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGSTTHHH
T ss_pred             EEEECCccCCCcc---------hhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCCCccchhhHH
Confidence            9999999862111         13568887766665553321 11    33322221111              567888


Q ss_pred             cCcccc
Q psy4246         267 TSLDLS  272 (328)
Q Consensus       267 sk~al~  272 (328)
                      +|.+.+
T Consensus       135 sK~~~e  140 (224)
T 3h2s_A          135 ALYQYY  140 (224)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888765

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.40  E-value=9e-14  Score=125.73  Aligned_cols=135  Identities=14%  Similarity=0.102  Sum_probs=99.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHC--CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALH--GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~--Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +|++|||||+|+||.+++++|+++  |++|++++|+.....     +..     ++.++.+|++|.+++++++++.    
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~~-----~~~~~~~D~~d~~~~~~~~~~~----   67 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VVN-----SGPFEVVNALDFNQIEHLVEVH----   67 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HHH-----SSCEEECCTTCHHHHHHHHHHT----
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----ccC-----CCceEEecCCCHHHHHHHHhhc----
Confidence            467999999999999999999999  899999999765421     111     3567899999999988887653    


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecc------------cccchhh
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQ------------GAATSIY  264 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~------------~~~~~~y  264 (328)
                       ++|+|||+||....   ...++++..+++|+.++.++++++.+.-.+.    ||......            ......|
T Consensus        68 -~~d~vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y  143 (312)
T 2yy7_A           68 -KITDIYLMAALLSA---TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVY  143 (312)
T ss_dssp             -TCCEEEECCCCCHH---HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHH
T ss_pred             -CCCEEEECCccCCC---chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccCcCCCCchh
Confidence             69999999997532   1235678899999999999999986532111    33321111            1235679


Q ss_pred             hccCccccCCCC
Q psy4246         265 CATSLDLSLPVS  276 (328)
Q Consensus       265 ~ask~al~~~~~  276 (328)
                      +.+|.+.+ .+.
T Consensus       144 ~~sK~~~e-~~~  154 (312)
T 2yy7_A          144 GISKQAGE-RWC  154 (312)
T ss_dssp             HHHHHHHH-HHH
T ss_pred             HHHHHHHH-HHH
Confidence            99999887 444

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.40  E-value=1.9e-13  Score=125.60  Aligned_cols=139  Identities=14%  Similarity=0.084  Sum_probs=100.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHC--CCeEEEeeCChhHH-HHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         124 YNAIVTGANTGIGFETARSLALH--GCRVILACRSLDKA-NDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~--Ga~Vi~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|||||+|+||.+++++|+++  |++|++++|+.... .+...++    .+.++.++.+|++|.+++.++++      
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~------   74 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI----LGDRVELVVGDIADAELVDKLAA------   74 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG----CSSSEEEEECCTTCHHHHHHHHT------
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhh----ccCCeEEEECCCCCHHHHHHHhh------
Confidence            68999999999999999999999  89999999864210 0111111    13478899999999988877765      


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh---cccc--ceec-------------------
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK---GAKL--FARQ-------------------  256 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---~ss~--~~~~-------------------  256 (328)
                       .+|+||||||...  .+.+.++++..+++|+.|+.++++++.+.-.+   -||.  ++..                   
T Consensus        75 -~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E  151 (348)
T 1oc2_A           75 -KADAIVHYAAESH--NDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTA  151 (348)
T ss_dssp             -TCSEEEECCSCCC--HHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCT
T ss_pred             -cCCEEEECCcccC--ccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCCCcccccccccccccCCCcCC
Confidence             4699999999753  12234567889999999999999999886221   1333  2221                   


Q ss_pred             --ccccchhhhccCccccCCCC
Q psy4246         257 --QGAATSIYCATSLDLSLPVS  276 (328)
Q Consensus       257 --~~~~~~~y~ask~al~~~~~  276 (328)
                        +......|+++|.+.+ .+.
T Consensus       152 ~~~~~~~~~Y~~sK~~~e-~~~  172 (348)
T 1oc2_A          152 ETNYNPSSPYSSTKAASD-LIV  172 (348)
T ss_dssp             TSCCCCCSHHHHHHHHHH-HHH
T ss_pred             CCCCCCCCccHHHHHHHH-HHH
Confidence              1234578999999988 544

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.40  E-value=1.6e-13  Score=127.44  Aligned_cols=140  Identities=11%  Similarity=0.077  Sum_probs=103.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC-CHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC-RLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-~~~~v~~~~~~~~  197 (328)
                      .|.+++||||||+|+||.+++++|+++ |++|++++|+.+......    .   ..++.++.+|++ |.+++.++++   
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~----~---~~~v~~~~~Dl~~d~~~~~~~~~---   90 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLV----K---HERMHFFEGDITINKEWVEYHVK---   90 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGG----G---STTEEEEECCTTTCHHHHHHHHH---
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhc----c---CCCeEEEeCccCCCHHHHHHHhc---
Confidence            467899999999999999999999998 999999999876543221    1   247899999999 9998888776   


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc--ceeccc-------------
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL--FARQQG-------------  258 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~--~~~~~~-------------  258 (328)
                          ++|+|||+||...+.  ...++....+++|+.++.++++++...- +.    ||.  ++....             
T Consensus        91 ----~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~  163 (372)
T 3slg_A           91 ----KCDVILPLVAIATPA--TYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDASALTYG  163 (372)
T ss_dssp             ----HCSEEEECBCCCCHH--HHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTCCEEEC
T ss_pred             ----cCCEEEEcCccccHH--HHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCccccccccC
Confidence                589999999975321  1235567889999999999999987654 33    333  221110             


Q ss_pred             ---ccchhhhccCccccCCCCc
Q psy4246         259 ---AATSIYCATSLDLSLPVSG  277 (328)
Q Consensus       259 ---~~~~~y~ask~al~~~~~g  277 (328)
                         .....|+.+|.+.+ .+..
T Consensus       164 p~~~p~~~Y~~sK~~~E-~~~~  184 (372)
T 3slg_A          164 PINKPRWIYACSKQLMD-RVIW  184 (372)
T ss_dssp             CTTCTTHHHHHHHHHHH-HHHH
T ss_pred             CCCCCCCcHHHHHHHHH-HHHH
Confidence               23347999999887 4443

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.39  E-value=3.8e-14  Score=132.09  Aligned_cols=141  Identities=16%  Similarity=0.089  Sum_probs=102.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .+++++||||||+|+||.+++++|+++| ++|++++|+.....+   .+.   ...++.++.+|++|.++++++++    
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~l~---~~~~v~~~~~Dl~d~~~l~~~~~----   98 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI---NVP---DHPAVRFSETSITDDALLASLQD----   98 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG---GSC---CCTTEEEECSCTTCHHHHHHCCS----
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh---hcc---CCCceEEEECCCCCHHHHHHHhh----
Confidence            4678899999999999999999999999 999999997643211   010   13478899999999988766554    


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH-HHhc----cccc--ee---------c-----c
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA-LIKG----AKLF--AR---------Q-----Q  257 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~~----ss~~--~~---------~-----~  257 (328)
                         ++|+|||+||....  ..+.++++..+++|+.++.++++++... -.+.    ||..  +.         .     +
T Consensus        99 ---~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~  173 (377)
T 2q1s_A           99 ---EYDYVFHLATYHGN--QSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVS  173 (377)
T ss_dssp             ---CCSEEEECCCCSCH--HHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCCCC
T ss_pred             ---CCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCccccccccc
Confidence               79999999997531  1234567889999999999999988653 2222    3321  10         1     1


Q ss_pred             c-ccchhhhccCccccCCCC
Q psy4246         258 G-AATSIYCATSLDLSLPVS  276 (328)
Q Consensus       258 ~-~~~~~y~ask~al~~~~~  276 (328)
                      . .....|+.+|.+.+ .+.
T Consensus       174 ~~~~~~~Y~~sK~~~E-~~~  192 (377)
T 2q1s_A          174 LHNNDSPYSMSKIFGE-FYS  192 (377)
T ss_dssp             SSCCCSHHHHHHHHHH-HHH
T ss_pred             ccCCCCchHHHHHHHH-HHH
Confidence            1 34567999999887 444

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.39  E-value=2.4e-13  Score=130.78  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=86.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHC---CCeEEEeeCChhHHHHHHHHHHhhCC--------------CCeEEEEEc
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALH---GCRVILACRSLDKANDAISKILTEKP--------------SAQCIAMEL  181 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~---Ga~Vi~~~r~~~~~~~~~~~l~~~~~--------------~~~~~~~~~  181 (328)
                      ...++|+||||||+|+||.+++++|+++   |++|++++|+.+.... ...+.....              ..++.++.+
T Consensus        69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~  147 (478)
T 4dqv_A           69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDA-RRRLEKTFDSGDPELLRHFKELAADRLEVVAG  147 (478)
T ss_dssp             CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHH-HHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHH-HHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence            4568999999999999999999999999   9999999998764322 222222211              258999999


Q ss_pred             ccC------CHHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         182 NLC------RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       182 Dls------~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      |++      +.+.++++++       ++|+||||||....      +.++..+++|+.|+.++++++..
T Consensus       148 Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~------~~~~~~~~~Nv~gt~~ll~aa~~  203 (478)
T 4dqv_A          148 DKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA------FPYHELFGPNVAGTAELIRIALT  203 (478)
T ss_dssp             CTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB------SSCCEEHHHHHHHHHHHHHHHTS
T ss_pred             ECCCcccCCCHHHHHHHHc-------CCCEEEECccccCC------cCHHHHHHHHHHHHHHHHHHHHh
Confidence            999      4455555554       58999999998642      34457789999999999998865

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.38  E-value=2e-13  Score=87.85  Aligned_cols=36  Identities=36%  Similarity=0.804  Sum_probs=33.4

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ..+||+|||++.+.+|++|||||+||+|||++|+..
T Consensus        11 ~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~~   46 (49)
T 2dwv_A           11 REGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGP   46 (49)
T ss_dssp             SSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCCC
T ss_pred             CCCCCcCcEEEECCCCCEEEEECCCCCEeccCcCCC
Confidence            367999999999999999999999999999999863

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.38  E-value=1.6e-13  Score=124.41  Aligned_cols=127  Identities=15%  Similarity=0.173  Sum_probs=95.8

Q ss_pred             eEEEcCCCCCccHHHHHHHHHC--CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         125 NAIVTGANTGIGFETARSLALH--GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~--Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      ++|||||+|+||.+++++|+++  |++|++++|+.....             ++.++.+|++|.+++.++++.     .+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-------------~~~~~~~D~~d~~~~~~~~~~-----~~   62 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-------------GIKFITLDVSNRDEIDRAVEK-----YS   62 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-------------TCCEEECCTTCHHHHHHHHHH-----TT
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-------------CceEEEecCCCHHHHHHHHhh-----cC
Confidence            3899999999999999999999  899999998754311             345789999999998888764     27


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceeccc------------ccchhhhc
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQG------------AATSIYCA  266 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~------------~~~~~y~a  266 (328)
                      +|+|||+||....   ...++++..+++|+.|+.++++++.+.-.+.    ||.......            .....|+.
T Consensus        63 ~d~vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~  139 (317)
T 3ajr_A           63 IDAIFHLAGILSA---KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGV  139 (317)
T ss_dssp             CCEEEECCCCCHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHH
T ss_pred             CcEEEECCcccCC---ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCCchHHH
Confidence            9999999997531   1245678899999999999999987642222    443221111            13578999


Q ss_pred             cCcccc
Q psy4246         267 TSLDLS  272 (328)
Q Consensus       267 sk~al~  272 (328)
                      +|.+.+
T Consensus       140 sK~~~e  145 (317)
T 3ajr_A          140 TKIAAE  145 (317)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999887

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.38  E-value=1.9e-13  Score=124.07  Aligned_cols=110  Identities=17%  Similarity=0.075  Sum_probs=79.3

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC-ChhHHHHHHHHHHhhCC--CCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACR-SLDKANDAISKILTEKP--SAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r-~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ||++|||||+|+||.+++++|+++|++|+++.| +.+..... ..+.. .+  ..++.++.+|++|.++++++++     
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   73 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV-SFLTN-LPGASEKLHFFNADLSNPDSFAAAIE-----   73 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCC-HHHHT-STTHHHHEEECCCCTTCGGGGHHHHT-----
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHH-HHHHh-hhccCCceEEEecCCCCHHHHHHHHc-----
Confidence            588999999999999999999999999999888 54321110 01111 11  1257888999999999887765     


Q ss_pred             cCCccEEEEccccCCCCCCCChhH-HHHHHhhhhHHHHHHHHHHHHH
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDG-FETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~-~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                        .+|+|||||+..    ..+.++ +++++++|+.|++++++++.+.
T Consensus        74 --~~d~vih~A~~~----~~~~~~~~~~~~~~nv~gt~~l~~aa~~~  114 (322)
T 2p4h_X           74 --GCVGIFHTASPI----DFAVSEPEEIVTKRTVDGALGILKACVNS  114 (322)
T ss_dssp             --TCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHTTC
T ss_pred             --CCCEEEEcCCcc----cCCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence              579999999743    222222 4568999999999999999775

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.38  E-value=4.5e-14  Score=126.99  Aligned_cols=109  Identities=18%  Similarity=0.188  Sum_probs=85.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +.+++||++|||||+||||+++++.|+++|++|++++|+.++++++.+++...   ..+.++.+|+++.++++++++   
T Consensus       114 ~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~---~~~~~~~~D~~~~~~~~~~~~---  187 (287)
T 1lu9_A          114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVK---  187 (287)
T ss_dssp             TSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTT---
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEecCCCHHHHHHHHH---
Confidence            35689999999999999999999999999999999999988888777776542   135567899999988776654   


Q ss_pred             HhcCCccEEEEccccCC-C--CCCCCh-hHHHHHHhhhhHHHH
Q psy4246         198 KKFRSLNILVLNAGVFG-L--GFSHTE-DGFETTFQVNHLAHF  236 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~-~--~~~~~~-~~~~~~~~vN~~g~~  236 (328)
                          .+|+||||||+.. +  ..+.+. +.+..++++|+.+++
T Consensus       188 ----~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~  226 (287)
T 1lu9_A          188 ----GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL  226 (287)
T ss_dssp             ----TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred             ----hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence                4799999998632 1  112232 555668888888776

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.37  E-value=4.2e-13  Score=83.07  Aligned_cols=36  Identities=39%  Similarity=0.917  Sum_probs=33.1

Q ss_pred             CCCCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        13 ~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      ...+||+||+++.+.+|++||+||.|++|+|++|+.
T Consensus         4 ~~~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~   39 (40)
T 2ysh_A            4 GSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS   39 (40)
T ss_dssp             CCSSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred             CCCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence            346799999999999999999999999999999974

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1

Probab=99.36  E-value=4.1e-13  Score=81.74  Aligned_cols=34  Identities=50%  Similarity=1.015  Sum_probs=32.1

Q ss_pred             CCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          15 DELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        15 ~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      .+||+||+++.+.+|++||+||.|++|+|++|+.
T Consensus         2 ~~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~   35 (37)
T 1e0m_A            2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM   35 (37)
T ss_dssp             CCSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred             CCCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence            4699999999999999999999999999999986

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.34  E-value=8.5e-13  Score=120.92  Aligned_cols=106  Identities=9%  Similarity=0.007  Sum_probs=82.7

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-HHHHHHHHHHHHhcC
Q psy4246         124 YNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-KSVKKFAEEYQKKFR  201 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~~~~~~~~~g  201 (328)
                      +++|||||+|+||.+++++|+++ |++|++++|+.......    .   ...++.++.+|++|. +.++++++       
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~----~---~~~~~~~~~~D~~~~~~~~~~~~~-------   66 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF----L---NHPHFHFVEGDISIHSEWIEYHVK-------   66 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG----T---TCTTEEEEECCTTTCSHHHHHHHH-------
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh----h---cCCCeEEEeccccCcHHHHHhhcc-------
Confidence            36999999999999999999998 89999999987654321    1   134688999999984 55666654       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      ++|+|||+||...+.  ...++++..+++|+.++.++++++...
T Consensus        67 ~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~  108 (345)
T 2bll_A           67 KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVKY  108 (345)
T ss_dssp             HCSEEEECBCCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHHHT
T ss_pred             CCCEEEEcccccCcc--chhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            489999999975321  123467789999999999999988764

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.33  E-value=1.2e-12  Score=118.81  Aligned_cols=126  Identities=13%  Similarity=0.094  Sum_probs=94.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .++++|||||+|+||.+++++|+++|++|++++|+.                      .+|++|.++++++++..     
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~----------------------~~D~~d~~~~~~~~~~~-----   54 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASE-----   54 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHH-----
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc----------------------cCCccCHHHHHHHHHhc-----
Confidence            467899999999999999999999999999988752                      27999999988888764     


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee----------------cccccc
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR----------------QQGAAT  261 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~----------------~~~~~~  261 (328)
                      ++|+|||+||.... .....++.+..+++|+.++.++++++...-.+.    ||....                ...+..
T Consensus        55 ~~d~vih~a~~~~~-~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~  133 (321)
T 1e6u_A           55 RIDQVYLAAAKVGG-IVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTN  133 (321)
T ss_dssp             CCSEEEECCCCCCC-HHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGG
T ss_pred             CCCEEEEcCeecCC-cchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccCCCCCCC
Confidence            79999999997531 112345678899999999999999987642222    443211                111223


Q ss_pred             hhhhccCccccCCCC
Q psy4246         262 SIYCATSLDLSLPVS  276 (328)
Q Consensus       262 ~~y~ask~al~~~~~  276 (328)
                      ..|+.+|.+.+ .+.
T Consensus       134 ~~Y~~sK~~~E-~~~  147 (321)
T 1e6u_A          134 EPYAIAKIAGI-KLC  147 (321)
T ss_dssp             HHHHHHHHHHH-HHH
T ss_pred             CccHHHHHHHH-HHH
Confidence            58999999887 443

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A

Probab=99.33  E-value=7.4e-13  Score=80.13  Aligned_cols=34  Identities=35%  Similarity=0.750  Sum_probs=31.0

Q ss_pred             CCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          15 DELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        15 ~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      .+||+|||++.+.+| +||+||+|++|||++|+..
T Consensus         2 ~~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~~   35 (38)
T 2ho2_A            2 SDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRA   35 (38)
T ss_dssp             CCSCTTEEEEECSSC-EEEEETTTTEEESSCCCC-
T ss_pred             CcCCCCceEEEeCCC-CEEEecCCCCEeccCCCCC
Confidence            469999999999999 9999999999999999753

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=99.32  E-value=8.7e-13  Score=82.98  Aligned_cols=36  Identities=44%  Similarity=0.837  Sum_probs=32.9

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ..+||+||+++.+.+|++||+||+|++|+|++|+..
T Consensus         6 ~~~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~   41 (43)
T 1ymz_A            6 SMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII   41 (43)
T ss_dssp             -CCCCSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred             CCCCCCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence            457999999999999999999999999999999864

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.32  E-value=1.4e-12  Score=118.11  Aligned_cols=127  Identities=17%  Similarity=0.135  Sum_probs=93.1

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      +++|||||+|+||.++++.|+++|++|++++|+.....     +.      ++.++.+|++ .+++.++++       ++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~------~~~~~~~Dl~-~~~~~~~~~-------~~   63 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-----IN------DYEYRVSDYT-LEDLINQLN-------DV   63 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-HHHHHHHTT-------TC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-----CC------ceEEEEcccc-HHHHHHhhc-------CC
Confidence            68999999999999999999999999999999843321     11      5788999999 888777664       79


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccc--eec---------ccccchhhhccC
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLF--ARQ---------QGAATSIYCATS  268 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~--~~~---------~~~~~~~y~ask  268 (328)
                      |+|||+||.....      +....+++|+.++.++++++...-.++    ||..  +..         +......|+.+|
T Consensus        64 d~Vih~a~~~~~~------~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK  137 (311)
T 3m2p_A           64 DAVVHLAATRGSQ------GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSK  137 (311)
T ss_dssp             SEEEECCCCCCSS------SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTSCCCCSSHHHHHH
T ss_pred             CEEEEccccCCCC------ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCchhHHHH
Confidence            9999999986432      445678999999999999886542222    3321  111         111246799999


Q ss_pred             ccccCCCC
Q psy4246         269 LDLSLPVS  276 (328)
Q Consensus       269 ~al~~~~~  276 (328)
                      .+.+ .+.
T Consensus       138 ~~~E-~~~  144 (311)
T 3m2p_A          138 LACE-HIG  144 (311)
T ss_dssp             HHHH-HHH
T ss_pred             HHHH-HHH
Confidence            8877 444

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=99.31  E-value=1.2e-12  Score=79.82  Aligned_cols=35  Identities=40%  Similarity=0.845  Sum_probs=31.6

Q ss_pred             CCCCCCCccccceecCCCcEEEEeCcCCccccCCCC
Q psy4246          12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR   47 (328)
Q Consensus        12 ~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~   47 (328)
                      +...+||+|||++.+.+| .||+||.|++|||++|+
T Consensus         4 ~~~~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~   38 (39)
T 2ysc_A            4 GSSGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT   38 (39)
T ss_dssp             CCCCCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred             CCCCCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence            445789999999999999 59999999999999995

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.30  E-value=7.4e-13  Score=121.59  Aligned_cols=139  Identities=7%  Similarity=-0.007  Sum_probs=94.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+++++||||||+|+||.+++++|+++|++|++++|+..........+   ....++.++.+|+.+..            
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~------------   88 (343)
T 2b69_A           24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW---IGHENFELINHDVVEPL------------   88 (343)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG---TTCTTEEEEECCTTSCC------------
T ss_pred             ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhh---ccCCceEEEeCccCChh------------
Confidence            467899999999999999999999999999999998643211111111   11346889999998752            


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---cccc--ee--------------ccccc
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKLF--AR--------------QQGAA  260 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~~--~~--------------~~~~~  260 (328)
                      +.++|+|||+||......  ..++++..+++|+.++.++++++...-.+-   ||..  +.              .+...
T Consensus        89 ~~~~d~vih~A~~~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~  166 (343)
T 2b69_A           89 YIEVDQIYHLASPASPPN--YMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGP  166 (343)
T ss_dssp             CCCCSEEEECCSCCSHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSST
T ss_pred             hcCCCEEEECccccCchh--hhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhCCCCCCCCcccccccCCCCCC
Confidence            467999999999753110  123467889999999999999987642110   3321  11              12223


Q ss_pred             chhhhccCccccCCCC
Q psy4246         261 TSIYCATSLDLSLPVS  276 (328)
Q Consensus       261 ~~~y~ask~al~~~~~  276 (328)
                      ...|+.+|.+.+ .+.
T Consensus       167 ~~~Y~~sK~~~E-~~~  181 (343)
T 2b69_A          167 RACYDEGKRVAE-TMC  181 (343)
T ss_dssp             THHHHHHHHHHH-HHH
T ss_pred             CCchHHHHHHHH-HHH
Confidence            467999999887 443

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.29  E-value=8.9e-13  Score=117.88  Aligned_cols=125  Identities=15%  Similarity=0.179  Sum_probs=95.1

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+|+||.++++.|+++|++|++++|.                       .+|++|.+++.++++.+     ++|
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~D~~d~~~~~~~~~~~-----~~d   58 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITNISQVQQVVQEI-----RPH   58 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-----------------------TSCTTCHHHHHHHHHHH-----CCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-----------------------ccCCCCHHHHHHHHHhc-----CCC
Confidence            79999999999999999999999999999982                       38999999999888865     799


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---ccccee--c---------ccccchhhhccCcc
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKLFAR--Q---------QGAATSIYCATSLD  270 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~~~~--~---------~~~~~~~y~ask~a  270 (328)
                      +|||+||....  ..+.++++..+++|+.++.++++++...-.+-   ||....  .         +......|+.+|.+
T Consensus        59 ~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~  136 (287)
T 3sc6_A           59 IIIHCAAYTKV--DQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYA  136 (287)
T ss_dssp             EEEECCCCCCH--HHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCCCCSSCBCTTSCCCCCSHHHHHHHH
T ss_pred             EEEECCcccCh--HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhhhcCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence            99999998631  12235678999999999999999986642211   333211  1         11235689999999


Q ss_pred             ccCCCCcccc
Q psy4246         271 LSLPVSGSYF  280 (328)
Q Consensus       271 l~~~~~g~~~  280 (328)
                      .+ .+...+.
T Consensus       137 ~E-~~~~~~~  145 (287)
T 3sc6_A          137 GE-QFVKELH  145 (287)
T ss_dssp             HH-HHHHHHC
T ss_pred             HH-HHHHHhC
Confidence            88 5544333

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*

Probab=99.28  E-value=2.4e-12  Score=82.17  Aligned_cols=37  Identities=38%  Similarity=0.811  Sum_probs=34.2

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCCCc
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGV   50 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~   50 (328)
                      ..+||+|||++.+++|++||+||+|++|+|++|+...
T Consensus         6 ~~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~~   42 (46)
T 1jmq_A            6 DVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAM   42 (46)
T ss_dssp             SCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTSS
T ss_pred             CCCCCcCcEEEEcCCCceEEEEecCCceeecCCCchh
Confidence            4579999999999999999999999999999999754

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.26  E-value=4.3e-12  Score=114.43  Aligned_cols=135  Identities=12%  Similarity=0.056  Sum_probs=94.8

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         125 NAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      ++|||||+|+||.+++++|+++| ++|++++|+.....  ...+.    +..   +.+|+++.+.++++++..  .++++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~~~---~~~d~~~~~~~~~~~~~~--~~~~~   69 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV----DLN---IADYMDKEDFLIQIMAGE--EFGDV   69 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH----TSC---CSEEEEHHHHHHHHHTTC--CCSSC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC----cce---eccccccHHHHHHHHhcc--ccCCC
Confidence            38999999999999999999999 89999998765421  11121    112   678999888877766421  02369


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee--cc---------cccchhhhccC
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR--QQ---------GAATSIYCATS  268 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~--~~---------~~~~~~y~ask  268 (328)
                      |+|||+||....    +.++++..+++|+.++.++++++...-. .    ||....  ..         ......|+.+|
T Consensus        70 d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK  144 (310)
T 1eq2_A           70 EAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSK  144 (310)
T ss_dssp             CEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHH
T ss_pred             cEEEECcccccC----cccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCCCCCCCChhHHHH
Confidence            999999997643    3456788999999999999999976422 2    333211  11         01256799999


Q ss_pred             ccccCCCC
Q psy4246         269 LDLSLPVS  276 (328)
Q Consensus       269 ~al~~~~~  276 (328)
                      .+.+ .+.
T Consensus       145 ~~~e-~~~  151 (310)
T 1eq2_A          145 FLFD-EYV  151 (310)
T ss_dssp             HHHH-HHH
T ss_pred             HHHH-HHH
Confidence            9887 443

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.26  E-value=1e-11  Score=111.98  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=64.0

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-------hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSL-------DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-------~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      +++++||||+|+||.+++++|+++|++|++++|+.       ++.+.+ .++..    ..+.++.+|++|.+++.++++ 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~----~~v~~v~~D~~d~~~l~~~~~-   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQS----LGVILLEGDINDHETLVKAIK-   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHH----TTCEEEECCTTCHHHHHHHHT-
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHh----CCCEEEEeCCCCHHHHHHHHh-
Confidence            46799999999999999999999999999999986       443322 23322    247789999999988877765 


Q ss_pred             HHHhcCCccEEEEccccC
Q psy4246         196 YQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~  213 (328)
                            ++|+||||||..
T Consensus        76 ------~~d~vi~~a~~~   87 (307)
T 2gas_A           76 ------QVDIVICAAGRL   87 (307)
T ss_dssp             ------TCSEEEECSSSS
T ss_pred             ------CCCEEEECCccc
Confidence                  599999999974

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.25  E-value=1.8e-12  Score=115.71  Aligned_cols=119  Identities=17%  Similarity=0.163  Sum_probs=88.4

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHC--CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         124 YNAIVTGANTGIGFETARSLALH--GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~--Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      |++|||||+|+||.++++.|+++  |++|++++|+.++...+.    .    .++.++.+|++|.+++.++++       
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~----~----~~~~~~~~D~~d~~~l~~~~~-------   65 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA----D----QGVEVRHGDYNQPESLQKAFA-------   65 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH----H----TTCEEEECCTTCHHHHHHHTT-------
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh----h----cCCeEEEeccCCHHHHHHHHh-------
Confidence            46999999999999999999999  999999999876544321    1    256788999999988877664       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCcccc
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      ++|+|||+||..  .   . +      ++|+.++.++++++...-.+.    ||....   .....|+.+|.+.+
T Consensus        66 ~~d~vi~~a~~~--~---~-~------~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~---~~~~~y~~~K~~~E  125 (287)
T 2jl1_A           66 GVSKLLFISGPH--Y---D-N------TLLIVQHANVVKAARDAGVKHIAYTGYAFAE---ESIIPLAHVHLATE  125 (287)
T ss_dssp             TCSEEEECCCCC--S---C-H------HHHHHHHHHHHHHHHHTTCSEEEEEEETTGG---GCCSTHHHHHHHHH
T ss_pred             cCCEEEEcCCCC--c---C-c------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCC---CCCCchHHHHHHHH
Confidence            589999999962  1   1 1      578999999888885432111    333221   12347999999887

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.24  E-value=4.5e-12  Score=126.63  Aligned_cols=109  Identities=9%  Similarity=0.003  Sum_probs=85.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHH-HHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKS-VKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~-v~~~~~~~~~  198 (328)
                      ++++++|||||+|+||.+++++|+++ |++|++++|+.......    .   ...++.++.+|++|.++ ++++++    
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~----~---~~~~v~~v~~Dl~d~~~~~~~~~~----  381 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF----L---NHPHFHFVEGDISIHSEWIEYHVK----  381 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGG----T---TCTTEEEEECCTTTCHHHHHHHHH----
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhh----c---cCCceEEEECCCCCcHHHHHHhhc----
Confidence            57899999999999999999999998 89999999986543221    1   13478899999999765 555543    


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                         ++|+||||||.....  ...++++..+++|+.|+.++++++...
T Consensus       382 ---~~D~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~  423 (660)
T 1z7e_A          382 ---KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVKY  423 (660)
T ss_dssp             ---HCSEEEECCCCCCTH--HHHHSHHHHHHHHTHHHHHHHHHHHHT
T ss_pred             ---CCCEEEECceecCcc--ccccCHHHHHHhhhHHHHHHHHHHHHh
Confidence               589999999975321  123567889999999999999998764

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.24  E-value=7e-13  Score=119.20  Aligned_cols=126  Identities=15%  Similarity=0.084  Sum_probs=93.0

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||+|+||.+++++|+ +|++|++++|+..                   .+.+|++|.+++.++++..     ++|
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------------------~~~~D~~d~~~~~~~~~~~-----~~d   56 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------------------EFCGDFSNPKGVAETVRKL-----RPD   56 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------------------SSCCCTTCHHHHHHHHHHH-----CCS
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------------------cccccCCCHHHHHHHHHhc-----CCC
Confidence            59999999999999999999 8999999998751                   2578999999998888754     699


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh---ccccceecc-----------cccchhhhccCcc
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK---GAKLFARQQ-----------GAATSIYCATSLD  270 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---~ss~~~~~~-----------~~~~~~y~ask~a  270 (328)
                      +|||+||....  ..+.++++..+++|+.++.++++++...-.+   .||.....+           ......|+.+|.+
T Consensus        57 ~vih~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~  134 (299)
T 1n2s_A           57 VIVNAAAHTAV--DKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLA  134 (299)
T ss_dssp             EEEECCCCCCH--HHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHH
T ss_pred             EEEECcccCCH--hhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccEEeCCCCCCCCCCCCCCCccHHHHHHHH
Confidence            99999997531  1123567889999999999999988543111   033221111           1124689999998


Q ss_pred             ccCCCCcc
Q psy4246         271 LSLPVSGS  278 (328)
Q Consensus       271 l~~~~~g~  278 (328)
                      .+ .+...
T Consensus       135 ~E-~~~~~  141 (299)
T 1n2s_A          135 GE-KALQD  141 (299)
T ss_dssp             HH-HHHHH
T ss_pred             HH-HHHHH
Confidence            87 44433

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}

Probab=99.23  E-value=5e-12  Score=94.23  Aligned_cols=38  Identities=34%  Similarity=0.743  Sum_probs=35.2

Q ss_pred             CCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        12 ~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      |..++||+|||++++.+|++|||||+||+|+|++|+..
T Consensus        68 d~~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~  105 (109)
T 3l4h_A           68 DTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP  105 (109)
T ss_dssp             CTTSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCCS
T ss_pred             CCCCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCcc
Confidence            45678999999999999999999999999999999874

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.23  E-value=7.1e-13  Score=118.60  Aligned_cols=127  Identities=18%  Similarity=0.109  Sum_probs=91.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +++++|||| +|+||.++++.|+++|++|++++|+.+.+            ..++.++.+|++|.+++.++++      +
T Consensus         2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~------~   62 (286)
T 3gpi_A            2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM------------PAGVQTLIADVTRPDTLASIVH------L   62 (286)
T ss_dssp             CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC------------CTTCCEEECCTTCGGGCTTGGG------G
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCCceEEccCCChHHHHHhhc------C
Confidence            467899999 59999999999999999999999986541            2467789999999998877665      3


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccc--eec---------ccccchhhhc
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLF--ARQ---------QGAATSIYCA  266 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~--~~~---------~~~~~~~y~a  266 (328)
                      ++|+|||+||..       ..+.+..+++|+.++.++++++...-.+.    ||..  +..         +......|+.
T Consensus        63 ~~d~vih~a~~~-------~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~  135 (286)
T 3gpi_A           63 RPEILVYCVAAS-------EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGK  135 (286)
T ss_dssp             CCSEEEECHHHH-------HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTSCCCCCSHHHH
T ss_pred             CCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCCCCCCCChhhH
Confidence            699999999973       24557788999999999998885311111    3321  111         1113568999


Q ss_pred             cCccccCCC
Q psy4246         267 TSLDLSLPV  275 (328)
Q Consensus       267 sk~al~~~~  275 (328)
                      +|.+.+ .+
T Consensus       136 sK~~~E-~~  143 (286)
T 3gpi_A          136 RMLEAE-AL  143 (286)
T ss_dssp             HHHHHH-HH
T ss_pred             HHHHHH-HH
Confidence            998887 54

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}

Probab=99.23  E-value=7.6e-12  Score=82.09  Aligned_cols=36  Identities=36%  Similarity=0.748  Sum_probs=32.5

Q ss_pred             CCCCCccccceecC-CCcEEEEeCcCCccccCCCCCC
Q psy4246          14 EDELPPGWEERVTA-DGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        14 ~~~lp~~w~~~~~~-~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      +.+||+||+++.+. .|++||+||.|++|||++|...
T Consensus         5 ~~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~   41 (54)
T 2jv4_A            5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT   41 (54)
T ss_dssp             CCCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred             CCCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence            35699999999985 9999999999999999999864

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.21  E-value=5.6e-12  Score=113.42  Aligned_cols=127  Identities=10%  Similarity=-0.001  Sum_probs=84.2

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +|++|||||+|+||.++++.|+++| ++|++++|+.++...  ..+..    ..+.++.+|++|++++.++++       
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~----~~~~~~~~D~~d~~~l~~~~~-------   71 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL----QGAEVVQGDQDDQVIMELALN-------   71 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH----TTCEEEECCTTCHHHHHHHHT-------
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH----CCCEEEEecCCCHHHHHHHHh-------
Confidence            5789999999999999999999999 999999998765421  22222    246788999999998877765       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---cccceecc---cccchhhhccCcccc
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKLFARQQ---GAATSIYCATSLDLS  272 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~~~~~~---~~~~~~y~ask~al~  272 (328)
                      ++|+||||||.....          ..+.|+.++..+++++...-.+.   +|..+..+   ......|..+|.+++
T Consensus        72 ~~d~vi~~a~~~~~~----------~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~~~~~~y~~sK~~~e  138 (299)
T 2wm3_A           72 GAYATFIVTNYWESC----------SQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVE  138 (299)
T ss_dssp             TCSEEEECCCHHHHT----------CHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTTSCCCHHHHHHHHHH
T ss_pred             cCCEEEEeCCCCccc----------cchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCCcccCchhhHHHHHH
Confidence            589999999864210          12345555555555543321111   22222111   112356888888776

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.21  E-value=3.1e-12  Score=115.36  Aligned_cols=101  Identities=10%  Similarity=-0.016  Sum_probs=77.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|++++||||||+|+||.++++.|+++|+      +..             .....+..+.+|++|.+++.++++..   
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~-------------~~~~~~~~~~~D~~d~~~~~~~~~~~---   60 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPG-------------EDWVFVSSKDADLTDTAQTRALFEKV---   60 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTT-------------CEEEECCTTTCCTTSHHHHHHHHHHS---
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCC------ccc-------------ccccccCceecccCCHHHHHHHHhhc---
Confidence            46789999999999999999999999997      110             00113334578999999988888753   


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                        ++|+|||+||.... ...+.++....+++|+.|+.++++++...
T Consensus        61 --~~d~Vih~A~~~~~-~~~~~~~~~~~~~~nv~gt~~ll~a~~~~  103 (319)
T 4b8w_A           61 --QPTHVIHLAAMVGG-LFRNIKYNLDFWRKNVHMNDNVLHSAFEV  103 (319)
T ss_dssp             --CCSEEEECCCCCCC-HHHHTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --CCCEEEECceeccc-ccccccCHHHHHHHHHHHHHHHHHHHHHc
Confidence              69999999998531 11233456788999999999999988654

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}

Probab=99.20  E-value=1.7e-11  Score=80.48  Aligned_cols=47  Identities=38%  Similarity=0.854  Sum_probs=40.9

Q ss_pred             CccccccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchhhcc
Q psy4246          49 GVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEE   95 (328)
Q Consensus        49 ~~~~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~~~~   95 (328)
                      ++.+...++||.||++.++.+|+.||+||.++.++|++|++....++
T Consensus         3 g~~~~~~~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~~~~~~   49 (54)
T 1wmv_A            3 AKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDD   49 (54)
T ss_dssp             CTTCCCSSCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSSCCCCC
T ss_pred             CcccCcCCCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCcccccc
Confidence            45566677899999999999999999999999999999998766543

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.19  E-value=1.8e-11  Score=113.02  Aligned_cols=126  Identities=13%  Similarity=0.012  Sum_probs=86.3

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcc-cCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELN-LCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-ls~~~~v~~~~~~~~~~  199 (328)
                      +.+++++||||+|+||.++++.|+++|++|++++|+.+...  ...+..   ..++.++.+| ++|.+++.++++     
T Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~---~~~v~~v~~D~l~d~~~l~~~~~-----   72 (352)
T 1xgk_A            3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA---IPNVTLFQGPLLNNVPLMDTLFE-----   72 (352)
T ss_dssp             CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT---STTEEEEESCCTTCHHHHHHHHT-----
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhh---cCCcEEEECCccCCHHHHHHHHh-----
Confidence            45688999999999999999999999999999999876542  122322   2357889999 999998887764     


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH-Hhc----cccc-eecccccchhhhccCcccc
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL-IKG----AKLF-ARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~-~~~----ss~~-~~~~~~~~~~y~ask~al~  272 (328)
                        .+|+||+|++...             .+.|..+ .++++++...- .+.    ||.. ...+......|..+|.+.+
T Consensus        73 --~~d~Vi~~a~~~~-------------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~sK~~~E  135 (352)
T 1xgk_A           73 --GAHLAFINTTSQA-------------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVE  135 (352)
T ss_dssp             --TCSEEEECCCSTT-------------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHH
T ss_pred             --cCCEEEEcCCCCC-------------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHHHHHHH
Confidence              5899999997542             1235555 55555554321 111    3322 1222234567889998766

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.19  E-value=2.5e-11  Score=111.99  Aligned_cols=103  Identities=11%  Similarity=0.001  Sum_probs=84.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCC-----CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHG-----CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~G-----a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +|++|||||+|+||.+++++|+++|     ++|++++|+.....         ....++.++.+|++|.+++.++++.+ 
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~-   70 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW---------HEDNPINYVQCDISDPDDSQAKLSPL-   70 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC---------CCSSCCEEEECCTTSHHHHHHHHTTC-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc---------cccCceEEEEeecCCHHHHHHHHhcC-
Confidence            4689999999999999999999999     99999999865422         11346888999999999887766532 


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                         +++|+|||+||...       ++.+..+++|+.++.++++++.+.
T Consensus        71 ---~~~d~vih~a~~~~-------~~~~~~~~~n~~~~~~l~~a~~~~  108 (364)
T 2v6g_A           71 ---TDVTHVFYVTWANR-------STEQENCEANSKMFRNVLDAVIPN  108 (364)
T ss_dssp             ---TTCCEEEECCCCCC-------SSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ---CCCCEEEECCCCCc-------chHHHHHHHhHHHHHHHHHHHHHh
Confidence               34999999999752       346788999999999999999764

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=99.18  E-value=2.7e-11  Score=104.06  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=61.3

Q ss_pred             CCCCceEEEcCC----------------CCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEccc
Q psy4246         120 DLSNYNAIVTGA----------------NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNL  183 (328)
Q Consensus       120 ~l~~k~~lITGa----------------s~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl  183 (328)
                      +|+||++|||||                +||||+++|+.|+++|++|++++++.. +.         .+. .+  -.+|+
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~---------~~~-g~--~~~dv   71 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP---------TPP-FV--KRVDV   71 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC---------CCT-TE--EEEEC
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc---------cCC-CC--eEEcc
Confidence            589999999999                588999999999999999999987642 10         011 12  24677


Q ss_pred             CCHHHHHHHHHHHHHhcCCccEEEEccccC
Q psy4246         184 CRLKSVKKFAEEYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       184 s~~~~v~~~~~~~~~~~g~id~lvnnAg~~  213 (328)
                      ++.   +++++.+.+.++++|+||||||+.
T Consensus        72 ~~~---~~~~~~v~~~~~~~Dili~~Aav~   98 (226)
T 1u7z_A           72 MTA---LEMEAAVNASVQQQNIFIGCAAVA   98 (226)
T ss_dssp             CSH---HHHHHHHHHHGGGCSEEEECCBCC
T ss_pred             CcH---HHHHHHHHHhcCCCCEEEECCccc
Confidence            664   556777788899999999999984

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.16  E-value=3.1e-11  Score=109.60  Aligned_cols=80  Identities=11%  Similarity=0.069  Sum_probs=63.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-h----HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSL-D----KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~----~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++||||+|+||.++++.|+++|++|++++|+. .    ...+...++..    ..+.++.+|++|.+++.++++   
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~----~~v~~v~~D~~d~~~l~~a~~---   76 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRS----MGVTIIEGEMEEHEKMVSVLK---   76 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHH----TTCEEEECCTTCHHHHHHHHT---
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhc----CCcEEEEecCCCHHHHHHHHc---
Confidence            35799999999999999999999999999999985 1    11222222322    257889999999998887765   


Q ss_pred             HhcCCccEEEEccccC
Q psy4246         198 KKFRSLNILVLNAGVF  213 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~  213 (328)
                          ++|+|||+||..
T Consensus        77 ----~~d~vi~~a~~~   88 (321)
T 3c1o_A           77 ----QVDIVISALPFP   88 (321)
T ss_dssp             ----TCSEEEECCCGG
T ss_pred             ----CCCEEEECCCcc
Confidence                589999999964

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.15  E-value=5.5e-13  Score=120.84  Aligned_cols=136  Identities=14%  Similarity=-0.021  Sum_probs=83.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++.+++||||||+|+||.+++++|+++|++|++++|+..........+.......++.++.+|++               
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---------------   68 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS---------------   68 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT---------------
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc---------------
Confidence            45678999999999999999999999999999999976410000000100000123444555554               


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccc--eec---------ccccchhh
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLF--ARQ---------QGAATSIY  264 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~--~~~---------~~~~~~~y  264 (328)
                        ++|+|||+||.....  ...+.....++ |+.++.++++++...-.+.    ||..  +..         +......|
T Consensus        69 --~~d~vi~~a~~~~~~--~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~~~~p~~~Y  143 (321)
T 3vps_A           69 --DVRLVYHLASHKSVP--RSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPY  143 (321)
T ss_dssp             --TEEEEEECCCCCCHH--HHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHH
T ss_pred             --cCCEEEECCccCChH--HHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCCCCCCCChh
Confidence              799999999975321  01112234456 9999999999987653222    3332  111         11235779


Q ss_pred             hccCccccCCCC
Q psy4246         265 CATSLDLSLPVS  276 (328)
Q Consensus       265 ~ask~al~~~~~  276 (328)
                      +.+|.+.+ .+.
T Consensus       144 ~~sK~~~E-~~~  154 (321)
T 3vps_A          144 AASKVGLE-MVA  154 (321)
T ss_dssp             HHHHHHHH-HHH
T ss_pred             HHHHHHHH-HHH
Confidence            99998877 443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.15  E-value=1.5e-10  Score=106.37  Aligned_cols=98  Identities=16%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh----hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL----DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~----~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |..++||||||+|+||.++++.|+++|++|++++|+.    ++.. ....+.    ..++.++.+|++|.+++.+++++.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~-~~~~l~----~~~v~~~~~Dl~d~~~l~~~~~~~   82 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAK-IFKALE----DKGAIIVYGLINEQEAMEKILKEH   82 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-HHHHHH----HTTCEEEECCTTCHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHH-HHHHHH----hCCcEEEEeecCCHHHHHHHHhhC
Confidence            4567899999999999999999999999999999976    2222 222332    236788999999999988888753


Q ss_pred             HHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         197 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                           ++|+|||+||..                 |+.+..++++++...
T Consensus        83 -----~~d~Vi~~a~~~-----------------n~~~~~~l~~aa~~~  109 (346)
T 3i6i_A           83 -----EIDIVVSTVGGE-----------------SILDQIALVKAMKAV  109 (346)
T ss_dssp             -----TCCEEEECCCGG-----------------GGGGHHHHHHHHHHH
T ss_pred             -----CCCEEEECCchh-----------------hHHHHHHHHHHHHHc
Confidence                 799999999972                 677777777766543

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}

Probab=99.12  E-value=4.5e-11  Score=72.78  Aligned_cols=34  Identities=38%  Similarity=0.926  Sum_probs=32.3

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      .+||.||++..+.+|+.||+||.++.++|++||+
T Consensus         5 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Prl   38 (38)
T 2law_A            5 GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL   38 (38)
T ss_dssp             CCCSSSCCEEEETTTEEEEEETTTTEEESSCTTC
T ss_pred             CCCCCCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence            4799999999999999999999999999999985

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.09  E-value=4.4e-11  Score=106.59  Aligned_cols=119  Identities=13%  Similarity=0.069  Sum_probs=81.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHC--CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         125 NAIVTGANTGIGFETARSLALH--GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~--Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      ++|||||+|+||.++++.|+++  |++|++++|+.++...+.    .    ..+.++.+|++|.+++.++++       +
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~~~~~~~~~-------~   65 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA----A----QGITVRQADYGDEAALTSALQ-------G   65 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHH----H----TTCEEEECCTTCHHHHHHHTT-------T
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhh----c----CCCeEEEcCCCCHHHHHHHHh-------C
Confidence            3899999999999999999999  999999999876544321    1    246788999999988877654       5


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCccccCCCC
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLSLPVS  276 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~~~~~  276 (328)
                      +|+|||+||...              ..|+.++.++++++...-.+.    ||..+.   .....|+.+|.+.+ .+.
T Consensus        66 ~d~vi~~a~~~~--------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~---~~~~~y~~sK~~~e-~~~  125 (286)
T 2zcu_A           66 VEKLLLISSSEV--------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHAD---TSPLGLADEHIETE-KML  125 (286)
T ss_dssp             CSEEEECC----------------------CHHHHHHHHHHHHTCCEEEEEEETTTT---TCCSTTHHHHHHHH-HHH
T ss_pred             CCEEEEeCCCCc--------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCC---CCcchhHHHHHHHH-HHH
Confidence            899999999521              136667777776665432111    332221   22357999999887 443

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.08  E-value=7.1e-10  Score=100.07  Aligned_cols=80  Identities=11%  Similarity=0.064  Sum_probs=63.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-----hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSL-----DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-----~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++||||+|+||.++++.|+++|++|++++|+.     ++.+. ...+.    ...+.++.+|++|++++.++++   
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~-~~~~~----~~~~~~~~~D~~d~~~l~~~~~---   75 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQM-LLYFK----QLGAKLIEASLDDHQRLVDALK---   75 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHH-HHHHH----TTTCEEECCCSSCHHHHHHHHT---
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHH-HHHHH----hCCeEEEeCCCCCHHHHHHHHh---
Confidence            46799999999999999999999999999999984     23222 22232    2357889999999998877764   


Q ss_pred             HhcCCccEEEEccccCC
Q psy4246         198 KKFRSLNILVLNAGVFG  214 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~  214 (328)
                          ++|+|||+||...
T Consensus        76 ----~~d~vi~~a~~~~   88 (313)
T 1qyd_A           76 ----QVDVVISALAGGV   88 (313)
T ss_dssp             ----TCSEEEECCCCSS
T ss_pred             ----CCCEEEECCcccc
Confidence                5999999999753

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=99.07  E-value=6.7e-11  Score=75.85  Aligned_cols=34  Identities=35%  Similarity=0.772  Sum_probs=31.3

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      ..+||+||+++.+..| .||+||.|++|||++|..
T Consensus        17 ~~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~   50 (55)
T 2e45_A           17 DSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR   50 (55)
T ss_dssp             CSCCCTTEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred             CCCCCCCCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence            3559999999999999 999999999999999964

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A

Probab=99.07  E-value=9.8e-11  Score=72.75  Aligned_cols=36  Identities=36%  Similarity=0.813  Sum_probs=33.4

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccc
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      ..+||.||++..+.+|+.||+||.++.++|++|++.
T Consensus         5 ~~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~~   40 (42)
T 2djy_A            5 SGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS   40 (42)
T ss_dssp             CSCCCSSEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred             cCCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence            457999999999999999999999999999999864

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=99.06  E-value=7e-11  Score=86.40  Aligned_cols=35  Identities=49%  Similarity=0.915  Sum_probs=32.8

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      ..+||.|||++.+.+|++|||||+||+|+|++||.
T Consensus        54 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Prl   88 (88)
T 1tk7_A           54 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP   88 (88)
T ss_dssp             SCSSCSSCEEEEETTTEEEEEETTTTEEESSSSCC
T ss_pred             ccccCCceEEEECCCCCEEEEECCCCcEeCCCCCC
Confidence            46799999999999999999999999999999974

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.05  E-value=1.2e-10  Score=71.75  Aligned_cols=34  Identities=38%  Similarity=0.726  Sum_probs=32.3

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      .+||.||++.++.+|+.||+||.++.++|++|++
T Consensus         6 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~   39 (40)
T 2ysf_A            6 SGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT   39 (40)
T ss_dssp             CCCCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred             CCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence            4799999999999999999999999999999985

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.05  E-value=1.3e-10  Score=71.61  Aligned_cols=34  Identities=32%  Similarity=0.682  Sum_probs=32.3

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      .+||.||++..+.+|+.||+||.++.++|++|++
T Consensus         6 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~~   39 (40)
T 2ysg_A            6 SGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM   39 (40)
T ss_dssp             SCCCTTEEEEECSSSCEEEEESSSCCEECCCCCC
T ss_pred             CCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCCC
Confidence            4799999999999999999999999999999985

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=99.05  E-value=9.1e-11  Score=86.16  Aligned_cols=36  Identities=53%  Similarity=0.925  Sum_probs=33.5

Q ss_pred             CCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        14 ~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ..+||.|||++.+.+|++|||||+||+|+|++|+..
T Consensus        53 ~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~~   88 (90)
T 2kxq_A           53 LGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS   88 (90)
T ss_dssp             TCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred             ccccCCCceEEECCCCCEEEEECCCCcEecCCCCcC
Confidence            457999999999999999999999999999999864

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*

Probab=99.05  E-value=1.2e-10  Score=75.15  Aligned_cols=41  Identities=32%  Similarity=0.628  Sum_probs=32.9

Q ss_pred             ccccCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchh
Q psy4246          52 KKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFA   92 (328)
Q Consensus        52 ~~~~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~   92 (328)
                      +.....||.||++..+.+|+.||+||.++.++|++|+..++
T Consensus         7 ~~~~~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~~p   47 (49)
T 2kpz_A            7 EIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIP   47 (49)
T ss_dssp             -----CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC--
T ss_pred             cccCCCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCCCC
Confidence            34456899999999999999999999999999999997653

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.04  E-value=7.4e-10  Score=100.35  Aligned_cols=79  Identities=9%  Similarity=0.119  Sum_probs=63.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||+|+||.++++.|+++|++|++++|+.........++..    ..+.++.+|++|.+++.++++       ++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~----~~v~~v~~Dl~d~~~l~~a~~-------~~   80 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS----LGAIIVKGELDEHEKLVELMK-------KV   80 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH----TTCEEEECCTTCHHHHHHHHT-------TC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc----CCCEEEEecCCCHHHHHHHHc-------CC
Confidence            5799999999999999999999999999999987522222223322    247789999999998877765       58


Q ss_pred             cEEEEccccC
Q psy4246         204 NILVLNAGVF  213 (328)
Q Consensus       204 d~lvnnAg~~  213 (328)
                      |+|||+||..
T Consensus        81 d~vi~~a~~~   90 (318)
T 2r6j_A           81 DVVISALAFP   90 (318)
T ss_dssp             SEEEECCCGG
T ss_pred             CEEEECCchh
Confidence            9999999863

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}

Probab=99.04  E-value=1.6e-10  Score=69.61  Aligned_cols=34  Identities=26%  Similarity=0.636  Sum_probs=32.0

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      .+||.||++..+.+|+.||+||.++.++|++|++
T Consensus         3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~l   36 (36)
T 1wr3_A            3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL   36 (36)
T ss_dssp             SCSCTTEEEEECSSSCEEEEETTTCCEESSCSCC
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEeeeCcCC
Confidence            4699999999999999999999999999999974

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}

Probab=99.04  E-value=2.2e-10  Score=72.64  Aligned_cols=37  Identities=35%  Similarity=0.820  Sum_probs=33.9

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccch
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVF   91 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~   91 (328)
                      ..+||.||++.++.+|++||+||.++.++|++|++.+
T Consensus         9 ~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~~~   45 (46)
T 2l4j_A            9 SGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLET   45 (46)
T ss_dssp             TSCCCTTCEEEECTTSCEEEEETTTTEEECSCCSSCC
T ss_pred             CCCCCcCceeEECCCCCEEEEECCCCCEeCCCCCcCC
Confidence            3579999999999999999999999999999999753

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}

Probab=99.03  E-value=1.5e-10  Score=73.44  Aligned_cols=36  Identities=28%  Similarity=0.514  Sum_probs=33.6

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCccch
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVF   91 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~   91 (328)
                      ..||.||++.++.+|++||+||.++.++|++|+..+
T Consensus         9 ~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~~~   44 (46)
T 2ez5_W            9 EPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGR   44 (46)
T ss_dssp             CCCCTTEEEEECTTSSEEEEETTTTEEESBCTTTCC
T ss_pred             CCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCCCC
Confidence            469999999999999999999999999999999764

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.03  E-value=1.3e-10  Score=112.43  Aligned_cols=109  Identities=10%  Similarity=-0.016  Sum_probs=81.9

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH---HHHHHHHHHhh-------CCCCeEEEEEcccCCHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK---ANDAISKILTE-------KPSAQCIAMELNLCRLKSVKKF  192 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~---~~~~~~~l~~~-------~~~~~~~~~~~Dls~~~~v~~~  192 (328)
                      .++||||||+|+||.+++++|.+.|++|+++.|+...   ...+...+...       ....++.++.+|+++++++.  
T Consensus       150 ~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~--  227 (508)
T 4f6l_B          150 LGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV--  227 (508)
T ss_dssp             CEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC--
T ss_pred             CCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC--
Confidence            5799999999999999999999999999999998763   22232222211       01358999999999988776  


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         193 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       193 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                            ...++|+||||||...     ....+...+++|+.|+.++++++..
T Consensus       228 ------~~~~~D~Vih~Aa~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~  268 (508)
T 4f6l_B          228 ------LPENMDTIIHAGARTD-----HFGDDDEFEKVNVQGTVDVIRLAQQ  268 (508)
T ss_dssp             ------CSSCCSEEEECCCC-------------CCHHHHHHHHHHHHHHHHT
T ss_pred             ------CccCCCEEEECCceec-----CCCCHHHHhhhHHHHHHHHHHHHHh
Confidence                  4468999999999763     1235677889999999999999876

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.02  E-value=4.1e-10  Score=100.58  Aligned_cols=74  Identities=15%  Similarity=0.238  Sum_probs=62.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         125 NAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      +||||||+|+||.++++.|++. |++|++++|+.++....    .    ..++.++.+|++|++++.++++       ++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~----~----~~~v~~~~~D~~d~~~l~~~~~-------~~   66 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD----W----RGKVSVRQLDYFNQESMVEAFK-------GM   66 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG----G----BTTBEEEECCTTCHHHHHHHTT-------TC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh----h----hCCCEEEEcCCCCHHHHHHHHh-------CC
Confidence            4999999999999999999998 99999999998754321    1    2468899999999988877664       68


Q ss_pred             cEEEEccccC
Q psy4246         204 NILVLNAGVF  213 (328)
Q Consensus       204 d~lvnnAg~~  213 (328)
                      |+||||||..
T Consensus        67 d~vi~~a~~~   76 (289)
T 3e48_A           67 DTVVFIPSII   76 (289)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEEeCCCC
Confidence            9999999975

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.02  E-value=1.5e-09  Score=97.67  Aligned_cols=80  Identities=13%  Similarity=0.159  Sum_probs=62.9

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-----HHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-----ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-----~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++||||+|+||.++++.|+++|++|++++|+...     .......+.    ...+.++.+|++|.+++.++++   
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~----~~~v~~v~~D~~d~~~l~~~~~---   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK----ASGANIVHGSIDDHASLVEAVK---   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH----TTTCEEECCCTTCHHHHHHHHH---
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH----hCCCEEEEeccCCHHHHHHHHc---
Confidence            4679999999999999999999999999999997431     111122222    2357889999999998887765   


Q ss_pred             HhcCCccEEEEccccC
Q psy4246         198 KKFRSLNILVLNAGVF  213 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~  213 (328)
                          ++|+|||+||..
T Consensus        77 ----~~d~vi~~a~~~   88 (308)
T 1qyc_A           77 ----NVDVVISTVGSL   88 (308)
T ss_dssp             ----TCSEEEECCCGG
T ss_pred             ----CCCEEEECCcch
Confidence                589999999863

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}

Probab=99.01  E-value=2.6e-10  Score=69.92  Aligned_cols=35  Identities=34%  Similarity=0.723  Sum_probs=32.7

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      .+.||.||++..+.+|+.||+||.++.++|++|++
T Consensus         4 ~~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~~   38 (39)
T 2kyk_A            4 MGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL   38 (39)
T ss_dssp             SCCCCSSCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence            35799999999999999999999999999999985

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A

Probab=99.01  E-value=2.1e-10  Score=74.84  Aligned_cols=37  Identities=35%  Similarity=0.624  Sum_probs=34.1

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccch
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVF   91 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~   91 (328)
                      ..+||.||++.++.+|+.||+||.++.++|++|+..+
T Consensus        16 ~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~~   52 (53)
T 2jmf_A           16 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGA   52 (53)
T ss_dssp             CSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCSSC
T ss_pred             CCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCCC
Confidence            3579999999999999999999999999999999754

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}

Probab=99.00  E-value=2.3e-10  Score=73.35  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=32.8

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCccc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      ..||.||++..+.+|++||+||.+++++|++|+..
T Consensus        12 ~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~   46 (49)
T 2zaj_A           12 LELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP   46 (49)
T ss_dssp             SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred             CCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence            57999999999999999999999999999999864

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}

Probab=99.00  E-value=2.9e-10  Score=70.46  Aligned_cols=35  Identities=34%  Similarity=0.756  Sum_probs=32.7

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      ...||.||++..+.+|+.||+||.++.++|++|++
T Consensus         6 ~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr~   40 (41)
T 1wr7_A            6 QSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL   40 (41)
T ss_dssp             CCSSCTTEEEEECTTSCEEEEETTTTEEESSCGGG
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCCC
Confidence            35799999999999999999999999999999985

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*

Probab=98.97  E-value=4.2e-10  Score=67.80  Aligned_cols=34  Identities=29%  Similarity=0.665  Sum_probs=31.9

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      ..||.||++..+.+|+.||+||.++.++|++|++
T Consensus         3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~~   36 (36)
T 1wr4_A            3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM   36 (36)
T ss_dssp             TTCCTTEEEEECSSSCEEEEETTTTEEESSCCCC
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEeCcCCCC
Confidence            4699999999999999999999999999999974

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=98.96  E-value=8.9e-10  Score=89.82  Aligned_cols=78  Identities=10%  Similarity=0.087  Sum_probs=63.8

Q ss_pred             CCccHHHHHHHHHCCCeEEEeeCChhHHH---HHHHHHHhhCCCCeEEEEEcccCCH--HHHHHHHHHHHHhcCCccEEE
Q psy4246         133 TGIGFETARSLALHGCRVILACRSLDKAN---DAISKILTEKPSAQCIAMELNLCRL--KSVKKFAEEYQKKFRSLNILV  207 (328)
Q Consensus       133 ~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~---~~~~~l~~~~~~~~~~~~~~Dls~~--~~v~~~~~~~~~~~g~id~lv  207 (328)
                      +-++.++++.|+++|++|++..|+.....   +..+.+...  |.++..+.+|++++  ++++++++.+.+.+|+ |+||
T Consensus        26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~--G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLV  102 (157)
T 3gxh_A           26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA--GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLV  102 (157)
T ss_dssp             BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT--TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEE
T ss_pred             CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc--CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEE
Confidence            45899999999999999999988654322   123333333  67899999999999  9999999999999999 9999


Q ss_pred             EccccC
Q psy4246         208 LNAGVF  213 (328)
Q Consensus       208 nnAg~~  213 (328)
                      ||||+.
T Consensus       103 nnAgg~  108 (157)
T 3gxh_A          103 HCLANY  108 (157)
T ss_dssp             ECSBSH
T ss_pred             ECCCCC
Confidence            999963

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=3.1e-10  Score=75.73  Aligned_cols=38  Identities=24%  Similarity=0.401  Sum_probs=35.0

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchhh
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAK   93 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~~   93 (328)
                      .+||.||++..+.+|++|||||.+++++|++|+..+..
T Consensus        12 ~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~~~~   49 (60)
T 2yse_A           12 LELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKR   49 (60)
T ss_dssp             SSCCSSEEEEECSSSCEEEEETTTTEEESSCHHHHHHH
T ss_pred             CCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCchhhh
Confidence            47999999999999999999999999999999987554

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.94  E-value=3.3e-10  Score=97.55  Aligned_cols=78  Identities=17%  Similarity=0.229  Sum_probs=59.1

Q ss_pred             CCceEEEcCC----------------CCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC
Q psy4246         122 SNYNAIVTGA----------------NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR  185 (328)
Q Consensus       122 ~~k~~lITGa----------------s~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~  185 (328)
                      +||++|||||                +|++|.++|+.|+++||+|++++|+... .       ... ...+     |+.+
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~-~-------~~~-~~~~-----~~~~   67 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRAL-K-------PEP-HPNL-----SIRE   67 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSC-C-------CCC-CTTE-----EEEE
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccc-c-------ccC-CCCe-----EEEE
Confidence            5899999999                6779999999999999999999987531 0       000 1123     2333


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccC
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnAg~~  213 (328)
                      .++++++++.+.+.++++|+||+|||+.
T Consensus        68 v~s~~em~~~v~~~~~~~Dili~aAAvs   95 (232)
T 2gk4_A           68 ITNTKDLLIEMQERVQDYQVLIHSMAVS   95 (232)
T ss_dssp             CCSHHHHHHHHHHHGGGCSEEEECSBCC
T ss_pred             HhHHHHHHHHHHHhcCCCCEEEEcCccc
Confidence            3467778888888889999999999974

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*

Probab=98.93  E-value=5.6e-10  Score=72.08  Aligned_cols=37  Identities=35%  Similarity=0.750  Sum_probs=33.6

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccch
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVF   91 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~   91 (328)
                      ...||.||++..+.+|+.||+||.++.++|++|+...
T Consensus         9 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~~   45 (50)
T 1i5h_W            9 LGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQN   45 (50)
T ss_dssp             CSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTSC
T ss_pred             CCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCCc
Confidence            3579999999999999999999999999999998653

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=98.93  E-value=7e-10  Score=73.46  Aligned_cols=38  Identities=32%  Similarity=0.691  Sum_probs=34.7

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchh
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFA   92 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~   92 (328)
                      ..+||.||++.++.+|++||+||.++.++|++|+....
T Consensus        12 ~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~~~   49 (57)
T 2ysd_A           12 LGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNK   49 (57)
T ss_dssp             CCSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTCSS
T ss_pred             CCCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCccc
Confidence            45799999999999999999999999999999997654

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1

Probab=98.92  E-value=8.3e-10  Score=66.90  Aligned_cols=34  Identities=41%  Similarity=0.879  Sum_probs=31.9

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      ..||.||++..+.+|+.||+||.++.++|++|+.
T Consensus         2 ~~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~   35 (37)
T 1e0m_A            2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM   35 (37)
T ss_dssp             CCSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred             CCCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence            3699999999999999999999999999999985

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=98.91  E-value=2.9e-10  Score=99.54  Aligned_cols=35  Identities=31%  Similarity=0.770  Sum_probs=33.2

Q ss_pred             CCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          15 DELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        15 ~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      .+||+|||++++++|++||+||+|++|||.||+..
T Consensus        10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~   44 (261)
T 1eg3_A           10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMT   44 (261)
T ss_dssp             TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHHH
T ss_pred             CCCCCCcceeECCCCCeEeecCCcccccCCCCchh
Confidence            67999999999999999999999999999999864

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.91  E-value=2.2e-09  Score=104.07  Aligned_cols=95  Identities=18%  Similarity=0.121  Sum_probs=74.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +++||||||+|+||.++++.|+++|++|++++|+....                ..+.+|+.+..         .+.+.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~----------------~~v~~d~~~~~---------~~~l~~  201 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP----------------GKRFWDPLNPA---------SDLLDG  201 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT----------------TCEECCTTSCC---------TTTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc----------------cceeecccchh---------HHhcCC
Confidence            67899999999999999999999999999999986531                11567876431         223458


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHH
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLE  243 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  243 (328)
                      +|+|||+||..... ..+.+.....+++|+.|+.++++++.
T Consensus       202 ~D~Vih~A~~~~~~-~~~~~~~~~~~~~Nv~gt~~ll~a~a  241 (516)
T 3oh8_A          202 ADVLVHLAGEPIFG-RFNDSHKEAIRESRVLPTKFLAELVA  241 (516)
T ss_dssp             CSEEEECCCC------CCGGGHHHHHHHTHHHHHHHHHHHH
T ss_pred             CCEEEECCCCcccc-ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999975322 55677888999999999999999753

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1

Probab=98.90  E-value=1e-09  Score=70.42  Aligned_cols=35  Identities=20%  Similarity=0.444  Sum_probs=32.8

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCccc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      .+||.||++.++.+|++||+||.++.++|++|+..
T Consensus        10 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~   44 (49)
T 2ysb_A           10 LPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES   44 (49)
T ss_dssp             CCCCTTEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCCCceEEECCCCCEEEEEcCCCCEEecCCCCC
Confidence            46999999999999999999999999999999864

>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}

Probab=98.89  E-value=3.3e-10  Score=73.65  Aligned_cols=35  Identities=29%  Similarity=0.624  Sum_probs=32.0

Q ss_pred             CCCCccccceec-CCCcEEEEeCcCCccccCCCCCC
Q psy4246          15 DELPPGWEERVT-ADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        15 ~~lp~~w~~~~~-~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ..||.||+++++ .+|++||+|+.|++|||++|+..
T Consensus         9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~   44 (52)
T 2jx8_A            9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG   44 (52)
T ss_dssp             HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred             CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence            459999999998 68999999999999999999875

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=1.2e-09  Score=68.41  Aligned_cols=35  Identities=26%  Similarity=0.590  Sum_probs=32.5

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCccc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      ..||.||++..+.+|+.||+||.+++++|++|+..
T Consensus         6 ~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~~   40 (43)
T 2dmv_A            6 SGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP   40 (43)
T ss_dssp             CSCCTTEEEEECTTSCEEEEETTTCCEESSCSSSC
T ss_pred             CCCCCCceEEECCCCCEEEEECCCCCEecCCcCCC
Confidence            46999999999999999999999999999999853

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=98.89  E-value=1.1e-09  Score=68.62  Aligned_cols=34  Identities=35%  Similarity=0.796  Sum_probs=31.8

Q ss_pred             CCCCCCeeeeeCCCcEEEEeccCcccccCCCccc
Q psy4246          57 DLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        57 ~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      .||.||++..+.+|+.||+|+.++.++|++|+..
T Consensus         8 ~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~   41 (43)
T 1ymz_A            8 PLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII   41 (43)
T ss_dssp             CCCSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred             CCCCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence            5899999999999999999999999999999854

>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1

Probab=98.88  E-value=1.9e-09  Score=66.13  Aligned_cols=36  Identities=36%  Similarity=0.616  Sum_probs=32.6

Q ss_pred             CCCCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        13 ~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      ...++|.+|++..+++|+.||+|..|++++|++|..
T Consensus         4 ~~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~   39 (40)
T 2ysi_A            4 GSSGTEEIWVENKTPDGKVYYYNARTRESAWTKPDG   39 (40)
T ss_dssp             CCCCCCCSEEEEECTTSCEEEEETTTCCEESSCCSC
T ss_pred             ccCCCCCCCEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence            445689999999999999999999999999999974

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=98.85  E-value=1e-09  Score=89.99  Aligned_cols=36  Identities=47%  Similarity=1.095  Sum_probs=29.4

Q ss_pred             CCCCCccccceec-CCCcEEEEeCcCCccccCCCCCC
Q psy4246          14 EDELPPGWEERVT-ADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        14 ~~~lp~~w~~~~~-~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      .++||+|||++++ ..|++||+||+|++|||++|+..
T Consensus         7 ~~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~   43 (166)
T 3tc5_A            7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN   43 (166)
T ss_dssp             ---CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred             CCCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence            4679999999999 69999999999999999999753

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=98.85  E-value=8.8e-10  Score=103.71  Aligned_cols=41  Identities=39%  Similarity=0.796  Sum_probs=35.7

Q ss_pred             CCCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCCc
Q psy4246          10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGV   50 (328)
Q Consensus        10 ~~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~   50 (328)
                      +.+..++||+|||++++++|++||+||+||+|||+|||...
T Consensus         2 ~~~~~~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~~   42 (429)
T 3olm_A            2 NASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPS   42 (429)
T ss_dssp             ---CCCCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTSCC
T ss_pred             CCccCCCCCCCceeEECCCCCeEEEeCCCcceeccCCCCCc
Confidence            34567899999999999999999999999999999999754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.83  E-value=1.1e-08  Score=78.24  Aligned_cols=75  Identities=17%  Similarity=0.111  Sum_probs=61.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .+++++|+|+ |+||.++++.|.+.| ++|++++|+.++++...        ...+..+.+|+++.+++.++++      
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~------   68 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--------RMGVATKQVDAKDEAGLAKALG------   68 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--------TTTCEEEECCTTCHHHHHHHTT------
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--------hCCCcEEEecCCCHHHHHHHHc------
Confidence            3578999999 999999999999999 89999999987765543        1245678899999887766653      


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                       ++|++|++++.
T Consensus        69 -~~d~vi~~~~~   79 (118)
T 3ic5_A           69 -GFDAVISAAPF   79 (118)
T ss_dssp             -TCSEEEECSCG
T ss_pred             -CCCEEEECCCc
Confidence             79999999974

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.80  E-value=8.4e-10  Score=102.23  Aligned_cols=107  Identities=16%  Similarity=0.044  Sum_probs=78.2

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      +||||||+|+||.+++++|+++|+ +|+.++|+                           +|.++++++++       ++
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~---------------------------~d~~~l~~~~~-------~~   47 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ---------------------------TKEEELESALL-------KA   47 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT---------------------------CCHHHHHHHHH-------HC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC---------------------------CCHHHHHHHhc-------cC
Confidence            599999999999999999999998 88777664                           56777777765       48


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcccc--ceecccccchhhhccCcccc
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL--FARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~--~~~~~~~~~~~y~ask~al~  272 (328)
                      |+|||+||...+      ++....+++|+.++.++++++...-.+. .+  .+.....+...|+.+|.+.+
T Consensus        48 d~Vih~a~~~~~------~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~~v~~Ss~~~~~~~~Y~~sK~~~E  111 (369)
T 3st7_A           48 DFIVHLAGVNRP------EHDKEFSLGNVSYLDHVLDILTRNTKKP-AILLSSSIQATQDNPYGESKLQGE  111 (369)
T ss_dssp             SEEEECCCSBCT------TCSTTCSSSCCBHHHHHHHHHTTCSSCC-EEEEEEEGGGGSCSHHHHHHHHHH
T ss_pred             CEEEECCcCCCC------CCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCchhhcCCCCchHHHHHHH
Confidence            999999998642      2345578899999999998875432110 11  11111223678999998877

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.79  E-value=2.4e-08  Score=93.80  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=70.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCC---CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHG---CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~G---a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ++++|+|| ||||+++++.|+++|   .+|++++|+.++++++.+++.... +.++..+.+|++|.+++++++++.    
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~----   75 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEV----   75 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHH----
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhh----
Confidence            46889999 899999999999998   489999999999888888776532 346888999999999999998876    


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                       ++|+||||||.
T Consensus        76 -~~DvVin~ag~   86 (405)
T 4ina_A           76 -KPQIVLNIALP   86 (405)
T ss_dssp             -CCSEEEECSCG
T ss_pred             -CCCEEEECCCc
Confidence             69999999985

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=98.78  E-value=4.8e-09  Score=64.60  Aligned_cols=34  Identities=29%  Similarity=0.603  Sum_probs=31.9

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      ..||.||++..+.+|+.||+|+.+++++|++|+.
T Consensus         6 ~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~   39 (40)
T 2ysh_A            6 SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS   39 (40)
T ss_dssp             SSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred             CCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence            4699999999999999999999999999999974

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=98.77  E-value=1.9e-09  Score=76.34  Aligned_cols=34  Identities=44%  Similarity=0.698  Sum_probs=31.6

Q ss_pred             CCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          16 ELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        16 ~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      .||.+|++..+.+|++||+||+|++|+|++|+..
T Consensus        40 ~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~~   73 (75)
T 1o6w_A           40 LRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE   73 (75)
T ss_dssp             HHHHTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred             CCCCeEEEEECCCCCEEEEECCCCCEECCCCCCC
Confidence            3788999999999999999999999999999874

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A

Probab=98.76  E-value=5.5e-09  Score=63.05  Aligned_cols=34  Identities=24%  Similarity=0.549  Sum_probs=30.7

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCccc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      ..||.||++..+.+| .||+||.++.+||++|+..
T Consensus         2 ~~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~~   35 (38)
T 2ho2_A            2 SDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRA   35 (38)
T ss_dssp             CCSCTTEEEEECSSC-EEEEETTTTEEESSCCCC-
T ss_pred             CcCCCCceEEEeCCC-CEEEecCCCCEeccCCCCC
Confidence            369999999999988 9999999999999999753

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*

Probab=98.73  E-value=4.7e-09  Score=66.74  Aligned_cols=36  Identities=33%  Similarity=0.601  Sum_probs=33.3

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCccch
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVF   91 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~   91 (328)
                      .+||.||++..+++|+.||+||.++.++|+||+...
T Consensus         7 ~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~~   42 (46)
T 1jmq_A            7 VPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAM   42 (46)
T ss_dssp             CCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTSS
T ss_pred             CCCCcCcEEEEcCCCceEEEEecCCceeecCCCchh
Confidence            479999999999999999999999999999999653

>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A

Probab=98.72  E-value=4.2e-09  Score=64.98  Aligned_cols=33  Identities=30%  Similarity=0.678  Sum_probs=27.5

Q ss_pred             CCCCccccceecCCCcEEEEeCcCCccccCCCC
Q psy4246          15 DELPPGWEERVTADGCVYYVNHATEGTQWTHPR   47 (328)
Q Consensus        15 ~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~   47 (328)
                      ..+|.+|++..+++|+.||+|..|+.++|++|.
T Consensus         8 ~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~   40 (41)
T 1ywi_A            8 GSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD   40 (41)
T ss_dssp             ----CCEEEEEETTTEEEEEETTTTEEEESCC-
T ss_pred             CCCCCCcEEEECCCCCEEEEECCCCCEEeCCCC
Confidence            457899999999999999999999999999995

>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A

Probab=98.71  E-value=1e-08  Score=61.80  Aligned_cols=33  Identities=36%  Similarity=0.635  Sum_probs=30.1

Q ss_pred             CCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          17 LPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        17 lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ...+|++..+++|+.||+|..|+.|+|++|...
T Consensus         4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~   36 (37)
T 1e0l_A            4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL   36 (37)
T ss_dssp             SSCSCEEEECTTSCEEEEETTTTEEESSCCSSC
T ss_pred             CCCCeEEEECCCCCEEEEECCCCCEEecCCCcc
Confidence            457899999999999999999999999999764

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.68  E-value=1.5e-08  Score=61.48  Aligned_cols=33  Identities=27%  Similarity=0.622  Sum_probs=30.2

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCc
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR   88 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~   88 (328)
                      ...||.||++..+.+| +||+|+.++.++|++|+
T Consensus         6 ~~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~   38 (39)
T 2ysc_A            6 SGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT   38 (39)
T ss_dssp             CCCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred             CCCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence            3579999999999998 69999999999999995

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=98.66  E-value=3.5e-09  Score=102.72  Aligned_cols=97  Identities=16%  Similarity=0.218  Sum_probs=65.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++++|+++|||| ||+|+++++.|++.|++|++++|+.++++++.+++     +.++.    ++.+   ++.+      .
T Consensus       361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~-----~~~~~----~~~d---l~~~------~  421 (523)
T 2o7s_A          361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAI-----GGKAL----SLTD---LDNY------H  421 (523)
T ss_dssp             -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHT-----TC-CE----ETTT---TTTC-------
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCcee----eHHH---hhhc------c
Confidence            578999999999 59999999999999999999999988877766554     22222    2222   1100      1


Q ss_pred             cCCccEEEEccccC-C------CCCCCChhHHHHHHhhhhHHH
Q psy4246         200 FRSLNILVLNAGVF-G------LGFSHTEDGFETTFQVNHLAH  235 (328)
Q Consensus       200 ~g~id~lvnnAg~~-~------~~~~~~~~~~~~~~~vN~~g~  235 (328)
                      .+.+|+||||+|+. .      ++.+.+.+.|..++++|+.+.
T Consensus       422 ~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~  464 (523)
T 2o7s_A          422 PEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPR  464 (523)
T ss_dssp             -CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSS
T ss_pred             ccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCc
Confidence            14589999999973 2      234456677888999999865

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.65  E-value=2.6e-08  Score=90.98  Aligned_cols=80  Identities=19%  Similarity=0.244  Sum_probs=61.2

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|+++|||||+||||.++++.+...|++|++++++.++++.+ +++     +..   ..+|.++.+++.+.+.++..  
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~-----g~~---~~~d~~~~~~~~~~~~~~~~--  212 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI-----GFD---AAFNYKTVNSLEEALKKASP--  212 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCS---EEEETTSCSCHHHHHHHHCT--
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc-----CCc---EEEecCCHHHHHHHHHHHhC--
Confidence            3689999999999999999999999999999999988776554 333     222   23577774455555554432  


Q ss_pred             CCccEEEEccc
Q psy4246         201 RSLNILVLNAG  211 (328)
Q Consensus       201 g~id~lvnnAg  211 (328)
                      +++|++|+|+|
T Consensus       213 ~~~d~vi~~~g  223 (333)
T 1v3u_A          213 DGYDCYFDNVG  223 (333)
T ss_dssp             TCEEEEEESSC
T ss_pred             CCCeEEEECCC
Confidence            58999999999

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.64  E-value=4.2e-08  Score=82.63  Aligned_cols=79  Identities=10%  Similarity=0.099  Sum_probs=57.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|++++||||+||||.++++.+...|++|++++++.++.+.+.    +.  +..   ..+|.++.+.++.+.+...  .+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~----~~--g~~---~~~d~~~~~~~~~~~~~~~--~~  106 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RL--GVE---YVGDSRSVDFADEILELTD--GY  106 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TT--CCS---EEEETTCSTHHHHHHHHTT--TC
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----Hc--CCC---EEeeCCcHHHHHHHHHHhC--CC
Confidence            6899999999999999999999999999999999877654331    11  322   2247776654444433221  13


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ++|++|+|+|
T Consensus       107 ~~D~vi~~~g  116 (198)
T 1pqw_A          107 GVDVVLNSLA  116 (198)
T ss_dssp             CEEEEEECCC
T ss_pred             CCeEEEECCc
Confidence            6999999997

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.64  E-value=7.6e-09  Score=92.69  Aligned_cols=81  Identities=20%  Similarity=0.299  Sum_probs=61.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++++|+++|||++ |+|+++|+.|++.| +|++++|+.++++++.+++..... ... .+.+|+++.          .+
T Consensus       124 ~~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~-~~~-~~~~d~~~~----------~~  189 (287)
T 1nvt_A          124 GRVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLN-KKF-GEEVKFSGL----------DV  189 (287)
T ss_dssp             CCCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHT-CCH-HHHEEEECT----------TC
T ss_pred             CCcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcc-ccc-ceeEEEeeH----------HH
Confidence            46899999999997 99999999999999 999999999888777766643210 000 123455442          34


Q ss_pred             hcCCccEEEEccccC
Q psy4246         199 KFRSLNILVLNAGVF  213 (328)
Q Consensus       199 ~~g~id~lvnnAg~~  213 (328)
                      .++++|+||||+|..
T Consensus       190 ~~~~~DilVn~ag~~  204 (287)
T 1nvt_A          190 DLDGVDIIINATPIG  204 (287)
T ss_dssp             CCTTCCEEEECSCTT
T ss_pred             hhCCCCEEEECCCCC
Confidence            567899999999974

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=98.63  E-value=4e-08  Score=87.35  Aligned_cols=70  Identities=14%  Similarity=0.079  Sum_probs=58.5

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      +++||||| |.||.+++++|+++|++|++++|+........    .    ..+.++.+|++|.+            +.++
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~~------------~~~~   64 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR----A----SGAEPLLWPGEEPS------------LDGV   64 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH----H----TTEEEEESSSSCCC------------CTTC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh----h----CCCeEEEecccccc------------cCCC
Confidence            67999998 99999999999999999999999987654432    1    35888999999833            4689


Q ss_pred             cEEEEccccCC
Q psy4246         204 NILVLNAGVFG  214 (328)
Q Consensus       204 d~lvnnAg~~~  214 (328)
                      |+|||+||...
T Consensus        65 d~vi~~a~~~~   75 (286)
T 3ius_A           65 THLLISTAPDS   75 (286)
T ss_dssp             CEEEECCCCBT
T ss_pred             CEEEECCCccc
Confidence            99999999753

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.61  E-value=6.1e-08  Score=92.20  Aligned_cols=79  Identities=14%  Similarity=0.199  Sum_probs=61.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |++|+++|+| +||||+++++.|++.|++|++++|+.++++++..    ..  ..+..+.+|++|.+++.++++      
T Consensus         1 M~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~----~~--~~~~~~~~Dv~d~~~l~~~l~------   67 (450)
T 1ff9_A            1 MATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA----GV--QHSTPISLDVNDDAALDAEVA------   67 (450)
T ss_dssp             -CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTT----TC--TTEEEEECCTTCHHHHHHHHT------
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHH----hc--CCceEEEeecCCHHHHHHHHc------
Confidence            3578899998 7999999999999999999999999776544322    21  136778999999888776653      


Q ss_pred             CCccEEEEccccC
Q psy4246         201 RSLNILVLNAGVF  213 (328)
Q Consensus       201 g~id~lvnnAg~~  213 (328)
                       ++|+||||++..
T Consensus        68 -~~DvVIn~a~~~   79 (450)
T 1ff9_A           68 -KHDLVISLIPYT   79 (450)
T ss_dssp             -TSSEEEECCC--
T ss_pred             -CCcEEEECCccc
Confidence             699999999863

>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.2e-08  Score=69.76  Aligned_cols=51  Identities=22%  Similarity=0.248  Sum_probs=43.0

Q ss_pred             cccceecCCCcEEEEeCcCCccccCCCCCCccccc--cCCCCCCCeeeeeCCC
Q psy4246          20 GWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKV--SGDLPLGWEKSVSEDG   70 (328)
Q Consensus        20 ~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~~--~~~lp~gw~~~~~~~g   70 (328)
                      .|.+..+.+||+||+|..||.|+|+.|.+.+...+  +.....+|++..++.|
T Consensus        21 ~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~~e~dr~l~~~P~k~~~~~~~   73 (73)
T 2dk7_A           21 PWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPHKKSGPSSG   73 (73)
T ss_dssp             SCEEEEESSSCEEEEETTTTEECSSCCTTTTTCSHHHHHHHSCTTTSSSCSCC
T ss_pred             CcEEEECCCCCEEEecCcccceeccCChHhcCHHHHHHHHhcCCccccCCCCC
Confidence            59999999999999999999999999999987743  4455778888777654

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}

Probab=98.49  E-value=9.4e-08  Score=62.50  Aligned_cols=35  Identities=26%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             CCCCCCCeeeeeC-CCcEEEEeccCcccccCCCccc
Q psy4246          56 GDLPLGWEKSVSE-DGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        56 ~~lp~gw~~~~~~-~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      ..||.||++..+. .|+.||+|+.|+.++|+.|...
T Consensus         6 ~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~   41 (54)
T 2jv4_A            6 TGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT   41 (54)
T ss_dssp             CCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred             CCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence            3599999999876 8999999999999999999753

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.48  E-value=4.3e-07  Score=81.26  Aligned_cols=92  Identities=16%  Similarity=0.096  Sum_probs=68.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +||||||+|-||.+++++|.++|++|+++.|++..              ..   +..|     .   +   ..+....+|
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~--------------~~---~~~~-----~---~---~~~~l~~~d   53 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP--------------GR---ITWD-----E---L---AASGLPSCD   53 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT--------------TE---EEHH-----H---H---HHHCCCSCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc--------------Ce---eecc-----h---h---hHhhccCCC
Confidence            48999999999999999999999999999997532              11   1111     1   1   122346899


Q ss_pred             EEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         205 ILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       205 ~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      ++||.||..  .+....+.......+++|+.++-.+.+++..
T Consensus        54 ~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~   95 (298)
T 4b4o_A           54 AAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITK   95 (298)
T ss_dssp             EEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            999999853  3344567777788899999998888776643

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.46  E-value=8.6e-07  Score=80.05  Aligned_cols=84  Identities=19%  Similarity=0.277  Sum_probs=64.8

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC---hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRS---LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFA  193 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  193 (328)
                      +.+++||++||+|+ ||+|++++..|++.|+ +|++++|+   .++++++.+++.... +..+.  .+++.+.+++.+.+
T Consensus       149 ~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~-~~~~~--~~~~~~~~~l~~~l  224 (315)
T 3tnl_A          149 GHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT-DCKAQ--LFDIEDHEQLRKEI  224 (315)
T ss_dssp             TCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEE--EEETTCHHHHHHHH
T ss_pred             CCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc-CCceE--EeccchHHHHHhhh
Confidence            56789999999998 7999999999999998 89999999   888888888876653 23333  34555655544433


Q ss_pred             HHHHHhcCCccEEEEcccc
Q psy4246         194 EEYQKKFRSLNILVLNAGV  212 (328)
Q Consensus       194 ~~~~~~~g~id~lvnnAg~  212 (328)
                      .       ..|+|||+..+
T Consensus       225 ~-------~aDiIINaTp~  236 (315)
T 3tnl_A          225 A-------ESVIFTNATGV  236 (315)
T ss_dssp             H-------TCSEEEECSST
T ss_pred             c-------CCCEEEECccC
Confidence            2       58999998765

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.45  E-value=4.1e-07  Score=86.72  Aligned_cols=81  Identities=16%  Similarity=0.193  Sum_probs=62.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..++++++++|+|+ ||+|+++++.|++. |++|++++|+.++++++...       ..+..+.+|++|.+++.++++  
T Consensus        18 ~~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-------~~~~~~~~D~~d~~~l~~~l~--   87 (467)
T 2axq_A           18 EGRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-------SGSKAISLDVTDDSALDKVLA--   87 (467)
T ss_dssp             -----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-------GTCEEEECCTTCHHHHHHHHH--
T ss_pred             ccCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-------cCCcEEEEecCCHHHHHHHHc--
Confidence            34678899999997 99999999999998 78999999998776654432       124567899999888776654  


Q ss_pred             HHhcCCccEEEEccccC
Q psy4246         197 QKKFRSLNILVLNAGVF  213 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~  213 (328)
                           ++|+|||+++..
T Consensus        88 -----~~DvVIn~tp~~   99 (467)
T 2axq_A           88 -----DNDVVISLIPYT   99 (467)
T ss_dssp             -----TSSEEEECSCGG
T ss_pred             -----CCCEEEECCchh
Confidence                 689999999863

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.44  E-value=1.7e-07  Score=83.13  Aligned_cols=78  Identities=12%  Similarity=0.186  Sum_probs=58.9

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +.++++|+++|+|+ ||+|+++++.|++.|++|++++|+.++++++.+++...  + .+.  .+|+   +++       .
T Consensus       114 ~~~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~--~-~~~--~~~~---~~~-------~  177 (271)
T 1nyt_A          114 SFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT--G-SIQ--ALSM---DEL-------E  177 (271)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG--S-SEE--ECCS---GGG-------T
T ss_pred             CcCcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc--C-Cee--EecH---HHh-------c
Confidence            34688999999998 79999999999999999999999998887776665332  1 221  2333   221       1


Q ss_pred             HhcCCccEEEEccccC
Q psy4246         198 KKFRSLNILVLNAGVF  213 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~  213 (328)
                      +  +++|+||||+|..
T Consensus       178 ~--~~~DivVn~t~~~  191 (271)
T 1nyt_A          178 G--HEFDLIINATSSG  191 (271)
T ss_dssp             T--CCCSEEEECCSCG
T ss_pred             c--CCCCEEEECCCCC
Confidence            1  6899999999974

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.43  E-value=3.8e-07  Score=83.71  Aligned_cols=80  Identities=13%  Similarity=0.074  Sum_probs=61.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+||||.++++.+...|++|++++++.++++.+ .++     +..   ..+|+++.+++.+.+.++...  
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~-~~~-----g~~---~~~d~~~~~~~~~~~~~~~~~--  237 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF-RSI-----GGE---VFIDFTKEKDIVGAVLKATDG--  237 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH-HHT-----TCC---EEEETTTCSCHHHHHHHHHTS--
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH-HHc-----CCc---eEEecCccHhHHHHHHHHhCC--
Confidence            689999999999999999999999999999999988776432 222     322   234777656666666655433  


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|+|+|.
T Consensus       238 ~~D~vi~~~g~  248 (347)
T 2hcy_A          238 GAHGVINVSVS  248 (347)
T ss_dssp             CEEEEEECSSC
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=98.42  E-value=1.1e-07  Score=67.05  Aligned_cols=34  Identities=29%  Similarity=0.692  Sum_probs=31.2

Q ss_pred             CCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          15 DELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        15 ~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      .++|.+|++..+.+|++||+|+.|++|+|++|++
T Consensus        42 ~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e   75 (75)
T 2jxw_A           42 TAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD   75 (75)
T ss_dssp             SSCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred             cCCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence            3578999999999999999999999999999963

>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1

Probab=98.42  E-value=1.3e-07  Score=52.41  Aligned_cols=27  Identities=30%  Similarity=0.609  Sum_probs=24.1

Q ss_pred             ccccceecCCCcEEEEeCcCCccccCCC
Q psy4246          19 PGWEERVTADGCVYYVNHATEGTQWTHP   46 (328)
Q Consensus        19 ~~w~~~~~~~g~~~~~~~~~~~t~w~~p   46 (328)
                      +||| .....|+.||+|+.|++|+|+.|
T Consensus         1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P   27 (27)
T 1e0n_A            1 PGWE-IIHENGRPLYYNAEQKTKLHYPP   27 (27)
T ss_dssp             CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred             CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence            4899 44589999999999999999987

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=98.41  E-value=3.6e-07  Score=83.26  Aligned_cols=106  Identities=14%  Similarity=0.019  Sum_probs=73.4

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCC-------eEEEeeCCh--hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGC-------RVILACRSL--DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      .+++||||+|.||.+++..|+.+|.       +|+++++..  +........+...  ...+  + .|+.+...+.+.+ 
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~--~~~~--~-~di~~~~~~~~a~-   78 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC--AFPL--L-AGLEATDDPKVAF-   78 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--TCTT--E-EEEEEESCHHHHT-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcc--cccc--c-CCeEeccChHHHh-
Confidence            3699999999999999999999996       799999864  2233323334321  1111  2 4666544444333 


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         195 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                            .+.|++||.||..... .   +.....+++|+.++..+++++..+
T Consensus        79 ------~~~D~Vih~Ag~~~~~-~---~~~~~~~~~Nv~~t~~l~~a~~~~  119 (327)
T 1y7t_A           79 ------KDADYALLVGAAPRKA-G---MERRDLLQVNGKIFTEQGRALAEV  119 (327)
T ss_dssp             ------TTCSEEEECCCCCCCT-T---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCCCEEEECCCcCCCC-C---CCHHHHHHHHHHHHHHHHHHHHhh
Confidence                  3689999999986422 1   234567999999999999998775

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=98.41  E-value=6.6e-08  Score=71.03  Aligned_cols=33  Identities=27%  Similarity=0.592  Sum_probs=30.8

Q ss_pred             CCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          17 LPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        17 lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      ||.+|++..+.+||+||+||.|++|+|++|+..
T Consensus        53 ~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~   85 (92)
T 2l5f_A           53 SKCPWKEYKSDSGKTYYYNSQTKESRWAKPKEL   85 (92)
T ss_dssp             HSCSEEEEECTTCCEEEEETTTTEEESCCCHHH
T ss_pred             cccceEEEECCCCCEEEEECCCCCeeccCchhH
Confidence            678999999999999999999999999999864

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.41  E-value=5.5e-07  Score=82.14  Aligned_cols=80  Identities=16%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++|||||+||||.++++.+...|++|++++++.++++.+. ++     +..   ..+|.++.+..+.+.+...  ..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~-----g~~---~~~d~~~~~~~~~i~~~~~--~~  213 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KL-----GCH---HTINYSTQDFAEVVREITG--GK  213 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH-----TCS---EEEETTTSCHHHHHHHHHT--TC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCC---EEEECCCHHHHHHHHHHhC--CC
Confidence            6899999999999999999999999999999999987765543 23     222   2346666554444433221  13


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|+|+|.
T Consensus       214 ~~d~vi~~~g~  224 (333)
T 1wly_A          214 GVDVVYDSIGK  224 (333)
T ss_dssp             CEEEEEECSCT
T ss_pred             CCeEEEECCcH
Confidence            69999999994

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.40  E-value=3e-07  Score=84.25  Aligned_cols=81  Identities=16%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|+++||+||+||||.++++.+...|++|++++++.++++.+.+++     +..   ..+|.++.+++.+.+.++..  
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~-----g~~---~~~d~~~~~~~~~~~~~~~~--  223 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF-----GFD---DAFNYKEESDLTAALKRCFP--  223 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS-----CCS---EEEETTSCSCSHHHHHHHCT--
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCc---eEEecCCHHHHHHHHHHHhC--
Confidence            36899999999999999999999999999999999987765443222     322   22466655444444544432  


Q ss_pred             CCccEEEEccc
Q psy4246         201 RSLNILVLNAG  211 (328)
Q Consensus       201 g~id~lvnnAg  211 (328)
                      +++|++|+|+|
T Consensus       224 ~~~d~vi~~~g  234 (345)
T 2j3h_A          224 NGIDIYFENVG  234 (345)
T ss_dssp             TCEEEEEESSC
T ss_pred             CCCcEEEECCC
Confidence            57999999998

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.38  E-value=3.7e-07  Score=83.04  Aligned_cols=79  Identities=18%  Similarity=0.215  Sum_probs=58.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++|||||+||||.++++.+...|++|++++++.++++.+. ++     +..   ..+|.++.+.++.+.+...  ..
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~-~~-----g~~---~~~~~~~~~~~~~~~~~~~--~~  208 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KA-----GAW---QVINYREEDLVERLKEITG--GK  208 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH-----TCS---EEEETTTSCHHHHHHHHTT--TC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc-----CCC---EEEECCCccHHHHHHHHhC--CC
Confidence            6899999999999999999999999999999999987765443 23     222   2246666554444433221  13


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ++|++|+|+|
T Consensus       209 ~~D~vi~~~g  218 (327)
T 1qor_A          209 KVRVVYDSVG  218 (327)
T ss_dssp             CEEEEEECSC
T ss_pred             CceEEEECCc
Confidence            6999999999

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.36  E-value=2.9e-07  Score=59.04  Aligned_cols=33  Identities=24%  Similarity=0.564  Sum_probs=30.5

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      ..||.||++..+..| .||+|+.++.+||+.|..
T Consensus        18 ~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~   50 (55)
T 2e45_A           18 SDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR   50 (55)
T ss_dssp             SCCCTTEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred             CCCCCCCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence            469999999999988 999999999999999953

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.35  E-value=6.4e-07  Score=82.47  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=58.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+||||.++++.+...|++|++++++.++++.+ .++     +..   ..+|.++.+.++.+.+...  .+
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~~~~~~~--~~  230 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKL-----GAA---AGFNYKKEDFSEATLKFTK--GA  230 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH-----TCS---EEEETTTSCHHHHHHHHTT--TS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCc---EEEecCChHHHHHHHHHhc--CC
Confidence            689999999999999999999999999999999998776654 333     222   2356666544443332211  13


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|+|+|.
T Consensus       231 ~~d~vi~~~G~  241 (354)
T 2j8z_A          231 GVNLILDCIGG  241 (354)
T ss_dssp             CEEEEEESSCG
T ss_pred             CceEEEECCCc
Confidence            69999999994

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.34  E-value=5.7e-07  Score=82.10  Aligned_cols=81  Identities=15%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|+++||+||+||||.++++.+...|++|++++++.++++.+.+++     +..   ..+|.++.+..+.+.+..   .
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~-----g~~---~~~~~~~~~~~~~~~~~~---~  216 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL-----GFD---GAIDYKNEDLAAGLKREC---P  216 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT-----CCS---EEEETTTSCHHHHHHHHC---T
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCC---EEEECCCHHHHHHHHHhc---C
Confidence            36899999999999999999999999999999999987766543333     322   224665544333333222   2


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++|+|+|.
T Consensus       217 ~~~d~vi~~~g~  228 (336)
T 4b7c_A          217 KGIDVFFDNVGG  228 (336)
T ss_dssp             TCEEEEEESSCH
T ss_pred             CCceEEEECCCc
Confidence            579999999984

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.33  E-value=5.3e-07  Score=71.27  Aligned_cols=78  Identities=17%  Similarity=0.175  Sum_probs=56.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +++++.++|+|+ |++|..+++.|.+.|++|++++++.+..+.+    ...    ....+.+|.++.+.++++      .
T Consensus         3 ~~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~----~~~----~~~~~~~d~~~~~~l~~~------~   67 (144)
T 2hmt_A            3 RIKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAY----ASY----ATHAVIANATEENELLSL------G   67 (144)
T ss_dssp             ---CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTT----TTT----CSEEEECCTTCHHHHHTT------T
T ss_pred             CCcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHh----CCEEEEeCCCCHHHHHhc------C
Confidence            356788999998 9999999999999999999999987654322    111    234577899886655432      2


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                      ..+.|++|++++.
T Consensus        68 ~~~~d~vi~~~~~   80 (144)
T 2hmt_A           68 IRNFEYVIVAIGA   80 (144)
T ss_dssp             GGGCSEEEECCCS
T ss_pred             CCCCCEEEECCCC
Confidence            3479999999874

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.32  E-value=4.6e-07  Score=83.47  Aligned_cols=79  Identities=19%  Similarity=0.275  Sum_probs=56.8

Q ss_pred             CC--ceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         122 SN--YNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       122 ~~--k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .|  +++|||||+||||.++++.+...|+ +|++++++.++++.+.+++     +..   ..+|.++.+..+. +.++..
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~-----g~~---~~~d~~~~~~~~~-~~~~~~  228 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL-----GFD---AAINYKKDNVAEQ-LRESCP  228 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS-----CCS---EEEETTTSCHHHH-HHHHCT
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-----CCc---eEEecCchHHHHH-HHHhcC
Confidence            57  9999999999999999999999999 9999999987665443322     322   2356666433333 222221


Q ss_pred             hcCCccEEEEccc
Q psy4246         199 KFRSLNILVLNAG  211 (328)
Q Consensus       199 ~~g~id~lvnnAg  211 (328)
                        +++|++|+|+|
T Consensus       229 --~~~d~vi~~~G  239 (357)
T 2zb4_A          229 --AGVDVYFDNVG  239 (357)
T ss_dssp             --TCEEEEEESCC
T ss_pred             --CCCCEEEECCC
Confidence              36999999999

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.27  E-value=2.2e-06  Score=67.85  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=58.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .++.++|+|+ |.+|.++++.|.++|++|++++++++..+.+..    .    .+.++.+|.++++.++++      ...
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~----~~~~~~gd~~~~~~l~~~------~~~   69 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E----GFDAVIADPTDESFYRSL------DLE   69 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEECCTTCHHHHHHS------CCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C----CCcEEECCCCCHHHHHhC------Ccc
Confidence            4578999998 679999999999999999999999877654432    2    256788999998876553      234


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      +.|++|.+.+
T Consensus        70 ~~d~vi~~~~   79 (141)
T 3llv_A           70 GVSAVLITGS   79 (141)
T ss_dssp             TCSEEEECCS
T ss_pred             cCCEEEEecC
Confidence            7899998776

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.27  E-value=1.1e-06  Score=80.80  Aligned_cols=80  Identities=13%  Similarity=0.187  Sum_probs=57.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+||||.++++.+...|++|+++++++++++.+ .++     +..   ..+|.++.+..+.+.+..  ..+
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~-----ga~---~~~d~~~~~~~~~~~~~~--~~~  238 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQN-----GAH---EVFNHREVNYIDKIKKYV--GEK  238 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCS---EEEETTSTTHHHHHHHHH--CTT
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-HHc-----CCC---EEEeCCCchHHHHHHHHc--CCC
Confidence            589999999999999999999999999999999998776532 222     222   234666654444333222  113


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|+|+|.
T Consensus       239 ~~D~vi~~~G~  249 (351)
T 1yb5_A          239 GIDIIIEMLAN  249 (351)
T ss_dssp             CEEEEEESCHH
T ss_pred             CcEEEEECCCh
Confidence            79999999983

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.25  E-value=2.2e-06  Score=79.42  Aligned_cols=78  Identities=12%  Similarity=0.087  Sum_probs=60.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+.+++++|+|+ |+||+++++.+...|++|++++|+.++++.+.+.+     +..   +.+|.++.+++.+++.     
T Consensus       163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~-----g~~---~~~~~~~~~~l~~~~~-----  228 (369)
T 2eez_A          163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF-----GGR---VITLTATEANIKKSVQ-----  228 (369)
T ss_dssp             BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----TTS---EEEEECCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc-----Cce---EEEecCCHHHHHHHHh-----
Confidence            478999999999 99999999999999999999999987765543322     223   4567777777666553     


Q ss_pred             cCCccEEEEccccC
Q psy4246         200 FRSLNILVLNAGVF  213 (328)
Q Consensus       200 ~g~id~lvnnAg~~  213 (328)
                        +.|+||+++|..
T Consensus       229 --~~DvVi~~~g~~  240 (369)
T 2eez_A          229 --HADLLIGAVLVP  240 (369)
T ss_dssp             --HCSEEEECCC--
T ss_pred             --CCCEEEECCCCC
Confidence              589999999974

>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.23  E-value=7.3e-07  Score=57.09  Aligned_cols=38  Identities=24%  Similarity=0.481  Sum_probs=32.6

Q ss_pred             ccccceecCCCcEEEEeCcCCccccCCCCCCccccccC
Q psy4246          19 PGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSG   56 (328)
Q Consensus        19 ~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~~~~~   56 (328)
                      ..|.+..+.+|+.||+|..|+.++|+.|.....+.++.
T Consensus         7 ~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~~~~~   44 (50)
T 2dk1_A            7 GRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKT   44 (50)
T ss_dssp             CCEEECCCSTTCCCEEESSSCCEESSCCTTCCCCCSTT
T ss_pred             CCeEEEECCCCCEEEEECCCCCEEeeCChhhhhhHHhc
Confidence            36999999999999999999999999998776655443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.22  E-value=3.1e-06  Score=75.34  Aligned_cols=82  Identities=15%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.+++....++.++.  ..+..+   +.+.+.  
T Consensus       122 ~~~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~--~~~~~~---l~~~l~--  193 (283)
T 3jyo_A          122 LPNAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVDARG---IEDVIA--  193 (283)
T ss_dssp             CTTCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEE--EECSTT---HHHHHH--
T ss_pred             CcCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEE--EcCHHH---HHHHHh--
Confidence            34789999999998 7999999999999998 79999999999988888887654333333  233322   333332  


Q ss_pred             HHhcCCccEEEEcccc
Q psy4246         197 QKKFRSLNILVLNAGV  212 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~  212 (328)
                           ..|+|||+...
T Consensus       194 -----~~DiVInaTp~  204 (283)
T 3jyo_A          194 -----AADGVVNATPM  204 (283)
T ss_dssp             -----HSSEEEECSST
T ss_pred             -----cCCEEEECCCC
Confidence                 47999998765

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=98.21  E-value=1.7e-06  Score=79.25  Aligned_cols=80  Identities=13%  Similarity=0.171  Sum_probs=57.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|+++|||||+||||..+++.+... |++|+++++++++++.+ +++     +...   .+|.++.+.++.+. ++... 
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~~~-~~~~~-  238 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRA-----GADY---VINASMQDPLAEIR-RITES-  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHH-----TCSE---EEETTTSCHHHHHH-HHTTT-
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh-----CCCE---EecCCCccHHHHHH-HHhcC-
Confidence            6899999999999999999999999 99999999998776544 333     2222   23555544333222 22111 


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++|+|+|.
T Consensus       239 ~~~d~vi~~~g~  250 (347)
T 1jvb_A          239 KGVDAVIDLNNS  250 (347)
T ss_dssp             SCEEEEEESCCC
T ss_pred             CCceEEEECCCC
Confidence            589999999984

>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}

Probab=98.15  E-value=5.7e-07  Score=58.26  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=30.6

Q ss_pred             CCCCCCeeeee-CCCcEEEEeccCcccccCCCccc
Q psy4246          57 DLPLGWEKSVS-EDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        57 ~lp~gw~~~~~-~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      .||.||++..+ +.|+.||+|+.|+.++|+.|+..
T Consensus        10 ~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~   44 (52)
T 2jx8_A           10 LVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG   44 (52)
T ss_dssp             HHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred             CCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence            48999999998 47999999999999999999754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.13  E-value=1.1e-05  Score=72.63  Aligned_cols=84  Identities=19%  Similarity=0.248  Sum_probs=62.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC---hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRS---LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFA  193 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  193 (328)
                      +.++++|+++|+|+ ||+|++++..|++.|+ +|++++|+   .++++++.+++.... +..+..  .++.+.+.+.+.+
T Consensus       143 ~~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~-~~~v~~--~~~~~l~~~~~~l  218 (312)
T 3t4e_A          143 GFDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT-DCVVTV--TDLADQHAFTEAL  218 (312)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS-SCEEEE--EETTCHHHHHHHH
T ss_pred             CCCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc-CcceEE--echHhhhhhHhhc
Confidence            45789999999998 8999999999999998 89999999   788888887776543 233333  3444433222222


Q ss_pred             HHHHHhcCCccEEEEcccc
Q psy4246         194 EEYQKKFRSLNILVLNAGV  212 (328)
Q Consensus       194 ~~~~~~~g~id~lvnnAg~  212 (328)
                      .       ..|+|||+...
T Consensus       219 ~-------~~DiIINaTp~  230 (312)
T 3t4e_A          219 A-------SADILTNGTKV  230 (312)
T ss_dssp             H-------HCSEEEECSST
T ss_pred             c-------CceEEEECCcC
Confidence            2       47999998765

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.13  E-value=5.7e-06  Score=76.01  Aligned_cols=79  Identities=15%  Similarity=0.203  Sum_probs=58.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+||||.++++.+...|++|++++++.++++.+. ++     +...   .+|.++.+..+.+.+ +.  .+
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~---~~~~~~~~~~~~~~~-~~--~~  234 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RL-----GAKR---GINYRSEDFAAVIKA-ET--GQ  234 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH-----TCSE---EEETTTSCHHHHHHH-HH--SS
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc-----CCCE---EEeCCchHHHHHHHH-Hh--CC
Confidence            6899999999999999999999999999999999988765443 33     3222   245555443333333 22  45


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|+|+|.
T Consensus       235 g~Dvvid~~g~  245 (353)
T 4dup_A          235 GVDIILDMIGA  245 (353)
T ss_dssp             CEEEEEESCCG
T ss_pred             CceEEEECCCH
Confidence            79999999994

>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1

Probab=98.10  E-value=2.8e-06  Score=51.85  Aligned_cols=33  Identities=27%  Similarity=0.537  Sum_probs=30.8

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR   88 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~   88 (328)
                      ..+|.+|.+..+++|+.||+|..|++++|+.|.
T Consensus         6 ~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~   38 (40)
T 2ysi_A            6 SGTEEIWVENKTPDGKVYYYNARTRESAWTKPD   38 (40)
T ss_dssp             CCCCCSEEEEECTTSCEEEEETTTCCEESSCCS
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEEeCCCC
Confidence            457899999999999999999999999999996

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.10  E-value=6.7e-07  Score=84.83  Aligned_cols=46  Identities=26%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAI  164 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~  164 (328)
                      +.+|.||+++|||++ |||+++|+.|+..|++|+++++++..+.++.
T Consensus       260 g~~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa  305 (488)
T 3ond_A          260 DVMIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQAT  305 (488)
T ss_dssp             CCCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCcccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            467999999999997 9999999999999999999999987655443

>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A

Probab=98.08  E-value=2.1e-06  Score=52.71  Aligned_cols=34  Identities=29%  Similarity=0.597  Sum_probs=27.5

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCc
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR   88 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~   88 (328)
                      .+.+|.+|.+..+++|+.||+|..|++++|+.|.
T Consensus         7 ~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~   40 (41)
T 1ywi_A            7 VGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD   40 (41)
T ss_dssp             -----CCEEEEEETTTEEEEEETTTTEEEESCC-
T ss_pred             CCCCCCCcEEEECCCCCEEEEECCCCCEEeCCCC
Confidence            4567999999999999999999999999999995

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=98.08  E-value=1.3e-06  Score=76.28  Aligned_cols=39  Identities=18%  Similarity=0.372  Sum_probs=35.4

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchhh
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAK   93 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~~   93 (328)
                      .++||.||++..+.+|++||+||.++.++|++|++....
T Consensus         9 ~~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~~~   47 (261)
T 1eg3_A            9 STSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELY   47 (261)
T ss_dssp             HTTCCTTEEEEECTTSCEEEEETTTTEEESSCHHHHHHH
T ss_pred             CCCCCCCcceeECCCCCeEeecCCcccccCCCCchhhhh
Confidence            368999999999999999999999999999999976543

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=98.07  E-value=7.3e-06  Score=77.75  Aligned_cols=86  Identities=14%  Similarity=0.147  Sum_probs=60.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEc--ccC---------CHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMEL--NLC---------RLKSV  189 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~--Dls---------~~~~v  189 (328)
                      -.|+++||+||+||||..+++.+...|++|++++++.++++.+ +++     +....+...  |+.         +.+++
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~-~~l-----Ga~~~i~~~~~~~~~~~~~~~~~~~~~~  292 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV-RAL-----GCDLVINRAELGITDDIADDPRRVVETG  292 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCCCEEEHHHHTCCTTGGGCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-Hhc-----CCCEEEecccccccccccccccccchhh
Confidence            3689999999999999999999999999999999988776544 222     332222211  221         12445


Q ss_pred             HHHHHHHHHhcC-CccEEEEcccc
Q psy4246         190 KKFAEEYQKKFR-SLNILVLNAGV  212 (328)
Q Consensus       190 ~~~~~~~~~~~g-~id~lvnnAg~  212 (328)
                      +.+.+.+.+..+ ++|++|+++|.
T Consensus       293 ~~~~~~v~~~~g~g~Dvvid~~G~  316 (447)
T 4a0s_A          293 RKLAKLVVEKAGREPDIVFEHTGR  316 (447)
T ss_dssp             HHHHHHHHHHHSSCCSEEEECSCH
T ss_pred             hHHHHHHHHHhCCCceEEEECCCc
Confidence            556666666544 69999999983

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=98.07  E-value=1.3e-05  Score=73.17  Aligned_cols=79  Identities=22%  Similarity=0.253  Sum_probs=56.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+||||..+++.+...|++|++++++.++++.+. ++     +...   .+|.++.+..+. +.++.. ..
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~-----ga~~---~~d~~~~~~~~~-~~~~~~-~~  234 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL-----GADE---TVNYTHPDWPKE-VRRLTG-GK  234 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH-----TCSE---EEETTSTTHHHH-HHHHTT-TT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc-----CCCE---EEcCCcccHHHH-HHHHhC-CC
Confidence            5899999999999999999999999999999999987765543 33     2222   246666432222 222211 13


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ++|++|+|+|
T Consensus       235 ~~d~vi~~~g  244 (343)
T 2eih_A          235 GADKVVDHTG  244 (343)
T ss_dssp             CEEEEEESSC
T ss_pred             CceEEEECCC
Confidence            7999999999

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.05  E-value=1.3e-05  Score=71.05  Aligned_cols=77  Identities=14%  Similarity=0.186  Sum_probs=58.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++...  + .+..  +|+   +++.       +
T Consensus       115 ~~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~--~-~~~~--~~~---~~~~-------~  178 (272)
T 1p77_A          115 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY--G-NIQA--VSM---DSIP-------L  178 (272)
T ss_dssp             CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG--S-CEEE--EEG---GGCC-------C
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc--C-CeEE--eeH---HHhc-------c
Confidence            4688999999998 79999999999999999999999998888877766432  1 2222  233   1110       1


Q ss_pred             hcCCccEEEEccccC
Q psy4246         199 KFRSLNILVLNAGVF  213 (328)
Q Consensus       199 ~~g~id~lvnnAg~~  213 (328)
                        +..|+|||+++..
T Consensus       179 --~~~DivIn~t~~~  191 (272)
T 1p77_A          179 --QTYDLVINATSAG  191 (272)
T ss_dssp             --SCCSEEEECCCC-
T ss_pred             --CCCCEEEECCCCC
Confidence              5799999999974

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=98.02  E-value=6.4e-06  Score=74.98  Aligned_cols=81  Identities=14%  Similarity=0.163  Sum_probs=56.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|+++||+||+||||.++++.+...|++|++++++.++++.+ .++     +...   .+|..+.+..+.+.+..  ..
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~-----ga~~---~~~~~~~~~~~~~~~~~--~~  215 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KEY-----GAEY---LINASKEDILRQVLKFT--NG  215 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCSE---EEETTTSCHHHHHHHHT--TT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc-----CCcE---EEeCCCchHHHHHHHHh--CC
Confidence            3689999999999999999999999999999999988776533 222     3222   23554433333322211  11


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      .++|++|+|+|.
T Consensus       216 ~g~D~vid~~g~  227 (334)
T 3qwb_A          216 KGVDASFDSVGK  227 (334)
T ss_dssp             SCEEEEEECCGG
T ss_pred             CCceEEEECCCh
Confidence            369999999994

>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A

Probab=98.00  E-value=6e-06  Score=49.48  Aligned_cols=33  Identities=27%  Similarity=0.493  Sum_probs=30.3

Q ss_pred             CCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          57 DLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        57 ~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      .+..+|.+..+++|+.||+|..|++++|+.|..
T Consensus         3 ~~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~   35 (37)
T 1e0l_A            3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQE   35 (37)
T ss_dssp             SSSCSCEEEECTTSCEEEEETTTTEEESSCCSS
T ss_pred             CCCCCeEEEECCCCCEEEEECCCCCEEecCCCc
Confidence            467899999999999999999999999999963

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.96  E-value=9.8e-06  Score=73.52  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=56.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+||||..+++.+...|++|+++++++++++.+. ++     +...   .+|.++.+..+.+.+..  ...
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~-----Ga~~---~~~~~~~~~~~~~~~~~--~~~  208 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-AL-----GAWE---TIDYSHEDVAKRVLELT--DGK  208 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH-----TCSE---EEETTTSCHHHHHHHHT--TTC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCCE---EEeCCCccHHHHHHHHh--CCC
Confidence            5899999999999999999999999999999999988766443 33     3222   23555544333332221  113


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|+|+|.
T Consensus       209 g~Dvvid~~g~  219 (325)
T 3jyn_A          209 KCPVVYDGVGQ  219 (325)
T ss_dssp             CEEEEEESSCG
T ss_pred             CceEEEECCCh
Confidence            69999999994

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=97.95  E-value=4.1e-06  Score=68.39  Aligned_cols=35  Identities=31%  Similarity=0.684  Sum_probs=29.1

Q ss_pred             CCCCCCCeeeee-CCCcEEEEeccCcccccCCCccc
Q psy4246          56 GDLPLGWEKSVS-EDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        56 ~~lp~gw~~~~~-~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      ..||.||+...+ ..|+.||+||.++.++|++|+..
T Consensus         8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~   43 (166)
T 3tc5_A            8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN   43 (166)
T ss_dssp             --CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred             CCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence            469999999999 68999999999999999999754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.92  E-value=1.1e-05  Score=73.69  Aligned_cols=81  Identities=14%  Similarity=0.121  Sum_probs=56.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|+++||+||++|||..+++.+...|++|++++++.++++.+. ++     +...   .+|..+.+..+.+.+..  ..
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~l-----ga~~---~~~~~~~~~~~~~~~~~--~~  211 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL-RL-----GAAY---VIDTSTAPLYETVMELT--NG  211 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HH-----TCSE---EEETTTSCHHHHHHHHT--TT
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hC-----CCcE---EEeCCcccHHHHHHHHh--CC
Confidence            36899999999999999999999899999999999888765443 33     3222   23555443333222211  11


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      .++|++|+|+|.
T Consensus       212 ~g~Dvvid~~g~  223 (340)
T 3gms_A          212 IGADAAIDSIGG  223 (340)
T ss_dssp             SCEEEEEESSCH
T ss_pred             CCCcEEEECCCC
Confidence            369999999984

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.91  E-value=3.8e-05  Score=73.00  Aligned_cols=85  Identities=20%  Similarity=0.221  Sum_probs=62.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEc--c--------cCCHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMEL--N--------LCRLKSVK  190 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~--D--------ls~~~~v~  190 (328)
                      -.|++|||+||+|+||...++.+...|++|++++++.++++.+ +++     |....+-..  |        .++.++++
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~-~~l-----Ga~~vi~~~~~d~~~~~~~~~~~~~~~~  300 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC-RAM-----GAEAIIDRNAEGYRFWKDENTQDPKEWK  300 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHH-----TCCEEEETTTTTCCSEEETTEECHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHH-Hhh-----CCcEEEecCcCcccccccccccchHHHH
Confidence            3689999999999999999999999999999999887776544 333     332221111  1        24556677


Q ss_pred             HHHHHHHHhcC--CccEEEEccc
Q psy4246         191 KFAEEYQKKFR--SLNILVLNAG  211 (328)
Q Consensus       191 ~~~~~~~~~~g--~id~lvnnAg  211 (328)
                      .+.+.+.+..+  ++|++|+++|
T Consensus       301 ~~~~~i~~~t~g~g~Dvvid~~G  323 (456)
T 3krt_A          301 RFGKRIRELTGGEDIDIVFEHPG  323 (456)
T ss_dssp             HHHHHHHHHHTSCCEEEEEECSC
T ss_pred             HHHHHHHHHhCCCCCcEEEEcCC
Confidence            77777776553  7999999998

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.89  E-value=5.7e-05  Score=60.50  Aligned_cols=78  Identities=13%  Similarity=0.091  Sum_probs=57.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..+.++|.|+ |.+|..+++.|.+.|++|++++++ .+..+.+....     ...+.++..|.++++.++++      ..
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a------~i   69 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKA------GI   69 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHH------TT
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHc------Ch
Confidence            4567888886 999999999999999999999997 44443333222     12467789999998865543      12


Q ss_pred             CCccEEEEccc
Q psy4246         201 RSLNILVLNAG  211 (328)
Q Consensus       201 g~id~lvnnAg  211 (328)
                      .+.|.+|.+.+
T Consensus        70 ~~ad~vi~~~~   80 (153)
T 1id1_A           70 DRCRAILALSD   80 (153)
T ss_dssp             TTCSEEEECSS
T ss_pred             hhCCEEEEecC
Confidence            46899988765

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.89  E-value=2.4e-05  Score=71.42  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=55.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|+++||+||+||||..+++.+...|++|++++++.++.+.+. ++     +... .+  |..  +++   .+.+.+..
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~-----ga~~-v~--~~~--~~~---~~~v~~~~  223 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK-SV-----GADI-VL--PLE--EGW---AKAVREAT  223 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HH-----TCSE-EE--ESS--TTH---HHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc-----CCcE-Ee--cCc--hhH---HHHHHHHh
Confidence            36899999999999999999999999999999999888765433 33     2222 22  333  222   23333333


Q ss_pred             C--CccEEEEcccc
Q psy4246         201 R--SLNILVLNAGV  212 (328)
Q Consensus       201 g--~id~lvnnAg~  212 (328)
                      +  ++|++|+|+|.
T Consensus       224 ~~~g~Dvvid~~g~  237 (342)
T 4eye_A          224 GGAGVDMVVDPIGG  237 (342)
T ss_dssp             TTSCEEEEEESCC-
T ss_pred             CCCCceEEEECCch
Confidence            2  69999999994

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=97.87  E-value=4.8e-06  Score=78.24  Aligned_cols=39  Identities=31%  Similarity=0.681  Sum_probs=35.4

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccchhh
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAK   93 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~~~   93 (328)
                      .++||.||++.++++|++||+||.++.++|+|||.....
T Consensus         6 ~~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~~~~   44 (429)
T 3olm_A            6 LGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSL   44 (429)
T ss_dssp             CCCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTSCCCC
T ss_pred             CCCCCCCceeEECCCCCeEEEeCCCcceeccCCCCCccc
Confidence            367999999999999999999999999999999986543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.87  E-value=1.7e-05  Score=71.14  Aligned_cols=78  Identities=19%  Similarity=0.205  Sum_probs=57.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.+++....  .       ++.+.++       +.
T Consensus       137 ~~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~--~-------~~~~~~~-------~~  199 (297)
T 2egg_A          137 ITLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERR--S-------AYFSLAE-------AE  199 (297)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSS--C-------CEECHHH-------HH
T ss_pred             CCCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhcc--C-------ceeeHHH-------HH
Confidence            4688999999998 7999999999999998 99999999888777665542110  0       1112222       22


Q ss_pred             HhcCCccEEEEccccC
Q psy4246         198 KKFRSLNILVLNAGVF  213 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~  213 (328)
                      +.....|+|||+.+..
T Consensus       200 ~~~~~aDivIn~t~~~  215 (297)
T 2egg_A          200 TRLAEYDIIINTTSVG  215 (297)
T ss_dssp             HTGGGCSEEEECSCTT
T ss_pred             hhhccCCEEEECCCCC
Confidence            3345799999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.85  E-value=3.8e-05  Score=66.99  Aligned_cols=83  Identities=14%  Similarity=0.198  Sum_probs=65.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++++|+|.|+ ||+|.++++.|+..|. +|.+++++.                   .+.+.+.+.+....|..++..+
T Consensus        28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            467889999997 7999999999999997 899999987                   6788888888877777788888


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ..++++ +.+.+++       ...|+||++..
T Consensus       107 ~~~~~~-~~~~~~~-------~~~DvVi~~~d  130 (249)
T 1jw9_B          107 NALLDD-AELAALI-------AEHDLVLDCTD  130 (249)
T ss_dssp             CSCCCH-HHHHHHH-------HTSSEEEECCS
T ss_pred             eccCCH-hHHHHHH-------hCCCEEEEeCC
Confidence            777763 3333333       36899998754

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.85  E-value=1.9e-05  Score=72.81  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=53.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh---hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL---DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++|+++||+|| ||||..+++.+...|++|++++++.   ++++. ..++     +..  .+  | .+ +-.+.+.+  .
T Consensus       179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~~~~-----ga~--~v--~-~~-~~~~~~~~--~  243 (366)
T 2cdc_A          179 LNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTV-IEET-----KTN--YY--N-SS-NGYDKLKD--S  243 (366)
T ss_dssp             STTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHH-HHHH-----TCE--EE--E-CT-TCSHHHHH--H
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHH-HHHh-----CCc--ee--c-hH-HHHHHHHH--h
Confidence            44999999999 9999999999999999999999987   66533 3333     322  22  5 44 22223222  1


Q ss_pred             HhcCCccEEEEcccc
Q psy4246         198 KKFRSLNILVLNAGV  212 (328)
Q Consensus       198 ~~~g~id~lvnnAg~  212 (328)
                       . +++|++|+++|.
T Consensus       244 -~-~~~d~vid~~g~  256 (366)
T 2cdc_A          244 -V-GKFDVIIDATGA  256 (366)
T ss_dssp             -H-CCEEEEEECCCC
T ss_pred             -C-CCCCEEEECCCC
Confidence             2 689999999995

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=97.82  E-value=5.3e-05  Score=69.30  Aligned_cols=79  Identities=15%  Similarity=0.021  Sum_probs=55.4

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      ++++||+||+||||..+++.+...|++|++++++.++++.+. ++     +...   .+|..+.+..+.+.+.. .. .+
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~-----Ga~~---~~~~~~~~~~~~v~~~~-~~-~g  233 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DI-----GAAH---VLNEKAPDFEATLREVM-KA-EQ  233 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HH-----TCSE---EEETTSTTHHHHHHHHH-HH-HC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCCE---EEECCcHHHHHHHHHHh-cC-CC
Confidence            489999999999999999999999999999999988765543 33     3222   23444433333332222 11 36


Q ss_pred             ccEEEEcccc
Q psy4246         203 LNILVLNAGV  212 (328)
Q Consensus       203 id~lvnnAg~  212 (328)
                      +|++|+++|.
T Consensus       234 ~D~vid~~g~  243 (349)
T 3pi7_A          234 PRIFLDAVTG  243 (349)
T ss_dssp             CCEEEESSCH
T ss_pred             CcEEEECCCC
Confidence            9999999984

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.82  E-value=5.1e-05  Score=69.92  Aligned_cols=78  Identities=10%  Similarity=0.059  Sum_probs=56.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+++++++|+|+ ||+|+++++.+...|++|++++|+.++++.+.+....     .+..   +..+.+.+.+.+      
T Consensus       164 ~l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~---~~~~~~~~~~~~------  228 (361)
T 1pjc_A          164 GVKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVEL---LYSNSAEIETAV------  228 (361)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEE---EECCHHHHHHHH------
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEe---eeCCHHHHHHHH------
Confidence            367899999999 9999999999999999999999998887765543321     2212   222333333322      


Q ss_pred             cCCccEEEEccccC
Q psy4246         200 FRSLNILVLNAGVF  213 (328)
Q Consensus       200 ~g~id~lvnnAg~~  213 (328)
                       ...|++||+++..
T Consensus       229 -~~~DvVI~~~~~~  241 (361)
T 1pjc_A          229 -AEADLLIGAVLVP  241 (361)
T ss_dssp             -HTCSEEEECCCCT
T ss_pred             -cCCCEEEECCCcC
Confidence             2689999999874

>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1

Probab=97.81  E-value=1.6e-05  Score=43.91  Aligned_cols=27  Identities=33%  Similarity=0.725  Sum_probs=24.9

Q ss_pred             CCCeeeeeCCCcEEEEeccCcccccCCC
Q psy4246          60 LGWEKSVSEDGKITFYNKDTHVKTYTDP   87 (328)
Q Consensus        60 ~gw~~~~~~~g~~yy~n~~~~~~~~~~P   87 (328)
                      .||+ ...+.|+.||+|..|+.++|+.|
T Consensus         1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P   27 (27)
T 1e0n_A            1 PGWE-IIHENGRPLYYNAEQKTKLHYPP   27 (27)
T ss_dssp             CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred             CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence            4899 88889999999999999999987

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.80  E-value=4.1e-05  Score=70.55  Aligned_cols=78  Identities=18%  Similarity=0.194  Sum_probs=54.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+||||..+++.+...|++|++++++.++++.+. ++     +... .  +|..+.+ +.+.+.+..  -+
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~-~~-----Ga~~-~--~~~~~~~-~~~~~~~~~--~~  230 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLK-SL-----GCDR-P--INYKTEP-VGTVLKQEY--PE  230 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HT-----TCSE-E--EETTTSC-HHHHHHHHC--TT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-Hc-----CCcE-E--EecCChh-HHHHHHHhc--CC
Confidence            6899999999999999999999999999999999977665432 22     3222 1  3444332 223333221  14


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ++|++|+|+|
T Consensus       231 g~D~vid~~g  240 (362)
T 2c0c_A          231 GVDVVYESVG  240 (362)
T ss_dssp             CEEEEEECSC
T ss_pred             CCCEEEECCC
Confidence            6999999998

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.80  E-value=8.6e-05  Score=65.89  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=58.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      +.++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.+++....   .+.....  .+   +.      
T Consensus       121 ~~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~~~--~~---l~------  185 (281)
T 3o8q_A          121 QVLLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQAF--EQ---LK------  185 (281)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEEEG--GG---CC------
T ss_pred             CCCccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEeeH--HH---hc------
Confidence            45789999999998 6999999999999996 99999999999888887775431   3333322  11   10      


Q ss_pred             HHhcCCccEEEEcccc
Q psy4246         197 QKKFRSLNILVLNAGV  212 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~  212 (328)
                          ...|+|||+...
T Consensus       186 ----~~aDiIInaTp~  197 (281)
T 3o8q_A          186 ----QSYDVIINSTSA  197 (281)
T ss_dssp             ----SCEEEEEECSCC
T ss_pred             ----CCCCEEEEcCcC
Confidence                368999998765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.79  E-value=8.9e-05  Score=66.02  Aligned_cols=91  Identities=14%  Similarity=0.265  Sum_probs=72.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh------------------hHHHHHHHHHHhhCCCCeEEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL------------------DKANDAISKILTEKPSAQCIAME  180 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~  180 (328)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                  .+.+.+.+.+...+|..++..+.
T Consensus        33 kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~  111 (292)
T 3h8v_A           33 KIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHN  111 (292)
T ss_dssp             GGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEec
Confidence            467889999988 8999999999999995 899998765                  56777888888888888999999


Q ss_pred             cccCCHHHHHHHHHHHHHh----cCCccEEEEccc
Q psy4246         181 LNLCRLKSVKKFAEEYQKK----FRSLNILVLNAG  211 (328)
Q Consensus       181 ~Dls~~~~v~~~~~~~~~~----~g~id~lvnnAg  211 (328)
                      .++++.+.+..+++.+...    ....|+||.+..
T Consensus       112 ~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D  146 (292)
T 3h8v_A          112 YNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD  146 (292)
T ss_dssp             CCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred             ccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence            9998877777776554321    136899986543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.78  E-value=9.3e-05  Score=57.77  Aligned_cols=74  Identities=18%  Similarity=0.332  Sum_probs=54.7

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      +.++|+|+ |.+|..+++.|.+.|++|++++++.+..+....    ..   .+..+..|.++.+.+.+.      ...+.
T Consensus         5 m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----~~---~~~~~~~d~~~~~~l~~~------~~~~~   70 (140)
T 1lss_A            5 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA----EI---DALVINGDCTKIKTLEDA------GIEDA   70 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HC---SSEEEESCTTSHHHHHHT------TTTTC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----hc---CcEEEEcCCCCHHHHHHc------CcccC
Confidence            46888887 999999999999999999999998776544332    11   244677888887654321      13478


Q ss_pred             cEEEEccc
Q psy4246         204 NILVLNAG  211 (328)
Q Consensus       204 d~lvnnAg  211 (328)
                      |++|.+.+
T Consensus        71 d~vi~~~~   78 (140)
T 1lss_A           71 DMYIAVTG   78 (140)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEeeC
Confidence            99999865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.76  E-value=6.8e-05  Score=68.34  Aligned_cols=77  Identities=18%  Similarity=0.170  Sum_probs=55.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+|| ||||..+++.+...|++|++++++.++++.+. ++     +..   ..+|.++.+ +.+.+.++.   +
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~---~~~d~~~~~-~~~~~~~~~---~  229 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-EL-----GAD---LVVNPLKED-AAKFMKEKV---G  229 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HT-----TCS---EEECTTTSC-HHHHHHHHH---S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HC-----CCC---EEecCCCcc-HHHHHHHHh---C
Confidence            6889999999 88999999999999999999999987765432 22     322   124666543 222232222   6


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|+++|.
T Consensus       230 ~~d~vid~~g~  240 (339)
T 1rjw_A          230 GVHAAVVTAVS  240 (339)
T ss_dssp             SEEEEEESSCC
T ss_pred             CCCEEEECCCC
Confidence            89999999984

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.76  E-value=5.6e-05  Score=66.77  Aligned_cols=76  Identities=18%  Similarity=0.210  Sum_probs=57.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      +.++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.+++..    ..+..+  ++.+   +.      
T Consensus       115 ~~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~----~~~~~~--~~~~---l~------  178 (272)
T 3pwz_A          115 GEPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH----SRLRIS--RYEA---LE------  178 (272)
T ss_dssp             CCCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC----TTEEEE--CSGG---GT------
T ss_pred             CCCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc----CCeeEe--eHHH---hc------
Confidence            34689999999998 6999999999999996 999999999988888777632    123333  2222   11      


Q ss_pred             HHhcCCccEEEEcccc
Q psy4246         197 QKKFRSLNILVLNAGV  212 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~  212 (328)
                       .  ...|+|||+...
T Consensus       179 -~--~~~DivInaTp~  191 (272)
T 3pwz_A          179 -G--QSFDIVVNATSA  191 (272)
T ss_dssp             -T--CCCSEEEECSSG
T ss_pred             -c--cCCCEEEECCCC
Confidence             0  468999998754

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.71  E-value=0.00047  Score=62.47  Aligned_cols=105  Identities=16%  Similarity=0.141  Sum_probs=67.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+++||||+|.+|..++..|+.+|  .+|++++++.+  +....++.......++..    +++..++++.+       .
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~----~~~t~d~~~al-------~   75 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG----FLGQQQLEAAL-------T   75 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEE----EESHHHHHHHH-------T
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEE----EeCCCCHHHHc-------C
Confidence            469999999999999999999999  78999998765  223334433211112322    22233333332       4


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      ..|++|++||...... .+..   ..+.+|+.++..+++.+..+
T Consensus        76 gaDvVi~~ag~~~~~g-~~r~---dl~~~N~~~~~~i~~~i~~~  115 (326)
T 1smk_A           76 GMDLIIVPAGVPRKPG-MTRD---DLFKINAGIVKTLCEGIAKC  115 (326)
T ss_dssp             TCSEEEECCCCCCCSS-CCCS---HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCcCCCCC-CCHH---HHHHHHHHHHHHHHHHHHhh
Confidence            7899999999753221 2222   34778888888887777554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.69  E-value=6.3e-05  Score=69.69  Aligned_cols=78  Identities=14%  Similarity=0.157  Sum_probs=58.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+.|++++|+|+ |+||..+++.+...|++|++++++.++++.+.+.+     +..+   .++.++..++.+++.     
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~-----g~~~---~~~~~~~~~l~~~l~-----  230 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF-----CGRI---HTRYSSAYELEGAVK-----  230 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----TTSS---EEEECCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc-----CCee---EeccCCHHHHHHHHc-----
Confidence            578999999998 99999999999999999999999988765543322     2222   233444555444432     


Q ss_pred             cCCccEEEEccccC
Q psy4246         200 FRSLNILVLNAGVF  213 (328)
Q Consensus       200 ~g~id~lvnnAg~~  213 (328)
                        ..|+||++++..
T Consensus       231 --~aDvVi~~~~~p  242 (377)
T 2vhw_A          231 --RADLVIGAVLVP  242 (377)
T ss_dssp             --HCSEEEECCCCT
T ss_pred             --CCCEEEECCCcC
Confidence              589999999864

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.69  E-value=0.0001  Score=67.37  Aligned_cols=78  Identities=14%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+|+||..+++.+...|++|++++++.++++.+. ++     +...   .+|..+  ++.+.+.++  ..+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~---vi~~~~--~~~~~~~~~--~~~  216 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK-KM-----GADI---VLNHKE--SLLNQFKTQ--GIE  216 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHH-HH-----TCSE---EECTTS--CHHHHHHHH--TCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc-----CCcE---EEECCc--cHHHHHHHh--CCC
Confidence            6899999999999999999999999999999999887765443 33     3221   123332  222223332  234


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      .+|++|+++|.
T Consensus       217 g~Dvv~d~~g~  227 (346)
T 3fbg_A          217 LVDYVFCTFNT  227 (346)
T ss_dssp             CEEEEEESSCH
T ss_pred             CccEEEECCCc
Confidence            79999999984

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.68  E-value=0.00017  Score=65.55  Aligned_cols=107  Identities=10%  Similarity=0.011  Sum_probs=72.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCC-------eEEEeeCC----hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGC-------RVILACRS----LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKK  191 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga-------~Vi~~~r~----~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  191 (328)
                      ..+++||||+|.||..++..|+..|.       .|++++++    .++++....++....  ..+.   .|+....+..+
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~--~~~~---~~i~~~~~~~~   79 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA--FPLL---AGMTAHADPMT   79 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT--CTTE---EEEEEESSHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc--cccc---CcEEEecCcHH
Confidence            34799999999999999999999885       79999998    555555555555421  0111   24433233333


Q ss_pred             HHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         192 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       192 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      .       +...|++|+.||..... ..+.   ...+..|+.....+++.+..+
T Consensus        80 a-------l~~aD~Vi~~ag~~~~~-g~~r---~dl~~~N~~i~~~i~~~i~~~  122 (329)
T 1b8p_A           80 A-------FKDADVALLVGARPRGP-GMER---KDLLEANAQIFTVQGKAIDAV  122 (329)
T ss_dssp             H-------TTTCSEEEECCCCCCCT-TCCH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-------hCCCCEEEEeCCCCCCC-CCCH---HHHHHHHHHHHHHHHHHHHHh
Confidence            2       34689999999985322 2222   346788999888888888665

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.65  E-value=5.7e-05  Score=67.64  Aligned_cols=73  Identities=15%  Similarity=0.195  Sum_probs=53.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC-HHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR-LKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~~~  200 (328)
                      .|+++||+||+||||..+++.+...|++|+++++++++++.+. ++     +...   .+|..+ .+    +.+.+    
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~-----ga~~---~~~~~~~~~----~~~~~----  187 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-AL-----GAEE---AATYAEVPE----RAKAW----  187 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HT-----TCSE---EEEGGGHHH----HHHHT----
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc-----CCCE---EEECCcchh----HHHHh----
Confidence            6899999999999999999999999999999999887765432 22     3221   235444 22    22222    


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++|+ +|.
T Consensus       188 ~~~d~vid-~g~  198 (302)
T 1iz0_A          188 GGLDLVLE-VRG  198 (302)
T ss_dssp             TSEEEEEE-CSC
T ss_pred             cCceEEEE-CCH
Confidence            57999999 884

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.60  E-value=0.00014  Score=67.10  Aligned_cols=70  Identities=10%  Similarity=0.142  Sum_probs=56.1

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .|+|.|| |++|+.+|+.|++ .++|.+++++.+.++.+.         ..+..+.+|++|.+++.++++       +.|
T Consensus        18 kilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~---------~~~~~~~~d~~d~~~l~~~~~-------~~D   79 (365)
T 3abi_A           18 KVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK---------EFATPLKVDASNFDKLVEVMK-------EFE   79 (365)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT---------TTSEEEECCTTCHHHHHHHHT-------TCS
T ss_pred             EEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh---------ccCCcEEEecCCHHHHHHHHh-------CCC
Confidence            5888898 9999999999875 479999999987765432         234568899999998877765       579


Q ss_pred             EEEEcccc
Q psy4246         205 ILVLNAGV  212 (328)
Q Consensus       205 ~lvnnAg~  212 (328)
                      +|||+++.
T Consensus        80 vVi~~~p~   87 (365)
T 3abi_A           80 LVIGALPG   87 (365)
T ss_dssp             EEEECCCG
T ss_pred             EEEEecCC
Confidence            99999974

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.58  E-value=9.5e-05  Score=66.30  Aligned_cols=94  Identities=17%  Similarity=0.215  Sum_probs=62.2

Q ss_pred             CCCCce-EEEcCCCC-----------------C-ccHHHHHHHHHCCCeEEEeeCChhH--------HHHHHHHHHhh-C
Q psy4246         120 DLSNYN-AIVTGANT-----------------G-IGFETARSLALHGCRVILACRSLDK--------ANDAISKILTE-K  171 (328)
Q Consensus       120 ~l~~k~-~lITGas~-----------------G-IG~a~a~~la~~Ga~Vi~~~r~~~~--------~~~~~~~l~~~-~  171 (328)
                      ++.||. ||||+|..                 | .|.++|+.++++||.|+++.+...-        .....+.+... .
T Consensus        33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~  112 (313)
T 1p9o_A           33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGP  112 (313)
T ss_dssp             HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC
T ss_pred             hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCcchhccCccchhhhhccccc
Confidence            468888 99998876                 6 9999999999999999999875321        00001100000 0


Q ss_pred             CCCeEEEEEcccCCHHHHHHHHHHH------------------------------HHhcCCccEEEEccccC
Q psy4246         172 PSAQCIAMELNLCRLKSVKKFAEEY------------------------------QKKFRSLNILVLNAGVF  213 (328)
Q Consensus       172 ~~~~~~~~~~Dls~~~~v~~~~~~~------------------------------~~~~g~id~lvnnAg~~  213 (328)
                      ....+..+.+|+...+++.+.+.+.                              .+.++..|++|.+|++.
T Consensus       113 ~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVs  184 (313)
T 1p9o_A          113 ALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVS  184 (313)
T ss_dssp             -CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCC
T ss_pred             cccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchh
Confidence            0123445677777777666666543                              24467899999999985

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.56  E-value=4.3e-05  Score=61.42  Aligned_cols=81  Identities=9%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |..++.++.++|.|+ |.+|..+++.|.+.|++|++++++.+..+.+    ...   ..+..+..|.++.+.+.++    
T Consensus        13 ~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~----~~~---~g~~~~~~d~~~~~~l~~~----   80 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRL----NSE---FSGFTVVGDAAEFETLKEC----   80 (155)
T ss_dssp             ----CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGS----CTT---CCSEEEESCTTSHHHHHTT----
T ss_pred             hhcccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHH----Hhc---CCCcEEEecCCCHHHHHHc----
Confidence            344567888999996 9999999999999999999999998765432    101   1234567888876543321    


Q ss_pred             HHhcCCccEEEEccc
Q psy4246         197 QKKFRSLNILVLNAG  211 (328)
Q Consensus       197 ~~~~g~id~lvnnAg  211 (328)
                        ...+.|++|.+.+
T Consensus        81 --~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           81 --GMEKADMVFAFTN   93 (155)
T ss_dssp             --TGGGCSEEEECSS
T ss_pred             --CcccCCEEEEEeC
Confidence              1236899998876

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.54  E-value=0.00015  Score=66.20  Aligned_cols=76  Identities=13%  Similarity=0.235  Sum_probs=52.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+|+||..+++.+...|++|+++ ++.++++.+ .++     +...    +| .+.+ +.+.+.+... ..
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~-~~l-----Ga~~----i~-~~~~-~~~~~~~~~~-~~  215 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV-RDL-----GATP----ID-ASRE-PEDYAAEHTA-GQ  215 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH-HHH-----TSEE----EE-TTSC-HHHHHHHHHT-TS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH-HHc-----CCCE----ec-cCCC-HHHHHHHHhc-CC
Confidence            68999999999999999999999999999999 776665433 333     3332    34 3322 2233332221 23


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ++|++|+++|
T Consensus       216 g~D~vid~~g  225 (343)
T 3gaz_A          216 GFDLVYDTLG  225 (343)
T ss_dssp             CEEEEEESSC
T ss_pred             CceEEEECCC
Confidence            6999999998

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.53  E-value=0.00011  Score=67.77  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=55.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+|+ ||||..+++.+...|++|++++++.++.+.+.+++     +...   .+|..+.+.++       +..+
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l-----Ga~~---v~~~~~~~~~~-------~~~~  250 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF-----GADS---FLVSRDQEQMQ-------AAAG  250 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS-----CCSE---EEETTCHHHHH-------HTTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----CCce---EEeccCHHHHH-------HhhC
Confidence            7899999996 99999999999999999999999988765543232     3221   23555543332       2235


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|+++|.
T Consensus       251 ~~D~vid~~g~  261 (366)
T 1yqd_A          251 TLDGIIDTVSA  261 (366)
T ss_dssp             CEEEEEECCSS
T ss_pred             CCCEEEECCCc
Confidence            79999999985

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.47  E-value=0.00016  Score=66.73  Aligned_cols=77  Identities=16%  Similarity=0.271  Sum_probs=52.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|+++||+||+||||..+++.+...|++|+++++ .++.+.+ +++     +...   .+|..+.+..    +++.+ .
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~~-~~l-----Ga~~---v~~~~~~~~~----~~~~~-~  246 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASELV-RKL-----GADD---VIDYKSGSVE----EQLKS-L  246 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHHH-HHT-----TCSE---EEETTSSCHH----HHHHT-S
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHHH-HHc-----CCCE---EEECCchHHH----HHHhh-c
Confidence            36899999999999999999988899999998884 4554332 332     3222   2344443322    22322 3


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++|+++|.
T Consensus       247 ~g~D~vid~~g~  258 (375)
T 2vn8_A          247 KPFDFILDNVGG  258 (375)
T ss_dssp             CCBSEEEESSCT
T ss_pred             CCCCEEEECCCC
Confidence            679999999985

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.47  E-value=0.00034  Score=60.97  Aligned_cols=83  Identities=19%  Similarity=0.259  Sum_probs=62.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|++.                   .+.+.+.+.+...+|..++..+
T Consensus        25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            467889999998 7899999999999997 788876542                   5677777888887777788887


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ..+++. +.+.++++       ..|+||++..
T Consensus       104 ~~~~~~-~~~~~~~~-------~~DvVi~~~d  127 (251)
T 1zud_1          104 QQRLTG-EALKDAVA-------RADVVLDCTD  127 (251)
T ss_dssp             CSCCCH-HHHHHHHH-------HCSEEEECCS
T ss_pred             eccCCH-HHHHHHHh-------cCCEEEECCC
Confidence            777653 33444433       4799987643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.43  E-value=8.5e-05  Score=58.86  Aligned_cols=71  Identities=11%  Similarity=0.184  Sum_probs=52.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +++++|.|+ |++|..+++.|...|++|++++|+.++.+++.+++     +..+  .  +..+   +.+++.       .
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~-----~~~~--~--~~~~---~~~~~~-------~   80 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY-----EYEY--V--LIND---IDSLIK-------N   80 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH-----TCEE--E--ECSC---HHHHHH-------T
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh-----CCce--E--eecC---HHHHhc-------C
Confidence            889999997 99999999999999999999999998877766554     2221  1  2222   233332       5


Q ss_pred             ccEEEEccccC
Q psy4246         203 LNILVLNAGVF  213 (328)
Q Consensus       203 id~lvnnAg~~  213 (328)
                      .|++|++.+..
T Consensus        81 ~Divi~at~~~   91 (144)
T 3oj0_A           81 NDVIITATSSK   91 (144)
T ss_dssp             CSEEEECSCCS
T ss_pred             CCEEEEeCCCC
Confidence            89999998864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.43  E-value=0.00041  Score=54.62  Aligned_cols=76  Identities=14%  Similarity=0.153  Sum_probs=56.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++++ .++|.|+ |.+|..+++.|.+.|++|++++++++..+.+.    ..    .+.++..|.++++.++++      .
T Consensus         5 ~~~~-~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~----~~----g~~~i~gd~~~~~~l~~a------~   68 (140)
T 3fwz_A            5 DICN-HALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELR----ER----GVRAVLGNAANEEIMQLA------H   68 (140)
T ss_dssp             CCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH----HT----TCEEEESCTTSHHHHHHT------T
T ss_pred             cCCC-CEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH----Hc----CCCEEECCCCCHHHHHhc------C
Confidence            3444 4667786 78999999999999999999999988765543    21    345688999998765543      1


Q ss_pred             cCCccEEEEccc
Q psy4246         200 FRSLNILVLNAG  211 (328)
Q Consensus       200 ~g~id~lvnnAg  211 (328)
                      ..+.|++|.+.+
T Consensus        69 i~~ad~vi~~~~   80 (140)
T 3fwz_A           69 LECAKWLILTIP   80 (140)
T ss_dssp             GGGCSEEEECCS
T ss_pred             cccCCEEEEECC
Confidence            236788887665

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.40  E-value=0.00015  Score=59.71  Aligned_cols=78  Identities=10%  Similarity=0.054  Sum_probs=56.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++.++.++|.|+ |.+|..+++.|.+. |++|++++++++..+.+.    ..  +  +..+.+|.++.+.+.++     .
T Consensus        36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~----~~--g--~~~~~gd~~~~~~l~~~-----~  101 (183)
T 3c85_A           36 NPGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHR----SE--G--RNVISGDATDPDFWERI-----L  101 (183)
T ss_dssp             CCTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH----HT--T--CCEEECCTTCHHHHHTB-----C
T ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH----HC--C--CCEEEcCCCCHHHHHhc-----c
Confidence            356667888885 99999999999999 999999999987765432    22  2  34567898887654322     0


Q ss_pred             hcCCccEEEEccc
Q psy4246         199 KFRSLNILVLNAG  211 (328)
Q Consensus       199 ~~g~id~lvnnAg  211 (328)
                      ...+.|++|.+.+
T Consensus       102 ~~~~ad~vi~~~~  114 (183)
T 3c85_A          102 DTGHVKLVLLAMP  114 (183)
T ss_dssp             SCCCCCEEEECCS
T ss_pred             CCCCCCEEEEeCC
Confidence            1346899998765

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=97.40  E-value=0.00012  Score=60.34  Aligned_cols=34  Identities=32%  Similarity=0.783  Sum_probs=30.9

Q ss_pred             CCCCccccceec-CCCcEEEEeCcCCccccCCCCC
Q psy4246          15 DELPPGWEERVT-ADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        15 ~~lp~~w~~~~~-~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      ..||+|||.++. +.|+.||+|..|+.++|..|..
T Consensus         6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~   40 (177)
T 1yw5_A            6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG   40 (177)
T ss_dssp             CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred             CCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence            459999999997 7899999999999999999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.31  E-value=0.00065  Score=61.59  Aligned_cols=63  Identities=19%  Similarity=0.276  Sum_probs=51.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|++.                   .+.+.+.+.+...+|..++..+
T Consensus        31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~  109 (340)
T 3rui_A           31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  109 (340)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence            367889999998 8999999999999996 788887643                   4677778888888888888887


Q ss_pred             Eccc
Q psy4246         180 ELNL  183 (328)
Q Consensus       180 ~~Dl  183 (328)
                      ..++
T Consensus       110 ~~~i  113 (340)
T 3rui_A          110 KLSI  113 (340)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            7665

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.26  E-value=0.0007  Score=63.21  Aligned_cols=74  Identities=20%  Similarity=0.334  Sum_probs=54.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++.|++++|.|+ |+||..+++.|...|+ +|++++|+.+++++...++     +..  .  .+.   +++.+++     
T Consensus       164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~-----g~~--~--~~~---~~l~~~l-----  225 (404)
T 1gpj_A          164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-----GGE--A--VRF---DELVDHL-----  225 (404)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-----TCE--E--CCG---GGHHHHH-----
T ss_pred             cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-----CCc--e--ecH---HhHHHHh-----
Confidence            578999999998 9999999999999998 8999999988776655554     222  1  222   2233322     


Q ss_pred             hcCCccEEEEccccC
Q psy4246         199 KFRSLNILVLNAGVF  213 (328)
Q Consensus       199 ~~g~id~lvnnAg~~  213 (328)
                        ...|++|++.|..
T Consensus       226 --~~aDvVi~at~~~  238 (404)
T 1gpj_A          226 --ARSDVVVSATAAP  238 (404)
T ss_dssp             --HTCSEEEECCSSS
T ss_pred             --cCCCEEEEccCCC
Confidence              2689999988754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.26  E-value=0.00039  Score=63.42  Aligned_cols=77  Identities=21%  Similarity=0.223  Sum_probs=54.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|+++||+|+ |+||..+++.+...|+ +|+++++++++++.+ .++     +...   .+|..+.+ +   .+.+.+..
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~-~~~-----Ga~~---~~~~~~~~-~---~~~v~~~~  232 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELA-KKV-----GADY---VINPFEED-V---VKEVMDIT  232 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH-HHH-----TCSE---EECTTTSC-H---HHHHHHHT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-----CCCE---EECCCCcC-H---HHHHHHHc
Confidence            8899999999 9999999999989999 999999997766543 233     2221   23554432 2   22333322


Q ss_pred             --CCccEEEEcccc
Q psy4246         201 --RSLNILVLNAGV  212 (328)
Q Consensus       201 --g~id~lvnnAg~  212 (328)
                        .++|++|+++|.
T Consensus       233 ~g~g~D~vid~~g~  246 (348)
T 2d8a_A          233 DGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTSCEEEEEECSCC
T ss_pred             CCCCCCEEEECCCC
Confidence              269999999984

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.25  E-value=0.00056  Score=62.82  Aligned_cols=78  Identities=18%  Similarity=0.158  Sum_probs=53.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+| +|+||..+++.+...|++|++++++.++++.+ +++     +....   +| .+.+.+.+.+.++.. ..
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~l-----Ga~~v---i~-~~~~~~~~~v~~~~~-g~  256 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRA-FAL-----GADHG---IN-RLEEDWVERVYALTG-DR  256 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH-----TCSEE---EE-TTTSCHHHHHHHHHT-TC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHH-HHc-----CCCEE---Ec-CCcccHHHHHHHHhC-CC
Confidence            689999999 79999999999889999999999998776553 333     33221   24 332333333333221 12


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ++|++|+++|
T Consensus       257 g~D~vid~~g  266 (363)
T 3uog_A          257 GADHILEIAG  266 (363)
T ss_dssp             CEEEEEEETT
T ss_pred             CceEEEECCC
Confidence            6999999998

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.24  E-value=0.0012  Score=60.52  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCe-EEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCR-VILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|+++||+|+ |++|...++.+...|++ |+++++++++++.+. ++     ...+..+..|-.+.+++.   +++.+..
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-----~~~~~~~~~~~~~~~~~~---~~v~~~t  248 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-----CPEVVTHKVERLSAEESA---KKIVESF  248 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-----CTTCEEEECCSCCHHHHH---HHHHHHT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-----chhcccccccccchHHHH---HHHHHHh
Confidence            5889999998 99999999888889997 999999987765433 33     223444555544444443   3344333


Q ss_pred             --CCccEEEEcccc
Q psy4246         201 --RSLNILVLNAGV  212 (328)
Q Consensus       201 --g~id~lvnnAg~  212 (328)
                        .++|++|.++|.
T Consensus       249 ~g~g~Dvvid~~g~  262 (363)
T 3m6i_A          249 GGIEPAVALECTGV  262 (363)
T ss_dssp             SSCCCSEEEECSCC
T ss_pred             CCCCCCEEEECCCC
Confidence              369999999984

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.23  E-value=0.0021  Score=57.82  Aligned_cols=107  Identities=14%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC--eEEEeeC--ChhHHHHHHHHHHhh--CCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC--RVILACR--SLDKANDAISKILTE--KPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r--~~~~~~~~~~~l~~~--~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++||||+|.+|..++..|+..|.  .++++++  +.++++.....+...  ..+..+.+...|  |  ++.       +
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~--d--~l~-------~   70 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES--D--ENL-------R   70 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE--T--TCG-------G
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC--c--chH-------H
Confidence            589999999999999999999884  5888998  665454433333321  111122222111  0  111       1


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      .+...|++|+.||+.... ..+.   ...+.+|+.++..+++.+..+-
T Consensus        71 al~gaD~Vi~~Ag~~~~~-g~~r---~dl~~~N~~i~~~i~~~i~~~~  114 (313)
T 1hye_A           71 IIDESDVVIITSGVPRKE-GMSR---MDLAKTNAKIVGKYAKKIAEIC  114 (313)
T ss_dssp             GGTTCSEEEECCSCCCCT-TCCH---HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhCCCCEEEECCCCCCCC-CCcH---HHHHHHHHHHHHHHHHHHHHhC
Confidence            234799999999985322 1222   3458899999999888887654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.23  E-value=0.00025  Score=64.18  Aligned_cols=77  Identities=18%  Similarity=0.133  Sum_probs=50.3

Q ss_pred             Cc-eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         123 NY-NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       123 ~k-~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      |+ ++||+||+||||..+++.+...|++|+++++++++++.+ +++     +....   +|..+.+  .+.+.++  ..+
T Consensus       149 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~-~~l-----Ga~~~---i~~~~~~--~~~~~~~--~~~  215 (328)
T 1xa0_A          149 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL-RVL-----GAKEV---LAREDVM--AERIRPL--DKQ  215 (328)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH-HHT-----TCSEE---EECC-----------C--CSC
T ss_pred             CCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHc-----CCcEE---EecCCcH--HHHHHHh--cCC
Confidence            44 799999999999999999889999999999987776544 222     32221   3444332  1222222  124


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|+++|.
T Consensus       216 ~~d~vid~~g~  226 (328)
T 1xa0_A          216 RWAAAVDPVGG  226 (328)
T ss_dssp             CEEEEEECSTT
T ss_pred             cccEEEECCcH
Confidence            79999999984

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=97.22  E-value=0.00079  Score=61.75  Aligned_cols=86  Identities=12%  Similarity=0.076  Sum_probs=51.5

Q ss_pred             CC-ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH--HHHHHHHHHHHH
Q psy4246         122 SN-YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL--KSVKKFAEEYQK  198 (328)
Q Consensus       122 ~~-k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~--~~v~~~~~~~~~  198 (328)
                      .| +++||+||+|++|...++.+...|++|++++++.++..+..+.+++.  |.... +  |..+.  +++.+.+.++..
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~l--Ga~~v-i--~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL--GATQV-I--TEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH--TCSEE-E--EHHHHHCGGGHHHHHHHHH
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhc--CCeEE-E--ecCccchHHHHHHHHHHhh
Confidence            57 89999999999999998888788999999887665422222222222  32221 2  22210  122222222210


Q ss_pred             -hcCCccEEEEcccc
Q psy4246         199 -KFRSLNILVLNAGV  212 (328)
Q Consensus       199 -~~g~id~lvnnAg~  212 (328)
                       ..+++|++|.++|.
T Consensus       241 ~~~~g~Dvvid~~G~  255 (364)
T 1gu7_A          241 QSGGEAKLALNCVGG  255 (364)
T ss_dssp             HHTCCEEEEEESSCH
T ss_pred             ccCCCceEEEECCCc
Confidence             12479999999983

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.21  E-value=0.00094  Score=56.61  Aligned_cols=73  Identities=11%  Similarity=0.192  Sum_probs=55.9

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .++|.|+ |.+|..+|+.|.++|++|++++++++..+.+....       .+.++..|.++.+.++++      ...+.|
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a------~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDA------EVSKND   67 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHH------TCCTTC
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhc------CcccCC
Confidence            4889997 88999999999999999999999988766543221       345788999988766543      124678


Q ss_pred             EEEEccc
Q psy4246         205 ILVLNAG  211 (328)
Q Consensus       205 ~lvnnAg  211 (328)
                      ++|.+.+
T Consensus        68 ~vi~~~~   74 (218)
T 3l4b_C           68 VVVILTP   74 (218)
T ss_dssp             EEEECCS
T ss_pred             EEEEecC
Confidence            8887766

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.19  E-value=0.00086  Score=60.91  Aligned_cols=78  Identities=18%  Similarity=0.158  Sum_probs=54.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|+++||+|+ |+||...++.+...|++|+++++++++++.+ +++     +...   .+|..+.+..+.    +.+..
T Consensus       165 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~l-----Ga~~---~i~~~~~~~~~~----~~~~~  230 (340)
T 3s2e_A          165 RPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLA-RRL-----GAEV---AVNARDTDPAAW----LQKEI  230 (340)
T ss_dssp             CTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHT-----TCSE---EEETTTSCHHHH----HHHHH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHc-----CCCE---EEeCCCcCHHHH----HHHhC
Confidence            36889999997 8999999998888999999999998776543 222     3222   234444333333    22234


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++|.++|.
T Consensus       231 g~~d~vid~~g~  242 (340)
T 3s2e_A          231 GGAHGVLVTAVS  242 (340)
T ss_dssp             SSEEEEEESSCC
T ss_pred             CCCCEEEEeCCC
Confidence            689999999873

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.18  E-value=0.0025  Score=57.10  Aligned_cols=103  Identities=14%  Similarity=0.105  Sum_probs=67.0

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC--eEEEeeC--ChhHHHHHHHHHHhhCC-CCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC--RVILACR--SLDKANDAISKILTEKP-SAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r--~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +++||||+|.+|.+++..|+..|.  +++++++  +.++++....++..... ...+.+.. +  +.+           .
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~~-----------a   67 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GYE-----------D   67 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CGG-----------G
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CHH-----------H
Confidence            589999999999999999999885  6888998  76655544444433210 12222222 2  211           1


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      +...|++|+.||+.... ..+.   ...+..|+.++..+++.+..+
T Consensus        68 ~~~aDvVi~~ag~~~~~-g~~r---~dl~~~N~~i~~~i~~~i~~~  109 (303)
T 1o6z_A           68 TAGSDVVVITAGIPRQP-GQTR---IDLAGDNAPIMEDIQSSLDEH  109 (303)
T ss_dssp             GTTCSEEEECCCCCCCT-TCCH---HHHHHHHHHHHHHHHHHHHTT
T ss_pred             hCCCCEEEEcCCCCCCC-CCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence            34799999999975322 1232   345788888888877776543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.18  E-value=0.00024  Score=62.83  Aligned_cols=44  Identities=18%  Similarity=0.195  Sum_probs=38.7

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKAND  162 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~  162 (328)
                      +.++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.++
T Consensus       112 ~~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          112 YEGIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             STTGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            34688999999998 7999999999999998 89999999876544

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.12  E-value=0.00079  Score=59.18  Aligned_cols=43  Identities=26%  Similarity=0.216  Sum_probs=39.2

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKI  167 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l  167 (328)
                      +|.++|.|+ ||.|++++..|++.|++|.+++|+.++++++. ++
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~  160 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL  160 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC
Confidence            899999997 89999999999999999999999999887776 54

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.11  E-value=0.00044  Score=62.97  Aligned_cols=77  Identities=16%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|+++||+|| ||+|..+++.+...|+ +|++++++.++++.+. ++ .    .    ..+|..+. ++.+.+.++.  .
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~l-a----~----~v~~~~~~-~~~~~~~~~~--~  229 (343)
T 2dq4_A          164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR-PY-A----D----RLVNPLEE-DLLEVVRRVT--G  229 (343)
T ss_dssp             TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT-TT-C----S----EEECTTTS-CHHHHHHHHH--S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-H----H----hccCcCcc-CHHHHHHHhc--C
Confidence            8899999999 9999999998888999 9999999877654321 11 1    1    12455443 2333333332  3


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++|+++|.
T Consensus       230 ~g~D~vid~~g~  241 (343)
T 2dq4_A          230 SGVEVLLEFSGN  241 (343)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999984

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=97.11  E-value=0.0012  Score=64.10  Aligned_cols=63  Identities=19%  Similarity=0.276  Sum_probs=52.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .++++.|+|.|+ ||+|.++|+.|+..|. ++.++|.+.                   .+.+.+.+.+.+.+|..++..+
T Consensus       323 kL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~  401 (615)
T 4gsl_A          323 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  401 (615)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEe
Confidence            367889999998 7999999999999996 788888753                   4677788888888888888888


Q ss_pred             Eccc
Q psy4246         180 ELNL  183 (328)
Q Consensus       180 ~~Dl  183 (328)
                      ..++
T Consensus       402 ~~~I  405 (615)
T 4gsl_A          402 KLSI  405 (615)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            7665

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.08  E-value=0.00091  Score=61.63  Aligned_cols=79  Identities=15%  Similarity=0.148  Sum_probs=54.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC-HHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR-LKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~~  199 (328)
                      .|+++||+|+ |+||..+++.+...|+ +|+++++++++++.+. ++     +...   .+|.++ .+++.+.+.++.. 
T Consensus       192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l-----Ga~~---vi~~~~~~~~~~~~~~~~~~-  260 (374)
T 1cdo_A          192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF-----GATD---FVNPNDHSEPISQVLSKMTN-  260 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT-----TCCE---EECGGGCSSCHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hh-----CCce---EEeccccchhHHHHHHHHhC-
Confidence            5889999996 8999999998888999 7999999888765432 22     3221   235443 1234444443332 


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                       +++|++|+++|.
T Consensus       261 -~g~D~vid~~g~  272 (374)
T 1cdo_A          261 -GGVDFSLECVGN  272 (374)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCCEEEECCCC
Confidence             479999999985

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.07  E-value=0.0026  Score=57.99  Aligned_cols=81  Identities=19%  Similarity=0.133  Sum_probs=53.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC-HHHHHHHHHHHHH-h
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR-LKSVKKFAEEYQK-K  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~-~  199 (328)
                      .|+++||+|+ |+||..+++.+...|++|+++++++++++.+. ++     +... .  +|.++ .+..+++.+.... .
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~-~--~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NC-----GADV-T--LVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT-----TCSE-E--EECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-Hh-----CCCE-E--EcCcccccHHHHHHHHhcccc
Confidence            6889999997 89999999988889999999999887765432 22     3331 2  34443 2222332222110 0


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                      -+++|++|+++|.
T Consensus       238 g~g~D~vid~~g~  250 (352)
T 1e3j_A          238 GDLPNVTIDCSGN  250 (352)
T ss_dssp             SSCCSEEEECSCC
T ss_pred             CCCCCEEEECCCC
Confidence            2469999999984

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=97.03  E-value=0.001  Score=60.97  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=53.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      -.|+++||+|| |++|...++.+... |++|+++++++++++.+. ++     |...   .+|..+.  +.+.+.++.  
T Consensus       185 ~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~---vi~~~~~--~~~~v~~~~--  250 (359)
T 1h2b_A          185 YPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RL-----GADH---VVDARRD--PVKQVMELT--  250 (359)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HT-----TCSE---EEETTSC--HHHHHHHHT--
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-Hh-----CCCE---EEeccch--HHHHHHHHh--
Confidence            36899999999 89999999888888 999999999887765432 32     3222   2354443  333333321  


Q ss_pred             cC-CccEEEEcccc
Q psy4246         200 FR-SLNILVLNAGV  212 (328)
Q Consensus       200 ~g-~id~lvnnAg~  212 (328)
                      .+ ++|++|.++|.
T Consensus       251 ~g~g~Dvvid~~G~  264 (359)
T 1h2b_A          251 RGRGVNVAMDFVGS  264 (359)
T ss_dssp             TTCCEEEEEESSCC
T ss_pred             CCCCCcEEEECCCC
Confidence            13 69999999984

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.01  E-value=0.0011  Score=61.01  Aligned_cols=74  Identities=16%  Similarity=0.166  Sum_probs=53.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.++||+|+ |+||..+++.+...|++|+++++++++++.+. ++     +...   .+|..+.+.++    ++.   +
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~l-----Ga~~---vi~~~~~~~~~----~~~---~  256 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-AL-----GADE---VVNSRNADEMA----AHL---K  256 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HH-----TCSE---EEETTCHHHHH----TTT---T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCcE---EeccccHHHHH----Hhh---c
Confidence            5889999998 88999999888889999999999888766543 33     3221   23555543322    221   5


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|+++|.
T Consensus       257 g~Dvvid~~g~  267 (369)
T 1uuf_A          257 SFDFILNTVAA  267 (369)
T ss_dssp             CEEEEEECCSS
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.01  E-value=0.00054  Score=62.86  Aligned_cols=74  Identities=22%  Similarity=0.263  Sum_probs=52.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-HHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-KSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~~~~~~~~~  200 (328)
                      .|+++||+|+ |+||..+++.+...|++|+++++++++++.+. ++     +... +  +|..+. +.    .+.+.   
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~-v--~~~~~~~~~----~~~~~---  241 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KM-----GADH-Y--IATLEEGDW----GEKYF---  241 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HH-----TCSE-E--EEGGGTSCH----HHHSC---
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-Hc-----CCCE-E--EcCcCchHH----HHHhh---
Confidence            5899999999 99999999888889999999999887765443 33     3222 1  344332 21    22222   


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++|.++|.
T Consensus       242 ~~~D~vid~~g~  253 (360)
T 1piw_A          242 DTFDLIVVCASS  253 (360)
T ss_dssp             SCEEEEEECCSC
T ss_pred             cCCCEEEECCCC
Confidence            589999999986

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=97.01  E-value=0.0015  Score=60.16  Aligned_cols=78  Identities=17%  Similarity=0.092  Sum_probs=52.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh-
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK-  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~-  199 (328)
                      -.|+++||+||+|++|...++.+...|++|+++. +.++++ .++++     |...   .+|..+.+-    .+.+.+. 
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~-~~~~l-----Ga~~---vi~~~~~~~----~~~v~~~t  228 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFD-LAKSR-----GAEE---VFDYRAPNL----AQTIRTYT  228 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHH-HHHHT-----TCSE---EEETTSTTH----HHHHHHHT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHH-HHHHc-----CCcE---EEECCCchH----HHHHHHHc
Confidence            4689999999999999999999989999998886 555544 23332     3221   234444332    2233332 


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                      .+++|++|.++|.
T Consensus       229 ~g~~d~v~d~~g~  241 (371)
T 3gqv_A          229 KNNLRYALDCITN  241 (371)
T ss_dssp             TTCCCEEEESSCS
T ss_pred             cCCccEEEECCCc
Confidence            2469999999985

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.99  E-value=0.0034  Score=57.32  Aligned_cols=78  Identities=19%  Similarity=0.278  Sum_probs=52.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC--CHHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLC--RLKSVKKFAEEYQK  198 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls--~~~~v~~~~~~~~~  198 (328)
                      .|+++||+|+ |+||...++.+...|+ +|+++++++++++.+ +++     +.. .+  +|..  +.++.   .+++.+
T Consensus       171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~-~v--i~~~~~~~~~~---~~~i~~  237 (356)
T 1pl8_A          171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEI-----GAD-LV--LQISKESPQEI---ARKVEG  237 (356)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT-----TCS-EE--EECSSCCHHHH---HHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-----CCC-EE--EcCcccccchH---HHHHHH
Confidence            6889999996 8999999988888999 899999988765443 222     332 12  2433  22222   223322


Q ss_pred             hc-CCccEEEEcccc
Q psy4246         199 KF-RSLNILVLNAGV  212 (328)
Q Consensus       199 ~~-g~id~lvnnAg~  212 (328)
                      .. +++|++|+++|.
T Consensus       238 ~~~~g~D~vid~~g~  252 (356)
T 1pl8_A          238 QLGCKPEVTIECTGA  252 (356)
T ss_dssp             HHTSCCSEEEECSCC
T ss_pred             HhCCCCCEEEECCCC
Confidence            22 579999999984

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.99  E-value=0.0011  Score=61.15  Aligned_cols=79  Identities=19%  Similarity=0.198  Sum_probs=54.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC-HHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR-LKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~~  199 (328)
                      .|+++||+|+ |+||..+++.+...|+ +|+++++++++++.+ +++     +...   .+|..+ .+++.+.+.++.. 
T Consensus       191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~l-----Ga~~---vi~~~~~~~~~~~~~~~~~~-  259 (374)
T 2jhf_A          191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEV-----GATE---CVNPQDYKKPIQEVLTEMSN-  259 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT-----TCSE---EECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh-----CCce---EecccccchhHHHHHHHHhC-
Confidence            6889999995 8999999998888999 799999988876543 222     3221   234443 1223333333322 


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                       +++|++|+++|.
T Consensus       260 -~g~D~vid~~g~  271 (374)
T 2jhf_A          260 -GGVDFSFEVIGR  271 (374)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCcEEEECCCC
Confidence             479999999985

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.94  E-value=0.0013  Score=60.62  Aligned_cols=79  Identities=19%  Similarity=0.172  Sum_probs=53.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC-HHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR-LKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~~  199 (328)
                      .|+++||+|+ |+||..+++.+...|+ +|+++++++++++.+ +++     +...   .+|.++ .+++.+.+.++.. 
T Consensus       190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~-~~l-----Ga~~---vi~~~~~~~~~~~~v~~~~~-  258 (373)
T 2fzw_A          190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARA-KEF-----GATE---CINPQDFSKPIQEVLIEMTD-  258 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHH-----TCSE---EECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc-----CCce---EeccccccccHHHHHHHHhC-
Confidence            5889999996 8999999988888899 799999988876544 333     3221   234443 1233333333322 


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                       +++|++|+++|.
T Consensus       259 -~g~D~vid~~g~  270 (373)
T 2fzw_A          259 -GGVDYSFECIGN  270 (373)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCCEEEECCCc
Confidence             479999999985

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.94  E-value=0.001  Score=61.08  Aligned_cols=77  Identities=10%  Similarity=0.159  Sum_probs=51.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHH-CCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh-
Q psy4246         122 SNYNAIVTGANTGIGFETARSLAL-HGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK-  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~-~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~-  199 (328)
                      .|+++||+||+|++|...++.+.. .|++|+++++++++++.+ .++     |....   +|..+  .+   .+.+.+. 
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~-~~l-----Gad~v---i~~~~--~~---~~~v~~~~  236 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWV-KSL-----GAHHV---IDHSK--PL---AAEVAALG  236 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH-HHT-----TCSEE---ECTTS--CH---HHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH-HHc-----CCCEE---EeCCC--CH---HHHHHHhc
Confidence            588999999999999988776655 589999999988776543 222     32221   24333  22   2333332 


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                      .+++|++|.++|.
T Consensus       237 ~~g~Dvvid~~g~  249 (363)
T 4dvj_A          237 LGAPAFVFSTTHT  249 (363)
T ss_dssp             SCCEEEEEECSCH
T ss_pred             CCCceEEEECCCc
Confidence            2479999999884

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.92  E-value=0.0011  Score=60.66  Aligned_cols=83  Identities=23%  Similarity=0.342  Sum_probs=65.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|+++.|+|.|+ ||+|.++++.|+..|. ++.++|++.                   .+.+.+.+.+...+|..++..+
T Consensus       115 ~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~  193 (353)
T 3h5n_A          115 KLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEI  193 (353)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEe
Confidence            467889999998 8999999999999996 788888752                   3566777888888888899999


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEccc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      ..++++...+.       + +.+.|+||.+..
T Consensus       194 ~~~i~~~~~~~-------~-~~~~DlVvd~~D  217 (353)
T 3h5n_A          194 ALNINDYTDLH-------K-VPEADIWVVSAD  217 (353)
T ss_dssp             ECCCCSGGGGG-------G-SCCCSEEEECCC
T ss_pred             ecccCchhhhh-------H-hccCCEEEEecC
Confidence            88888755322       2 457899988653

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.92  E-value=0.0032  Score=58.15  Aligned_cols=78  Identities=14%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC--CHHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC--RLKSVKKFAEEYQK  198 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls--~~~~v~~~~~~~~~  198 (328)
                      .|+++||+| +|++|..+++.+...| ++|+++++++++++.+. ++     +... ++  |..  +.+++   .+++.+
T Consensus       195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~l-----Ga~~-vi--~~~~~~~~~~---~~~v~~  261 (380)
T 1vj0_A          195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI-----GADL-TL--NRRETSVEER---RKAIMD  261 (380)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HT-----TCSE-EE--ETTTSCHHHH---HHHHHH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-Hc-----CCcE-EE--eccccCcchH---HHHHHH
Confidence            588999999 8999999999888899 59999999987765432 22     3221 22  332  13333   333333


Q ss_pred             hc-C-CccEEEEcccc
Q psy4246         199 KF-R-SLNILVLNAGV  212 (328)
Q Consensus       199 ~~-g-~id~lvnnAg~  212 (328)
                      .. + ++|++|+++|.
T Consensus       262 ~~~g~g~Dvvid~~g~  277 (380)
T 1vj0_A          262 ITHGRGADFILEATGD  277 (380)
T ss_dssp             HTTTSCEEEEEECSSC
T ss_pred             HhCCCCCcEEEECCCC
Confidence            33 2 69999999984

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.92  E-value=0.0016  Score=60.06  Aligned_cols=79  Identities=22%  Similarity=0.211  Sum_probs=53.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCH-HHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRL-KSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~~~~~~~~  199 (328)
                      .|+++||+|+ |+||..+++.+...|+ +|+++++++++++.+ +++     +...   .+|..+. +++.+.+.++.. 
T Consensus       195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~~---vi~~~~~~~~~~~~v~~~~~-  263 (376)
T 1e3i_A          195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KAL-----GATD---CLNPRELDKPVQDVITELTA-  263 (376)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT-----TCSE---EECGGGCSSCHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh-----CCcE---EEccccccchHHHHHHHHhC-
Confidence            5889999996 8999999988888999 799999988876543 232     3221   2344431 223333333322 


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                       +++|++|.++|.
T Consensus       264 -~g~Dvvid~~G~  275 (376)
T 1e3i_A          264 -GGVDYSLDCAGT  275 (376)
T ss_dssp             -SCBSEEEESSCC
T ss_pred             -CCccEEEECCCC
Confidence             479999999985

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.89  E-value=0.001  Score=61.35  Aligned_cols=77  Identities=21%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH--
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK--  198 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~--  198 (328)
                      .|+++||+|+ |++|...++.+...|+ +|+++++++++.+. ++++     |...   ..|.++.+.    .+.+.+  
T Consensus       182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~-a~~l-----Ga~~---vi~~~~~~~----~~~i~~~~  247 (370)
T 4ej6_A          182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRL-AEEV-----GATA---TVDPSAGDV----VEAIAGPV  247 (370)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHH-HHHH-----TCSE---EECTTSSCH----HHHHHSTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-HHHc-----CCCE---EECCCCcCH----HHHHHhhh
Confidence            5889999998 8999999988888999 88889888776543 3333     3221   235444332    223332  


Q ss_pred             --hcCCccEEEEcccc
Q psy4246         199 --KFRSLNILVLNAGV  212 (328)
Q Consensus       199 --~~g~id~lvnnAg~  212 (328)
                        ..+++|++|.++|.
T Consensus       248 ~~~~gg~Dvvid~~G~  263 (370)
T 4ej6_A          248 GLVPGGVDVVIECAGV  263 (370)
T ss_dssp             SSSTTCEEEEEECSCC
T ss_pred             hccCCCCCEEEECCCC
Confidence              12479999999884

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.89  E-value=0.00097  Score=60.06  Aligned_cols=75  Identities=11%  Similarity=0.104  Sum_probs=51.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -.|+++||+||+|+||...++.+...|++|++++++ ++. +..+++     +...   ..|..+.+.+.       +..
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~-~~~-~~~~~l-----Ga~~---~i~~~~~~~~~-------~~~  213 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-RNH-AFLKAL-----GAEQ---CINYHEEDFLL-------AIS  213 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH-HHH-HHHHHH-----TCSE---EEETTTSCHHH-------HCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc-chH-HHHHHc-----CCCE---EEeCCCcchhh-------hhc
Confidence            368999999999999999999999999999988754 332 333333     3322   23444433121       122


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      .++|++|.++|.
T Consensus       214 ~g~D~v~d~~g~  225 (321)
T 3tqh_A          214 TPVDAVIDLVGG  225 (321)
T ss_dssp             SCEEEEEESSCH
T ss_pred             cCCCEEEECCCc
Confidence            579999999984

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.89  E-value=0.00069  Score=62.09  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=52.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+|+ |+||...++.+...|++|++++++.++.+.+.+++     +...   ..|..+.+.++       +..+
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~l-----Ga~~---vi~~~~~~~~~-------~~~~  243 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDL-----GADD---YVIGSDQAKMS-------ELAD  243 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTS-----CCSC---EEETTCHHHHH-------HSTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHc-----CCce---eeccccHHHHH-------HhcC
Confidence            6899999995 99999999888888999999999887655433222     3221   12444433222       2235


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ++|++|.++|.
T Consensus       244 g~D~vid~~g~  254 (357)
T 2cf5_A          244 SLDYVIDTVPV  254 (357)
T ss_dssp             TEEEEEECCCS
T ss_pred             CCCEEEECCCC
Confidence            79999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	3e-24
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	4e-23
d1wmaa1	275	c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox	1e-22
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	7e-22
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	1e-21
d2ew8a1	247	c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas	2e-21
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	2e-21
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	2e-21
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	6e-21
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	6e-21
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	4e-20
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	4e-20
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	5e-20
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	7e-20
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	7e-20
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	5e-19
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	1e-18
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	1e-18
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	8e-08
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	1e-18
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	1e-18
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	2e-18
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	3e-18
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	7e-18
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	5e-07
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	7e-18
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	1e-17
d1zmta1	252	c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag	1e-17
d1ja9a_	259	c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc	2e-17
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	2e-17
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	2e-17
d1gz6a_	302	c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do	3e-17
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	3e-16
d1geea_	261	c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat	3e-16
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	4e-16
d1xu9a_	269	c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase	6e-16
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	6e-16
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	8e-08
d1oaaa_	259	c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus	1e-15
d1mxha_	266	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	1e-15
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	2e-15
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	3e-15
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	3e-15
d1gega_	255	c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl	8e-15
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	9e-15
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	3e-07
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	1e-14
d2rhca1	257	c.2.1.2 (A:5-261) beta-keto acyl carrier protein r	1e-14
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	2e-14
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	2e-14
d1x1ta1	260	c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge	3e-14
d1snya_	248	c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly	9e-14
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	7e-13
d2bd0a1	240	c.2.1.2 (A:2-241) Bacterial sepiapterin reductase	8e-13
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	1e-12
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	0.001
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	2e-12
d1uzma1	237	c.2.1.2 (A:9-245) beta-keto acyl carrier protein r	2e-12
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	2e-12
d1e7wa_	284	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	4e-12
d1fjha_	257	c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase	8e-12
d1ulua_	256	c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph	1e-11
d2o23a1	248	c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr	2e-11
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	2e-11
d1edoa_	244	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	4e-11
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	4e-11
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	6e-11
d1uaya_	241	c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena	3e-10
d1qsga_	258	c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli	6e-10
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	7e-10
d1d7oa_	297	c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B	5e-08
d2rm0w1	37	b.72.1.1 (W:1-37) Formin binding protein FBP28 dom	6e-08
d1jtva_	285	c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi	6e-08
d2h7ma1	268	c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri	7e-08
d1o6wa2	46	b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's	8e-08
d1o6wa2	46	b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's	0.004
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	4e-07
d2pd4a1	274	c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte	5e-07
d2fr1a1	259	c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI	9e-07
d1o6wa1	29	b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y	3e-05
d1uh5a_	329	c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite	3e-05
d1ywia1	28	b.72.1.1 (A:15-42) Huntingtin-interacting protein	3e-05
d1luaa1	191	c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter	7e-05
d2dk1a1	38	b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP	1e-04
d1eg3a3	38	b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens	4e-04
d2ho2a1	33	b.72.1.1 (A:253-285) Amyloid beta A4 precursor pro	0.002

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (242), Expect = 3e-24
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
             +  A+VTGA+ GIG   AR+L   G +V+   R++    +  ++  +       I   
Sbjct: 8   WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYR 67

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
            +L   + +       + +   ++I + NAG+       S +  G++  F VN LA    
Sbjct: 68  CDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSIC 127

Query: 239 TLQLENALIKGAKLFAR------------QQGAATSIYCAT 267
           T +   ++ +                      + T  Y AT
Sbjct: 128 TREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSAT 168

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 94.2 bits (234), Expect = 4e-23
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 24/191 (12%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQ-CIAM 179
            +   AI+TG++ GIG  TA   A  G +V +  R  ++  +   +IL    S Q   ++
Sbjct: 3   FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSV 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHL 233
             ++       +       KF  L+ILV NAG          G + + + ++ T  +N  
Sbjct: 63  VADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLR 122

Query: 234 AHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQ 293
           +   LT +            +  +G   +I    S   + P    Y         +KAA 
Sbjct: 123 SVIALTKKA-------VPHLSSTKGEIVNISSIASGLHATPDFPYYS-------IAKAAI 168

Query: 294 D---EALATKL 301
           D      A  L
Sbjct: 169 DQYTRNTAIDL 179

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.4 bits (231), Expect = 1e-22
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 126 AIVTGANTGIGFETARSLA-LHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
           A+VTG N GIG    R L  L    V+L  R + +   A+ ++  E  S      +L++ 
Sbjct: 6   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSP--RFHQLDID 63

Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYLTLQL 242
            L+S++   +  +K++  L++LV NAG+              E T + N      +  +L
Sbjct: 64  DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTEL 123

Query: 243 ENALIKGAK 251
              +    +
Sbjct: 124 LPLIKPQGR 132

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 90.8 bits (225), Expect = 7e-22
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA-QCIAM 179
            SN   I+TG++ GIG  TA   A  G  V +  RS ++  +    IL    S  Q  ++
Sbjct: 3   FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSV 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG------FSHTEDGFETTFQVNHL 233
             ++       +      K+F  +++LV NAG                D +  T ++N  
Sbjct: 63  VADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQ 122

Query: 234 AHFYLT 239
           A   +T
Sbjct: 123 AVIEMT 128

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (223), Expect = 1e-21
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 12/178 (6%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA  GIG   A +L L G +V L   +L+      + +  +    + + ++ ++  
Sbjct: 6   ALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD 65

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA 245
            + ++    +    F  L+ILV NAGV      + E  +E T Q+N ++    T    + 
Sbjct: 66  QQQLRDTFRKVVDHFGRLDILVNNAGV------NNEKNWEKTLQINLVSVISGTYLGLDY 119

Query: 246 LIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWK 303
           + K      +  G    I   +SL   +PV+        +       +  ALA  L  
Sbjct: 120 MSK------QNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMN 171

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

 Score = 89.6 bits (222), Expect = 2e-21
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L +  A++TG   GIG   A   A+ G  + +A        +A           + + ++
Sbjct: 3   LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA----AIRNLGRRVLTVK 58

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
            ++ +   V+ F ++    F   +ILV NAG++ L      T + ++ TF++N  + F +
Sbjct: 59  CDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLM 118

Query: 239 T 239
            
Sbjct: 119 A 119

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 2e-21
 Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 21/196 (10%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           + ++    ++TGA  GIG  TA   A    +++L   +     +  +K   +   A+   
Sbjct: 3   KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC--KGLGAKVHT 60

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNA--GVFGLGFSHTEDGFETTFQVNHLAHF 236
             ++    + +   A++ + +   ++ILV NA        F+  +   E TF+VN LAHF
Sbjct: 61  FVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 120

Query: 237 YLTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQD-- 294
           + T               +          + +  +S+P   +Y         SK A    
Sbjct: 121 WTTKAF-------LPAMTKNNHGHIVTVASAAGHVSVPFLLAYC-------SSKFAAVGF 166

Query: 295 -EALATKLWKLSEEMI 309
            + L  +L  L    +
Sbjct: 167 HKTLTDELAALQITGV 182

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.3 bits (221), Expect = 2e-21
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L     +VTG   GIG       A  G  +    R+  + N+ +SK   +K   Q    
Sbjct: 5   SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW--QKKGFQVTGS 62

Query: 180 ELNLCRLKSVKKFAEEYQKKFR-SLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHF 236
             +       +K  +     F   L+IL+ N G         +T + F      N  + +
Sbjct: 63  VCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAY 122

Query: 237 YLT 239
           +L+
Sbjct: 123 HLS 125

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 88.2 bits (218), Expect = 6e-21
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL    A+VTG + G+GF  A+ LA  GC V++A R+L++A++A  K+ TEK   + +A 
Sbjct: 2   DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL-TEKYGVETMAF 60

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
             ++   + VKK  E  ++KF  L+ +V  AG+           D F    +VN    +Y
Sbjct: 61  RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYY 120

Query: 238 L 238
           +
Sbjct: 121 V 121

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 88.1 bits (218), Expect = 6e-21
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 118 GR-DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQC 176
           GR +L    A+VTG + GIG+     LA  G  V    R+  + ND +++        + 
Sbjct: 2   GRWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW--RSKGFKV 59

Query: 177 IAMELNLCRLKSVKKFAEEYQKKFR-SLNILVLNAGVFGLG--FSHTEDGFETTFQVNHL 233
            A   +L      ++        F   LNILV NAG+        +T + +     +N  
Sbjct: 60  EASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFE 119

Query: 234 AHFYLT 239
           A ++L+
Sbjct: 120 AAYHLS 125

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 85.8 bits (212), Expect = 4e-20
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 7/121 (5%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A+VTG  +G+G E  + L   G +V  +  +        +++       + + + 
Sbjct: 4   LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVR 58

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
            ++             Q++  +LN+LV NAG+   G   +   + F    ++N  + F  
Sbjct: 59  HDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIG 118

Query: 239 T 239
            
Sbjct: 119 C 119

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 86.2 bits (213), Expect = 4e-20
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA-QCIAM 179
            S  + I+TG++ GIG   A   A  G +V +  R+ D+  +   +IL     A +  A+
Sbjct: 2   FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAV 61

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG----FSHTEDGFETTFQVNHLAH 235
             ++               KF  ++ILV NAG              + ++ TF++N  A 
Sbjct: 62  VADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAV 121

Query: 236 FYL 238
             +
Sbjct: 122 IEM 124

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score = 85.5 bits (211), Expect = 5e-20
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 22/188 (11%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DL+N N I   A  GIG +T+R L     +  +    ++    A++++    P       
Sbjct: 2   DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKAINPKVNITFH 60

Query: 180 ELNLCR-LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYL 238
             ++   +   KK  ++   + ++++IL+  AG+        +   E T  +N       
Sbjct: 61  TYDVTVPVAESKKLLKKIFDQLKTVDILINGAGI------LDDHQIERTIAINFTGLVNT 114

Query: 239 TLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQD---E 295
           T     A++          G   +  C+ +   ++     Y         SKAA      
Sbjct: 115 T----TAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVY-------SASKAAVVSFTN 163

Query: 296 ALATKLWK 303
           +LA     
Sbjct: 164 SLAKLAPI 171

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score = 84.9 bits (210), Expect = 7e-20
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 11/124 (8%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           G   +    +VTG   GIG   A++ A  G  V L      +  +    I          
Sbjct: 1   GL-FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-PEGKEVAEAI-------GGA 51

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAH 235
             +++L   +   +F EE       +++LV NA +   G   +     +    +VN  A 
Sbjct: 52  FFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAP 111

Query: 236 FYLT 239
            +L+
Sbjct: 112 MHLS 115

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 84.9 bits (209), Expect = 7e-20
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 19/197 (9%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIA 178
           +S  + +VTGAN GIG    + L        +I   R ++KA +     L     ++   
Sbjct: 1   MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-----LKSIKDSRVHV 55

Query: 179 MELNLCRLKSVKKFAEEYQKKFRS--LNILVLNAGV---FGLGFSHTEDGFETTFQVNHL 233
           + L +   KS+  F  +  +   S  L++L+ NAGV   +G               VN  
Sbjct: 56  LPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTT 115

Query: 234 AHFYLTLQLENALIKGAKLFA----RQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPS 289
           +   LT +L   L   A   +        AA     +    ++   SGS          S
Sbjct: 116 SVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMS 175

Query: 290 KAAQD---EALATKLWK 303
           KAA +     LA  L  
Sbjct: 176 KAAINMFGRTLAVDLKD 192

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 82.8 bits (204), Expect = 5e-19
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    AI+TGA  GIG E A + A  G  V+++  + D AN  + +I  ++   Q  A 
Sbjct: 8   RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI--QQLGGQAFAC 65

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFY 237
             ++   + +   A+    K   ++ILV NAG  G   F      F   +++N  + F+
Sbjct: 66  RCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFH 124

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 81.6 bits (201), Expect = 1e-18
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    AI+TG   GIG   A      G +V++  R  D    A   + T     Q    +
Sbjct: 4   LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQIQFFQ 60

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYL 238
            +        K  +  +K F  ++ LV NAG+         T   +     VN    F+ 
Sbjct: 61  HDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFG 120

Query: 239 TLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSY 279
           T       I+  ++  +  GA+     +    +  P  G+Y
Sbjct: 121 T----RLGIQ--RMKNKGLGASIINMSSIEGFVGDPSLGAY 155

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.9 bits (187), Expect = 1e-18
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 9  PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSG 56
           DS+    LPPGWEER   DG V+++NH  + TQW  PR      ++G
Sbjct: 4  VDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ-NVAITG 50

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (109), Expect = 8e-08
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          G LP GWE+    DG++ F N +     + DPR+
Sbjct: 10 GPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 1e-18
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKI---LTEKPS 173
            G  L    AIVTG  TGIG    + L   G  V++A R L++   A  ++   L     
Sbjct: 7   PGL-LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQ 65

Query: 174 AQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
           A+ I ++ N+   + V    +     F  +N LV N G   L  +   +  G+    + N
Sbjct: 66  ARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETN 125

Query: 232 HLAHFYLT 239
               FY+ 
Sbjct: 126 LTGTFYMC 133

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 81.7 bits (201), Expect = 1e-18
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
            ++   ++TG  +G+G  TA  LA  G ++ L   S +    + + +L   P A+ +   
Sbjct: 2   FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 61

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAG---VFGLGFSHTEDGFETTFQVNHLAHFY 237
            ++     V+ +     ++F  ++    NAG         S T   F+    +N    F 
Sbjct: 62  ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFL 121

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (200), Expect = 2e-18
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 9/135 (6%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           G   +    +VTG   GIG    R+    G RV++  +          ++         +
Sbjct: 1   GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAV 54

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG---FSHTEDGFETTFQVNHLA 234
            +  ++ +   VK    E  ++F  L+ +V NAG           +  GF    ++N L 
Sbjct: 55  FILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLG 114

Query: 235 HFYLTLQLENALIKG 249
            + LT      L K 
Sbjct: 115 TYTLTKLALPYLRKS 129

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score = 80.9 bits (199), Expect = 3e-18
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
              N   IVTG N GIG    R++A  G  V +  RS   A +   K+  E    +  A 
Sbjct: 6   SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-VKTKAY 64

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNA--GVFGLGFSHTEDGFETTFQVNHLAHFY 237
           + ++     V K  ++       ++ L+ NA   V       T + F   + VN    F 
Sbjct: 65  QCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFN 124

Query: 238 L 238
            
Sbjct: 125 T 125

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (182), Expect = 7e-18
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKV 54
          +   +  LP GWE   T+ G  Y+ NH  + T W  PR  +  ++
Sbjct: 2  EIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQM 46

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 5e-07
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 57 DLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKE 94
           LP GWE + +  G+  F N      T+ DPR     +
Sbjct: 8  PLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 79.7 bits (196), Expect = 7e-18
 Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 12/137 (8%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L     ++TG  +G+G          G +V +  +S ++  +  +           + +
Sbjct: 2   KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH-----GDNVLGI 56

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-------FSHTEDGFETTFQVNH 232
             ++  L+  K+ A     +F  ++ L+ NAG++              +  F+  F +N 
Sbjct: 57  VGDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINV 116

Query: 233 LAHFYLTLQLENALIKG 249
             + +       AL+  
Sbjct: 117 KGYIHAVKACLPALVAS 133

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 79.3 bits (195), Expect = 1e-17
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L +  AI+TG   GIG  TA+    +G +V++A  + D      + I           + 
Sbjct: 4   LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI---GSPDVISFVH 60

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG----FSHTEDGFETTFQVNHLAHF 236
            ++ + + V+   +    K   L+I+  N GV             + F+    +N    F
Sbjct: 61  CDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF 120

Query: 237 Y 237
            
Sbjct: 121 L 121

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 78.5 bits (193), Expect = 1e-17
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 11/117 (9%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           AIVT      G  +A  L+  G  V     S  + ++          +      +L    
Sbjct: 3   AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL--------EAFAETYPQLKPMS 54

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAHFYLT 239
            +   +  E     +  +++LV N      F     +  + +    +   +  F L 
Sbjct: 55  EQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALV 111

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 78.6 bits (193), Expect = 2e-17
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L+   A+ TGA  GIG   A  L   G  V++   S  KA + +   L +K  AQ +A++
Sbjct: 4   LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL-KKLGAQGVAIQ 62

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
            ++ +   V    ++    F  L+ ++ N+G+         T++ F+  F +N    F++
Sbjct: 63  ADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFV 122

Query: 239 TLQLENALIKGAKLFARQQGAA 260
             Q      +G ++      AA
Sbjct: 123 AQQGLKHCRRGGRIILTSSIAA 144

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 78.2 bits (192), Expect = 2e-17
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           GR L+   A+V+G   G+G    R++   G +V+      ++     +++     +    
Sbjct: 2   GR-LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAAR 55

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAH 235
            + L++ +    K   +     F  L++LV NAG+  +G         ++    VN    
Sbjct: 56  YVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGV 115

Query: 236 FYL 238
           F  
Sbjct: 116 FLG 118

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 78.1 bits (192), Expect = 2e-17
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           DLS    I+TG   G+G E AR     G RV+LA    ++      ++            
Sbjct: 2   DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQ 56

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFY 237
            L++   +  ++     +++F S++ LV NAG+    F    + + F    ++N    F 
Sbjct: 57  HLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFI 116

Query: 238 LTLQLENALIKG 249
               +  A+   
Sbjct: 117 GMKTVIPAMKDA 128

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.5 bits (193), Expect = 3e-17
 Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQ---- 175
                  +VTGA  G+G   A + A  G  V++     D           +K   +    
Sbjct: 4   RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR 63

Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHL 233
                 N   +++ +K  +     F  ++++V NAG+         +++ ++   +V+  
Sbjct: 64  GGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLR 123

Query: 234 AHFYLTLQLENALIKG 249
             F +T    + + K 
Sbjct: 124 GSFQVTRAAWDHMKKQ 139

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 75.1 bits (184), Expect = 3e-16
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L +   ++TGA  GIG  T    A  G R++          +A   +           + 
Sbjct: 3   LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVV 55

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYL 238
           +++    SV++   E       L+ +V  AG+    F      + +E   +VN    F +
Sbjct: 56  MDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLV 115

Query: 239 T 239
            
Sbjct: 116 A 116

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

 Score = 75.2 bits (184), Expect = 3e-16
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           +DL     ++TG++TG+G   A   A    +V++  RS +   +++ + + +K   + IA
Sbjct: 3   KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI-KKVGGEAIA 61

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHF 236
           ++ ++     V    +   K+F  L++++ NAG+     SH  +   +      N    F
Sbjct: 62  VKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF 121

Query: 237 Y 237
            
Sbjct: 122 L 122

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.2 bits (182), Expect = 4e-16
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           + S   A+VTGA  GIG +T ++L   G +V+   R+         +            +
Sbjct: 2   NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPV 55

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
            ++L    + +K           +++LV NA +  +      T++ F+ +F VN  + F 
Sbjct: 56  CVDLGDWDATEKALGG----IGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQ 111

Query: 238 LT 239
           ++
Sbjct: 112 VS 113

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 6e-16
 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 10/156 (6%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L     IVTGA+ GIG E A  LA  G  V++  RS +     +S  L E  +A    + 
Sbjct: 12  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL-ELGAASAHYIA 70

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
             +  +   ++F  +  K    L++L+LN         F         + +VN L++  L
Sbjct: 71  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 130

Query: 239 TLQLENALIKG-------AKLFARQQGAATSIYCAT 267
           T+     L +        + L  +      + Y A+
Sbjct: 131 TVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSAS 166

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 68.6 bits (168), Expect = 6e-16
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
          D+   LP GWE+++ +D  VY+VNH    TQW  PRT
Sbjct: 8  DALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT 44

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.8 bits (109), Expect = 8e-08
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
          G LP GWEK +  D ++ F N       + DPR 
Sbjct: 11 GPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT 44

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.3 bits (179), Expect = 1e-15
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 12/140 (8%)

Query: 121 LSNYNAIVTGANTGIGFETARSLA---LHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           L     ++TGA+ G G   A  LA     G  ++++ RS         ++  ++P  + +
Sbjct: 4   LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVV 63

Query: 178 AMELNLCRLKSVKK----FAEEYQKKFRSLNILVLNAGVFGLGFSH-----TEDGFETTF 228
               +L     V++      E  + +     +L+ NA   G                  +
Sbjct: 64  LAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYW 123

Query: 229 QVNHLAHFYLTLQLENALIK 248
            +N  +   LT    NA   
Sbjct: 124 ALNLTSMLCLTSGTLNAFQD 143

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 73.4 bits (179), Expect = 1e-15
 Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 6/183 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC- 184
           A++TG    IG   A  L   G RV++  R  + A   +   L    +   +  + +L  
Sbjct: 4   AVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL 63

Query: 185 ---RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQ 241
               L   +   +   + F   ++LV NA  +        D          +      L 
Sbjct: 64  SSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELF 123

Query: 242 LENAL--IKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALAT 299
             NA+  +   + FAR+QG   +        ++L  + +       C  + A       T
Sbjct: 124 GSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALGGLT 183

Query: 300 KLW 302
           +  
Sbjct: 184 RAA 186

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (177), Expect = 2e-15
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L+    +VTGA  GIG  T ++L   G RV+   R+    +  + +            +
Sbjct: 4   FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPV 57

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFY 237
            ++L   ++ ++           +++LV NA V  L      T++ F+ +F+VN  A   
Sbjct: 58  CVDLGDWEATERALGSVGP----VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQ 113

Query: 238 LT 239
           ++
Sbjct: 114 VS 115

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 72.1 bits (176), Expect = 3e-15
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A++TG+  GIG   A +    G RV +A  +L+ A    ++I          A+ 
Sbjct: 3   LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIA 57

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFY 237
           L++    S+ +   E   ++ S++ILV NA +F L      T + ++  F +N     +
Sbjct: 58  LDVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLF 116

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score = 72.1 bits (176), Expect = 3e-15
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
            L    A+VTG + GIG+     LA  G RV    R+  + ++ +      +        
Sbjct: 3   SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW--REKGLNVEGS 60

Query: 180 ELNLCRLKSVKKFAEEYQKKFR-SLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHF 236
             +L       K  +     F   LNILV NAGV         TE  +      N  A +
Sbjct: 61  VCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAY 120

Query: 237 Y 237
           +
Sbjct: 121 H 121

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 71.0 bits (173), Expect = 8e-15
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA  GIG   A  L   G  V +A  +   A    S+I   +     +A+++++  
Sbjct: 4   ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI--NQAGGHAVAVKVDVSD 61

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTF--QVNHLAHFYL 238
              V    E+ +K     +++V NAGV       +           +N     + 
Sbjct: 62  RDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWG 116

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.0 bits (159), Expect = 9e-15
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
          LPPGWE R TA G  ++V+H T  T +  PR
Sbjct: 3  LPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.8 bits (104), Expect = 3e-07
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
          G LP GWE   +  G+  F + +T   T+ DPR
Sbjct: 1  GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 70.1 bits (171), Expect = 1e-14
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 6/115 (5%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           GR LS    +VTGA +GIG       A  G  ++   R      +A++ +      A+ I
Sbjct: 1   GR-LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAI 54

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNH 232
           A+  ++   K+V+    E  ++F  L+ +   AGV     S           +  
Sbjct: 55  AVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRV 109

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 70.1 bits (171), Expect = 1e-14
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTGA +GIG E AR L   G RV +  R  +     + ++   +   +      ++  
Sbjct: 5   ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL--REAGVEADGRTCDVRS 62

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
           +  ++       +++  +++LV NAG  G G      ++ +    + N    F 
Sbjct: 63  VPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFR 116

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 2e-14
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
                 A +TG  TG+G      L+  G + ++A R +D       +I + +   +  A+
Sbjct: 22  SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI-SSQTGNKVHAI 80

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNA--GVFGLGFSHTEDGFETTFQVNHLAHFY 237
           + ++     V+    E  K     NI++ NA           + + ++T   +      +
Sbjct: 81  QCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAF 140

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 70.1 bits (171), Expect = 2e-14
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
             L    A+VTGA  GIG E A  L   GC+VI+   +  ++ + +   + +  S     
Sbjct: 14  ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAAC 72

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHF 236
           ++ N+  ++ + +  EE  K F  L+I+  N+GV   G     T + F+  F +N    F
Sbjct: 73  VKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQF 132

Query: 237 YL 238
           ++
Sbjct: 133 FV 134

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

 Score = 69.1 bits (168), Expect = 3e-14
 Identities = 19/87 (21%), Positives = 40/87 (45%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           L    A+VTG+ +GIG   A +LA  G  ++L         + +   L  +   + +   
Sbjct: 2   LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILV 207
            +L + ++V+   +   ++   ++ILV
Sbjct: 62  ADLSKGEAVRGLVDNAVRQMGRIDILV 88

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 67.8 bits (164), Expect = 9e-14
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 7/174 (4%)

Query: 125 NAIVTGANTGIGFETAR---SLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMEL 181
           + ++TG N G+G    +   +L      +   CR+ ++A   +  +     +   + ++L
Sbjct: 4   SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA-KELEDLAKNHSNIHILEIDL 62

Query: 182 NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYL 238
                        E   K + LN+L  NAG+        +        T Q N +    L
Sbjct: 63  RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 122

Query: 239 TLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAA 292
                  L K AK    Q              +   + G+          SK+A
Sbjct: 123 AKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSA 176

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 65.2 bits (158), Expect = 7e-13
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           +  +    +VTGA   IG  TA  LA  G  + L   + +    A + +   +   +  +
Sbjct: 1   KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV--REKGVEARS 58

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFY 237
              ++   ++V    +   + F  ++ L  NAG  G      +   +   +V  +    
Sbjct: 59  YVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTG 117

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

 Score = 64.8 bits (157), Expect = 8e-13
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 11/123 (8%)

Query: 126 AIVTGANTGIGFETARSLALHGCR-------VILACRSLDKANDAISKILTEKPSAQCIA 178
            ++TGA  GIG   A   A            ++L+ R+         +       A    
Sbjct: 4   LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC--RAEGALTDT 61

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHF 236
           +  ++  +  V++      +++  ++ LV NAGV   G     TE+ F+ T   N    F
Sbjct: 62  ITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTF 121

Query: 237 YLT 239
           +LT
Sbjct: 122 FLT 124

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 16 ELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
          +LPPGWE+R++ + G VYY NH T  +QW  P
Sbjct: 1  KLPPGWEKRMSRSSGRVYYFNHITNASQWERP 32

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 58 LPLGWEKSVSE-DGKITFYNKDTHVKTYTDP 87
          LP GWEK +S   G++ ++N  T+   +  P
Sbjct: 2  LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 2e-12
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 34/193 (17%)

Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           GR L     I+T A  GIG   A + A  G +VI    +  K  +     L + P  Q  
Sbjct: 2   GR-LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE-----LEKYPGIQTR 55

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAH 235
            ++       + KK  +++  +   L++L   AG    G      E  ++ +  +N  + 
Sbjct: 56  VLD------VTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSM 109

Query: 236 FYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCP--PSKAAQ 293
           + +      A +      A++ G   +I   +S      V+ S      RC    +KAA 
Sbjct: 110 YLMI----KAFLPKML--AQKSG---NIINMSS------VASSVKGVVNRCVYSTTKAAV 154

Query: 294 D---EALATKLWK 303
               +++A    +
Sbjct: 155 IGLTKSVAADFIQ 167

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 63.6 bits (154), Expect = 2e-12
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 15/119 (12%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
             + + +VTG N GIG   A+ LA  G +V +  R                       +E
Sbjct: 5   FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP-------------KGLFGVE 51

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFY 237
           +++    +V +     ++    + +LV NAG+    F    TE+ FE     N    F 
Sbjct: 52  VDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFR 110

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.5 bits (154), Expect = 2e-12
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 19/119 (15%)

Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
           + +   +V  A+ GIG   A  L+  G  V +  R+ +           ++   + +  +
Sbjct: 2   IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL---------KRSGHRYVVCD 52

Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNA--GVFGLGFSHTEDGFETTFQVNHLAHFY 237
                   ++K  +   +K + ++ILVLNA     G     T + F+       L    
Sbjct: 53  --------LRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIK 103

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

 Score = 63.1 bits (152), Expect = 4e-12
 Identities = 32/203 (15%), Positives = 58/203 (28%), Gaps = 33/203 (16%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME----- 180
           A+VTGA   +G   A  L   G  V L         +A+S  L  +     I ++     
Sbjct: 5   ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 64

Query: 181 ------------LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFET 226
                         +       +        +   ++LV NA  F       + EDG E 
Sbjct: 65  VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 124

Query: 227 T--------------FQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLS 272
                          F  N +A ++L     + +            +  ++  A +    
Sbjct: 125 CVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL 184

Query: 273 LPVSGSYFNNCCRCPPSKAAQDE 295
           L  +            +++A  E
Sbjct: 185 LGYTIYTMAKGALEGLTRSAALE 207

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 62.2 bits (150), Expect = 8e-12
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 23/113 (20%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +++G  TGIG  T + L   G +++       +    +S     K              
Sbjct: 4   IVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRK-------------- 49

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYL 238
               +  A+   K  + ++ LVL AG+                 VN+     L
Sbjct: 50  ----QAIADVLAKCSKGMDGLVLCAGL-----GPQTKVLGNVVSVNYFGATEL 93

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 61.4 bits (148), Expect = 1e-11
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 11/138 (7%)

Query: 120 DLSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           DLS   A+V G      +GF  A  L   G  V L+ ++     +A       +     +
Sbjct: 5   DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLA---EALGGAL 61

Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNA------GVFGLGFSHTEDGFETTFQVN 231
               ++ + + +       ++ F  L+ LV          + G         +    +V+
Sbjct: 62  LFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVS 121

Query: 232 HLAHFYLTLQLENALIKG 249
             +   +  + E  L +G
Sbjct: 122 AYSLVAVARRAEPLLREG 139

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 2e-11
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 3/154 (1%)

Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           R +    A++TG  +G+G  TA  L   G   +L             K+      A    
Sbjct: 1   RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADV 60

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG---VFGLGFSHTEDGFETTFQVNHLAH 235
                 +        +  +         +  A        G +HT + F+    VN +  
Sbjct: 61  TSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGT 120

Query: 236 FYLTLQLENALIKGAKLFARQQGAATSIYCATSL 269
           F +   +   + +       Q+G   +     + 
Sbjct: 121 FNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF 154

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 60.9 bits (147), Expect = 2e-11
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           +     A+VTGA+ GIG   A +LA  G +VI    S + A       +++   A    +
Sbjct: 1   NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQA-----ISDYLGANGKGL 55

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTF--QVNHLAHFY 237
            LN+    S++   E+ + +F  ++ILV NAG+            E     + N  + F 
Sbjct: 56  MLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFR 115

Query: 238 LTLQLENALIKG--------AKLFARQQGAATSIYCAT 267
           L+  +  A++K           +         + Y A 
Sbjct: 116 LSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAA 153

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 60.1 bits (145), Expect = 4e-11
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 11/152 (7%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
            +VTGA+ GIG   A SL   GC+V++      KA + +SK + E    Q I    ++ +
Sbjct: 4   VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI-EAYGGQAITFGGDVSK 62

Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFYLTLQLE 243
              V+   +     + +++++V NAG+          +  ++    +N    F  T    
Sbjct: 63  EADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAAT 122

Query: 244 NALIKGAK--------LFARQQGAATSIYCAT 267
             ++K  K        +         + Y A 
Sbjct: 123 KIMMKKRKGRIINIASVVGLIGNIGQANYAAA 154

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 60.0 bits (145), Expect = 4e-11
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)

Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
              N  A+VTGA  GIG E A+ LA     VI   R+    +  + +I  +    +    
Sbjct: 7   CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI--KSFGYESSGY 64

Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
             ++ + + + +   +   + ++++ILV NAG+           D +E   + N  + FY
Sbjct: 65  AGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFY 124

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.4 bits (143), Expect = 6e-11
 Identities = 10/120 (8%), Positives = 33/120 (27%), Gaps = 17/120 (14%)

Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
             +V G    +G    ++       V       ++   A             + +++   
Sbjct: 4   RVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASA------------SVIVKMTDS 51

Query: 185 RLKSVKKFAEEYQKKFRS--LNILVLNAGVFGLGFS---HTEDGFETTFQVNHLAHFYLT 239
             +   +   E  K      ++ ++  AG +  G +         +  ++ +       +
Sbjct: 52  FTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 111

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 57.5 bits (138), Expect = 3e-10
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
           A+VTG  +G+G   A +L   G RV++     +  +               I +E ++ R
Sbjct: 4   ALVTGGASGLGRAAALALKARGYRVVVLDLRREGED--------------LIYVEGDVTR 49

Query: 186 LKSVKKFAEEYQKKFRSLNILVLN-----AGVFGLGFSHTEDGFETTFQVNHLAHFYLTL 240
            + V++     Q++     ++          + G    H  + F    +VN L  F +  
Sbjct: 50  EEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLR 109

Query: 241 QLENALIKGAKLFARQQGAATSI 263
               A+ +       Q+G   + 
Sbjct: 110 LAAWAMRENPPDAEGQRGVIVNT 132

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

 Score = 56.5 bits (135), Expect = 6e-10
 Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 18/166 (10%)

Query: 121 LSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           LS    +VTG      I +  A+++   G  +    ++ DK    + +   +  S   + 
Sbjct: 3   LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQLGSDIVLQ 61

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV-------FGLGFSHTEDGFETTFQVN 231
            ++      S+     E  K +   +  V + G             + T +GF+    ++
Sbjct: 62  CDVAEDA--SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDIS 119

Query: 232 HLAHFYLTLQLENALIKGAKLF------ARQQGAATSIYCATSLDL 271
             +   +     + L  G+ L       A +     ++       L
Sbjct: 120 SYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASL 165

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.0 bits (134), Expect = 7e-10
 Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 17/123 (13%)

Query: 122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMEL 181
           S+   IV G    +G         +G  V+    S +   D+             I ++ 
Sbjct: 1   SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADS------------NILVDG 48

Query: 182 NLCRLKSVKKFAEEYQKKFR--SLNILVLNAGVFGLGFS---HTEDGFETTFQVNHLAHF 236
           N    +  +   E+     +   ++ +   AG +  G +         +   + +  +  
Sbjct: 49  NKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSA 108

Query: 237 YLT 239
              
Sbjct: 109 IAA 111

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 51.3 bits (121), Expect = 5e-08
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 120 DLSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
           DL    A + G   + G G+  A+SLA  G  +++            S    +   ++ +
Sbjct: 5   DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVL 64

Query: 178 A 178
            
Sbjct: 65  P 65

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (109), Expect = 6e-08
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
              W E  TADG  YY N+ T  + W  P+
Sbjct: 4  AVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 6e-08
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 126 AIVTGANTGIGFETARSLALHGCR---VILACRSLDKANDAISKI-LTEKPSAQCIAMEL 181
            ++TG ++GIG   A  LA    +   V    R L               P      ++L
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64

Query: 182 NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQ 241
           ++   KSV    E   +    + +     G+ G   +  ED   +   VN +    +   
Sbjct: 65  DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQA 124

Query: 242 LENALIK 248
               + +
Sbjct: 125 FLPDMKR 131

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

 Score = 50.5 bits (119), Expect = 7e-08
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 121 LSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDKANDAISKIL 168
           L     +V+G   ++ I F  AR     G +++L      +    I+  L
Sbjct: 4   LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL 53

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (109), Expect = 8e-08
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 20 GWEERVTADGCVYYVNHATEGTQWTHPR 47
          GW+   TADG VYY N  T  T WT P 
Sbjct: 15 GWKAAKTADGKVYYYNPTTRETSWTIPA 42

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.5 bits (74), Expect = 0.004
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 61 GWEKSVSEDGKITFYNKDTHVKTYTDPR 88
          GW+ + + DGK+ +YN  T   ++T P 
Sbjct: 15 GWKAAKTADGKVYYYNPTTRETSWTIPA 42

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
           A++ G    +G   A  LA  G  +++  R  +KA    ++       A    M
Sbjct: 4   ALLGGT-GNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGM 56

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 121 LSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
           L     ++ G   N  I +  A+S    G  +     + +     +  I  E        
Sbjct: 3   LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLN-ESLEKRVRPIAQELN--SPYV 59

Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG 211
            EL++ + +  K      +K   SL+ +V +  
Sbjct: 60  YELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVA 92

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 47.3 bits (111), Expect = 9e-07
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 126 AIVTGANTGIGFETARSLALHGCR-VILACRSLDKANDA 163
            +VTG   G+G + AR LA  G   ++L  RS   A+ A
Sbjct: 12  VLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGA 50

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 21 WEERVTADGCVYYVNHATEGTQWTHP 46
          W+E   A G +YY N  T+ + W  P
Sbjct: 4  WKEAKDASGRIYYYNTLTKKSTWEKP 29

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 2/42 (4%)

Query: 126 AIVTGA--NTGIGFETARSLALHGCRVILACRSLDKANDAIS 165
             + G     G G+  A+ L+    ++I             +
Sbjct: 5   CFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKN 46

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 21 WEERVTADGCVYYVNHATEGTQWTHP 46
          W E  + DG  YY N  T+ + W  P
Sbjct: 3  WTEHKSPDGRTYYYNTETKQSTWEKP 28

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

 Score = 40.6 bits (94), Expect = 7e-05
 Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)

Query: 117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQC 176
            G  +    A+V      +G  +A  LA  G  V+L  R LDKA            +A  
Sbjct: 17  AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQA----------AADS 66

Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHF 236
           +     +    +         +  +  + +     + GL     +  ++    +  +A +
Sbjct: 67  VNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAI-GLE-LLPQAAWQNESSIEIVADY 124

Query: 237 YLTLQL 242
                L
Sbjct: 125 NAQPPL 130

>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: WW domain-binding protein 4, WBP4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 21 WEERVTADGCVYYVNHATEGTQWTHP 46
          W E +T++G  YY +  +  +QW  P
Sbjct: 3  WVEGITSEGYHYYYDLISGASQWEKP 28

>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 19 PGWEERVTADGCVYYVNHATEGTQW 43
            WE  ++ +   YY+NH T+ T W
Sbjct: 13 GPWERAISPNKVPYYINHETQTTCW 37

>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 1, APBB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 0.002
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 16 ELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
          +LP GW       G  YY +  T  TQW  P
Sbjct: 2  DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPP 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	100.0
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	100.0
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	100.0
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	100.0
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	100.0
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	100.0
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	100.0
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	100.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	100.0
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	100.0
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	100.0
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	100.0
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	100.0
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	100.0
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	100.0
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	100.0
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	100.0
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	100.0
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	100.0
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	100.0
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	100.0
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	100.0
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	100.0
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	100.0
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	100.0
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	100.0
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	100.0
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	100.0
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	100.0
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	100.0
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	100.0
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	100.0
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	100.0
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	100.0
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	100.0
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	100.0
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	100.0
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	100.0
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	100.0
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	100.0
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	100.0
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	100.0
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	100.0
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	100.0
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	100.0
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	100.0
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.98
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.98
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.97
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.97
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.96
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.96
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.96
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.96
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.96
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.95
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.95
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.95
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.94
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.94
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.93
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.93
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.92
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.92
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.89
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.88
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.77
d2jmfa1	33	Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr	99.66
d1jmqa_	46	Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606	99.59
d1i5hw_	50	Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n	99.57
d1tk7a1	45	Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso	99.57
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.37
d2jmfa1	33	Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr	99.37
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.31
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	99.3
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.3
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.26
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.25
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.22
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.18
d1tk7a1	45	Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso	99.15
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.15
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.15
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.13
d1i5hw_	50	Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n	99.1
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.08
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.07
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.05
d2rm0w1	37	Formin binding protein FBP28 domain {Domestic mous	99.03
d1jmqa_	46	Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606	99.03
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.99
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.99
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.97
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.96
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.95
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.89
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.88
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.81
d1o6wa1	29	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.79
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	98.79
d1ywia1	28	Huntingtin-interacting protein HYPA/FBP11 {Human (	98.78
d1o6wa2	46	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.74
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	98.7
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.68
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	98.65
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	98.61
d2dk1a1	38	WW domain-binding protein 4, WBP4 {Human (Homo sap	98.51
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.49
d2ho2a1	33	Amyloid beta A4 precursor protein-binding family B	98.45
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	98.44
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	98.38
d2rm0w1	37	Formin binding protein FBP28 domain {Domestic mous	98.34
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.24
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.24
d1o6wa1	29	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.19
d1ywia1	28	Huntingtin-interacting protein HYPA/FBP11 {Human (	98.15
d1o6wa2	46	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.15
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.07
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.93
d1eg3a3	38	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.89
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.88
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.87
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.76
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.72
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	97.71
d2ho2a1	33	Amyloid beta A4 precursor protein-binding family B	97.71
d2dk1a1	38	WW domain-binding protein 4, WBP4 {Human (Homo sap	97.7
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.64
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.63
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.61
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.47
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.46
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.44
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.44
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.41
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.4
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.36
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.32
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.25
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.17
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.02
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.01
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.9
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.88
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.88
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.87
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.87
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.81
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.79
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.75
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.74
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.68
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.62
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.58
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.58
d1eg3a3	38	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	96.57
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.56
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.48
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.47
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.47
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.42
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.4
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.38
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.36
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.35
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.31
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.27
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.21
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.18
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.17
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.13
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.08
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.01
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.97
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.97
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.91
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.91
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	95.81
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.76
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.74
d2ysca1	26	Amyloid beta A4 precursor protein-binding family B	95.59
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.54
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.49
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.47
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.45
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.41
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.35
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.25
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.2
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.94
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.71
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.63
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	94.62
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.57
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.5
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.48
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.45
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.32
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.15
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.13
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	94.13
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.13
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.12
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.07
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.98
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	93.95
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.89
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	93.83
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.82
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.73
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.71
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	93.66
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.66
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.59
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	93.55
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	93.49
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.47
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.47
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.28
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	93.28
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	93.27
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.04
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.85
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.84
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.79
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.63
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	92.62
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.6
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	92.4
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	92.39
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.37
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	92.21
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	92.2
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.06
d1e0na_	27	Hypothetical protein Yjq8 (Set2p) {Baker's yeast (	91.93
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	91.89
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	91.86
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	91.81
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	91.7
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.65
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	91.64
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	91.59
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	91.56
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	91.51
d2ysca1	26	Amyloid beta A4 precursor protein-binding family B	91.42
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.37
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.33
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	91.28
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.25
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	91.1
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	91.08
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.9
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	90.87
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	90.84
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	90.79
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	90.71
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.68
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.6
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	90.48
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	90.43
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.29
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.0
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	89.99
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	89.91
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	89.79
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	89.78
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	89.75
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	89.73
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.58
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	89.25
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	89.18
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	89.15
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.13
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	88.97
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	88.7
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	88.35
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	88.32
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	88.31
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.19
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	88.11
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	88.08
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	87.95
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	87.91
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	87.62
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	87.44
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	87.16
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	87.01
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	86.65
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	86.6
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	86.57
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.54
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	86.4
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	86.07
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	85.49
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	85.29
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	85.06
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	85.02
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	84.52
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	84.5
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	84.03
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	83.83
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.77
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	83.14
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	82.94
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.71
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	82.56
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	82.07
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	81.86
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	81.52
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	81.39
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	81.24
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	81.14
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	81.0
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	80.83
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	80.7
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	80.45
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	80.31
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	80.08

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=100.00  E-value=1.6e-40  Score=293.51  Aligned_cols=208  Identities=19%  Similarity=0.211  Sum_probs=178.2

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|+||++|||||++|||+++|+.|+++|++|++++|+.++++++..++....++.++.++.||++|+++++++++++.++
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999888777789999999999999999999999999


Q ss_pred             cCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ||+||+||||||+.   +++.+++.++|+++|++|+.|+|+++|+++|+|+++        +|+.+..+.++...|+++|
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asK  160 (258)
T d1iy8a_          81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAK  160 (258)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHHH
T ss_pred             hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCCCchHHHHHH
Confidence            99999999999975   456788999999999999999999999999999876        6777788889999999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHHH--H-----HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALAT--K-----LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +|+. +++       +.+.++++.+.|+...++.....  .     ..+..+++.+. +++|+++|+|||++++|
T Consensus       161 aal~-~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~f  234 (258)
T d1iy8a_         161 HGVV-GLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAF  234 (258)
T ss_dssp             HHHH-HHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999 877       45677888888887776542211  1     01112222222 38999999999999886

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.8e-41  Score=294.42  Aligned_cols=207  Identities=21%  Similarity=0.271  Sum_probs=177.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.  +.++.+++||++++++++++++++.+
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~--g~~~~~~~~Dvs~~~~~~~~~~~~~~   84 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAIS   84 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999876  56899999999999999999999999


Q ss_pred             hcCCccEEEEccccCC-CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +||+||+||||||+.. ...+++.++|++++++|+.|+|+++|+++|+|+++        +|+.+..+.++...|+++|+
T Consensus        85 ~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKa  164 (255)
T d1fmca_          85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKA  164 (255)
T ss_dssp             HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHH
T ss_pred             HcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccccccccchhHHH
Confidence            9999999999999852 24588999999999999999999999999999986        66677888889999999999


Q ss_pred             cccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         270 DLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+. +++       +.+.++++.+.|++..++......-.+..+...+. +++|+++|+|||++++|
T Consensus       165 al~-~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~pl~R~g~pedvA~~v~f  230 (255)
T d1fmca_         165 AAS-HLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALF  230 (255)
T ss_dssp             HHH-HHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999 887       45677888888887766543211011222233332 48999999999999886

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.1e-40  Score=290.52  Aligned_cols=208  Identities=24%  Similarity=0.313  Sum_probs=175.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++.+.. +.++.++.||++|+++++++++++.+
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999888887654 56899999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccce-ecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFA-RQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~-~~~~~~~~~y~as  267 (328)
                      ++|+||+||||||+.  +++.+++.++|+++|++|+.|+|+++|+++|+|+++        +|+.+ ..+.++...|+++
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~~~~Y~as  159 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAAS  159 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccCccccchHHH
Confidence            999999999999984  667899999999999999999999999999999876        44443 3355678899999


Q ss_pred             CccccCCCC-------ccccccCccCCCCcccCCHHHHHH-HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+|+. +++       +.+.++++.+.|++..++...... ..+..+.+.+. +++|+++|+|||++++|
T Consensus       160 Kaal~-~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~f  228 (251)
T d1vl8a_         160 KGGVA-SLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVF  228 (251)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGGGHHHHHH
T ss_pred             HHhHH-HHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            99999 877       456778888888888776432211 11222333332 48999999999999887

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=100.00  E-value=4.2e-40  Score=291.20  Aligned_cols=207  Identities=14%  Similarity=0.160  Sum_probs=174.3

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh-HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD-KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.+ .++++.+++...  +.++.++.||++|+++++++++++.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~   80 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAI   80 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999854 566777777665  6689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~a  266 (328)
                      +++|+||+||||||+.  .++.+++.++|++++++|+.|+|+++|+++|+|+++         +|+.+..+.++...|++
T Consensus        81 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~~~Y~a  160 (261)
T d1geea_          81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAA  160 (261)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHH
T ss_pred             HHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCcccccccc
Confidence            9999999999999985  567889999999999999999999999999999875         55567778889999999


Q ss_pred             cCccccCCCC-------ccccccCccCCCCcccCCHHHHHHH-HHHHHHHHHH-HHhcccccccccccccC
Q psy4246         267 TSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +|+|+. +++       +.+.++++.+.|+...++....... .+..+++.+. +++|+++|+|||++|+|
T Consensus       161 sKaal~-~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~f  230 (261)
T d1geea_         161 SKGGMK-LMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAW  230 (261)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             CCccch-hhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999999 877       5567888888888877664322111 1122222222 48999999999999887

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.9e-40  Score=289.62  Aligned_cols=207  Identities=20%  Similarity=0.187  Sum_probs=157.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++...  +.++.++.||++++++++++++++.+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTVSS   81 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEeccCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999998775  56899999999999999999999999


Q ss_pred             hc-CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KF-RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~-g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +| |+||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+|+++        +|+.+..+.++...|+++
T Consensus        82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~as  161 (259)
T d1xq1a_          82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSAT  161 (259)
T ss_dssp             HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHHHHH
T ss_pred             HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccccccccccccccc
Confidence            98 7899999999985  667899999999999999999999999999999876        666777888889999999


Q ss_pred             CccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+|+. +++       +.+.+++|.+.|++..++........+..+...+ .+++|+++|||||++++|
T Consensus       162 Kaal~-~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~f  229 (259)
T d1xq1a_         162 KGALN-QLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAF  229 (259)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTCEEEEEECCSCC-------------------------CCGGGGHHHHHH
T ss_pred             ccchh-hhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence            99999 877       4566788888888776654322111112222222 359999999999999886

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-40  Score=290.95  Aligned_cols=201  Identities=22%  Similarity=0.250  Sum_probs=173.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ||+||++|||||++|||+++|+.|+++|++|++++|+++.++++.+++     +.++.++.+|++|+++++++++++.++
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   75 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL-----GANGKGLMLNVTDPASIESVLEKIRAE   75 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh-----CCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence            589999999999999999999999999999999999999998888777     346788999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|+||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+|+++        ||+.+..+.++.+.|+++|+
T Consensus        76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKa  155 (243)
T d1q7ba_          76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKA  155 (243)
T ss_dssp             TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHH
T ss_pred             cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCCHHHHHHHH
Confidence            99999999999985  567899999999999999999999999999999875        66777888889999999999


Q ss_pred             cccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHH-HHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKL-SEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+. +++       +.+.++++.+.|++..++..  +.+++. .+.+.+ .+++|+++|||||++++|
T Consensus       156 al~-~lt~~lA~ela~~gIrVN~I~PG~i~T~~~--~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~f  220 (243)
T d1q7ba_         156 GLI-GFSKSLAREVASRGITVNVVAPGFIETDMT--RALSDDQRAGILAQVPAGRLGGAQEIANAVAF  220 (243)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHH--HTSCHHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhCccCeEEEEEecceEechhh--hhhhhhHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999 877       45677888888887766532  222221 222222 248999999999999876

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=100.00  E-value=1.1e-39  Score=288.37  Aligned_cols=207  Identities=20%  Similarity=0.219  Sum_probs=177.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++...  +.++.++.||++|+++++++++++.+
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVAN   81 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeeCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999998776  67899999999999999999999999


Q ss_pred             hcC-CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KFR-SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g-~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      +++ +||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+|+++        +|+.+..+.++...|+++
T Consensus        82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~as  161 (259)
T d2ae2a_          82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGAT  161 (259)
T ss_dssp             HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccccccccchHHH
Confidence            987 799999999985  567899999999999999999999999999999886        677788888999999999


Q ss_pred             CccccCCCC-------ccccccCccCCCCcccCCHHHHHH----HHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         268 SLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATK----LWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+++. +++       +.+.++++.+.|++..++......    ..+..+++.+ .+++|+++|+|||++++|
T Consensus       162 Kaal~-~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~pedvA~~v~f  233 (259)
T d2ae2a_         162 KGAMD-QLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAF  233 (259)
T ss_dssp             HHHHH-HHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999 877       456678888888877765432110    1112222222 248999999999999887

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=3.4e-40  Score=290.38  Aligned_cols=206  Identities=18%  Similarity=0.232  Sum_probs=176.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++|+||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++.+.  +.++.++.+|++|+++++++++++.
T Consensus         5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~   82 (251)
T d2c07a1           5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKIL   82 (251)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999998765  5689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      ++||+||+||||||+.  .++.+++.++|++++++|+.|+|+++|+++|+|+++        +|+.+..+.++..+|+++
T Consensus        83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~as  162 (251)
T d2c07a1          83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSS  162 (251)
T ss_dssp             HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHH
T ss_pred             HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCCHHHHHH
Confidence            9999999999999985  567889999999999999999999999999999876        667778888899999999


Q ss_pred             CccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHH-HHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+|+. +++       +.+.++++.+.|+...++...  ...+ ..+.+.+. +++|+++|+|||++|+|
T Consensus       163 Kaal~-~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~--~~~~~~~~~~~~~~pl~R~~~pedvA~~v~f  229 (251)
T d2c07a1         163 KAGVI-GFTKSLAKELASRNITVNAIAPGFISSDMTD--KISEQIKKNIISNIPAGRMGTPEEVANLACF  229 (251)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCC-------CCHHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhhhCeEEEEEccCCEeccccc--ccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999 887       456778888888877765432  2222 22222222 49999999999999876

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=100.00  E-value=1.9e-39  Score=287.12  Aligned_cols=206  Identities=17%  Similarity=0.199  Sum_probs=178.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|+||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++...  +.++.++.||++|+++++++++++.++
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999998888765  678999999999999999999999999


Q ss_pred             cCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ||+||+||||||+.   +++.+++.++|+++|++|+.++|+++|+++|+|.++        +|+.+..+.++...|+++|
T Consensus        80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asK  159 (260)
T d1zema1          80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSK  159 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHHH
T ss_pred             hCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCcchHHHHHHH
Confidence            99999999999974   457789999999999999999999999999999876        6777888889999999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHHHHHH---------------HHHHHHHHH-HHhccccccccccc
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLW---------------KLSEEMIQS-VVSTWLEETTERGE  325 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~r~g~p~dia~~  325 (328)
                      +|+. +++       +.+.++++.+.|+...++........               ...+.+... +++|+++|+|||++
T Consensus       160 aal~-~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~  238 (260)
T d1zema1         160 GAII-ALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGV  238 (260)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHH
T ss_pred             HHHH-HHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence            9999 887       55678889899998888754322111               112222222 38999999999999


Q ss_pred             ccC
Q psy4246         326 VVF  328 (328)
Q Consensus       326 v~F  328 (328)
                      ++|
T Consensus       239 v~f  241 (260)
T d1zema1         239 VAF  241 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=100.00  E-value=3.2e-39  Score=285.03  Aligned_cols=204  Identities=22%  Similarity=0.307  Sum_probs=174.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |.|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++     +.++.++.||++|+++++++++++.+
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~~Dvt~~~~v~~~~~~~~~   75 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIALDVTDQASIDRCVAELLD   75 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEeeCCCHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999988888777     56889999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      ++|+||+||||||+.  +++.+++.++|++++++|+.|+++++|+++|+|.++         +|+.+..+.++...|+++
T Consensus        76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~as  155 (256)
T d1k2wa_          76 RWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCAT  155 (256)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             HhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccccccchhhh
Confidence            999999999999985  667899999999999999999999999999987653         666778888999999999


Q ss_pred             CccccCCCC-------ccccccCccCCCCcccCCHHHH--HHHH--------HHHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALA--TKLW--------KLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+|+. +++       +.+.++++.+.|+...++....  ....        +..+++.+. +++|+++|+|||++|+|
T Consensus       156 Kaal~-~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~p~evA~~v~f  233 (256)
T d1k2wa_         156 KAAVI-SLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIF  233 (256)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCHHHHHHHHHH
T ss_pred             hhHHH-HHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999 877       5567888888888887764221  1111        112222222 48999999999999987

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=100.00  E-value=7.9e-40  Score=288.01  Aligned_cols=203  Identities=18%  Similarity=0.142  Sum_probs=171.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|+||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++..   +.++.++.||++|+++++++++++.++
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999998888877743   458999999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask  268 (328)
                      ||+||+||||||+.  +++.+++.++|+++|++|+.|+|+++++++|+|+++         +|+.+..+.++...|+++|
T Consensus        80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~~~Y~asK  159 (251)
T d1zk4a1          80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASK  159 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCchhHHHHH
Confidence            99999999999985  667899999999999999999999999999999876         5667777888999999999


Q ss_pred             ccccCCCCc---------cccccCccCCCCcccCCHHHHHHHHH--HHH-HHHHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVSG---------SYFNNCCRCPPSKAAQDEALATKLWK--LSE-EMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +++. +++.         .+.++++.+.|+...++..  +....  ... .....+++|+++|||||++++|
T Consensus       160 aal~-~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~--~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~f  228 (251)
T d1zk4a1         160 GAVR-IMSKSAALDCALKDYDVRVNTVHPGYIKTPLV--DDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVY  228 (251)
T ss_dssp             HHHH-HHHHHHHHHHHHTTCSEEEEEEEECCBCCHHH--HTSTTHHHHHTSTTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHh-cchHHHHHHHhcCCCcEEEEEEeCCCCCChhH--HhcCCHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence            9998 7763         3456788888877766432  22211  111 1112358999999999999886

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=100.00  E-value=2.8e-39  Score=285.61  Aligned_cols=204  Identities=17%  Similarity=0.222  Sum_probs=172.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++.+.  +.++.++.||++|+++++++++++.++||
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            4899999999999999999999999999999999999999999999765  66899999999999999999999999999


Q ss_pred             CccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH--HHhc--------cccceecccccchhhhccCc
Q psy4246         202 SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENA--LIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       202 ~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~--~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+  |.++        +|+.+..+.++...|+++|+
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~~~Y~asKa  158 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKH  158 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccchhHHHHHH
Confidence            999999999985  56789999999999999999999999999997  4443        66677888899999999999


Q ss_pred             cccCCCC-------ccccccCccCCCCcccCCHHHH--HHH--------HHHHHHHHHH-HHhcccccccccccccC
Q psy4246         270 DLSLPVS-------GSYFNNCCRCPPSKAAQDEALA--TKL--------WKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+. +++       +.+.++++.+.|+...++....  +..        .+..+++.+. +++|+++|+|||++|+|
T Consensus       159 al~-~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~PlgR~~~pedia~~v~f  234 (257)
T d2rhca1         159 GVV-GFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAY  234 (257)
T ss_dssp             HHH-HHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999 877       4566788888888776654211  111        1111222222 38999999999999887

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=100.00  E-value=1.9e-39  Score=284.93  Aligned_cols=204  Identities=18%  Similarity=0.194  Sum_probs=163.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|+||++|||||++|||+++|+.|+++|++|++++|+..+.  ....+...  +.++.++.||++|+++++++++++.++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~--~~~~~~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~   77 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEAAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVIST   77 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH--HHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH--HHHHHHHc--CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999986532  22233333  678999999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ||+||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+|+++        +|+.+..+.++...|+++|+
T Consensus        78 ~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKa  157 (247)
T d2ew8a1          78 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKA  157 (247)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCcccccchhhhc
Confidence            99999999999985  567899999999999999999999999999999876        67777888899999999999


Q ss_pred             cccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHH--HHHhcccccccccccccC
Q psy4246         270 DLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ--SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~g~p~dia~~v~F  328 (328)
                      |+. +++       +.+.++++.+.|+...++...........+...+  .+++|+++|||||++++|
T Consensus       158 al~-~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~l~r~~~pedvA~~v~f  224 (247)
T d2ew8a1         158 ANI-GFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAF  224 (247)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECCC------------------CTTSSSCSCCCTHHHHHHHHH
T ss_pred             cHH-HHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchhHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence            999 887       4566788888888776654322211112222211  138999999999999886

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=2.7e-39  Score=286.23  Aligned_cols=206  Identities=18%  Similarity=0.212  Sum_probs=170.0

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      |+||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++.+.. +.++.++.||++|+++++++++++.++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999997 456677777776553 668999999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ||+||+||||||+.  +++.+++.++|+++|++|+.|+|+++|+++|+|+++        +|+.+..+.++...|+++|+
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKa  160 (260)
T d1x1ta1          81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKH  160 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccCCcchhhhhhh
Confidence            99999999999985  567889999999999999999999999999999986        67778888899999999999


Q ss_pred             cccCCCC-------ccccccCccCCCCcccCCHHHH--HHHHH--------HHHH-HHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVS-------GSYFNNCCRCPPSKAAQDEALA--TKLWK--------LSEE-MIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~-~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+. +++       +.+.++++.+.|+...++....  ....+        ...+ +.+ .+++|+++|+|||++++|
T Consensus       161 al~-~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~f  237 (260)
T d1x1ta1         161 GVV-GFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVF  237 (260)
T ss_dssp             HHH-HHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCCBCHHHHHHHHHH
T ss_pred             hHH-HhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999 877       4566788888888777663211  11110        1111 122 248999999999999886

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-39  Score=282.38  Aligned_cols=201  Identities=19%  Similarity=0.216  Sum_probs=169.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ..|+||++|||||++|||+++|+.|+++|++|++++|+++.++++.+++      .++.++.||++|+++++++++++.+
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~   75 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIR   75 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999988877766553      3578899999999999999999999


Q ss_pred             hcCCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask  268 (328)
                      +||+||+||||||+.   .++.+++.++|+++|++|+.|+|+++|+++|+|+++       +|+.+..+.++...|+++|
T Consensus        76 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~~~~~~Y~asK  155 (250)
T d1ydea1          76 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATK  155 (250)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTCHHHHHHH
T ss_pred             hcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccccccCcchhHHHH
Confidence            999999999999974   345689999999999999999999999999999876       6667778888999999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHHHHH-------HHHHHHH-HHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKL-------WKLSEEM-IQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~r~g~p~dia~~v~F  328 (328)
                      +|+. +++       +.+.++++.+.|+...++..  +.+       .+..++. ...+++|+++|+|||++++|
T Consensus       156 aal~-~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~--~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eva~~v~f  227 (250)
T d1ydea1         156 GAVT-AMTKALALDESPYGVRVNCISPGNIWTPLW--EELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVF  227 (250)
T ss_dssp             HHHH-HHHHHHHHHHGGGTCEEEEEEECSBCCHHH--HHHHTTSSSHHHHHHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred             hhHH-HHHHHHHHHhcccCeEEEEEeeCCCCChhH--HHHhhcCCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            9999 877       45667888888887766532  221       1122222 22358999999999999886

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1e-39  Score=285.66  Aligned_cols=201  Identities=16%  Similarity=0.162  Sum_probs=167.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++       ++.++.||++|+++++++++++.+
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~   73 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALA   73 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998887766543       456789999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ++|+||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+|+++       .|..+..+.++...|+++|+
T Consensus        74 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~~~~~~~Y~asKa  153 (242)
T d1ulsa_          74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGNLGQANYAASMA  153 (242)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCCTTCHHHHHHHH
T ss_pred             hcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccCCCCCcchHHHHH
Confidence            999999999999985  567899999999999999999999999999999886       22244667778999999999


Q ss_pred             cccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+. +++       +.+.++++.+.|+...++..... ..+..++..+ .+++|+++|+|||++|+|
T Consensus       154 al~-~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~-~~~~~~~~~~~~pl~R~~~pedia~~v~f  218 (242)
T d1ulsa_         154 GVV-GLTRTLALELGRWGIRVNTLAPGFIETRMTAKV-PEKVREKAIAATPLGRAGKPLEVAYAALF  218 (242)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS-CHHHHHHHHHTCTTCSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHhhhCcEEEEEeeCcccChhhhcC-CHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999 877       45667888888887766532110 0111222222 249999999999999886

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.4e-39  Score=283.34  Aligned_cols=208  Identities=17%  Similarity=0.198  Sum_probs=168.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC-CCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK-PSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.... .+.++.++.+|++++++++++++++.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999987763 235799999999999999999999999


Q ss_pred             hcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------ccc-ceecccccchhh
Q psy4246         199 KFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKL-FARQQGAATSIY  264 (328)
Q Consensus       199 ~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~-~~~~~~~~~~~y  264 (328)
                      +||+||+||||||+.      .++.+.+.++|+++|++|+.|+|+++|+++|+|+++       +|. .+..+.++...|
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~~~~~~Y  161 (264)
T d1spxa_          82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYY  161 (264)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCTTSHHH
T ss_pred             HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccccCCCchhh
Confidence            999999999999974      234567899999999999999999999999999876       333 346677888999


Q ss_pred             hccCccccCCCC-------ccccccCccCCCCcccCCHHH--------HHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEAL--------ATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +++|+|+. +++       +.+.++++.+.|+...++...        .....+..+.+.+. +++|+++|+|||++|+|
T Consensus       162 ~asKaal~-~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~f  240 (264)
T d1spxa_         162 SIAKAAID-QYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAF  240 (264)
T ss_dssp             HHHHHHHH-HHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCBCHHHHHHHHHH
T ss_pred             hhhhhhHH-HHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999999 877       456778888888887765321        11112222223222 48999999999999987

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=100.00  E-value=1.7e-39  Score=287.54  Aligned_cols=209  Identities=18%  Similarity=0.226  Sum_probs=171.9

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |.++|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.. +.++.++.||++|+++++++++++
T Consensus         3 ~~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~   81 (260)
T d1h5qa_           3 FTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQI   81 (260)
T ss_dssp             EEECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999988888886654 568999999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---ccc-------------ceeccc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKL-------------FARQQG  258 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~-------------~~~~~~  258 (328)
                      .++||+||+||||||+.  .++.+++.++|++++++|+.|+|++++.++|+|.++   +++             ....+.
T Consensus        82 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~~~~  161 (260)
T d1h5qa_          82 DADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGS  161 (260)
T ss_dssp             HHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEE
T ss_pred             HHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccccccC
Confidence            99999999999999985  567899999999999999999999999999998654   111             112234


Q ss_pred             ccchhhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         259 AATSIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       259 ~~~~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++...|+++|+|+. +++       +.+.++++.+.|+...++..... ..+..+...+. +++|+++|||||++++|
T Consensus       162 ~~~~~Y~asKaal~-~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~-~~~~~~~~~~~~pl~R~g~pedvA~~v~f  237 (260)
T d1h5qa_         162 LTQVFYNSSKAACS-NLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM-DKKIRDHQASNIPLNRFAQPEEMTGQAIL  237 (260)
T ss_dssp             CSCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS-CHHHHHHHHHTCTTSSCBCGGGGHHHHHH
T ss_pred             ccccchhhhhhhHH-HHHHHHHHHhchhCeEEeecCCCcccCcchhcc-CHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            56789999999999 777       45667888888887766532110 11122223222 49999999999999887

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=100.00  E-value=9.2e-39  Score=281.93  Aligned_cols=202  Identities=17%  Similarity=0.162  Sum_probs=172.0

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |++|||||++|||+++|++|+++|++|++++|++++++++.+++.+.  +.++.++.||++|+++++++++++.++||+|
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence            78999999999999999999999999999999999999999998775  6689999999999999999999999999999


Q ss_pred             cEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhccCcccc
Q psy4246         204 NILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       204 d~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      |+||||||+.  +++.++++++|+++|++|+.|+|+++|+++|+|.+.         +|+.+..+.++...|+++|+|+.
T Consensus        80 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~  159 (255)
T d1gega_          80 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVR  159 (255)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHH
T ss_pred             cEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCcccccchhCHHHHH
Confidence            9999999985  567899999999999999999999999999988765         66677788889999999999999


Q ss_pred             CCCC-------ccccccCccCCCCcccCCHHHH--HHHHH--------HHHHHHHH-HHhcccccccccccccC
Q psy4246         273 LPVS-------GSYFNNCCRCPPSKAAQDEALA--TKLWK--------LSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~-------g~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                       +++       +.+.++++.+.|+...++....  +...+        ..+++.+. +++|+++|+|||++++|
T Consensus       160 -~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~peevA~~v~f  232 (255)
T d1gega_         160 -GLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSY  232 (255)
T ss_dssp             -HHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             -hhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence             877       5567788888888876653211  11111        11122222 38999999999999886

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.2e-39  Score=285.25  Aligned_cols=199  Identities=17%  Similarity=0.212  Sum_probs=173.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ..|+||++|||||++|||+++|+.|+++|++|++++|++++++++.+++     +.++.++.||++|+++++++++++.+
T Consensus         2 G~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   76 (244)
T d1nffa_           2 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVT   76 (244)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999888877776     34788999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++|+||+||||||+.  .++.+++.++|+++|++|+.|+|+++|.++|+|+++        +|+.+..+.++...|+++|
T Consensus        77 ~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asK  156 (244)
T d1nffa_          77 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATK  156 (244)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred             HhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccccccchhhHH
Confidence            999999999999985  667899999999999999999999999999999886        7778888889999999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +++. +++       +.+.++++.+.|++..++..  +.+   .+...+.+++|+++|+|||++|+|
T Consensus       157 aal~-~ltk~lA~el~~~gIrVN~I~PG~i~T~~~--~~~---~~~~~~~pl~R~~~p~diA~~v~f  217 (244)
T d1nffa_         157 FAVR-GLTKSTALELGPSGIRVNSIHPGLVKTPMT--DWV---PEDIFQTALGRAAEPVEVSNLVVY  217 (244)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECCBCSGGG--TTS---CTTCSCCSSSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCEEEEEEeeCCccChhH--hhh---hHHHHhccccCCCCHHHHHHHHHH
Confidence            9999 887       45667888888887766532  111   112223358999999999999886

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=100.00  E-value=8.4e-40  Score=287.93  Aligned_cols=201  Identities=20%  Similarity=0.171  Sum_probs=171.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++     +.++.+++||++++++++++++++.++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEcccCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999998887776665     568899999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ||+||+||||||+.  .++.+++.++|++++++|+.|+|+++|+++|+|+++        +|+.+..+.++..+|+++|+
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKa  156 (254)
T d1hdca_          77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKW  156 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccccchhhHHHHHH
Confidence            99999999999985  567899999999999999999999999999999876        77788888899999999999


Q ss_pred             cccCCCC-------ccccccCccCCCCcccCCHHHHHHHHH-HHHHH-HHHHHhccc-ccccccccccC
Q psy4246         270 DLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWK-LSEEM-IQSVVSTWL-EETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~r~g-~p~dia~~v~F  328 (328)
                      |+. +++       +.+.++++.+.|+...++..  ..... ..+.. ...+++|++ +|+|||++++|
T Consensus       157 al~-~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~--~~~~~~~~~~~~~~~pl~R~g~~PedvA~~v~f  222 (254)
T d1hdca_         157 GVR-GLSKLAAVELGTDRIRVNSVHPGMTYTPMT--AETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVK  222 (254)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHH--HHHTCCCSTTSCTTSTTSSCB-CHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhCCCceEEEEeeeCcccCccc--hhcCHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence            999 877       45667888888887766532  22111 11111 122489998 69999999887

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.9e-38  Score=282.74  Aligned_cols=208  Identities=21%  Similarity=0.246  Sum_probs=174.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC-CCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK-PSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.. ++.++.++.||++|+++++++++++.+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999987763 235799999999999999999999999


Q ss_pred             hcCCccEEEEccccC--C--CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         199 KFRSLNILVLNAGVF--G--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      +||+||+||||||..  .  ...+.+.++|++++++|+.|+|+++|+++|+|+++        ||+.+..+.++...|++
T Consensus        81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~~~~~Y~a  160 (274)
T d1xhla_          81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYAC  160 (274)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTTSHHHHH
T ss_pred             HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccCCCCceehh
Confidence            999999999999974  2  23456889999999999999999999999999876        55566777888999999


Q ss_pred             cCccccCCCC-------ccccccCccCCCCcccCCHHHH--------HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALA--------TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|+|+. +++       +.+.+++|.+.|+...++....        +...+..+...+ .+++|+++|+|||++|+|
T Consensus       161 sKaal~-~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPlgR~g~pediA~~v~f  237 (274)
T d1xhla_         161 AKAALD-QYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVF  237 (274)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHH
T ss_pred             hhhHHH-HHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH
Confidence            999999 877       5567888989898887764322        112222211111 258999999999999987

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.6e-38  Score=282.91  Aligned_cols=208  Identities=18%  Similarity=0.206  Sum_probs=173.0

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC-CCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK-PSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.. .+.++.++.||++|+++++++++++.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999987653 345799999999999999999999999


Q ss_pred             hcCCccEEEEccccCC--CC----CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhh
Q psy4246         199 KFRSLNILVLNAGVFG--LG----FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIY  264 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~--~~----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y  264 (328)
                      +||+||+||||||+..  ++    .+.+.++|++++++|+.|+|+++|+++|+|+++        |+..+..+.++...|
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~~~~~~Y  161 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYY  161 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCCSSHHH
T ss_pred             HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCCCCcchh
Confidence            9999999999999852  22    356777899999999999999999999999876        334567778889999


Q ss_pred             hccCccccCCCC-------ccccccCccCCCCcccCCHHHH--------HHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALA--------TKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|+|+. +++       +.+.+++|.+.|++..++....        +...+......+ .+++|+++|+|||++++|
T Consensus       162 ~asKaal~-~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~pediA~~v~f  240 (272)
T d1xkqa_         162 AIAKAALD-QYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILF  240 (272)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHH
T ss_pred             hhHHHHHH-HHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            99999999 877       4566788888898887764321        111111111111 248999999999999987

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-38  Score=278.15  Aligned_cols=200  Identities=18%  Similarity=0.176  Sum_probs=165.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|+||++|||||++|||+++|+.|+++|++|++++|+++..+ ..+++       ...+++||++|+++++++++++.++
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAI-------GGAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHH-------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHc-------CCeEEEEeCCCHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999999999976543 33333       2356899999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      ||+||+||||||+.  +++.+++.++|+++|++|+.|+|+++|+++|+|+++        +|+.+..+.++...|+++|+
T Consensus        74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKa  153 (248)
T d2d1ya1          74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKG  153 (248)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHHH
T ss_pred             cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccccccchhHHHHH
Confidence            99999999999985  567899999999999999999999999999999886        66677888899999999999


Q ss_pred             cccCCCC-------ccccccCccCCCCcccCCHHHHHHH----H-HHHHHHHHH-HHhcccccccccccccC
Q psy4246         270 DLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKL----W-KLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+. +++       +.+.++++.+.|++..++.......    . +..+...+. +++|+++|+|||++|+|
T Consensus       154 al~-~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~f  224 (248)
T d2d1ya1         154 GLV-NLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLF  224 (248)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999 877       5567888888888877654322110    1 111122222 38999999999999886

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=100.00  E-value=2.3e-38  Score=277.35  Aligned_cols=200  Identities=22%  Similarity=0.254  Sum_probs=169.9

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEee-CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      ++||||||++|||+++|++|+++|++|++.+ |+.+.++++.+++...  +.++.++.||++|+++++++++++.++||+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999875 5667778888887765  678999999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      ||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+|+++        ||+.+..+.++...|+++|+|+.
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~  159 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVI  159 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHH
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCCCCHHHHHHHHHHH
Confidence            99999999985  567899999999999999999999999999999875        67778888899999999999999


Q ss_pred             CCCC-------ccccccCccCCCCcccCCHHHHHHHHHHH-HHHHHH-HHhcccccccccccccC
Q psy4246         273 LPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLS-EEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                       +++       +.+.++++.+.|++..++.  .+.+.+.. +...+. +++|+++|+|||++++|
T Consensus       160 -~ltk~lA~el~~~gIrvN~I~PG~i~T~~--~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~f  221 (244)
T d1edoa_         160 -GFSKTAAREGASRNINVNVVCPGFIASDM--TAKLGEDMEKKILGTIPLGRTGQPENVAGLVEF  221 (244)
T ss_dssp             -HHHHHHHHHHHTTTEEEEEEEECSBCSHH--HHTTCHHHHHHHHTSCTTCSCBCHHHHHHHHHH
T ss_pred             -HChHHHHHHHhhhCcEEEEEecceeccHH--HHHhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence             887       4566788888888776643  33332222 222222 38999999999999886

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-37  Score=273.44  Aligned_cols=206  Identities=18%  Similarity=0.240  Sum_probs=170.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+...+.++.+++||++++++++++++++.++
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999998866679999999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------cccceec--ccccchhhh
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----------AKLFARQ--QGAATSIYC  265 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------ss~~~~~--~~~~~~~y~  265 (328)
                      ||+||+||||||..  +++.++++++|++.+++|+.|+|+++++++|+|++.          +|+.+..  +..+...|+
T Consensus        87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~~~~~~Y~  166 (257)
T d1xg5a_          87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYS  166 (257)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHHH
T ss_pred             cCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCCcccHHHH
Confidence            99999999999984  667899999999999999999999999999998764          4444432  345677899


Q ss_pred             ccCccccCCCC---------ccccccCccCCCCcccCCHHHHHHHHH-HHHHHHHH-HHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVS---------GSYFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++|+++. +++         +.+.++++.+.|+...++....  .++ ..++.... +++|+++|||||++++|
T Consensus       167 ~sKaal~-~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~--~~~~~~~~~~~~~~~~r~~~pedvA~~v~f  237 (257)
T d1xg5a_         167 ATKYAVT-ALTEGLRQELREAQTHIRATCISPGVVETQFAFK--LHDKDPEKAAATYEQMKCLKPEDVAEAVIY  237 (257)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHH--HTTTCHHHHHHHHC---CBCHHHHHHHHHH
T ss_pred             HHHHHHH-hCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhh--cChhhHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999999 776         2345667777777776665332  222 12222222 48999999999999876

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=100.00  E-value=1.8e-38  Score=279.54  Aligned_cols=202  Identities=19%  Similarity=0.206  Sum_probs=170.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|+||++|||||++|||+++|+.|+++|++|++++|+++.++++.+++     +.++.++.+|++|+++++++++++.++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999988888777     557889999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCcc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      ||+||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+|+++       +|+.+..+.++...|+++|+|
T Consensus        78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaa  157 (253)
T d1hxha_          78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAA  157 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCTTBHHHHHHHHH
T ss_pred             hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCccccccccchhHH
Confidence            99999999999985  567899999999999999999999999999999865       677788888999999999999


Q ss_pred             ccCCCCcc---------ccccCccCCCCcccCCHHHHHHHHH-HHHHHHH-----HHHhcccccccccccccC
Q psy4246         271 LSLPVSGS---------YFNNCCRCPPSKAAQDEALATKLWK-LSEEMIQ-----SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~r~g~p~dia~~v~F  328 (328)
                      +. +++..         |.+++|.+.|+...++..... +.+ ..++...     .+++|+++|||||++++|
T Consensus       158 l~-~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~-~~~~~~~~~~~~~~~~~~~gr~~~pedvA~~v~f  228 (253)
T d1hxha_         158 VS-ALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQAS-LPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLF  228 (253)
T ss_dssp             HH-HHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHH-SCTTCCHHHHBCBTTTBTTCCEECHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhh-CcchhhHHHHHhCccccccCCCCCHHHHHHHHHH
Confidence            99 87732         346788888887766542211 101 1111111     127899999999999887

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.1e-38  Score=275.33  Aligned_cols=193  Identities=18%  Similarity=0.220  Sum_probs=157.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +|+||++|||||++|||+++|+.|+++|++|++++|+.+.             ..++..+.+|++|+++++++++++.++
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~   70 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA-------------PKGLFGVEVDVTDSDAVDRAFTAVEEH   70 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC-------------CTTSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch-------------hcCceEEEEecCCHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999998654             235678999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~  269 (328)
                      +|+||+||||||+.  .++.+.+.++|++++++|+.++|+++|+++|+|+++        +|+.+..+.++...|+++|+
T Consensus        71 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKa  150 (237)
T d1uzma1          71 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKA  150 (237)
T ss_dssp             HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHHHH
T ss_pred             cCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCcccHHHHHHHH
Confidence            99999999999985  567899999999999999999999999999999987        67777888889999999999


Q ss_pred             cccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHH-HHHHH-HHHhcccccccccccccC
Q psy4246         270 DLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLS-EEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      |+. +++       +.+.++++.+.|+...++..  +.+.+.. +...+ .+++|+++|||||++++|
T Consensus       151 al~-~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~--~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~f  215 (237)
T d1uzma1         151 GVI-GMARSIARELSKANVTANVVAPGYIDTDMT--RALDERIQQGALQFIPAKRVGTPAEVAGVVSF  215 (237)
T ss_dssp             HHH-HHHHHHHHHHGGGTEEEEEEEECSBCCHHH--HHSCHHHHHHHGGGCTTCSCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHhhhhcCCceeeeeeeCcCCChhh--hccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999 877       44667788888877766532  2222222 22222 238999999999999876

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=100.00  E-value=9.7e-38  Score=278.39  Aligned_cols=203  Identities=15%  Similarity=0.222  Sum_probs=165.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++     +.++..+.+|+++.++++++++++.+
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~   75 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH-----GDNVLGIVGDVRSLEDQKQAASRCVA   75 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeeEEecccccHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998888777665     56899999999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-------CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhh
Q psy4246         199 KFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIY  264 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~-------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y  264 (328)
                      +||+||+||||||+...       ..+.+++.|+++|++|+.|+|+++|+++|+|+++       +|..+..+.++...|
T Consensus        76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~~~~~~~~Y  155 (276)
T d1bdba_          76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLY  155 (276)
T ss_dssp             HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSTTSSCHHH
T ss_pred             HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhccCCCCCchH
Confidence            99999999999998521       2345556799999999999999999999999775       555777888899999


Q ss_pred             hccCccccCCCC-------ccccccCccCCCCcccCCH------HHHHHHH---HHHHHHHH-HHHhccccccccccccc
Q psy4246         265 CATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDE------ALATKLW---KLSEEMIQ-SVVSTWLEETTERGEVV  327 (328)
Q Consensus       265 ~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~~-~~~~r~g~p~dia~~v~  327 (328)
                      +++|+|+. +++       +.+ ++++.+.|+...++.      ....+..   +..+.+.+ .+++|+++|+|||++++
T Consensus       156 ~asKaal~-~ltr~lA~ela~~-IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeva~~v~  233 (276)
T d1bdba_         156 TAAKHAIV-GLVRELAFELAPY-VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYV  233 (276)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTTT-CEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTSSCCCGGGGSHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHhhcc-eEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence            99999999 777       344 778888887766542      1111111   11122222 24899999999999988


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       234 f  234 (276)
T d1bdba_         234 F  234 (276)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=100.00  E-value=5e-37  Score=271.01  Aligned_cols=207  Identities=19%  Similarity=0.187  Sum_probs=175.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||+||||||++|||+++|++|+++|++|++++|++++++++.+++...  +.++.++.||+++.++++++++++.+
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~--~~~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeecCCHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999999998888766  56888999999999999999999999


Q ss_pred             hc-CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhcc
Q psy4246         199 KF-RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~-g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~as  267 (328)
                      ++ |.+|+||||||..  .++.+++.++|++++++|+.++|+++++++|+|.++        +|+.+..+.++...|+++
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~~~~~Y~~s  159 (258)
T d1ae1a_          80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSAS  159 (258)
T ss_dssp             HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             HhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccccchhHHHH
Confidence            99 6899999999985  567899999999999999999999999999999886        777888888999999999


Q ss_pred             CccccCCCC-------ccccccCccCCCCcccCCHHHHH--H---HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALAT--K---LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+|++ +++       +.+.++++.+.|++..++.....  .   ..+..+++.+. +++|+++|+|||++++|
T Consensus       160 K~al~-~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plgR~~~pediA~~v~f  232 (258)
T d1ae1a_         160 KGAIN-QMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAF  232 (258)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999 877       45667888888887766532111  0   11222333332 38999999999999886

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-38  Score=281.95  Aligned_cols=209  Identities=19%  Similarity=0.183  Sum_probs=174.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC---CCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK---PSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      ..|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++....   .+.++.++.||++|++++++++++
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence            45999999999999999999999999999999999999999999999887643   256899999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhc
Q psy4246         196 YQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~a  266 (328)
                      +.+++|+||+||||||+.  .++.+++.++|++++++|+.|+|+++|+++|+|.++       .|..+..+.++...|++
T Consensus        88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~~~~~~~~Y~a  167 (297)
T d1yxma1          88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGA  167 (297)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTCCTTCHHHHH
T ss_pred             HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccccccccccchh
Confidence            999999999999999984  667899999999999999999999999999999887       22234455678899999


Q ss_pred             cCccccCCCC-------ccccccCccCCCCcccCCHHHHH---HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALAT---KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|+|+. +++       +.+.+++|.+.|+...++.....   ...+..+...+ .+++|+++|+|||++|+|
T Consensus       168 sKaal~-~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~plgR~g~pedvA~~v~f  239 (297)
T d1yxma1         168 ARAGVY-NLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCF  239 (297)
T ss_dssp             HHHHHH-HHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999999 877       55678888888888777643211   00111112222 248999999999999987

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=100.00  E-value=1.8e-37  Score=275.55  Aligned_cols=205  Identities=20%  Similarity=0.253  Sum_probs=166.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++..   ...+.++.||++|+++++++++++.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999988888854   346788999999999999999999999


Q ss_pred             cCCccEEEEccccCC----CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceeccccc-chhhhc
Q psy4246         200 FRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAA-TSIYCA  266 (328)
Q Consensus       200 ~g~id~lvnnAg~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~-~~~y~a  266 (328)
                      ||+||+||||||+..    .+.+++.++|+++|++|+.|+|+++|+++|+|.++        +|+.+..+..+ ...|++
T Consensus        80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~~~~~Y~a  159 (268)
T d2bgka1          80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTA  159 (268)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHHH
T ss_pred             cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccccccccccch
Confidence            999999999999852    25688999999999999999999999999999876        45555555554 458999


Q ss_pred             cCccccCCCC-------ccccccCccCCCCcccCCHHHH--HHHHHHHHHHHH---HHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALA--TKLWKLSEEMIQ---SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~r~g~p~dia~~v~F  328 (328)
                      +|+|+. +++       +.+.++++.+.|+...++....  ....+..++...   .+++|+++|||||++++|
T Consensus       160 sKaal~-~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~pedvA~~v~f  232 (268)
T d2bgka1         160 TKHAVL-GLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAY  232 (268)
T ss_dssp             HHHHHH-HHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHHHHHHHHHH
T ss_pred             hHHHHH-hCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccccCCCCcCHHHHHHHHHH
Confidence            999999 877       4566788888887766542110  000111111111   137899999999999887

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-37  Score=271.27  Aligned_cols=199  Identities=19%  Similarity=0.212  Sum_probs=168.8

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ..||++|||||++|||+++|+.|+++|++|++++|+.++++++..++.+..++.++.++.||++|+++++++++++.+++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            36999999999999999999999999999999999999999999998877667799999999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----------cccceecccccchhhhccCc
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----------AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----------ss~~~~~~~~~~~~y~ask~  269 (328)
                      |+||+||||||+..      .++|++++++|+.++|+++++++|+|.++           ||+.+..+.++..+|+++|+
T Consensus        81 G~iDilVnnAg~~~------~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKa  154 (254)
T d2gdza1          81 GRLDILVNNAGVNN------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKH  154 (254)
T ss_dssp             SCCCEEEECCCCCC------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCcCeecccccccc------cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCCccchHHHHH
Confidence            99999999999863      35699999999999999999999999765           66677888899999999999


Q ss_pred             cccCCCCc---------cccccCccCCCCcccCCHHHHHHHH---------HHHHHHHHH-HHhcccccccccccccC
Q psy4246         270 DLSLPVSG---------SYFNNCCRCPPSKAAQDEALATKLW---------KLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       270 al~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+. +++.         .+.++++.+.|+...++.  .+.++         +..+.+.+. +++|+++|+|||++|+|
T Consensus       155 al~-~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~f  229 (254)
T d2gdza1         155 GIV-GFTRSAALAANLMNSGVRLNAICPGFVNTAI--LESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLIT  229 (254)
T ss_dssp             HHH-HHHHHHHHHHHHHTCCEEEEEEEESCBSSHH--HHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHhcCCCEEEEEEEcCCCCChh--hhhccccccccccHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999 7763         345677888888776543  22111         112223222 48999999999999886

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-37  Score=269.34  Aligned_cols=197  Identities=18%  Similarity=0.263  Sum_probs=162.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++      ..+..+.||++|++++++++    +
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~----~   70 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKAL----G   70 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHH----T
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHH----H
Confidence            4799999999999999999999999999999999999998877766554      24678899999999887665    4


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhhcc
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYCAT  267 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~as  267 (328)
                      ++|+||+||||||+.  .++.+++.++|+++|++|+.|+++++|.++|+|.++         +|+.+..+.++...|+++
T Consensus        71 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~as  150 (242)
T d1cyda_          71 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSST  150 (242)
T ss_dssp             TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred             HcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCccccccch
Confidence            679999999999985  567899999999999999999999999999986543         556677788889999999


Q ss_pred             CccccCCCC-------ccccccCccCCCCcccCCHHHHHHHH---HHHHHHHHH-HHhcccccccccccccC
Q psy4246         268 SLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLW---KLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       268 k~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+|+. +++       +.+.++++.+.|+...++.  .+.+.   +..+++.+. +++|+++|||||++|+|
T Consensus       151 Kaal~-~lt~~lA~e~~~~gIrvN~I~PG~i~T~~--~~~~~~~~~~~~~~~~~~pl~R~~~peeva~~v~f  219 (242)
T d1cyda_         151 KGAMT-MLTKAMAMELGPHKIRVNSVNPTVVLTDM--GKKVSADPEFARKLKERHPLRKFAEVEDVVNSILF  219 (242)
T ss_dssp             HHHHH-HHHHHHHHHHGGGTEEEEEEEECCBTTHH--HHHHTCCHHHHHHHHHHSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhCccCeecccCCCCCccCHH--HHhhcCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99999 877       4566788888888776543  32222   222333333 49999999999999887

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-37  Score=269.02  Aligned_cols=201  Identities=20%  Similarity=0.251  Sum_probs=163.2

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      |.+.|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++      ..+..+.+|++|++++++++   
T Consensus         1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~---   71 (244)
T d1pr9a_           1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERAL---   71 (244)
T ss_dssp             CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHH---
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHH---
Confidence            345789999999999999999999999999999999999998887766654      24678899999999987766   


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchhhh
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSIYC  265 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~y~  265 (328)
                       +++|+||+||||||+.  .++.+++.++|+++|++|+.++|+++++++|+|.++         +|+.+..+.++...|+
T Consensus        72 -~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~  150 (244)
T d1pr9a_          72 -GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYC  150 (244)
T ss_dssp             -TTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHH
T ss_pred             -HHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccchhhhh
Confidence             4679999999999985  567899999999999999999999999999976543         6667788888999999


Q ss_pred             ccCccccCCCC-------ccccccCccCCCCcccCCHHHHHH-HHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATK-LWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      ++|+|+. +++       +.+.++++.+.|+...++...... -.+..+...+. +++|+++|+|||++|+|
T Consensus       151 asKaal~-~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peevA~~v~f  221 (244)
T d1pr9a_         151 STKGALD-MLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILF  221 (244)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             hhHHHHH-HHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999999 877       456678888888877665422110 01122222222 48999999999999886

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=100.00  E-value=2.8e-37  Score=269.74  Aligned_cols=193  Identities=20%  Similarity=0.232  Sum_probs=168.4

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCe-------EEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCR-------VILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~-------Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ++||||||++|||+++|++|+++|++       |++++|+.+.++++..++...  +.++.++.||++|+++++++++++
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHH
Confidence            57999999999999999999999998       899999999999999888765  678999999999999999999999


Q ss_pred             HHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhc
Q psy4246         197 QKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~a  266 (328)
                      .++||+||+||||||+.  .++.+++.++|+++|++|+.|+|+++|+++|+|+++        +|+.+..+.++.+.|++
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~a  159 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCM  159 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHH
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCCCChHHHH
Confidence            99999999999999985  667899999999999999999999999999999875        67788888899999999


Q ss_pred             cCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         267 TSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       267 sk~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +|+|+. +++       +.+.++++.+.|+...++..  +.       ..+....|+++|||||.+++|
T Consensus       160 sK~al~-~lt~~la~el~~~gIrvn~i~PG~v~T~~~--~~-------~~~~~~~~~~~PedvA~~v~~  218 (240)
T d2bd0a1         160 SKFGQR-GLVETMRLYARKCNVRITDVQPGAVYTPMW--GK-------VDDEMQALMMMPEDIAAPVVQ  218 (240)
T ss_dssp             HHHHHH-HHHHHHHHHHTTTTEEEEEEEECCBCSTTT--CC-------CCSTTGGGSBCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhCcCCeEEEEeeeCcccCchh--hh-------cCHhhHhcCCCHHHHHHHHHH
Confidence            999999 877       44667788888887766531  11       111124689999999998876

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=100.00  E-value=3.8e-37  Score=269.14  Aligned_cols=201  Identities=20%  Similarity=0.208  Sum_probs=164.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++     +.++.+++||++++++++++++++.++
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999998877665544     568999999999999999999999999


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcccc-----ceecccccchhhhccCcccc
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL-----FARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~-----~~~~~~~~~~~y~ask~al~  272 (328)
                      +|+||+||||||..  .++.+++.++|++++++|+.++++++|+++|+|.++.++     .+....++...|+++|+|++
T Consensus        77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~~~~Y~~sK~al~  156 (241)
T d2a4ka1          77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGLAHYAAGKLGVV  156 (241)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHHHHHHHHCSSHHH
T ss_pred             hCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccCccccchhhHHHH
Confidence            99999999999984  667899999999999999999999999999999887333     34455578899999999999


Q ss_pred             CCCC-------ccccccCccCCCCcccCCHHHHHHHH-HHHHHHHH-HHHhcccccccccccccC
Q psy4246         273 LPVS-------GSYFNNCCRCPPSKAAQDEALATKLW-KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       273 ~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                       +++       +.+..+++.+.|+...++..  +.+. +..++..+ .+++|+++|+|||++++|
T Consensus       157 -~lt~~lA~el~~~gIrvN~I~PG~v~T~~~--~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~f  218 (241)
T d2a4ka1         157 -GLARTLALELARKGVRVNVLLPGLIQTPMT--AGLPPWAWEQEVGASPLGRAGRPEEVAQAALF  218 (241)
T ss_dssp             -HHHHHHHHHHTTTTCEEEEEEECSBCCGGG--TTSCHHHHHHHHHTSTTCSCBCHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhHhCCEEeeeccCcCCCHHH--HhhhHhHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence             877       45667888888887765432  1111 11222222 349999999999999886

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.2e-36  Score=266.79  Aligned_cols=208  Identities=14%  Similarity=0.148  Sum_probs=165.4

Q ss_pred             cCCCCCCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      +..+|+||++|||||+|  |||+++|++|+++|++|++++|+++..++. +++...  +.+..++++|++|+++++++++
T Consensus         2 ~~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~-~~~~~~--~~~~~~~~~D~~~~~~v~~~~~   78 (256)
T d1ulua_           2 LTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEA-EKLAEA--LGGALLFRADVTQDEELDALFA   78 (256)
T ss_dssp             EEECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHHHH--TTCCEEEECCTTCHHHHHHHHH
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHH-HHhhhc--cCcccccccccCCHHHHHHHHH
Confidence            44689999999999986  999999999999999999999987654443 444444  3467789999999999999999


Q ss_pred             HHHHhcCCccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccch
Q psy4246         195 EYQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATS  262 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~  262 (328)
                      ++.+++|+||+||||||+.      .++.+.+.++|+.++++|+.++++++++++|+|++.      +|+.+..+.++..
T Consensus        79 ~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~~~~~  158 (256)
T d1ulua_          79 GVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYN  158 (256)
T ss_dssp             HHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTTCH
T ss_pred             HHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCCCCch
Confidence            9999999999999999974      345688899999999999999999999999999887      4556677788899


Q ss_pred             hhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHHHH-HHHHHHHHHH-HHhcccccccccccccC
Q psy4246         263 IYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKL-WKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       263 ~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      .|+++|+|+. +++       +.+.+++|.+.|++..++....... .+..++..+. +++|+++|+|||++++|
T Consensus       159 ~Y~asKaal~-~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~f  232 (256)
T d1ulua_         159 VMAIAKAALE-ASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLF  232 (256)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999999999 877       5567788888888776654322111 1222233333 49999999999999887

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=100.00  E-value=5.6e-36  Score=264.63  Aligned_cols=207  Identities=18%  Similarity=0.223  Sum_probs=168.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee-CChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      ++|+||+||||||++|||+++|+.|+++|++|++++ |+.+.++++.+++.+.  +.+++++.||++|+++++++++++.
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~   79 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAV   79 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc--CCCceEecCCCCCHHHHHHHHHHHH
Confidence            469999999999999999999999999999999875 4555567777777665  6689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcccc------ce-ecccccchhhhccC
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL------FA-RQQGAATSIYCATS  268 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~------~~-~~~~~~~~~y~ask  268 (328)
                      +++|+||+||||||+.  .++.+.+.++|+++|++|+.++|+++|+++|+|++++++      .+ ..+.++...|+++|
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~~~~~~Y~asK  159 (259)
T d1ja9a_          80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPNHALYAGSK  159 (259)
T ss_dssp             HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCCSCHHHHHHH
T ss_pred             HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCCCCchhHHHHH
Confidence            9999999999999985  556789999999999999999999999999999887322      23 44567899999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHHHHH------------HHHHHHHHHH-HHhcccccccccccccC
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKL------------WKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +|+. +++       +.+.++++.+.|++..++.......            .+..+.+... +++|+++|+|||++++|
T Consensus       160 ~al~-~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eVa~~v~f  238 (259)
T d1ja9a_         160 AAVE-GFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSA  238 (259)
T ss_dssp             HHHH-HHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence            9999 777       4566788888888876654322110            1112222222 38999999999999886

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-35  Score=258.37  Aligned_cols=208  Identities=16%  Similarity=0.146  Sum_probs=172.3

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHH---CCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLAL---HGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~---~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      .|+||++|||||++|||+++|++|++   +|++|++++|+.++++++.++|....++.++.++.||++++++++++++.+
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~   82 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            58999999999999999999999996   799999999999999999999988877889999999999999999999998


Q ss_pred             HHh----cCCccEEEEccccCC-----CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----------cccceecc
Q psy4246         197 QKK----FRSLNILVLNAGVFG-----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----------AKLFARQQ  257 (328)
Q Consensus       197 ~~~----~g~id~lvnnAg~~~-----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------ss~~~~~~  257 (328)
                      .+.    ++.+|+||||||+.+     ++.+.+.++|+++|++|+.|+++++|+++|+|+++          +|+.+..+
T Consensus        83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~  162 (259)
T d1oaaa_          83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP  162 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC
T ss_pred             HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccCC
Confidence            763    468999999999742     35688999999999999999999999999999864          66677888


Q ss_pred             cccchhhhccCccccCCCCcc-----ccccCccCCCCcccCCHHHHHHH----HHHHHHHHHH-HHhccccccccccccc
Q psy4246         258 GAATSIYCATSLDLSLPVSGS-----YFNNCCRCPPSKAAQDEALATKL----WKLSEEMIQS-VVSTWLEETTERGEVV  327 (328)
Q Consensus       258 ~~~~~~y~ask~al~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~r~g~p~dia~~v~  327 (328)
                      .++...|+++|+++. +++..     +..+++.+.|++..++.......    .+..+.+... +++|+++|+|+|..++
T Consensus       163 ~~~~~~Y~asKaal~-~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~evA~~i~  241 (259)
T d1oaaa_         163 YKGWGLYCAGKAARD-MLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLL  241 (259)
T ss_dssp             CTTCHHHHHHHHHHH-HHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHH
T ss_pred             CccchHHHHHHHHHH-HHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence            889999999999999 77743     34567777788777664322111    1122222222 3899999999999876


Q ss_pred             C
Q psy4246         328 F  328 (328)
Q Consensus       328 F  328 (328)
                      |
T Consensus       242 ~  242 (259)
T d1oaaa_         242 G  242 (259)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=259.95  Aligned_cols=173  Identities=21%  Similarity=0.234  Sum_probs=153.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...  +.++.++.||++|+++++++++++.+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~   80 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKA   80 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999998765  67899999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                      ++|++|+||||||+.  ..+.+.+.+.|+++|++|+.|+++++++++|+|+++        +|+.+..+.++.+.|++||
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asK  160 (244)
T d1yb1a_          81 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSK  160 (244)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHHH
T ss_pred             HcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCCcHHHHHHH
Confidence            999999999999985  556788999999999999999999999999999887        7778888899999999999


Q ss_pred             ccccCCCCccc----------cccCccCCCCcccCC
Q psy4246         269 LDLSLPVSGSY----------FNNCCRCPPSKAAQD  294 (328)
Q Consensus       269 ~al~~~~~g~~----------~~~~~~~~~~~~~~~  294 (328)
                      +|+. +++..+          ..+++.+.|++..++
T Consensus       161 aal~-~~~~~La~El~~~~~~gI~V~~i~PG~v~T~  195 (244)
T d1yb1a_         161 FAAV-GFHKTLTDELAALQITGVKTTCLCPNFVNTG  195 (244)
T ss_dssp             HHHH-HHHHHHHHHHHHTTCTTEEEEEEEETHHHHC
T ss_pred             HHHH-HHHHHHHHHHHhhcCCCEEEEEEEcCCCCCh
Confidence            9999 777432          245566667655443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=100.00  E-value=5.6e-35  Score=260.02  Aligned_cols=205  Identities=21%  Similarity=0.303  Sum_probs=168.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .+|+||++|||||++|||+++|+.|+++|++|++++|+ .+.++++.+++...  +.++.++.+|++|+++++++++++.
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~   91 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEEAV   91 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh--CCceeeEeCCCCCHHHHHHHHHHHH
Confidence            46999999999999999999999999999999999876 45667777777665  6689999999999999999999999


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccc------cce-ecccccchhhhccC
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK------LFA-RQQGAATSIYCATS  268 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss------~~~-~~~~~~~~~y~ask  268 (328)
                      +.+|+||++|||||..  .++.+.+.++|++++++|+.++++++++++|+|.++++      +.+ ..+.+....|+++|
T Consensus        92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~~~~~~~Y~asK  171 (272)
T d1g0oa_          92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSK  171 (272)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCSSCHHHHHHH
T ss_pred             HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccccccchhhHHHHH
Confidence            9999999999999985  56678999999999999999999999999999998733      332 33456678899999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHH-------------HHH-HHH-HHHHhcccccccccccc
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWK-------------LSE-EMI-QSVVSTWLEETTERGEV  326 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~-~~~~~r~g~p~dia~~v  326 (328)
                      +|+. +++       +.+.+++|.+.|+...++...  .++.             ..+ ... ..+++|+++|+|||++|
T Consensus       172 aal~-~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v  248 (272)
T d1g0oa_         172 GAIE-TFARCMAIDMADKKITVNVVAPGGIKTDMYH--AVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVV  248 (272)
T ss_dssp             HHHH-HHHHHHHHHHGGGTCEEEEEEECCBSSHHHH--HHGGGGSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhchhCeEEEEEccCCcCChHHH--HHHHhhhhcccccchHHHHHHHHHccCCCCCCcCHHHHHHHH
Confidence            9999 777       456778888888877665321  1111             001 111 12389999999999999


Q ss_pred             cC
Q psy4246         327 VF  328 (328)
Q Consensus       327 ~F  328 (328)
                      +|
T Consensus       249 ~f  250 (272)
T d1g0oa_         249 CF  250 (272)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=9.2e-36  Score=262.13  Aligned_cols=195  Identities=13%  Similarity=0.066  Sum_probs=160.7

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      ++|||||++|||+++|++|+++|++|++++|+.+.++++.... ..       +..+|+++.++++++++++.++||+||
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~-~~-------~~~~dv~~~~~~~~~~~~~~~~~G~iD   73 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFA-ET-------YPQLKPMSEQEPAELIEAVTSAYGQVD   73 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHH-HH-------CTTSEECCCCSHHHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhh-Cc-------EEEeccCCHHHHHHHHHHHHHHcCCCC
Confidence            7999999999999999999999999999999988877654332 22       246899999999999999999999999


Q ss_pred             EEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCccccC
Q psy4246         205 ILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLDLSL  273 (328)
Q Consensus       205 ~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~al~~  273 (328)
                      +||||||+.   .++.+++.++|++++++|+.++|+++|+++|+|+++        +|+.+..+.++...|+++|+|+. 
T Consensus        74 iLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~~~~~Y~asKaal~-  152 (252)
T d1zmta1          74 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGAC-  152 (252)
T ss_dssp             EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHH-
T ss_pred             EEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccccccccccccccHH-
Confidence            999999974   456789999999999999999999999999999886        66677778888999999999999 


Q ss_pred             CCC-------ccccccCccCCCCcccCCH-------HHHHHHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         274 PVS-------GSYFNNCCRCPPSKAAQDE-------ALATKLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       274 ~~~-------g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      +++       +.+.+++|.+.|+...++.       .......+..+.+.+. +++|+++|||||++|+|
T Consensus       153 ~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~R~g~pedvA~~v~f  222 (252)
T d1zmta1         153 TLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAF  222 (252)
T ss_dssp             HHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            887       5567888888888776542       1111112223333333 38999999999999887

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-35  Score=268.00  Aligned_cols=194  Identities=16%  Similarity=0.172  Sum_probs=163.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC---------hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS---------LDKANDAISKILTEKPSAQCIAMELNLCRLKSV  189 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~---------~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v  189 (328)
                      ++|+||++|||||++|||+++|+.|+++|++|++++|+         .+.+++..+++...     ...+.+|++|.+++
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~~   77 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR-----GGKAVANYDSVEAG   77 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT-----TCEEEEECCCGGGH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhc-----ccccccccchHHHH
Confidence            57999999999999999999999999999999998764         34566666666543     34567899999999


Q ss_pred             HHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccc
Q psy4246         190 KKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGA  259 (328)
Q Consensus       190 ~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~  259 (328)
                      +++++++.++||+||+||||||+.  +++.+++.++|++++++|+.|+|+++|+++|+|+++        +|+.+..+.+
T Consensus        78 ~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~  157 (302)
T d1gz6a_          78 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF  157 (302)
T ss_dssp             HHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT
T ss_pred             HHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCC
Confidence            999999999999999999999985  667899999999999999999999999999999876        6777788889


Q ss_pred             cchhhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         260 ATSIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       260 ~~~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +...|+++|+|+. +++       +.+.++++.+.|+...+....          .....+.|+++|||||++|+|
T Consensus       158 ~~~~Y~asKaal~-~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~----------~~~~~~~~~~~PedvA~~v~f  222 (302)
T d1gz6a_         158 GQANYSAAKLGLL-GLANTLVIEGRKNNIHCNTIAPNAGSRMTET----------VMPEDLVEALKPEYVAPLVLW  222 (302)
T ss_dssp             TCHHHHHHHHHHH-HHHHHHHHHTGGGTEEEEEEEEECCSTTTGG----------GSCHHHHHHSCGGGTHHHHHH
T ss_pred             CcHHHHHHHHHHH-HHHHHHHHHHhccCCceeeeCCCCCCcchhh----------cCcHhhHhcCCHHHHHHHHHH
Confidence            9999999999999 877       456677888877765443211          111235778999999999886

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6e-35  Score=254.12  Aligned_cols=190  Identities=15%  Similarity=0.127  Sum_probs=153.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |+||++|||||++|||+++|+.|+++|++|++++|+++.+++.           ...++.||+++.      ++.+.+++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~-----------~~~~~~~Dv~~~------~~~~~~~~   64 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-----------GHRYVVCDLRKD------LDLLFEKV   64 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-----------CSEEEECCTTTC------HHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc-----------CCcEEEcchHHH------HHHHHHHh
Confidence            6899999999999999999999999999999999997654331           234678999863      45566788


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccCcc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask~a  270 (328)
                      |+||+||||||+.  .++.+++.++|++++++|+.++++++|+++|+|+++        +|+.+..+.+....|+++|+|
T Consensus        65 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~~~~~Y~asKaa  144 (234)
T d1o5ia_          65 KEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMA  144 (234)
T ss_dssp             CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHH
T ss_pred             CCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccccccccchhHHHH
Confidence            9999999999984  566789999999999999999999999999999876        555667788889999999999


Q ss_pred             ccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         271 LSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +. +++       +.+.+++|.+.|++..++......-.+..+.+.+ .+++|+++|||||++|+|
T Consensus       145 l~-~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~f  209 (234)
T d1o5ia_         145 LT-GFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRMAKPEEIASVVAF  209 (234)
T ss_dssp             HH-HHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhcccCeEEeecccCccchhhhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            99 877       4567788888888887764322111112222222 249999999999999987

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=258.24  Aligned_cols=212  Identities=17%  Similarity=0.203  Sum_probs=174.2

Q ss_pred             hccCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHH
Q psy4246         115 ILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       115 ~~~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      .++.++|+||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... +.++.++.||+++.++++++++
T Consensus        17 ~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~   95 (294)
T d1w6ua_          17 MLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVS   95 (294)
T ss_dssp             CSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhh
Confidence            344568999999999999999999999999999999999999999999888887764 6788999999999999999999


Q ss_pred             HHHHhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------cccceecccccchh
Q psy4246         195 EYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------AKLFARQQGAATSI  263 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------ss~~~~~~~~~~~~  263 (328)
                      .+.+++++||+||||||..  .++...+.++|..++.+|+.+.+++.+.+.+.+...         ++..+..+.++...
T Consensus        96 ~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~~~~  175 (294)
T d1w6ua_          96 ELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVP  175 (294)
T ss_dssp             HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHH
T ss_pred             hhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcccccch
Confidence            9999999999999999985  456788999999999999999999999988877654         44456667788899


Q ss_pred             hhccCccccCCCC-------ccccccCccCCCCcccCCHHHHH--HHHHHHHHHHHH-HHhcccccccccccccC
Q psy4246         264 YCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALAT--KLWKLSEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       264 y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      |+++|+|+. +++       +.+.+++|.+.|+...++.....  ...+..++..+. +++|+++|+|||++|+|
T Consensus       176 YsasKaal~-~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~f  249 (294)
T d1w6ua_         176 SASAKAGVE-AMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAF  249 (294)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Confidence            999999999 877       45667888888888776543221  111122233222 48999999999999886

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.98  E-value=2.6e-34  Score=252.85  Aligned_cols=201  Identities=14%  Similarity=0.208  Sum_probs=160.2

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC-CHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC-RLKSVKKFAEEYQ  197 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-~~~~v~~~~~~~~  197 (328)
                      ++|+||+||||||++|||+++|++|+++|++|++++|+.++.+. ..++....++.++.++.+|++ +.++++++++++.
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTA-LAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHH-HHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHH-HHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999888776544 355556666789999999998 6778999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-----------cccceecccccchhhhc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----------AKLFARQQGAATSIYCA  266 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----------ss~~~~~~~~~~~~y~a  266 (328)
                      +++|+||+||||||..      +++.|++++++|+.|+|+++++++|+|.++           +|+.+..+.++...|++
T Consensus        80 ~~~g~iDilvnnAG~~------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~a  153 (254)
T d1sbya1          80 DQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSA  153 (254)
T ss_dssp             HHHSCCCEEEECCCCC------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHH
T ss_pred             HHcCCCCEEEeCCCCC------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCCCHHHHH
Confidence            9999999999999964      568899999999999999999999999764           66677888899999999


Q ss_pred             cCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHH-HHHHHHHHHHH-hccccccccccccc
Q psy4246         267 TSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLW-KLSEEMIQSVV-STWLEETTERGEVV  327 (328)
Q Consensus       267 sk~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~r~g~p~dia~~v~  327 (328)
                      +|+|+. +++       +.+.++++.+.|++..++.......+ +..+...+.++ ++..+||++|..++
T Consensus       154 sKaal~-~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~va~~~~  222 (254)
T d1sbya1         154 SKAAVV-SFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFV  222 (254)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhccccCCCCCHHHHHHHHH
Confidence            999999 877       34567788888887776532110011 11122233343 45667788876554

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.1e-33  Score=251.21  Aligned_cols=203  Identities=15%  Similarity=0.126  Sum_probs=157.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEE---eeCChhHHHHHHHHHHhh-CCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVIL---ACRSLDKANDAISKILTE-KPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~---~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .|+||||||++|||+++|+.|+++|++|++   ++|+.+..+++.+..... ..+.++.++.||++|.++++++++++. 
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~-   80 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT-   80 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT-
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcc-
Confidence            589999999999999999999999997554   456554444333332221 236789999999999999999998874 


Q ss_pred             hcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------cccceecccccchhhhccC
Q psy4246         199 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFARQQGAATSIYCATS  268 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~~~~~~~~~y~ask  268 (328)
                       .|++|+||||||+.  +++.+.+.++|++++++|+.|+++++++++|+|+++        ||+.+..+.++...|+++|
T Consensus        81 -~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~~~~~Y~asK  159 (285)
T d1jtva_          81 -EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASK  159 (285)
T ss_dssp             -TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHHHH
T ss_pred             -ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCCCchHHHHHH
Confidence             38999999999985  566789999999999999999999999999999876        7778888999999999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHH-----------------HHHHHHHHHHHHHHHHhcccccccccc
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEAL-----------------ATKLWKLSEEMIQSVVSTWLEETTERG  324 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~r~g~p~dia~  324 (328)
                      +|+. +++       +.+.++++.+.|++..++...                 .+++.+........+.+|.++|||||+
T Consensus       160 aal~-~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PeeVA~  238 (285)
T d1jtva_         160 FALE-GLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAE  238 (285)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHHhhhhcccCCCHHHHHH
Confidence            9999 777       456677888888877664211                 111222222223334789999999999


Q ss_pred             cccC
Q psy4246         325 EVVF  328 (328)
Q Consensus       325 ~v~F  328 (328)
                      +|+|
T Consensus       239 ~v~~  242 (285)
T d1jtva_         239 VFLT  242 (285)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.7e-33  Score=243.63  Aligned_cols=202  Identities=18%  Similarity=0.214  Sum_probs=167.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ++|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++     +.+.....+|+.+.+.++..+..+..
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAKG   75 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCCccccccccccccccccccccccc
Confidence            3799999999999999999999999999999999999999988888777     55788899999999999999999999


Q ss_pred             hcCCccEEEEccccC--------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cccceec
Q psy4246         199 KFRSLNILVLNAGVF--------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------------AKLFARQ  256 (328)
Q Consensus       199 ~~g~id~lvnnAg~~--------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss~~~~~  256 (328)
                      .++.+|++++|+++.        .+..+.+.++|++++++|+.++|+++++++|+|...              +|+.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~  155 (248)
T d2o23a1          76 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE  155 (248)
T ss_dssp             HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred             ccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc
Confidence            999999999999863        234567889999999999999999999999998653              6667778


Q ss_pred             ccccchhhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHH-HHHHHHHH-H-hcccccccccccc
Q psy4246         257 QGAATSIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKL-SEEMIQSV-V-STWLEETTERGEV  326 (328)
Q Consensus       257 ~~~~~~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~r~g~p~dia~~v  326 (328)
                      +.++...|+++|+|+. +++       +.+.++++.+.|+...++..  +.+++. .+...+.. + +|+++|||||+++
T Consensus       156 ~~~~~~~Y~asKaal~-~lt~~la~e~~~~gIrvN~I~PG~i~T~~~--~~~~~~~~~~~~~~~pl~~R~g~peevA~~v  232 (248)
T d2o23a1         156 GQVGQAAYSASKGGIV-GMTLPIARDLAPIGIRVMTIAPGLFGTPLL--TSLPEKVCNFLASQVPFPSRLGDPAEYAHLV  232 (248)
T ss_dssp             CCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTCSSSCSCBCHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHH-HHHHHHHHHhcccCcceeeeccCceecchh--hcCCHHHHHHHHhcCCCCCCCcCHHHHHHHH
Confidence            8889999999999999 877       55677888888888776642  223322 22232222 4 9999999999998


Q ss_pred             cC
Q psy4246         327 VF  328 (328)
Q Consensus       327 ~F  328 (328)
                      +|
T Consensus       233 ~f  234 (248)
T d2o23a1         233 QA  234 (248)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-32  Score=239.27  Aligned_cols=197  Identities=14%  Similarity=0.182  Sum_probs=153.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .|+||++|||||++|||+++|+.|+++|++|++++|++++++++.    +   ...+....+|+.+.+.++    .+.+.
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~----~---~~~~~~~~~d~~~~~~~~----~~~~~   71 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE----K---YPGIQTRVLDVTKKKQID----QFANE   71 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG----G---STTEEEEECCTTCHHHHH----HHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----h---ccCCceeeeecccccccc----ccccc
Confidence            499999999999999999999999999999999999987765432    2   235677888988766544    45556


Q ss_pred             cCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------ccccee-cccccchhhhccC
Q psy4246         200 FRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------AKLFAR-QQGAATSIYCATS  268 (328)
Q Consensus       200 ~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------ss~~~~-~~~~~~~~y~ask  268 (328)
                      ++++|+||||||+.  .++.+++.++|++.+++|+.++++++|+++|+|.++        +|+.+. .+.+...+|+++|
T Consensus        72 ~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~~Y~~sK  151 (245)
T d2ag5a1          72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTK  151 (245)
T ss_dssp             CSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHH
T ss_pred             cccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCCccchhHHHHHH
Confidence            79999999999985  457889999999999999999999999999999876        444443 4567889999999


Q ss_pred             ccccCCCC-------ccccccCccCCCCcccCCHHHHHHHH-----HHHHHHHH-HHHhcccccccccccccC
Q psy4246         269 LDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLW-----KLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       269 ~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +|++ +++       +.+.++++.+.|++..++........     +..+...+ .+++|+++|+|||++|+|
T Consensus       152 aal~-~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedva~~v~f  223 (245)
T d2ag5a1         152 AAVI-GLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVY  223 (245)
T ss_dssp             HHHH-HHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999 777       45667888888887766433221110     11122222 238999999999999876

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-31  Score=238.11  Aligned_cols=127  Identities=23%  Similarity=0.318  Sum_probs=115.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +++|||||++|||+++|++|+++ |++|++++|+.++++++.++|...  +.++.++.||++|.++++++++++.+++|+
T Consensus         4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            46699999999999999999986 899999999999999999999877  567899999999999999999999999999


Q ss_pred             ccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Q psy4246         203 LNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL  252 (328)
Q Consensus       203 id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss~  252 (328)
                      ||+||||||+.  .+..+.+.++|+.+|++|++|+++++++++|+|++++++
T Consensus        82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~i  133 (275)
T d1wmaa1          82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRV  133 (275)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEE
T ss_pred             cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999986  445677788999999999999999999999999876433

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.96  E-value=6.6e-31  Score=234.57  Aligned_cols=200  Identities=18%  Similarity=0.224  Sum_probs=149.1

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC-hhHHHHHHHHHHhhCCCCeEEE-----------------EEcccCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIA-----------------MELNLCR  185 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~-----------------~~~Dls~  185 (328)
                      .++|||||++|||+++|++|+++|++|++++++ .+.++++.+++....+ ..+..                 +.+|+++
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcC-CceEEEEeecccccccccccccccccCCC
Confidence            379999999999999999999999999998764 5566677777766543 34444                 4566999


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccC--CCCCCCChhHH--------------HHHHhhhhHHHHHHHHHHHHHHHhc
Q psy4246         186 LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGF--------------ETTFQVNHLAHFYLTLQLENALIKG  249 (328)
Q Consensus       186 ~~~v~~~~~~~~~~~g~id~lvnnAg~~--~~~~~~~~~~~--------------~~~~~vN~~g~~~l~~~~~~~~~~~  249 (328)
                      .++++++++++.+++|+||+||||||+.  .++.+.+.++|              ..+|.+|+.+++++++.+.+.+...
T Consensus        82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  161 (284)
T d1e7wa_          82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT  161 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence            9999999999999999999999999985  44555555544              4579999999999999999886532


Q ss_pred             --------------cccceecccccchhhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHH
Q psy4246         250 --------------AKLFARQQGAATSIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEM  308 (328)
Q Consensus       250 --------------ss~~~~~~~~~~~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (328)
                                    ++..+..+.++...|+++|+|+. +++       +.+.+++|.+.|+...+...+.+..++   +.
T Consensus       162 ~~~~~~~~~~ii~~~s~~~~~~~~~~~~Y~asKaal~-~lt~~lA~el~~~gIrvN~I~PG~t~~~~~~~~~~~~---~~  237 (284)
T d1e7wa_         162 PAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALE-GLTRSAALELAPLQIRVNGVGPGLSVLVDDMPPAVWE---GH  237 (284)
T ss_dssp             CGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEESSBCCGGGSCHHHHH---HH
T ss_pred             HHHhcCCCCcccccccccccCCccceeeeccccccch-hhhHHHHHHhCCccccccccccccccccccCCHHHHH---HH
Confidence                          22344556677899999999999 877       456778888888865444333332222   22


Q ss_pred             HHH-H-HhcccccccccccccC
Q psy4246         309 IQS-V-VSTWLEETTERGEVVF  328 (328)
Q Consensus       309 ~~~-~-~~r~g~p~dia~~v~F  328 (328)
                      .+. + ++|+++|+|||++++|
T Consensus       238 ~~~~pl~~R~~~peeiA~~v~f  259 (284)
T d1e7wa_         238 RSKVPLYQRDSSAAEVSDVVIF  259 (284)
T ss_dssp             HTTCTTTTSCBCHHHHHHHHHH
T ss_pred             HhcCCCCCCCCCHHHHHHHHHH
Confidence            222 3 4999999999999886

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.9e-30  Score=225.47  Aligned_cols=173  Identities=23%  Similarity=0.241  Sum_probs=153.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.... +..+..+.+|+++.+.+..+++.+.+.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999999988877654 6789999999999999999999999999


Q ss_pred             CCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cccceecccccchhhhccCccc
Q psy4246         201 RSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       201 g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      |.+|++|||||..  .++.+.+.++|++++++|+.|++++++.++|+|++.       +|+.+..+.++...|++||+|+
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~p~~~~Y~asKaal  170 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFAL  170 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCCCCchHHHHHHHHH
Confidence            9999999999985  556788999999999999999999999999999865       6667888889999999999999


Q ss_pred             cCCCCcc---------ccccCccCCCCcccCCH
Q psy4246         272 SLPVSGS---------YFNNCCRCPPSKAAQDE  295 (328)
Q Consensus       272 ~~~~~g~---------~~~~~~~~~~~~~~~~~  295 (328)
                      . +++..         +..+++.+.|++..++.
T Consensus       171 ~-~~~~~La~El~~~~~~I~V~~v~PG~v~T~~  202 (269)
T d1xu9a_         171 D-GFFSSIRKEYSVSRVNVSITLCVLGLIDTET  202 (269)
T ss_dssp             H-HHHHHHHHHHHHHTCCCEEEEEEECCBCCHH
T ss_pred             H-HHHHHHHHHhhhcCCCEEEEEEecCcCCCcH
Confidence            9 77632         23455667777776654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=7.2e-30  Score=223.97  Aligned_cols=169  Identities=21%  Similarity=0.242  Sum_probs=134.8

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |+.|+||||||++|||+++|++|+++|+  +|++++|+.++++++.    +. .+.++.++.||++|.++++++++++.+
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~----~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~   75 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK----SI-KDSRVHVLPLTVTCDKSLDTFVSKVGE   75 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH----TC-CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHH----Hh-hCCceEEEEEecCCHHHHHHHHHHHHH
Confidence            4679999999999999999999999997  6888999988876543    22 256899999999999999999999999


Q ss_pred             hcCC--ccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccc-------------c------ce
Q psy4246         199 KFRS--LNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK-------------L------FA  254 (328)
Q Consensus       199 ~~g~--id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss-------------~------~~  254 (328)
                      .++.  ||+||||||+.   .+..+.+.++|+++|++|+.|++++++.++|+|+++..             +      .+
T Consensus        76 ~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~  155 (250)
T d1yo6a1          76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG  155 (250)
T ss_dssp             HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred             HhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccc
Confidence            8764  99999999985   44678899999999999999999999999999987511             1      00


Q ss_pred             -------ecccccchhhhccCccccCCCC-------ccccccCccCCCCcccCCH
Q psy4246         255 -------RQQGAATSIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDE  295 (328)
Q Consensus       255 -------~~~~~~~~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~  295 (328)
                             ..+..+...|++||+|+. +++       +.+..+++.+.|+...++.
T Consensus       156 ~~~~~~~~~~~~~~~aY~aSKaal~-~l~~~la~el~~~gI~v~~i~PG~v~T~m  209 (250)
T d1yo6a1         156 SITDNTSGSAQFPVLAYRMSKAAIN-MFGRTLAVDLKDDNVLVVNFCPGWVQTNL  209 (250)
T ss_dssp             CSTTCCSTTSSSCBHHHHHHHHHHH-HHHHHHHHHTGGGTCEEEEEECCCC----
T ss_pred             cccCCcccccchhHHHHHHHHHHHH-HHHHHHHHHhcccCeEEEEEecCCCCCCC
Confidence                   112234467999999999 776       3345567777788777664

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2.2e-29  Score=220.55  Aligned_cols=169  Identities=18%  Similarity=0.248  Sum_probs=139.4

Q ss_pred             CceEEEcCCCCCccHHHHHHHH---HCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH-
Q psy4246         123 NYNAIVTGANTGIGFETARSLA---LHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK-  198 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la---~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~-  198 (328)
                      .|+||||||++|||+++|++|+   ++|++|++++|+.++++++. ++...  +.++.++.||++|+++++++++++.+ 
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~-~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DLAKN--HSNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH-HHHHH--CTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HHHhc--CCcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            4799999999999999999996   57999999999998887764 44444  45899999999999999999999854 


Q ss_pred             -hcCCccEEEEccccCC---CCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------------------ccccee
Q psy4246         199 -KFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------------------AKLFAR  255 (328)
Q Consensus       199 -~~g~id~lvnnAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------------------ss~~~~  255 (328)
                       ++++||+||||||+..   +..+.+.++|++++++|+.|+++++++++|+|+++                   +|+.+.
T Consensus        79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~  158 (248)
T d1snya_          79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS  158 (248)
T ss_dssp             HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred             hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence             6799999999999853   35688999999999999999999999999999864                   344433


Q ss_pred             c---ccccchhhhccCccccCCCC-------ccccccCccCCCCcccCCH
Q psy4246         256 Q---QGAATSIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDE  295 (328)
Q Consensus       256 ~---~~~~~~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~  295 (328)
                      .   +.++...|++||+|+. +++       +.+..+++.+.|++..++.
T Consensus       159 ~~~~~~~~~~~Y~aSKaal~-~lt~~la~e~~~~gI~vn~v~PG~v~T~m  207 (248)
T d1snya_         159 IQGNTDGGMYAYRTSKSALN-AATKSLSVDLYPQRIMCVSLHPGWVKTDM  207 (248)
T ss_dssp             STTCCSCCCHHHHHHHHHHH-HHHHHHHHHHGGGTCEEEEECCCSBCSTT
T ss_pred             cCCCCCCChHHHHHHHHHHH-HHHHHHHHHhCCCCeEEEEcCCCcccCCc
Confidence            2   3456778999999999 777       3345677778888777763

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.95  E-value=2.6e-30  Score=232.24  Aligned_cols=211  Identities=15%  Similarity=0.094  Sum_probs=153.1

Q ss_pred             cCCCCCCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCC-------C-----CeEEEEEc-
Q psy4246         117 HGRDLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-------S-----AQCIAMEL-  181 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~-------~-----~~~~~~~~-  181 (328)
                      |.++|+||++|||||+|  |||+++|+.|+++|++|++++|+................       +     .++..+.. 
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV   81 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence            56799999999999876  999999999999999999999976543332222211100       0     01222222 


Q ss_pred             -----------------ccCCHHHHHHHHHHHHHhcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHH
Q psy4246         182 -----------------NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTL  240 (328)
Q Consensus       182 -----------------Dls~~~~v~~~~~~~~~~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~  240 (328)
                                       |.++..+++++++++.++||+||+||||||..    .++.+++.++|++++++|+.+++++++
T Consensus        82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~  161 (297)
T d1d7oa_          82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS  161 (297)
T ss_dssp             CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence                             23566778999999999999999999999973    456789999999999999999999999


Q ss_pred             HHHHHHHhcccc------c-eecccccchhhhccCccccCCCC-------c-cccccCccCCCCcccCCHHHHH-HHHHH
Q psy4246         241 QLENALIKGAKL------F-ARQQGAATSIYCATSLDLSLPVS-------G-SYFNNCCRCPPSKAAQDEALAT-KLWKL  304 (328)
Q Consensus       241 ~~~~~~~~~ss~------~-~~~~~~~~~~y~ask~al~~~~~-------g-~~~~~~~~~~~~~~~~~~~~~~-~~~~~  304 (328)
                      +++|+|.+++++      . .....+....|+++|+++. .++       + .+.+++|.+.|+...++..... ...+.
T Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~y~~aKaa~~-~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~  240 (297)
T d1d7oa_         162 HFLPIMNPGGASISLTYIASERIIPGYGGGMSSAKAALE-SDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTM  240 (297)
T ss_dssp             HHGGGEEEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHH-HHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCSHHHHH
T ss_pred             HHHHHhhcCCcceeeeehhhcccccccccceeccccccc-ccccccchhccccceEEecccccccccchhhhhccCCHHH
Confidence            999998877332      1 1233456778999999998 655       2 3567888888887766532110 01112


Q ss_pred             HHHHHHH-HHhcccccccccccccC
Q psy4246         305 SEEMIQS-VVSTWLEETTERGEVVF  328 (328)
Q Consensus       305 ~~~~~~~-~~~r~g~p~dia~~v~F  328 (328)
                      .+...+. +++|+++|||||++|+|
T Consensus       241 ~~~~~~~~PlgR~~~peevA~~v~f  265 (297)
T d1d7oa_         241 IEYSYNNAPIQKTLTADEVGNAAAF  265 (297)
T ss_dssp             HHHHHHHSSSCCCBCHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            2222222 49999999999999887

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.95  E-value=4.4e-29  Score=227.51  Aligned_cols=171  Identities=11%  Similarity=0.091  Sum_probs=133.5

Q ss_pred             CCceEEEcC--CCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCC----------CCeEEEEE---------
Q psy4246         122 SNYNAIVTG--ANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP----------SAQCIAME---------  180 (328)
Q Consensus       122 ~~k~~lITG--as~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~----------~~~~~~~~---------  180 (328)
                      .+|++||||  +++|||+++|+.|+++|++|++++++................          ........         
T Consensus         1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (329)
T d1uh5a_           1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence            379999999  557999999999999999999999887654443333222111          01122233         


Q ss_pred             -----------cccCCHHHHHHHHHHHHHhcCCccEEEEccccC----CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         181 -----------LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       181 -----------~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                                 +|+++.++++++++.+.+.||+||+||||||..    +++.+++.++|+++|++|++++++++|+++|+
T Consensus        81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~  160 (329)
T d1uh5a_          81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence                       467788899999999999999999999999974    35678899999999999999999999999999


Q ss_pred             HHhcccc------ceeccccc-chhhhccCccccCCCC-------cc-ccccCccCCCCcccC
Q psy4246         246 LIKGAKL------FARQQGAA-TSIYCATSLDLSLPVS-------GS-YFNNCCRCPPSKAAQ  293 (328)
Q Consensus       246 ~~~~ss~------~~~~~~~~-~~~y~ask~al~~~~~-------g~-~~~~~~~~~~~~~~~  293 (328)
                      |++.+++      .+..+.++ ...|+++|++++ +++       +. |.+++|.+.|++..|
T Consensus       161 m~~~GsIv~iss~~~~~~~p~y~~~y~asKaal~-~ltr~lA~Ela~~~gIRVNaI~PG~i~T  222 (329)
T d1uh5a_         161 MKPQSSIISLTYHASQKVVPGYGGGMSSAKAALE-SDTRVLAYHLGRNYNIRINTISAGPLKS  222 (329)
T ss_dssp             EEEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHH-HHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred             cccccccccceeehhcccccccchhhhhhhcccc-ccchhhHHHHhcccCcEEEEEecCcccc
Confidence            9887555      33334444 457899999999 777       33 678888888887766

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=8.4e-29  Score=217.96  Aligned_cols=205  Identities=13%  Similarity=0.119  Sum_probs=162.9

Q ss_pred             CCCCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      -|+||++|||||+|  |||+++|+.|+++|++|++++|+++..+.+ +++...  ..+...+.+|+++..++..+++++.
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   78 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV-EEFAAQ--LGSDIVLQCDVAEDASIDTMFAELG   78 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH-HHHHHH--TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHHHhh--cCCcceeecccchHHHHHHHHHHhh
Confidence            38999999999998  899999999999999999999996654443 444444  3466788999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC-------CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhh
Q psy4246         198 KKFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIY  264 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~-------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y  264 (328)
                      +.++++|++||||+....       ......+.|...+++|+.+.+.+++.+.+.|.+.      ||+.+..+.+....|
T Consensus        79 ~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~~~~~Y  158 (258)
T d1qsga_          79 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVM  158 (258)
T ss_dssp             TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHH
T ss_pred             hcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCCCcHHH
Confidence            999999999999997422       1245667899999999999999999999999776      555666777888999


Q ss_pred             hccCccccCCCC-------ccccccCccCCCCcccCCHHHHH-HHHHHHHHHHH-HHHhcccccccccccccC
Q psy4246         265 CATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALAT-KLWKLSEEMIQ-SVVSTWLEETTERGEVVF  328 (328)
Q Consensus       265 ~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~r~g~p~dia~~v~F  328 (328)
                      +++|+|+. +++       +.+.+++|.+.|++..++..... ......+...+ .+++|+++|||||++++|
T Consensus       159 ~~sKaal~-~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peeia~~v~f  230 (258)
T d1qsga_         159 GLAKASLE-ANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAF  230 (258)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence            99999999 877       45667888888888776643221 11222222222 248999999999999876

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.94  E-value=3.5e-28  Score=215.84  Aligned_cols=205  Identities=13%  Similarity=0.134  Sum_probs=145.6

Q ss_pred             CCCCceEEEcCCCC--CccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~--GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|+||++|||||+|  |||+++|++|+++|++|++++|+++ +++.++++...  +....++.+|+++..+++++++++.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~--~~~~~~~~~d~~~~~~~~~~~~~~~   78 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQE--LNSPYVYELDVSKEEHFKSLYNSVK   78 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHH--TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhh--CCceeEeeecccchhhHHHHHHHHH
Confidence            48999999999865  9999999999999999999999854 44556666666  4567788999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC------CCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhh
Q psy4246         198 KKFRSLNILVLNAGVFGL------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYC  265 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~  265 (328)
                      +.+|++|+||||+|+...      ......+.+...+.++..+.+.+.+.+.+.+...      ++.....+......|+
T Consensus        79 ~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~y~  158 (274)
T d2pd4a1          79 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMG  158 (274)
T ss_dssp             HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTCHHHH
T ss_pred             HHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeecccccccccccchhhh
Confidence            999999999999998522      1223334444444444444444444444433333      3333455566778899


Q ss_pred             ccCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHH-HHHH-HHHHHHhcccccccccccccC
Q psy4246         266 ATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWK-LSEE-MIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       266 ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~r~g~p~dia~~v~F  328 (328)
                      ++|+++. +++       +.+.+++|.+.|++..++......-.+ .... ....+++|+++|+|||++|+|
T Consensus       159 asK~al~-~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedIA~~v~f  229 (274)
T d2pd4a1         159 LAKAALE-SAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMY  229 (274)
T ss_dssp             HHHHHHH-HHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhhccCCcCHHHHHHHHHH
Confidence            9999998 776       446678888888877765322111011 1111 122248999999999999886

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.94  E-value=1.5e-27  Score=210.52  Aligned_cols=200  Identities=15%  Similarity=0.202  Sum_probs=149.5

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-HHHHHHHHHhhCCCCeEEEEEcccCC----HHHHHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-ANDAISKILTEKPSAQCIAMELNLCR----LKSVKKFAEEYQK  198 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~----~~~v~~~~~~~~~  198 (328)
                      .++|||||++|||+++|++|+++|++|++++|+.++ .+++.+++.... +.++..+.+|+.+    .+.++++++.+.+
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDCSFR   80 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhc-CCceEEEecccccchhHHHHHHHHHHHHHH
Confidence            379999999999999999999999999999998655 466677777665 4566677666544    5677888889999


Q ss_pred             hcCCccEEEEccccCCCC-------------CCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------------ccc
Q psy4246         199 KFRSLNILVLNAGVFGLG-------------FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------------AKL  252 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~-------------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------------ss~  252 (328)
                      ++|+||+||||||+..+.             .+.....+...+.+|+.+.+.+.+...+.+...             ++.
T Consensus        81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (266)
T d1mxha_          81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA  160 (266)
T ss_dssp             HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred             HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence            999999999999985321             123456688889999999999999888876543             344


Q ss_pred             ceecccccchhhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHHH-HHh-ccccccccc
Q psy4246         253 FARQQGAATSIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-VVS-TWLEETTER  323 (328)
Q Consensus       253 ~~~~~~~~~~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-r~g~p~dia  323 (328)
                      .+..+.++...|+++|++++ +++       +.+.++++.+.|++..++....+...+   ++.+. +++ |+++|||||
T Consensus       161 ~~~~~~~~~~~Y~asKaal~-~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~~~~~~---~~~~~~pl~r~~~~peeva  236 (266)
T d1mxha_         161 MTDLPLPGFCVYTMAKHALG-GLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQETQE---EYRRKVPLGQSEASAAQIA  236 (266)
T ss_dssp             GGGSCCTTCHHHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEESSBSCCSSSCHHHHH---HHHTTCTTTSCCBCHHHHH
T ss_pred             cccccCcchhhhhhhHHHHh-hhHHHHHHHhCccCcEEEEeccCcEeccccCCHHHHH---HHHhcCCCCCCCCCHHHHH
Confidence            55667778999999999999 777       456678888888877665433222221   22222 364 469999999


Q ss_pred             ccccC
Q psy4246         324 GEVVF  328 (328)
Q Consensus       324 ~~v~F  328 (328)
                      ++++|
T Consensus       237 ~~v~f  241 (266)
T d1mxha_         237 DAIAF  241 (266)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99887

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=6.6e-28  Score=209.56  Aligned_cols=186  Identities=10%  Similarity=0.040  Sum_probs=146.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc-
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF-  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~-  200 (328)
                      +||+||||||++|||+++|+.|+++|++|++++++....            ......+.+|.++.++++.+...+.+.+ 
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE------------ASASVIVKMTDSFTEQADQVTAEVGKLLG   68 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT------------SSEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccccceeecccCcHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999999999999875431            2355677889998999998888887765 


Q ss_pred             -CCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCcc
Q psy4246         201 -RSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLD  270 (328)
Q Consensus       201 -g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~a  270 (328)
                       ++||+||||||..   .+..+.+.++|+++|++|+.++++++++++|+|+++      ||+.+..+.++...|++||+|
T Consensus        69 ~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~~~~Y~asKaa  148 (236)
T d1dhra_          69 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGA  148 (236)
T ss_dssp             TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHH
T ss_pred             CCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCccCCcccHHHHHH
Confidence             4799999999964   334566778999999999999999999999999877      566778888899999999999


Q ss_pred             ccCCCCcc---------ccccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q psy4246         271 LSLPVSGS---------YFNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVVF  328 (328)
Q Consensus       271 l~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~F  328 (328)
                      +. +++..         ...+++.+.|+...++.  .+.      .+.+....++..|+|+|..++|
T Consensus       149 l~-~lt~~la~El~~~~~gI~vn~v~PG~v~T~~--~~~------~~~~~~~~~~~~pe~va~~~~~  206 (236)
T d1dhra_         149 VH-QLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM--NRK------SMPEADFSSWTPLEFLVETFHD  206 (236)
T ss_dssp             HH-HHHHHHTSTTSSCCTTCEEEEEEESCEECHH--HHH------HSTTSCGGGSEEHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhccCCCcEEEEEEEeccCcCCc--chh------hCccchhhcCCCHHHHHHHHHH
Confidence            99 76632         33556666666665543  221      1111126788899999887654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.93  E-value=5.4e-27  Score=207.26  Aligned_cols=204  Identities=15%  Similarity=0.133  Sum_probs=154.4

Q ss_pred             CCCCceEEEcCC--CCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGA--NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGa--s~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|+||++|||||  ++|||+++|++|+++|++|++++|+.+++.+   ++.+.. +.+...+.||+++++++..+++.+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~---~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~   78 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ---RITDRL-PAKAPLLELDVQNEEHLASLAGRVT   78 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH---HHHTTS-SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH---HHHHHc-CCceeeEeeecccccccccccchhh
Confidence            489999999995  5799999999999999999999999876533   233332 5678889999999999999999998


Q ss_pred             Hhc---CCccEEEEccccC-------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhccc-----cceecccccch
Q psy4246         198 KKF---RSLNILVLNAGVF-------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK-----LFARQQGAATS  262 (328)
Q Consensus       198 ~~~---g~id~lvnnAg~~-------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~ss-----~~~~~~~~~~~  262 (328)
                      +.+   +.||++|||||+.       .++.+.+.++|...+++|+.+.+.+.+.+.+++...+.     .....+.+...
T Consensus        79 ~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~p~~~  158 (268)
T d2h7ma1          79 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYN  158 (268)
T ss_dssp             HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCTTTH
T ss_pred             hccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccCcccc
Confidence            764   6799999999974       23457888999999999999999999988877655532     23455667888


Q ss_pred             hhhccCccccCCCC-------ccccccCccCCCCcccCCHHH-----------HHHHHHHHHHHHHH-HHh-cccccccc
Q psy4246         263 IYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEAL-----------ATKLWKLSEEMIQS-VVS-TWLEETTE  322 (328)
Q Consensus       263 ~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~-r~g~p~di  322 (328)
                      .|+++|+++. +++       +.+.+++|.+.|+...++...           ........+...+. +++ |+++|+||
T Consensus       159 ~y~~sK~a~~-~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rr~~~p~dv  237 (268)
T d2h7ma1         159 WMTVAKSALE-SVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPV  237 (268)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHH
T ss_pred             hhhccccchh-hccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCCCCCCCCCHHHH
Confidence            9999999999 777       445667787777766654321           11111122222222 254 49999999


Q ss_pred             cccccC
Q psy4246         323 RGEVVF  328 (328)
Q Consensus       323 a~~v~F  328 (328)
                      |++++|
T Consensus       238 a~~v~f  243 (268)
T d2h7ma1         238 AKTVCA  243 (268)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=7.6e-27  Score=202.98  Aligned_cols=189  Identities=19%  Similarity=0.175  Sum_probs=149.2

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|++|||||++|||+++|++|+++|++|++++|+.+              +.+...+.+|+++...+..+.......+. 
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~--------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-   65 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE--------------GEDLIYVEGDVTREEDVRRAVARAQEEAP-   65 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC--------------SSSSEEEECCTTCHHHHHHHHHHHHHHSC-
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc--------------cccceEeeccccchhhhHHHHHhhhcccc-
Confidence            589999999999999999999999999999999854              33567789999999999999888877654 


Q ss_pred             ccEEEEccccC------CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc--------------cccceecccccch
Q psy4246         203 LNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--------------AKLFARQQGAATS  262 (328)
Q Consensus       203 id~lvnnAg~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------------ss~~~~~~~~~~~  262 (328)
                      .+.+++++++.      ......+.+.|++++++|+.+++.+++.+.+.+...              ||+.+..+.++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~~  145 (241)
T d1uaya_          66 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQA  145 (241)
T ss_dssp             EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCH
T ss_pred             ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCCch
Confidence            56666666652      334567889999999999999999999999986543              6667778889999


Q ss_pred             hhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHHHHHHHHHH-H-HhcccccccccccccC
Q psy4246         263 IYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWKLSEEMIQS-V-VSTWLEETTERGEVVF  328 (328)
Q Consensus       263 ~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~r~g~p~dia~~v~F  328 (328)
                      .|+++|+|+. +++       +.+.+++|.+.|+...++..... ..+..++.... + ++|+++|||||++++|
T Consensus       146 ~Y~asKaal~-~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~-~~~~~~~~~~~~~~~~R~g~pedvA~~v~f  218 (241)
T d1uaya_         146 AYAASKGGVV-ALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL-PEKAKASLAAQVPFPPRLGRPEEYAALVLH  218 (241)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS-CHHHHHHHHTTCCSSCSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHH-HHHHHHHHHHhhcCCceeeecCCcccccccchh-hhhHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            9999999999 877       45678888888888776543221 11222222222 2 4999999999999876

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=5.7e-27  Score=203.45  Aligned_cols=184  Identities=12%  Similarity=0.060  Sum_probs=138.2

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH--hc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK--KF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~--~~  200 (328)
                      +++||||||++|||+++|++|+++|++|++++|+.+..            ......+.+|+.+.+......+.+..  .+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ------------ADSNILVDGNKNWTEQEQSILEQTASSLQG   69 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT------------SSEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc------------ccccceeccccCchhHHHHHHHHHHHHhcC
Confidence            34579999999999999999999999999999986531            23455677889888888877777766  45


Q ss_pred             CCccEEEEccccC---CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc------cccceecccccchhhhccCccc
Q psy4246         201 RSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       201 g~id~lvnnAg~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------ss~~~~~~~~~~~~y~ask~al  271 (328)
                      |+||+||||||+.   .+..+.+.+.|+.++++|+.++++++++++|+|+++      ||+.+..+.++...|+++|+|+
T Consensus        70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal  149 (235)
T d1ooea_          70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAV  149 (235)
T ss_dssp             CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHH
T ss_pred             CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCcccccchHHHHHHH
Confidence            8999999999974   234455668899999999999999999999999877      6667788888999999999999


Q ss_pred             cCCCCccc---------cccCccCCCCcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q psy4246         272 SLPVSGSY---------FNNCCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTWLEETTERGEVV  327 (328)
Q Consensus       272 ~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~g~p~dia~~v~  327 (328)
                      . +++..+         ..+++.+.|+.  .++.+.+...      .+....++..|+|++..++
T Consensus       150 ~-~l~~~la~e~~~~~~~i~v~~i~Pg~--~~T~~~~~~~------~~~~~~~~~~~~~va~~~~  205 (235)
T d1ooea_         150 H-HLTSSLAAKDSGLPDNSAVLTIMPVT--LDTPMNRKWM------PNADHSSWTPLSFISEHLL  205 (235)
T ss_dssp             H-HHHHHHHSTTSSCCTTCEEEEEEESC--BCCHHHHHHS------TTCCGGGCBCHHHHHHHHH
T ss_pred             H-HHHHHHHHHhccCCCceEEEEEecCc--CcCcchhhhC------cCCccccCCCHHHHHHHHH
Confidence            9 776432         22333344444  4444332211      1112567788888877654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.89  E-value=1.5e-24  Score=190.68  Aligned_cols=166  Identities=16%  Similarity=0.132  Sum_probs=134.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh---hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL---DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .++++|||||++|||+++|+.|+++|+ +|++++|+.   +..++..+++...  +.++.++.||++|.++++++++.+.
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~~~~~~~~i~   85 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLGGIG   85 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHHHHHhhcccc
Confidence            357999999999999999999999999 588899874   3456666666654  6799999999999999999999876


Q ss_pred             HhcCCccEEEEccccC--CCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCccc
Q psy4246         198 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDL  271 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al  271 (328)
                      +. +++|+||||||+.  .++.+.+.++|+.++++|+.|++++.+++.+.-...    ||+.+..+.++...|+++|+++
T Consensus        86 ~~-~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~~~~~~YaAaka~l  164 (259)
T d2fr1a1          86 DD-VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPGLGGYAPGNAYL  164 (259)
T ss_dssp             TT-SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTTCTTTHHHHHHH
T ss_pred             cc-ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCCcccHHHHHHHHhH
Confidence            54 6899999999985  556789999999999999999999988654421111    8888899999999999999999


Q ss_pred             cCCCCcc---ccccCccCCCCcc
Q psy4246         272 SLPVSGS---YFNNCCRCPPSKA  291 (328)
Q Consensus       272 ~~~~~g~---~~~~~~~~~~~~~  291 (328)
                      + .+...   ...+++.+.|+++
T Consensus       165 ~-~la~~~~~~Gi~v~~I~pg~~  186 (259)
T d2fr1a1         165 D-GLAQQRRSDGLPATAVAWGTW  186 (259)
T ss_dssp             H-HHHHHHHHTTCCCEEEEECCB
T ss_pred             H-HHHHHHHhCCCCEEECCCCcc
Confidence            8 66632   2334555555544

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.88  E-value=4.2e-24  Score=187.27  Aligned_cols=178  Identities=17%  Similarity=0.157  Sum_probs=128.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc-CC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF-RS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~-g~  202 (328)
                      |+||||||++|||+++|++|+++|++|++++|+.++                   ..+|+++....+....++..+. +.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~-------------------~~~d~~~~~~~~~~~~~~~~~~~~~   62 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-------------------VIADLSTAEGRKQAIADVLAKCSKG   62 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS-------------------EECCTTSHHHHHHHHHHHHTTCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH-------------------HHHHhcCHHHHHHHHHHHHHHhCCC
Confidence            899999999999999999999999999999997432                   4679999999888776665554 67


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---------------------------------
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---------------------------------  249 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---------------------------------  249 (328)
                      +|+||||||+..     ..+.+...+.+|+.+...+.+...+.+.+.                                 
T Consensus        63 id~lv~~Ag~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  137 (257)
T d1fjha_          63 MDGLVLCAGLGP-----QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEA  137 (257)
T ss_dssp             CSEEEECCCCCT-----TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHH
T ss_pred             CcEEEEcCCCCC-----cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEE
Confidence            999999999753     335678889999999999999999988765                                 


Q ss_pred             --cccceec-ccccchhhhccCccccCCCC-------ccccccCccCCCCcccCCHHHHHHHHH---HHHHHHHH--HHh
Q psy4246         250 --AKLFARQ-QGAATSIYCATSLDLSLPVS-------GSYFNNCCRCPPSKAAQDEALATKLWK---LSEEMIQS--VVS  314 (328)
Q Consensus       250 --ss~~~~~-~~~~~~~y~ask~al~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~  314 (328)
                        +++.+.. ..++...|+++|+|+. +++       +.+.+++|.+.|+...++..  +..+.   ..+...+.  +++
T Consensus       138 ~i~s~~~~~~~~~~~~~Y~asKaal~-~ltr~lA~el~~~gIrVN~I~PG~i~T~~~--~~~~~~~~~~~~~~~~~~Plg  214 (257)
T d1fjha_         138 KARAIVEHAGEQGGNLAYAGSKNALT-VAVRKRAAAWGEAGVRLNTIAPGATETPLL--QAGLQDPRYGESIAKFVPPMG  214 (257)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHHHH-HHHHHTHHHHHHTTCEEEEEEECC-----------------------CCCSTT
T ss_pred             EEeeehhccCCCcchHHHHHHhhhhh-ccccccccccccccccccccccCCcCChhH--HhhcCCHHHHHHHHhcCCCCC
Confidence              0111111 1234567999999999 877       44567888888887766432  22211   22222332  599


Q ss_pred             cccccccccccccC
Q psy4246         315 TWLEETTERGEVVF  328 (328)
Q Consensus       315 r~g~p~dia~~v~F  328 (328)
                      |+++|+|||++|+|
T Consensus       215 R~g~p~eva~~v~f  228 (257)
T d1fjha_         215 RRAEPSEMASVIAF  228 (257)
T ss_dssp             SCCCTHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHH
Confidence            99999999999987

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.77  E-value=5.4e-21  Score=160.11  Aligned_cols=144  Identities=15%  Similarity=0.117  Sum_probs=109.3

Q ss_pred             cCCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       117 ~~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      .+.+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++....   ++....+|+++.+++++++   
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~---   90 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAV---   90 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHT---
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHh---
Confidence            4678999999999999999999999999999999999999999998888886642   4556889999998877654   


Q ss_pred             HHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc---cee-cccccchhhhccC
Q psy4246         197 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL---FAR-QQGAATSIYCATS  268 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~---~~~-~~~~~~~~y~ask  268 (328)
                          +++|+||||||+.  +..++.+.|+..+++|+.+.++++..+.+.+...    ..+   ... ....+...|+++|
T Consensus        91 ----~~iDilin~Ag~g--~~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~y~~sk  164 (191)
T d1luaa1          91 ----KGAHFVFTAGAIG--LELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLKLKLHR  164 (191)
T ss_dssp             ----TTCSEEEECCCTT--CCCBCHHHHHTCTTCCEEEECCCSSSCSBTTCCTTCEEEEETTEEEECHHHHHHHHHHHHH
T ss_pred             ----cCcCeeeecCccc--cccCCHHHHHhhhcceeehhHhhHHHHHHHhhhhccCcEEecceEEEeccCcCcHHHHHHH
Confidence                6899999999974  3567899999999999888776554432222111    111   000 0112345688888


Q ss_pred             cccc
Q psy4246         269 LDLS  272 (328)
Q Consensus       269 ~al~  272 (328)
                      +++.
T Consensus       165 ~a~~  168 (191)
T d1luaa1         165 ACIA  168 (191)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.8e-17  Score=95.16  Aligned_cols=33  Identities=48%  Similarity=0.933  Sum_probs=31.9

Q ss_pred             CCCCccccceecCCCcEEEEeCcCCccccCCCC
Q psy4246          15 DELPPGWEERVTADGCVYYVNHATEGTQWTHPR   47 (328)
Q Consensus        15 ~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~   47 (328)
                      ++||+|||++++.+|++|||||+|++|||+|||
T Consensus         1 GpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR   33 (33)
T d2jmfa1           1 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR   33 (33)
T ss_dssp             SCCCTTEEEEECTTSCEEEEETTTCCEESSCCC
T ss_pred             CccCCCeeEEECCCCCEEEEECCCCcEecCCCC
Confidence            479999999999999999999999999999997

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.7e-16  Score=96.92  Aligned_cols=40  Identities=35%  Similarity=0.731  Sum_probs=36.1

Q ss_pred             CCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCCcc
Q psy4246          12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVK   51 (328)
Q Consensus        12 ~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~   51 (328)
                      .++.+||+|||++.+.+|++|||||+|++|||+|||....
T Consensus         4 ~~~~~LP~GWe~~~d~~G~~Yyinh~t~~T~w~~Pr~~~~   43 (46)
T d1jmqa_           4 PDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAML   43 (46)
T ss_dssp             CSSCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTSSS
T ss_pred             CccCCCCCCceEEECCCCCEEEEECCCCCEecCCCCcccc
Confidence            4456899999999999999999999999999999998644

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=5.9e-16  Score=97.75  Aligned_cols=41  Identities=49%  Similarity=0.991  Sum_probs=37.4

Q ss_pred             CCCCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246           9 PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus         9 ~~~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      .++|+..+||+|||++.+.+|++|||||+|++|||+|||..
T Consensus         4 ~~~~~~~pLP~gWe~~~~~~G~~YY~nh~t~~T~w~~Pr~~   44 (50)
T d1i5hw_           4 VDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ   44 (50)
T ss_dssp             CSSSCCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCCCCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence            35667789999999999999999999999999999999874

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=3.9e-16  Score=96.23  Aligned_cols=38  Identities=47%  Similarity=0.972  Sum_probs=35.0

Q ss_pred             CCCCCCCCccccceecCCCcEEEEeCcCCccccCCCCC
Q psy4246          11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT   48 (328)
Q Consensus        11 ~~~~~~lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~   48 (328)
                      -|..++||+|||++++.+|++|||||+|++|||+|||.
T Consensus         7 ~d~~gpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR~   44 (45)
T d1tk7a1           7 MDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT   44 (45)
T ss_dssp             SSTTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCC
T ss_pred             CCCCCCCCCCceEEECCCCCEEEEECCCCCEECCCCCc
Confidence            35567899999999999999999999999999999985

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=9.5e-13  Score=119.60  Aligned_cols=141  Identities=14%  Similarity=0.043  Sum_probs=98.3

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh-----HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLD-----KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~-----~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|+||||||+|-||.+++++|+++|++|++++|...     +++....+....  ..++.++.+|++|.++++++++.+ 
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~-   77 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTC--NPKFHLHYGDLSDTSNLTRILREV-   77 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-----------------------CCEEECCCCSSCHHHHHHHHHHH-
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhc--CCCeEEEEeecCCHHHHHHHHhcc-
Confidence            389999999999999999999999999999998543     222222221111  458999999999999999999876 


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc-------cc--cceec---------ccc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-------AK--LFARQ---------QGA  259 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-------ss--~~~~~---------~~~  259 (328)
                          .+|+++|+|+.....  .+.++....+++|+.|+.+|++++...-.+.       ||  ++|..         +..
T Consensus        78 ----~~d~v~h~aa~~~~~--~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~  151 (357)
T d1db3a_          78 ----QPDEVYNLGAMSHVA--VSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFY  151 (357)
T ss_dssp             ----CCSEEEECCCCCTTT--TTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCC
T ss_pred             ----CCCEEEEeecccccc--hhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCC
Confidence                799999999986422  2345567789999999999999886542211       22  22211         112


Q ss_pred             cchhhhccCcccc
Q psy4246         260 ATSIYCATSLDLS  272 (328)
Q Consensus       260 ~~~~y~ask~al~  272 (328)
                      +...|+.+|.+.+
T Consensus       152 P~~~Y~~sK~~~E  164 (357)
T d1db3a_         152 PRSPYAVAKLYAY  164 (357)
T ss_dssp             CCSHHHHHHHHHH
T ss_pred             CCChHHHHHHHHH
Confidence            3567999988776

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=1.7e-13  Score=78.30  Aligned_cols=33  Identities=39%  Similarity=0.780  Sum_probs=31.8

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR   88 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~   88 (328)
                      ++||.||++.++.+|++||+||.+++++|++||
T Consensus         1 GpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR   33 (33)
T d2jmfa1           1 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR   33 (33)
T ss_dssp             SCCCTTEEEEECTTSCEEEEETTTCCEESSCCC
T ss_pred             CccCCCeeEEECCCCCEEEEECCCCcEecCCCC
Confidence            579999999999999999999999999999997

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=9.3e-13  Score=119.03  Aligned_cols=138  Identities=18%  Similarity=0.223  Sum_probs=98.5

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH-HHH--HHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDK-AND--AISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~-~~~--~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |+||||||+|-||.+++++|+++|++|+++++.... ...  ....+.    ..++.++.+|++|.+.++.++...    
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~~~----   73 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT----KHHIPFYEVDLCDRKGLEKVFKEY----   73 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH----TSCCCEEECCTTCHHHHHHHHHHS----
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhc----ccCCeEEEeecCCHHHHHHHHhcc----
Confidence            789999999999999999999999999998753211 111  111221    347888999999999998888753    


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc--ce-------------ecccccc
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL--FA-------------RQQGAAT  261 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~--~~-------------~~~~~~~  261 (328)
                       ++|+|||+|+.....  ...+.....+.+|+.|+.++.+++...-.+.    ||.  ++             ..+..+.
T Consensus        74 -~~d~VihlAa~~~~~--~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~  150 (347)
T d1z45a2          74 -KIDSVIHFAGLKAVG--ESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPT  150 (347)
T ss_dssp             -CCCEEEECCSCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCC
T ss_pred             -CCCEEEEcccccccc--ccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCC
Confidence             799999999975321  1234456788899999999999997654333    332  22             1112235


Q ss_pred             hhhhccCcccc
Q psy4246         262 SIYCATSLDLS  272 (328)
Q Consensus       262 ~~y~ask~al~  272 (328)
                      ..|+.+|.+.+
T Consensus       151 ~~Y~~sK~~~E  161 (347)
T d1z45a2         151 NPYGHTKYAIE  161 (347)
T ss_dssp             SHHHHHHHHHH
T ss_pred             ChhHhHHHHHH
Confidence            67999998765

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.1e-13  Score=77.10  Aligned_cols=32  Identities=53%  Similarity=1.211  Sum_probs=29.9

Q ss_pred             CCCccccceecC-CCcEEEEeCcCCccccCCCC
Q psy4246          16 ELPPGWEERVTA-DGCVYYVNHATEGTQWTHPR   47 (328)
Q Consensus        16 ~lp~~w~~~~~~-~g~~~~~~~~~~~t~w~~p~   47 (328)
                      +||+||+++.++ .|++||+||.|++|||++|.
T Consensus         1 ~LP~GW~~~~d~~~G~~YY~n~~T~~T~W~~Pt   33 (34)
T d1pina1           1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPS   33 (34)
T ss_dssp             CCCTTEEEEECTTSCCEEEEETTTCCEESSCSC
T ss_pred             CcCCCcEEEECCCCCCEEEEECCCCCEEccCCC
Confidence            499999999995 79999999999999999995

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.30  E-value=6e-12  Score=115.48  Aligned_cols=117  Identities=12%  Similarity=0.081  Sum_probs=88.9

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh----------------HHHHHHHHHHhhCCCCeEEEEEcccCCH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLD----------------KANDAISKILTEKPSAQCIAMELNLCRL  186 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~----------------~~~~~~~~l~~~~~~~~~~~~~~Dls~~  186 (328)
                      ||.||||||+|-||.+++++|++.|++|+++|.-..                ...+......... +.++.++.+|++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCTTSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhc-CCCcEEEEccCCCH
Confidence            688999999999999999999999999999862110                1111111221111 45789999999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCC-CCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         187 KSVKKFAEEYQKKFRSLNILVLNAGVFGL-GFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       187 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      +.++++++..     ++|+|||.|+.... ....+.+....++.+|+.|+.++..++...
T Consensus        80 ~~l~~~~~~~-----~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~  134 (393)
T d1i24a_          80 EFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF  134 (393)
T ss_dssp             HHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh-----cchheeccccccccccccccccccccccccccccccHHHHHHHHh
Confidence            9999998876     79999999997532 233456677788999999999999988754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=4.6e-12  Score=114.01  Aligned_cols=111  Identities=15%  Similarity=0.135  Sum_probs=85.5

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh---HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLD---KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~---~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .||||||+|-||.++++.|+++|++|++++|-..   ........+.    ..++.++++|++|.+.+.++++..     
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~l~~~~~~~-----   72 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG----GKHPTFVEGDIRNEALMTEILHDH-----   72 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH----TSCCEEEECCTTCHHHHHHHHHHT-----
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc----CCCCEEEEeecCCHHHHHHHHhcc-----
Confidence            3999999999999999999999999999876321   1111122222    457889999999999998888754     


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      ++|+|||+|+...  ...+.++....+++|+.|+.++++++...-
T Consensus        73 ~~d~ViHlAa~~~--~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~  115 (338)
T d1udca_          73 AIDTVIHFAGLKA--VGESVQKPLEYYDNNVNGTLRLISAMRAAN  115 (338)
T ss_dssp             TCSEEEECCSCCC--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEECCCccc--hhhHHhCHHHHHHhHHHHHHHHHHHHHHhC
Confidence            6999999999642  122334567899999999999999987653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.25  E-value=4.5e-12  Score=114.41  Aligned_cols=115  Identities=12%  Similarity=-0.003  Sum_probs=91.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ++||+||||||+|-||.++++.|+++|++|++++|+.............   ...+.++.+|++|++.+.++++..    
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~---~~~i~~~~~Dl~d~~~l~~~~~~~----   78 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREF----   78 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc---ccCCeEEEeeccChHhhhhhhhhc----
Confidence            5899999999999999999999999999999999976544333322211   236889999999999998888765    


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                       .+|+++|.|+...  ...+.+.....+.+|+.|+.++..++...
T Consensus        79 -~~~~v~~~aa~~~--~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~  120 (356)
T d1rkxa_          79 -QPEIVFHMAAQPL--VRLSYSEPVETYSTNVMGTVYLLEAIRHV  120 (356)
T ss_dssp             -CCSEEEECCSCCC--HHHHHHCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             -hhhhhhhhhcccc--ccccccCCccccccccccchhhhhhhhcc
Confidence             7999999998742  22234566788999999999999888653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.22  E-value=2.3e-11  Score=108.53  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=85.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh-hHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSL-DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      .||||||+|-||.++++.|+++|++|+++++-. .........+..   ..++.++.+|++|.+++.++++..     ++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~~~-----~~   73 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKY-----MP   73 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHHhc-----CC
Confidence            489999999999999999999999999987421 111222223322   347889999999999999988766     69


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      |++||+|+....  ....++....+++|+.|+.++++++...
T Consensus        74 d~Vih~aa~~~~--~~~~~~~~~~~~~Nv~gt~nll~~~~~~  113 (338)
T d1orra_          74 DSCFHLAGQVAM--TTSIDNPCMDFEINVGGTLNLLEAVRQY  113 (338)
T ss_dssp             SEEEECCCCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEeecccccc--cccccChHHHHHHHHHHHHHHHHhhhcc
Confidence            999999997532  1233456788999999999999888664

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.4e-11  Score=100.53  Aligned_cols=79  Identities=13%  Similarity=0.142  Sum_probs=66.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      |..|+|+||||+|+||.+++++|+++|++|.++.|+.+++...        ....+.++.+|++|.+++.++++      
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~gD~~d~~~l~~al~------   66 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVA------   66 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHT------
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc--------cccccccccccccchhhHHHHhc------
Confidence            4568899999999999999999999999999999998764321        13468889999999998777654      


Q ss_pred             CCccEEEEccccCC
Q psy4246         201 RSLNILVLNAGVFG  214 (328)
Q Consensus       201 g~id~lvnnAg~~~  214 (328)
                       +.|+||+++|...
T Consensus        67 -~~d~vi~~~g~~~   79 (205)
T d1hdoa_          67 -GQDAVIVLLGTRN   79 (205)
T ss_dssp             -TCSEEEECCCCTT
T ss_pred             -CCCEEEEEeccCC
Confidence             6899999999753

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=8.6e-12  Score=76.48  Aligned_cols=34  Identities=38%  Similarity=0.844  Sum_probs=32.6

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      ++||.||++..+.+|++||+||.+++++|++||+
T Consensus        11 gpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR~   44 (45)
T d1tk7a1          11 GPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT   44 (45)
T ss_dssp             SSSSSSCCEEEETTTEEEEEETTTTEEEEESCCC
T ss_pred             CCCCCCceEEECCCCCEEEEECCCCCEECCCCCc
Confidence            5799999999999999999999999999999986

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.8e-11  Score=110.04  Aligned_cols=115  Identities=15%  Similarity=-0.007  Sum_probs=83.5

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh-----HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLD-----KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~-----~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |+||||||+|-||.+++++|.++|++|+.++|...     .++........ ....++.++.+|++|.+.+..++...  
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~--   78 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQA-HIEGNMKLHYGDLTDSTCLVKIINEV--   78 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhh-hccCCcEEEEeecCCchhhHHHHhhc--
Confidence            44599999999999999999999999999998542     11111111111 11347899999999999999998876  


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                         .++++++.|+...  .....+.....+++|+.|+.++..++..+-
T Consensus        79 ---~~~~v~~~~a~~~--~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~  121 (347)
T d1t2aa_          79 ---KPTEIYNLGAQSH--VKISFDLAEYTADVDGVGTLRLLDAVKTCG  121 (347)
T ss_dssp             ---CCSEEEECCSCCC--HHHHHHSHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred             ---ccceeeeeeeccc--cchhhccchhhhhhHHHHHHHHHHHHHHcC
Confidence               7889999888642  122334556678999999999998886653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.15  E-value=5.6e-11  Score=106.92  Aligned_cols=112  Identities=15%  Similarity=0.101  Sum_probs=86.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +||+||||||+|-||.++++.|+++|++|+++.|+..+...................+..|++|.+++.+++.       
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------   82 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK-------   82 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT-------
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc-------
Confidence            5899999999999999999999999999999999987765554433333334455667899999988766553       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      .+|+++|+|+....  ..+   ....+..|+.|+.++.+.+...
T Consensus        83 ~~~~v~~~a~~~~~--~~~---~~~~~~~nv~gt~~ll~~~~~~  121 (342)
T d1y1pa1          83 GAAGVAHIASVVSF--SNK---YDEVVTPAIGGTLNALRAAAAT  121 (342)
T ss_dssp             TCSEEEECCCCCSC--CSC---HHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cchhhhhhcccccc--ccc---ccccccchhhhHHHHHHhhhcc
Confidence            68999999997532  222   3466788999999999888663

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=8e-11  Score=105.29  Aligned_cols=117  Identities=15%  Similarity=0.003  Sum_probs=86.9

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh-----HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLD-----KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~-----~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      |++|||||+|-||.++++.|+++|++|+.++|...     +...+...... .....+.++.+|+++.++++..++..  
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Di~~~~~~~~~~~~~--   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHN-VNKALMKLHYADLTDASSLRRWIDVI--   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH--
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhh-ccccceEEEEccccCHHHHHHHHhhh--
Confidence            78999999999999999999999999999998432     21111111111 11346889999999999999888764  


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  248 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~  248 (328)
                         ++|++||+|+....  ....+.....+.+|+.|...+..++.....+
T Consensus        79 ---~~D~Vih~Aa~~~~--~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~  123 (339)
T d1n7ha_          79 ---KPDEVYNLAAQSHV--AVSFEIPDYTADVVATGALRLLEAVRSHTID  123 (339)
T ss_dssp             ---CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             ---ccchhhhccccccc--cccccCccccccccccccchhhhhhhhcccc
Confidence               79999999997531  2233556788899999999998888765443

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=2.2e-11  Score=76.48  Aligned_cols=37  Identities=35%  Similarity=0.750  Sum_probs=34.1

Q ss_pred             cCCCCCCCeeeeeCCCcEEEEeccCcccccCCCccch
Q psy4246          55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVF   91 (328)
Q Consensus        55 ~~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~   91 (328)
                      .++||.||++.++.+|+.||+||.++.++|++||+..
T Consensus         9 ~~pLP~gWe~~~~~~G~~YY~nh~t~~T~w~~Pr~~~   45 (50)
T d1i5hw_           9 LGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQN   45 (50)
T ss_dssp             CSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTSC
T ss_pred             CCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCCCC
Confidence            4679999999999999999999999999999998653

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.08  E-value=1e-10  Score=103.77  Aligned_cols=139  Identities=17%  Similarity=0.001  Sum_probs=98.1

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH-HHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN-DAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      |+||||||+|.||.++++.|+++|++|+.++|...... ...+.+   ....++.++.+|++|...+.+++...     .
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~   72 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL---GIEGDIQYEDGDMADACSVQRAVIKA-----Q   72 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHT---TCGGGEEEEECCTTCHHHHHHHHHHH-----C
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHh---cccCCcEEEEccccChHHhhhhhccc-----c
Confidence            78999999999999999999999999999998643211 111222   22357899999999999998888775     6


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc---ce---------ecccccchhhhc
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL---FA---------RQQGAATSIYCA  266 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~---~~---------~~~~~~~~~y~a  266 (328)
                      .++++++|+.....  ...+.....+.+|+.|+.+++.++...-.+.    +|.   .+         ..+......|+.
T Consensus        73 ~~~~~~~a~~~~~~--~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~~~Y~~  150 (321)
T d1rpna_          73 PQEVYNLAAQSFVG--ASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGV  150 (321)
T ss_dssp             CSEEEECCSCCCHH--HHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHH
T ss_pred             cccccccccccccc--ccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCccccChhHH
Confidence            78888888764211  1223456889999999999998886643332    121   11         111124567888


Q ss_pred             cCcccc
Q psy4246         267 TSLDLS  272 (328)
Q Consensus       267 sk~al~  272 (328)
                      +|.+.+
T Consensus       151 sK~~~E  156 (321)
T d1rpna_         151 AKLYGH  156 (321)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888776

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1e-10  Score=105.21  Aligned_cols=113  Identities=13%  Similarity=0.121  Sum_probs=83.6

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC------hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRS------LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~------~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      |+||||||+|-||.+++++|+++|++|+++++.      ..........+... ...++.++.+|++|.+.+++++..  
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~l~~~~~~--   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL-TGRSVEFEEMDILDQGALQRLFKK--   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH-HTCCCEEEECCTTCHHHHHHHHHH--
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh-cCCCcEEEEeeccccccccccccc--
Confidence            678999999999999999999999999998641      11111111111111 145789999999999999887765  


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                         ..+++++|.|+..+.  ..+.++....+++|+.|+.++..++..
T Consensus        80 ---~~~~~i~h~Aa~~~~--~~~~~~p~~~~~~Nv~gt~~l~~~~~~  121 (346)
T d1ek6a_          80 ---YSFMAVIHFAGLKAV--GESVQKPLDYYRVNLTGTIQLLEIMKA  121 (346)
T ss_dssp             ---CCEEEEEECCSCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cccccccccccccCc--HhhHhCHHHHHHhhhcccccccchhhh
Confidence               378899999997532  223344567899999999999888754

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.05  E-value=7.9e-11  Score=106.86  Aligned_cols=114  Identities=12%  Similarity=0.141  Sum_probs=84.1

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEE-eeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVIL-ACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~-~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      .||||||+|-||.+++++|++.|++|++ +++......  ...+.......++.++.+|++|...++.+++..     .+
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-----~~   74 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN--LESLSDISESNRYNFEHADICDSAEITRIFEQY-----QP   74 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC--GGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcccc--HHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhC-----CC
Confidence            4899999999999999999999997554 443211100  011112222458999999999999999888765     79


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI  247 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~  247 (328)
                      |+|||+|+....  ..+.++...++++|+.|+.++.+++.....
T Consensus        75 d~VihlAa~~~~--~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~  116 (361)
T d1kewa_          75 DAVMHLAAESHV--DRSITGPAAFIETNIVGTYALLEVARKYWS  116 (361)
T ss_dssp             SEEEECCSCCCH--HHHHHCTHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CEEEECccccch--hhHHhCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999997432  223344567899999999999999987654

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=8.3e-11  Score=68.78  Aligned_cols=33  Identities=36%  Similarity=0.635  Sum_probs=30.9

Q ss_pred             CCccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          17 LPPGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        17 lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      .+..|++..+++|++||+|+.|++|+|++|...
T Consensus         4 ~~s~W~e~~~~~Gr~YY~N~~T~~s~We~P~el   36 (37)
T d2rm0w1           4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL   36 (37)
T ss_dssp             CSCCEEEEECTTCCEEEEETTTTEEESSCCSSC
T ss_pred             CccCCEEEECCCCCEEEEECCCCCEeCCCcccc
Confidence            578899999999999999999999999999875

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.1e-11  Score=73.04  Aligned_cols=36  Identities=33%  Similarity=0.601  Sum_probs=33.3

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCccch
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVF   91 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~~   91 (328)
                      .+||.||++..+.+|++||+||.++.++|++||...
T Consensus         7 ~~LP~GWe~~~d~~G~~Yyinh~t~~T~w~~Pr~~~   42 (46)
T d1jmqa_           7 VPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAM   42 (46)
T ss_dssp             CCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTSS
T ss_pred             CCCCCCceEEECCCCCEEEEECCCCCEecCCCCccc
Confidence            469999999999999999999999999999998654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=5.9e-10  Score=93.88  Aligned_cols=107  Identities=13%  Similarity=0.012  Sum_probs=79.0

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCe--EEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCR--VILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~--Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++||||||+|.||.++++.|+++|+.  |+...|+.++....         ..++.++.+|+++.+++.++++       
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~---------~~~~~~~~~d~~~~~~~~~~~~-------   67 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIGDITDADSINPAFQ-------   67 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT---------TCCTTEEECCTTSHHHHHHHHT-------
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc---------cCCcEEEEeeeccccccccccc-------
Confidence            68999999999999999999999975  55567877653321         3467789999999998777654       


Q ss_pred             CccEEEEccccCCC-----------CCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         202 SLNILVLNAGVFGL-----------GFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       202 ~id~lvnnAg~~~~-----------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      .+|.+||+|+....           ........+.....+|+.|+..+........
T Consensus        68 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (252)
T d2q46a1          68 GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG  123 (252)
T ss_dssp             TCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT
T ss_pred             cceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc
Confidence            68999999986311           1112223456677889999888877665543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.99  E-value=5.8e-10  Score=101.59  Aligned_cols=117  Identities=9%  Similarity=0.059  Sum_probs=84.8

Q ss_pred             ceEEEcCCCCCccHHHHHHHHH-CCCeEEEeeC---------ChhHHHHHHHHHHhh------CCCCeEEEEEcccCCHH
Q psy4246         124 YNAIVTGANTGIGFETARSLAL-HGCRVILACR---------SLDKANDAISKILTE------KPSAQCIAMELNLCRLK  187 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~-~Ga~Vi~~~r---------~~~~~~~~~~~l~~~------~~~~~~~~~~~Dls~~~  187 (328)
                      ..||||||+|-||.+++++|++ .|++|+++|+         ..+..+.....+...      .....+.++.+|++|.+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~   82 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED   82 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHH
Confidence            3599999999999999999986 6899999874         112223333333221      11346888999999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       188 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                      .++++++.    +.++|+|||.|+....  ....+.....+++|+.++..+..++...-
T Consensus        83 ~l~~~~~~----~~~~d~ViH~Aa~~~~--~~~~~~~~~~~~~N~~~t~~~l~~~~~~~  135 (383)
T d1gy8a_          83 FLNGVFTR----HGPIDAVVHMCAFLAV--GESVRDPLKYYDNNVVGILRLLQAMLLHK  135 (383)
T ss_dssp             HHHHHHHH----SCCCCEEEECCCCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             Hhhhhhhc----cceeehhhcccccccc--cccccccccccccccccccccchhhhccC
Confidence            88887764    3679999999997532  12334456788999999999998886643

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.97  E-value=3.8e-10  Score=101.14  Aligned_cols=142  Identities=13%  Similarity=0.108  Sum_probs=96.4

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh----HHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD----KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ++-|++|||||+|.||.+++++|.++|++|++++|...    ..... ..+.......++.++.+|+.|........   
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~d~~~~~~~~---   89 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEV-RSLVSEKQWSNFKFIQGDIRNLDDCNNAC---   89 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHH-HHHSCHHHHTTEEEEECCTTSHHHHHHHH---
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHH-HHhhhhcccCCeeEEeecccccccccccc---
Confidence            35689999999999999999999999999999986322    22221 11111111246889999999987655433   


Q ss_pred             HHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccc--cee---------cccccc
Q psy4246         197 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKL--FAR---------QQGAAT  261 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~--~~~---------~~~~~~  261 (328)
                          ...+.+++.++....  ..+.++....+++|+.|+.++..++...-.+.    ||.  ++.         .+....
T Consensus        90 ----~~~~~v~~~~a~~~~--~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~  163 (341)
T d1sb8a_          90 ----AGVDYVLHQAALGSV--PRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPL  163 (341)
T ss_dssp             ----TTCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCC
T ss_pred             ----ccccccccccccccc--cccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCCCCCCCC
Confidence                367888888875421  22456778899999999999999886543222    222  211         112234


Q ss_pred             hhhhccCcccc
Q psy4246         262 SIYCATSLDLS  272 (328)
Q Consensus       262 ~~y~ask~al~  272 (328)
                      ..|+.+|.+.+
T Consensus       164 ~~Y~~sK~~~E  174 (341)
T d1sb8a_         164 SPYAVTKYVNE  174 (341)
T ss_dssp             SHHHHHHHHHH
T ss_pred             CcchHHHHHHH
Confidence            77888888877

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.96  E-value=9.2e-11  Score=105.56  Aligned_cols=112  Identities=14%  Similarity=0.033  Sum_probs=78.8

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC--hhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRS--LDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.||||||+|-||.++++.|.++|+.|.+++++  .....  ...+. ...+.++.++.+|++|.+.+..++.      
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~--~~~~~-~~~~~~i~~~~~Di~d~~~~~~~~~------   72 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLE-AILGDRVELVVGDIADAELVDKLAA------   72 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTG-GGCSSSEEEEECCTTCHHHHHHHHT------
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc--HHHHH-HhhcCCeEEEEccCCCHHHHHHHHh------
Confidence            4689999999999999999999999875444332  10000  00001 1124589999999999988877754      


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  246 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  246 (328)
                       ..|.+++.|+.....  ....+....+++|+.|+.+++..+...-
T Consensus        73 -~~~~v~~~a~~~~~~--~~~~~~~~~~~~N~~g~~nll~~~~~~~  115 (346)
T d1oc2a_          73 -KADAIVHYAAESHND--NSLNDPSPFIHTNFIGTYTLLEAARKYD  115 (346)
T ss_dssp             -TCSEEEECCSCCCHH--HHHHCCHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             -hhhhhhhhhhccccc--chhhCcccceeeehHhHHhhhhhhcccc
Confidence             578899999875321  1223456789999999999998886654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=3.7e-10  Score=99.90  Aligned_cols=122  Identities=13%  Similarity=0.075  Sum_probs=88.2

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      .|.||||||+|-||.+++++|+++|+.|+++++..                      .+|+.+.+.+.++++.-     .
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~----------------------~~~~~~~~~~~~~~~~~-----~   54 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASE-----R   54 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch----------------------hccccCHHHHHHHHhhc-----C
Confidence            46899999999999999999999999988776432                      26899999988887643     6


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----ccccee----------------cccccch
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFAR----------------QQGAATS  262 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~----------------~~~~~~~  262 (328)
                      +|+++|+|+..+.. ..........+++|+.|+.++++++..+=.++    ||....                ...+...
T Consensus        55 ~d~v~~~a~~~~~~-~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~  133 (315)
T d1e6ua_          55 IDQVYLAAAKVGGI-VANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNE  133 (315)
T ss_dssp             CSEEEECCCCCCCH-HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGH
T ss_pred             CCEEEEcchhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCC
Confidence            99999999875321 12334456678899999999998886653222    333211                1112345


Q ss_pred             hhhccCcccc
Q psy4246         263 IYCATSLDLS  272 (328)
Q Consensus       263 ~y~ask~al~  272 (328)
                      .|+.+|.+.+
T Consensus       134 ~Y~~sK~~~E  143 (315)
T d1e6ua_         134 PYAIAKIAGI  143 (315)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6999988877

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=9.8e-10  Score=98.32  Aligned_cols=106  Identities=9%  Similarity=-0.003  Sum_probs=79.5

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         125 NAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      .||||||+|-||.+++++|+++| .+|+++++........       ....++.++.+|+++.+.+.+.+.   +   ++
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~-------~~~~~~~~i~~Di~~~~~~~~~~~---~---~~   68 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF-------LNHPHFHFVEGDISIHSEWIEYHV---K---KC   68 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG-------TTCTTEEEEECCTTTCSHHHHHHH---H---HC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh-------ccCCCeEEEECccCChHHHHHHHH---h---CC
Confidence            48999999999999999999999 4899988765432221       114579999999998776544332   1   48


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      |++||+|+.....  ...+.....+.+|+.|+.++++.+...
T Consensus        69 d~Vih~a~~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~~  108 (342)
T d2blla1          69 DVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVKY  108 (342)
T ss_dssp             SEEEECBCCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHHHT
T ss_pred             Ccccccccccccc--ccccCCccccccccccccccccccccc
Confidence            9999999975321  123444678999999999999998654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.88  E-value=4.2e-10  Score=101.67  Aligned_cols=111  Identities=18%  Similarity=0.091  Sum_probs=81.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++..||||||+|-||.+++++|.++|++|+++++......      ...  -....+..+|+.+.+.+..+++       
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~------~~~--~~~~~~~~~D~~~~~~~~~~~~-------   78 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM------TED--MFCDEFHLVDLRVMENCLKVTE-------   78 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSS------CGG--GTCSEEEECCTTSHHHHHHHHT-------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccch------hhh--cccCcEEEeechhHHHHHHHhh-------
Confidence            4556999999999999999999999999999987543210      000  1244677889998877655443       


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  248 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~  248 (328)
                      .+|++||.|+..... ....+.....+.+|+.++.+++.++...-.+
T Consensus        79 ~~d~Vih~a~~~~~~-~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk  124 (363)
T d2c5aa1          79 GVDHVFNLAADMGGM-GFIQSNHSVIMYNNTMISFNMIEAARINGIK  124 (363)
T ss_dssp             TCSEEEECCCCCCCH-HHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             cCCeEeecccccccc-cccccccccccccccchhhHHHHhHHhhCcc
Confidence            689999999875321 1123456778899999999999988765433

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8e-10  Score=93.76  Aligned_cols=131  Identities=13%  Similarity=0.093  Sum_probs=89.7

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|++|+||||||+|.||.+++++|.++|.  +|++++|+.......      .  ...+....+|+.+.+++...     
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~------~--~~~i~~~~~D~~~~~~~~~~-----   77 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE------A--YKNVNQEVVDFEKLDDYASA-----   77 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG------G--GGGCEEEECCGGGGGGGGGG-----
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc------c--cceeeeeeeccccccccccc-----
Confidence            47889999999999999999999999995  899999975432110      0  23566677888876654433     


Q ss_pred             HhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCcccc
Q psy4246         198 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~  272 (328)
                        +...|++||+||...     ..........+|+.++..+++.+...-.+.    |+...  .......|+.+|...+
T Consensus        78 --~~~~d~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~--~~~~~~~Y~~~K~~~E  147 (232)
T d2bkaa1          78 --FQGHDVGFCCLGTTR-----GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA--DKSSNFLYLQVKGEVE  147 (232)
T ss_dssp             --GSSCSEEEECCCCCH-----HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC--CTTCSSHHHHHHHHHH
T ss_pred             --ccccccccccccccc-----cccchhhhhhhcccccceeeecccccCccccccCCcccc--ccCccchhHHHHHHhh
Confidence              347999999998641     233456667889999999888875422221    22221  1223456888887655

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=1.3e-09  Score=59.46  Aligned_cols=28  Identities=36%  Similarity=0.788  Sum_probs=26.5

Q ss_pred             ccccceecCCCcEEEEeCcCCccccCCC
Q psy4246          19 PGWEERVTADGCVYYVNHATEGTQWTHP   46 (328)
Q Consensus        19 ~~w~~~~~~~g~~~~~~~~~~~t~w~~p   46 (328)
                      ..|++..+++|++||+|..|+.|+|++|
T Consensus         2 s~W~e~~~~~G~~YYyN~~T~eS~WekP   29 (29)
T d1o6wa1           2 SIWKEAKDASGRIYYYNTLTKKSTWEKP   29 (29)
T ss_dssp             CCEEEEECTTCCEEEEETTTTEEESSCC
T ss_pred             CccEEEECCCCCEEEeECCCCCEecCCC
Confidence            4699999999999999999999999998

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.1e-09  Score=61.85  Aligned_cols=32  Identities=34%  Similarity=0.814  Sum_probs=29.6

Q ss_pred             CCCCCCeeeeeC-CCcEEEEeccCcccccCCCc
Q psy4246          57 DLPLGWEKSVSE-DGKITFYNKDTHVKTYTDPR   88 (328)
Q Consensus        57 ~lp~gw~~~~~~-~g~~yy~n~~~~~~~~~~P~   88 (328)
                      .||.||++..+. .|+.||+|+.+++++|++|.
T Consensus         1 ~LP~GW~~~~d~~~G~~YY~n~~T~~T~W~~Pt   33 (34)
T d1pina1           1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPS   33 (34)
T ss_dssp             CCCTTEEEEECTTSCCEEEEETTTCCEESSCSC
T ss_pred             CcCCCcEEEECCCCCCEEEEECCCCCEEccCCC
Confidence            489999999996 59999999999999999995

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.1e-09  Score=59.33  Aligned_cols=27  Identities=37%  Similarity=0.845  Sum_probs=26.0

Q ss_pred             cccceecCCCcEEEEeCcCCccccCCC
Q psy4246          20 GWEERVTADGCVYYVNHATEGTQWTHP   46 (328)
Q Consensus        20 ~w~~~~~~~g~~~~~~~~~~~t~w~~p   46 (328)
                      .|.+..+++|++||+|..|+.|+|++|
T Consensus         2 ~W~e~~~~~G~~YYyN~~T~eS~We~P   28 (28)
T d1ywia1           2 MWTEHKSPDGRTYYYNTETKQSTWEKP   28 (28)
T ss_dssp             CEEEEEETTTEEEEEETTTTEEEESCC
T ss_pred             ccEEEECCCCCEEEeECCCCCEecCCC
Confidence            699999999999999999999999998

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=2.9e-09  Score=64.97  Aligned_cols=31  Identities=48%  Similarity=0.825  Sum_probs=29.1

Q ss_pred             ccccceecCCCcEEEEeCcCCccccCCCCCC
Q psy4246          19 PGWEERVTADGCVYYVNHATEGTQWTHPRTG   49 (328)
Q Consensus        19 ~~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~   49 (328)
                      .+|++..+++||+||+|+.|+.|+|++|+..
T Consensus        14 ~~W~e~~~~~Gr~YYyN~~T~es~We~P~~~   44 (46)
T d1o6wa2          14 NGWKAAKTADGKVYYYNPTTRETSWTIPAFE   44 (46)
T ss_dssp             HTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred             CCCeEEECCCCCEEEEECCCCCEecCCCccc
Confidence            5899999999999999999999999999864

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.70  E-value=1.5e-08  Score=87.55  Aligned_cols=91  Identities=21%  Similarity=0.301  Sum_probs=72.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .||||||+|.||.+++++|.++|++|+.++|+.                       +|++|.++++++++..     ++|
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-----------------------~D~~d~~~~~~~l~~~-----~~d   54 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD-----------------------LDITNVLAVNKFFNEK-----KPN   54 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-----------------------CCTTCHHHHHHHHHHH-----CCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh-----------------------ccCCCHHHHHHHHHHc-----CCC
Confidence            389999999999999999999999999998752                       5899999998888765     789


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                      +|||+|+....  +......+..+..|+.....+...+...
T Consensus        55 ~vih~a~~~~~--~~~~~~~~~~~~~n~~~~~~~~~~~~~~   93 (281)
T d1vl0a_          55 VVINCAAHTAV--DKCEEQYDLAYKINAIGPKNLAAAAYSV   93 (281)
T ss_dssp             EEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             EEEeecccccc--ccccccchhhcccccccccccccccccc
Confidence            99999987531  2233445677788888887776666443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.3e-09  Score=92.00  Aligned_cols=135  Identities=7%  Similarity=0.006  Sum_probs=86.4

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |.||||||+|-||.+++++|+++|++|+++++....-.+.   +.......++.....|+.+.            .+.++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~------------~~~~~   66 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN---VEHWIGHENFELINHDVVEP------------LYIEV   66 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG---TGGGTTCTTEEEEECCTTSC------------CCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHH---HHHhcCCCceEEEehHHHHH------------HHcCC
Confidence            7899999999999999999999999999998632211111   11111123455566665432            12369


Q ss_pred             cEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---ccc--cee--------------cccccchhh
Q psy4246         204 NILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKL--FAR--------------QQGAATSIY  264 (328)
Q Consensus       204 d~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~--~~~--------------~~~~~~~~y  264 (328)
                      |+|||+|+.....  ...++..+.+++|+.|+.++++++...-.+-   ||.  ++.              .+......|
T Consensus        67 d~VihlAa~~~~~--~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y  144 (312)
T d2b69a1          67 DQIYHLASPASPP--NYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACY  144 (312)
T ss_dssp             SEEEECCSCCSHH--HHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHH
T ss_pred             CEEEECcccCCch--hHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCCCCCCCccccCCCCCCCCccHH
Confidence            9999999975321  1123456789999999999998886542211   222  211              111245679


Q ss_pred             hccCccccCCCC
Q psy4246         265 CATSLDLSLPVS  276 (328)
Q Consensus       265 ~ask~al~~~~~  276 (328)
                      +.+|.+.+ .+.
T Consensus       145 ~~sK~~~E-~~~  155 (312)
T d2b69a1         145 DEGKRVAE-TMC  155 (312)
T ss_dssp             HHHHHHHH-HHH
T ss_pred             HHHHHHHH-HHH
Confidence            99998877 444

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=98.65  E-value=8.5e-09  Score=89.59  Aligned_cols=93  Identities=17%  Similarity=0.146  Sum_probs=71.1

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .||||||+|-||.++++.|.++|..| .++++...                   +.+|++|.+.++++++..     ++|
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~-------------------~~~Dl~~~~~~~~~i~~~-----~~D   56 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE-------------------FCGDFSNPKGVAETVRKL-----RPD   56 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS-------------------SCCCTTCHHHHHHHHHHH-----CCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc-------------------ccCcCCCHHHHHHHHHHc-----CCC
Confidence            49999999999999999999998644 44443211                   347999999999988765     699


Q ss_pred             EEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHH
Q psy4246         205 ILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLEN  244 (328)
Q Consensus       205 ~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  244 (328)
                      +|||+||+....  .+.+.-...+++|+.++..+..++..
T Consensus        57 ~Vih~Aa~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~   94 (298)
T d1n2sa_          57 VIVNAAAHTAVD--KAESEPELAQLLNATSVEAIAKAANE   94 (298)
T ss_dssp             EEEECCCCCCHH--HHTTCHHHHHHHHTHHHHHHHHHHTT
T ss_pred             EEEEeccccccc--ccccCccccccccccccccchhhhhc
Confidence            999999975321  12234467889999999998887743

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=98.61  E-value=2.3e-08  Score=87.23  Aligned_cols=78  Identities=10%  Similarity=0.077  Sum_probs=59.7

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH----HHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN----DAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~----~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++||||||+|.||.+++++|+++|++|+++.|+.....    .....+.    ...+.++.+|++|.+.+.+++.     
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~----~~~v~~v~~d~~d~~~~~~~~~-----   74 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK----QLGAKLIEASLDDHQRLVDALK-----   74 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH----TTTCEEECCCSSCHHHHHHHHT-----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhc----cCCcEEEEeecccchhhhhhcc-----
Confidence            45999999999999999999999999999998653211    1122222    3468889999999988776654     


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                        ..+.++++++.
T Consensus        75 --~~~~~~~~~~~   85 (312)
T d1qyda_          75 --QVDVVISALAG   85 (312)
T ss_dssp             --TCSEEEECCCC
T ss_pred             --Ccchhhhhhhh
Confidence              67888888875

>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: WW domain-binding protein 4, WBP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.1e-08  Score=58.53  Aligned_cols=33  Identities=27%  Similarity=0.618  Sum_probs=29.5

Q ss_pred             cccceecCCCcEEEEeCcCCccccCCCCCCccc
Q psy4246          20 GWEERVTADGCVYYVNHATEGTQWTHPRTGVKK   52 (328)
Q Consensus        20 ~w~~~~~~~g~~~~~~~~~~~t~w~~p~~~~~~   52 (328)
                      .|.+..+++|++||+|..|+.|+|++|......
T Consensus         2 ~W~e~~~~~G~~YYyN~~T~eS~We~P~~~~~~   34 (38)
T d2dk1a1           2 RWVEGITSEGYHYYYDLISGASQWEKPEGFQGD   34 (38)
T ss_dssp             CEEECCCSTTCCCEEESSSCCEESSCCTTCCCC
T ss_pred             CCeEEECCCCCEEEEECCCCCEecCCChhHhcc
Confidence            499999999999999999999999999876543

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.49  E-value=9.1e-08  Score=84.53  Aligned_cols=110  Identities=15%  Similarity=0.037  Sum_probs=75.8

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeE------EEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRV------ILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~V------i~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .||||||+|-||.++++.|+++|+.|      +..+........  ..+.......++.++.+|+++........     
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----   74 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--ANLAPVDADPRLRFVHGDIRDAGLLAREL-----   74 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--GGGGGGTTCTTEEEEECCTTCHHHHHHHT-----
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH--hHhhhhhcCCCeEEEEeccccchhhhccc-----
Confidence            48999999999999999999999754      333321110000  01111112457899999999987655432     


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA  245 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  245 (328)
                        ...|+++|.|+...  ...........+++|+.|+.++++++...
T Consensus        75 --~~~d~vi~~a~~~~--~~~~~~~~~~~~~~N~~gt~~ll~~~~~~  117 (322)
T d1r6da_          75 --RGVDAIVHFAAESH--VDRSIAGASVFTETNVQGTQTLLQCAVDA  117 (322)
T ss_dssp             --TTCCEEEECCSCCC--HHHHHHCCHHHHHHHTHHHHHHHHHHHHT
T ss_pred             --cccceEEeeccccc--ccccccchHHHhhhhHHHHHHHHHHHHHc
Confidence              47899999998742  12234455678899999999999988654

>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 1, APBB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5.3e-08  Score=52.94  Aligned_cols=30  Identities=40%  Similarity=0.811  Sum_probs=28.6

Q ss_pred             CCccccceecCCCcEEEEeCcCCccccCCCC
Q psy4246          17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR   47 (328)
Q Consensus        17 lp~~w~~~~~~~g~~~~~~~~~~~t~w~~p~   47 (328)
                      ||+||++..+..| .||..--|.+|||++|.
T Consensus         3 LPpGW~ki~D~~G-~YYWHiptGttQwe~P~   32 (33)
T d2ho2a1           3 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG   32 (33)
T ss_dssp             SCTTEEEEECSSC-EEEEETTTTEEESSCCC
T ss_pred             CCCcceeeecCCC-ceEEEecCCcccccCCC
Confidence            9999999999999 99999999999999994

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=98.44  E-value=3e-07  Score=79.32  Aligned_cols=82  Identities=13%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH--HHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAN--DAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|+||||||+|.||.+++++|+++|++|++++|+.....  .....+.... ...+.++.+|+.+.....+.++      
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~------   75 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVK------   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHH------
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhc-cCCcEEEEeecccchhhhhhhh------
Confidence            578999999999999999999999999999998654321  1111111111 3457788999999988776664      


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                       ..+.+|++++.
T Consensus        76 -~~~~vi~~~~~   86 (307)
T d1qyca_          76 -NVDVVISTVGS   86 (307)
T ss_dssp             -TCSEEEECCCG
T ss_pred             -hceeeeecccc
Confidence             57888888873

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=98.38  E-value=3.3e-07  Score=81.70  Aligned_cols=78  Identities=17%  Similarity=0.153  Sum_probs=58.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHH-HHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSV-KKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v-~~~~~~~~~~~  200 (328)
                      +.|+|+||||+|.||.+++++|+++|++|+++.|+......  ..+..   ...+.++.+|+.|..++ +.+       +
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~---~~~v~~~~gD~~d~~~~~~~a-------~   69 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQA---IPNVTLFQGPLLNNVPLMDTL-------F   69 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHT---STTEEEEESCCTTCHHHHHHH-------H
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcc---cCCCEEEEeeCCCcHHHHHHH-------h
Confidence            46899999999999999999999999999999998765432  22222   24688999999986543 222       3


Q ss_pred             CCccEEEEccc
Q psy4246         201 RSLNILVLNAG  211 (328)
Q Consensus       201 g~id~lvnnAg  211 (328)
                      ...|.++.+..
T Consensus        70 ~~~~~~~~~~~   80 (350)
T d1xgka_          70 EGAHLAFINTT   80 (350)
T ss_dssp             TTCSEEEECCC
T ss_pred             cCCceEEeecc
Confidence            46788777654

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=2e-07  Score=54.10  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCcc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI   89 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~   89 (328)
                      +.++..|++..+++|++||+|+.+++++|+.|..
T Consensus         2 A~~~s~W~e~~~~~Gr~YY~N~~T~~s~We~P~e   35 (37)
T d2rm0w1           2 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQE   35 (37)
T ss_dssp             CCCSCCEEEEECTTCCEEEEETTTTEEESSCCSS
T ss_pred             CCCccCCEEEECCCCCEEEEECCCCCEeCCCccc
Confidence            3578899999999999999999999999999963

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.24  E-value=6e-07  Score=72.66  Aligned_cols=46  Identities=20%  Similarity=0.246  Sum_probs=41.3

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK  171 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~  171 (328)
                      +.|+||+|+||+++|+.|+++|++|++.+|++++++++.+++....
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~   48 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA   48 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            5677888999999999999999999999999999999988887653

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.24  E-value=3.2e-07  Score=75.85  Aligned_cols=123  Identities=13%  Similarity=0.039  Sum_probs=77.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.+|||||+|.||.+++++|+++|+  +|++..|+...          .  ..+   +..++.|..++.   +   ...
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~----------~--~~~---~~~~~~d~~~~~---~---~~~   60 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------E--HPR---LDNPVGPLAELL---P---QLD   60 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------C--CTT---EECCBSCHHHHG---G---GCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh----------h--ccc---ccccccchhhhh---h---ccc
Confidence            47899999999999999999999997  66766765321          0  112   344455543321   1   223


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCcccc
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSLDLS  272 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~al~  272 (328)
                      +.+|.+|+++|....    ....-....++|+.++..+++++...-.+.    |+..+  .......|..+|...+
T Consensus        61 ~~~d~vi~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~--~~~~~~~y~~~K~~~E  130 (212)
T d2a35a1          61 GSIDTAFCCLGTTIK----EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGA--DAKSSIFYNRVKGELE  130 (212)
T ss_dssp             SCCSEEEECCCCCHH----HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC--CTTCSSHHHHHHHHHH
T ss_pred             cchheeeeeeeeecc----ccccccccccchhhhhhhccccccccccccccccccccc--ccccccchhHHHHHHh
Confidence            679999999987411    111235678899999999988875432222    22211  1223456777777554

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=5.6e-07  Score=48.80  Aligned_cols=28  Identities=29%  Similarity=0.604  Sum_probs=26.5

Q ss_pred             CCCeeeeeCCCcEEEEeccCcccccCCC
Q psy4246          60 LGWEKSVSEDGKITFYNKDTHVKTYTDP   87 (328)
Q Consensus        60 ~gw~~~~~~~g~~yy~n~~~~~~~~~~P   87 (328)
                      ..|++..+++|++||+|..|++++|+.|
T Consensus         2 s~W~e~~~~~G~~YYyN~~T~eS~WekP   29 (29)
T d1o6wa1           2 SIWKEAKDASGRIYYYNTLTKKSTWEKP   29 (29)
T ss_dssp             CCEEEEECTTCCEEEEETTTTEEESSCC
T ss_pred             CccEEEECCCCCEEEeECCCCCEecCCC
Confidence            4699999999999999999999999988

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7e-07  Score=48.04  Aligned_cols=27  Identities=33%  Similarity=0.727  Sum_probs=26.0

Q ss_pred             CCeeeeeCCCcEEEEeccCcccccCCC
Q psy4246          61 GWEKSVSEDGKITFYNKDTHVKTYTDP   87 (328)
Q Consensus        61 gw~~~~~~~g~~yy~n~~~~~~~~~~P   87 (328)
                      .|++..+++|++||+|..|++++|+.|
T Consensus         2 ~W~e~~~~~G~~YYyN~~T~eS~We~P   28 (28)
T d1ywia1           2 MWTEHKSPDGRTYYYNTETKQSTWEKP   28 (28)
T ss_dssp             CEEEEEETTTEEEEEETTTTEEEESCC
T ss_pred             ccEEEECCCCCEEEeECCCCCEecCCC
Confidence            599999999999999999999999988

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=7e-07  Score=54.15  Aligned_cols=35  Identities=29%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             CCCCCCCeeeeeCCCcEEEEeccCcccccCCCccc
Q psy4246          56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        56 ~~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      .....+|+...+++|++||+|+.|+.++|+.|+..
T Consensus        10 ~l~~~~W~e~~~~~Gr~YYyN~~T~es~We~P~~~   44 (46)
T d1o6wa2          10 LLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE   44 (46)
T ss_dssp             HHHHHTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred             HhccCCCeEEECCCCCEEEEECCCCCEecCCCccc
Confidence            34467999999999999999999999999999753

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=6e-06  Score=66.60  Aligned_cols=84  Identities=19%  Similarity=0.276  Sum_probs=63.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHH---HHHHhhCCCCeEEEEEcccCCHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAI---SKILTEKPSAQCIAMELNLCRLKSVKKFA  193 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~---~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  193 (328)
                      +.++++|.|+|.|+ ||.|++++..|++.|. +++++.|+.+.++++.   +.+....   ......+|+.+.+.+....
T Consensus        13 ~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~   88 (182)
T d1vi2a1          13 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT---DCVVTVTDLADQQAFAEAL   88 (182)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS---SCEEEEEETTCHHHHHHHH
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc---CcceEeeecccccchhhhh
Confidence            45789999999999 7999999999999998 6889999877665543   3333332   3445678888877665544


Q ss_pred             HHHHHhcCCccEEEEcccc
Q psy4246         194 EEYQKKFRSLNILVLNAGV  212 (328)
Q Consensus       194 ~~~~~~~g~id~lvnnAg~  212 (328)
                      .       ..|++||+..+
T Consensus        89 ~-------~~diiIN~Tp~  100 (182)
T d1vi2a1          89 A-------SADILTNGTKV  100 (182)
T ss_dssp             H-------TCSEEEECSST
T ss_pred             c-------ccceeccccCC
Confidence            3       68999999765

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.93  E-value=1.3e-05  Score=64.50  Aligned_cols=79  Identities=18%  Similarity=0.200  Sum_probs=55.3

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +|+++||+||+||+|.+.++.....|++|+.+.+++++.+.+.    +.  +....   +|-.+.+..+.+.+..  ...
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~----~~--Ga~~v---i~~~~~~~~~~~~~~~--~~~   97 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK----QI--GFDAA---FNYKTVNSLEEALKKA--SPD   97 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HT--TCSEE---EETTSCSCHHHHHHHH--CTT
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH----hh--hhhhh---cccccccHHHHHHHHh--hcC
Confidence            5899999999999999999999999999999999877654332    22  33322   2334444333333322  224


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ++|+++++.|
T Consensus        98 Gvd~v~D~vG  107 (182)
T d1v3va2          98 GYDCYFDNVG  107 (182)
T ss_dssp             CEEEEEESSC
T ss_pred             CCceeEEecC
Confidence            6999999988

>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.5e-06  Score=48.21  Aligned_cols=28  Identities=32%  Similarity=0.787  Sum_probs=25.2

Q ss_pred             CCccccceecCCCcEEEEeCcCCccccC
Q psy4246          17 LPPGWEERVTADGCVYYVNHATEGTQWT   44 (328)
Q Consensus        17 lp~~w~~~~~~~g~~~~~~~~~~~t~w~   44 (328)
                      .-+-||+..+++.-.|||||.+++|+|.
T Consensus        11 V~~PWeRait~n~VPYYINH~~e~T~WD   38 (38)
T d1eg3a3          11 VQGPWERAISPNKVPYYINHETQTTCWD   38 (38)
T ss_dssp             CCTTEEEEECTTSCEEEEETTTTEEESS
T ss_pred             cccchhhhccccCCCeEeecccccccCC
Confidence            3456999999999999999999999995

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.89  E-value=2.9e-05  Score=61.51  Aligned_cols=76  Identities=14%  Similarity=0.230  Sum_probs=54.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++|.|+|.|| |.+|..+|+.|+++|++|++++|+.++++++.+.+      ........+..+.......+.       
T Consensus         1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~------~~~~~~~~~~~~~~~~~~~i~-------   66 (182)
T d1e5qa1           1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV------QHSTPISLDVNDDAALDAEVA-------   66 (182)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC------TTEEEEECCTTCHHHHHHHHT-------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc------cccccccccccchhhhHhhhh-------
Confidence            3688999887 99999999999999999999999998877654432      234445566666555544432       


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ..|.++....
T Consensus        67 ~~~~~i~~~~   76 (182)
T d1e5qa1          67 KHDLVISLIP   76 (182)
T ss_dssp             TSSEEEECSC
T ss_pred             ccceeEeecc
Confidence            4577765443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.6e-05  Score=63.45  Aligned_cols=79  Identities=13%  Similarity=0.195  Sum_probs=54.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+|++|...++.....|++|+++++++++.+.+ .++     +...   .+|.++.+..+++.+...  -.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~-~~~-----Ga~~---vi~~~~~~~~~~i~~~t~--~~   96 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQN-----GAHE---VFNHREVNYIDKIKKYVG--EK   96 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCSE---EEETTSTTHHHHHHHHHC--TT
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccc-ccc-----Cccc---ccccccccHHHHhhhhhc--cC
Confidence            688999999999999999998888999999999887665433 222     3322   236666554443333221  13


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      .+|+++.+.|
T Consensus        97 g~d~v~d~~g  106 (174)
T d1yb5a2          97 GIDIIIEMLA  106 (174)
T ss_dssp             CEEEEEESCH
T ss_pred             CceEEeeccc
Confidence            5999999876

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.87  E-value=3.8e-05  Score=60.29  Aligned_cols=84  Identities=19%  Similarity=0.281  Sum_probs=61.4

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +++++.++|.|+ |++|..+++.|...|+ +|.++.|+.++.+++..++     +.++    .   +.+++.+.+     
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~-----~~~~----~---~~~~~~~~l-----   82 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-----GGEA----V---RFDELVDHL-----   82 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-----TCEE----C---CGGGHHHHH-----
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh-----hccc----c---cchhHHHHh-----
Confidence            689999999998 9999999999999998 6999999988887777665     2221    1   223333333     


Q ss_pred             hcCCccEEEEccccCCCCCCCChhHHH
Q psy4246         199 KFRSLNILVLNAGVFGLGFSHTEDGFE  225 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~~~~~~~~~~~~  225 (328)
                        ...|++|++.+...+.  ++.+.+.
T Consensus        83 --~~~Divi~atss~~~i--i~~~~i~  105 (159)
T d1gpja2          83 --ARSDVVVSATAAPHPV--IHVDDVR  105 (159)
T ss_dssp             --HTCSEEEECCSSSSCC--BCHHHHH
T ss_pred             --ccCCEEEEecCCCCcc--ccHhhhH
Confidence              3689999998864333  3445444

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.76  E-value=3.4e-05  Score=62.34  Aligned_cols=87  Identities=10%  Similarity=0.101  Sum_probs=56.0

Q ss_pred             CCceEE-EcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH-h
Q psy4246         122 SNYNAI-VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK-K  199 (328)
Q Consensus       122 ~~k~~l-ITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~-~  199 (328)
                      .|+.++ ++||+||+|.+.++..-..|++||++.|+.+..++..+.+++.  |.... +.-|-.+...+...+.++.+ .
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~l--Gad~v-i~~~~~~~~~~~~~v~~~~~~~  104 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL--GATQV-ITEDQNNSREFGPTIKEWIKQS  104 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH--TCSEE-EEHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhc--cccEE-EeccccchhHHHHHHHHHHhhc
Confidence            355445 5799999999998888788999999988877666666555554  33322 22222222233334444433 3


Q ss_pred             cCCccEEEEccc
Q psy4246         200 FRSLNILVLNAG  211 (328)
Q Consensus       200 ~g~id~lvnnAg  211 (328)
                      .+++|+++++.|
T Consensus       105 g~~vdvv~D~vg  116 (189)
T d1gu7a2         105 GGEAKLALNCVG  116 (189)
T ss_dssp             TCCEEEEEESSC
T ss_pred             cCCceEEEECCC
Confidence            457999999877

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=3.3e-05  Score=61.66  Aligned_cols=80  Identities=18%  Similarity=0.200  Sum_probs=56.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+||+|...++.....|++|+++++++++.+.+ .++     |..   ..+|.++++-.+++.+ +- .-.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~-~~l-----Ga~---~vi~~~~~d~~~~v~~-~t-~g~   96 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA-LKA-----GAW---QVINYREEDLVERLKE-IT-GGK   96 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHH-----TCS---EEEETTTSCHHHHHHH-HT-TTC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH-Hhc-----CCe---EEEECCCCCHHHHHHH-Hh-CCC
Confidence            588999999999999999999888999999999998876543 333     333   2246666544333322 11 224


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      .+|+++.+.|-
T Consensus        97 g~d~v~d~~g~  107 (179)
T d1qora2          97 KVRVVYDSVGR  107 (179)
T ss_dssp             CEEEEEECSCG
T ss_pred             CeEEEEeCccH
Confidence            68999998874

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1.3e-05  Score=68.87  Aligned_cols=130  Identities=13%  Similarity=0.058  Sum_probs=75.4

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH--hcCC
Q psy4246         126 AIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK--KFRS  202 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~--~~g~  202 (328)
                      ||||||+|-||.++++.|+++|+ .|+++++-..... . ..+...        ..+|..+.   ..+.+.+..  .+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~-~-~~~~~~--------~~~~~~~~---~~~~~~~~~~~~~~~   68 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-F-VNLVDL--------NIADYMDK---EDFLIQIMAGEEFGD   68 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG-G-HHHHTS--------CCSEEEEH---HHHHHHHHTTCCCSS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcch-h-hccccc--------chhhhccc---hHHHHHHhhhhcccc
Confidence            89999999999999999999996 6877763222110 0 011111        11232222   233333332  3467


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc---cccce-----------ecccccchhhhccC
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKLFA-----------RQQGAATSIYCATS  268 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---ss~~~-----------~~~~~~~~~y~ask  268 (328)
                      ++++++.|+.....    ........+.|+.+...+..++...-.+.   ++...           .........|+.+|
T Consensus        69 ~~~i~~~aa~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~~K  144 (307)
T d1eq2a_          69 VEAIFHEGACSSTT----EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSK  144 (307)
T ss_dssp             CCEEEECCSCCCTT----CCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHH
T ss_pred             hhhhhhhccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999998864322    12335567788888888877776543332   11110           11123456788888


Q ss_pred             cccc
Q psy4246         269 LDLS  272 (328)
Q Consensus       269 ~al~  272 (328)
                      .+.+
T Consensus       145 ~~~e  148 (307)
T d1eq2a_         145 FLFD  148 (307)
T ss_dssp             HHHH
T ss_pred             chhh
Confidence            7665

>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 1, APBB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.8e-05  Score=42.80  Aligned_cols=31  Identities=26%  Similarity=0.622  Sum_probs=28.6

Q ss_pred             CCCCCCeeeeeCCCcEEEEeccCcccccCCCc
Q psy4246          57 DLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR   88 (328)
Q Consensus        57 ~lp~gw~~~~~~~g~~yy~n~~~~~~~~~~P~   88 (328)
                      +||+||++..+..| .||-...+..+||+.|.
T Consensus         2 dLPpGW~ki~D~~G-~YYWHiptGttQwe~P~   32 (33)
T d2ho2a1           2 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG   32 (33)
T ss_dssp             CSCTTEEEEECSSC-EEEEETTTTEEESSCCC
T ss_pred             CCCCcceeeecCCC-ceEEEecCCcccccCCC
Confidence            69999999999988 99999999999999884

>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: WW domain-binding protein 4, WBP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=6.4e-06  Score=47.73  Aligned_cols=30  Identities=13%  Similarity=0.428  Sum_probs=27.8

Q ss_pred             CCeeeeeCCCcEEEEeccCcccccCCCccc
Q psy4246          61 GWEKSVSEDGKITFYNKDTHVKTYTDPRIV   90 (328)
Q Consensus        61 gw~~~~~~~g~~yy~n~~~~~~~~~~P~~~   90 (328)
                      .|++..+++|++||+|..|+.++|+.|.-.
T Consensus         2 ~W~e~~~~~G~~YYyN~~T~eS~We~P~~~   31 (38)
T d2dk1a1           2 RWVEGITSEGYHYYYDLISGASQWEKPEGF   31 (38)
T ss_dssp             CEEECCCSTTCCCEEESSSCCEESSCCTTC
T ss_pred             CCeEEECCCCCEEEEECCCCCEecCCChhH
Confidence            599999999999999999999999999754

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=3.5e-05  Score=61.62  Aligned_cols=77  Identities=12%  Similarity=0.168  Sum_probs=54.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc-
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF-  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~-  200 (328)
                      +|+++||+||+|++|..+++.+...|++|+++.++.++.+.    +++.  +....   .|..+++-    .+++.+.. 
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~----l~~~--Ga~~v---i~~~~~~~----~~~v~~~t~   91 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM----LSRL--GVEYV---GDSRSVDF----ADEILELTD   91 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH----HHTT--CCSEE---EETTCSTH----HHHHHHHTT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccc----cccc--ccccc---ccCCccCH----HHHHHHHhC
Confidence            47899999999999999999888899999999988766433    2222  33322   34444433    33344432 


Q ss_pred             -CCccEEEEccc
Q psy4246         201 -RSLNILVLNAG  211 (328)
Q Consensus       201 -g~id~lvnnAg  211 (328)
                       .++|+++.+.|
T Consensus        92 ~~g~d~v~d~~g  103 (183)
T d1pqwa_          92 GYGVDVVLNSLA  103 (183)
T ss_dssp             TCCEEEEEECCC
T ss_pred             CCCEEEEEeccc
Confidence             36999999988

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.63  E-value=7.4e-05  Score=58.97  Aligned_cols=82  Identities=16%  Similarity=0.162  Sum_probs=56.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc-
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF-  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~-  200 (328)
                      .|.+++|+| +|+||...++.+...|++|+++++++++++.+. ++     +.... +..|-. .+......+.+.+.. 
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~-~~-----ga~~~-~~~~~~-~~~~~~~~~~~~~~~g   96 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NC-----GADVT-LVVDPA-KEEESSIIERIRSAIG   96 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT-----TCSEE-EECCTT-TSCHHHHHHHHHHHSS
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHH-Hc-----CCcEE-Eecccc-ccccchhhhhhhcccc
Confidence            577899997 589999999988899999999999988765432 22     32322 222322 223344555565554 


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +.+|++|.++|.
T Consensus        97 ~g~D~vid~~g~  108 (170)
T d1e3ja2          97 DLPNVTIDCSGN  108 (170)
T ss_dssp             SCCSEEEECSCC
T ss_pred             cCCceeeecCCC
Confidence            469999999985

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=7e-05  Score=59.34  Aligned_cols=77  Identities=13%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +.+++||.|||.|+ ||-+++++..|.+.|++|.++.|+.++.+++.+.+....   .+..+  +..+.           
T Consensus        13 ~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~---~~~~~--~~~~~-----------   75 (170)
T d1nyta1          13 SFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG---SIQAL--SMDEL-----------   75 (170)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS---SEEEC--CSGGG-----------
T ss_pred             CCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc---ccccc--ccccc-----------
Confidence            45789999999998 889999999999999999999999999888777665432   23322  22211           


Q ss_pred             HhcCCccEEEEcccc
Q psy4246         198 KKFRSLNILVLNAGV  212 (328)
Q Consensus       198 ~~~g~id~lvnnAg~  212 (328)
                       .....|++||+..+
T Consensus        76 -~~~~~dliIN~Tp~   89 (170)
T d1nyta1          76 -EGHEFDLIINATSS   89 (170)
T ss_dssp             -TTCCCSEEEECCSC
T ss_pred             -cccccceeeccccc
Confidence             12468999999754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.47  E-value=0.00011  Score=55.61  Aligned_cols=71  Identities=17%  Similarity=0.338  Sum_probs=54.8

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .++|.|+ |-+|+.+++.|.++|+.|++++.+++..+.+..++       .+.++..|.++++.++++-      ....|
T Consensus         2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~------i~~a~   67 (132)
T d1lssa_           2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAG------IEDAD   67 (132)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTT------TTTCS
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcC------hhhhh
Confidence            5889998 99999999999999999999999988776654332       3567889999988766541      13567


Q ss_pred             EEEEc
Q psy4246         205 ILVLN  209 (328)
Q Consensus       205 ~lvnn  209 (328)
                      .++..
T Consensus        68 ~vv~~   72 (132)
T d1lssa_          68 MYIAV   72 (132)
T ss_dssp             EEEEC
T ss_pred             hhccc
Confidence            77653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.46  E-value=0.00013  Score=57.74  Aligned_cols=74  Identities=18%  Similarity=0.256  Sum_probs=51.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|+++||+||+|++|...++.+...|++|+.+++++++.+.+. ++     |....   .|..+.      .+++ ....
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~-~l-----Ga~~~---i~~~~~------~~~~-~~~~   90 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-AL-----GAEEA---ATYAEV------PERA-KAWG   90 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HT-----TCSEE---EEGGGH------HHHH-HHTT
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccccccccccccc-cc-----cccee---eehhhh------hhhh-hccc
Confidence            6889999999999999999988889999999999877655432 22     33222   233221      1222 2335


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      ++|+++++.|
T Consensus        91 g~D~v~d~~G  100 (171)
T d1iz0a2          91 GLDLVLEVRG  100 (171)
T ss_dssp             SEEEEEECSC
T ss_pred             cccccccccc
Confidence            7999999776

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.44  E-value=0.00022  Score=56.47  Aligned_cols=78  Identities=13%  Similarity=0.170  Sum_probs=59.8

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +.++++|.++|.|+ ||.+++++..|.+.+.+|.++.|+.++++...+.+...   ..+..+..|-.             
T Consensus        13 ~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~-------------   75 (171)
T d1p77a1          13 NWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSI-------------   75 (171)
T ss_dssp             TCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGC-------------
T ss_pred             CCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc---cccchhhhccc-------------
Confidence            34689999999987 78899999999998889999999999988888877543   24444444421             


Q ss_pred             HhcCCccEEEEccccC
Q psy4246         198 KKFRSLNILVLNAGVF  213 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~  213 (328)
                       .....|++||+..+.
T Consensus        76 -~~~~~diiIN~tp~g   90 (171)
T d1p77a1          76 -PLQTYDLVINATSAG   90 (171)
T ss_dssp             -CCSCCSEEEECCCC-
T ss_pred             -cccccceeeeccccc
Confidence             124789999998753

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.44  E-value=5.9e-05  Score=60.19  Aligned_cols=79  Identities=16%  Similarity=0.108  Sum_probs=51.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      -+|+++||+||+||+|....+.....|++|+.+++++++.+.+. ++     +.... +  |-++.  ..+.+..+  .-
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~-~l-----Ga~~v-i--~~~~~--~~~~~~~~--~~   96 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VL-----GAKEV-L--AREDV--MAERIRPL--DK   96 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HT-----TCSEE-E--ECC-----------C--CS
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH-hc-----cccee-e--ecchh--HHHHHHHh--hc
Confidence            35889999999999999999888889999999999888755432 22     33322 2  22211  11212111  22


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++|.+.|-
T Consensus        97 ~gvD~vid~vgg  108 (176)
T d1xa0a2          97 QRWAAAVDPVGG  108 (176)
T ss_dssp             CCEEEEEECSTT
T ss_pred             cCcCEEEEcCCc
Confidence            579999999884

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=9.4e-05  Score=50.34  Aligned_cols=42  Identities=21%  Similarity=0.261  Sum_probs=36.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      ++..+||+||+||+|....+.+...|++|+.+.+++++.+-+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            578899999999999999998888999999999988776543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=0.00015  Score=57.92  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=54.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.++||+|+ |+||...++.+...|+ +|+++++++++++.+ +++     |... ++  |..+. +..+..+++.+..
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~~-vi--~~~~~-~~~~~~~~i~~~~   96 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEI-----GADL-TL--NRRET-SVEERRKAIMDIT   96 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHT-----TCSE-EE--ETTTS-CHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-Cccchhheeccccccccccccccccccccccc-ccc-----cceE-EE--ecccc-chHHHHHHHHHhh
Confidence            6899999997 8999999999989998 799999998876533 333     3222 22  33322 2223334444433


Q ss_pred             --CCccEEEEcccc
Q psy4246         201 --RSLNILVLNAGV  212 (328)
Q Consensus       201 --g~id~lvnnAg~  212 (328)
                        ..+|++|.+.|.
T Consensus        97 ~~~g~Dvvid~vG~  110 (182)
T d1vj0a2          97 HGRGADFILEATGD  110 (182)
T ss_dssp             TTSCEEEEEECSSC
T ss_pred             CCCCceEEeecCCc
Confidence              259999999986

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=5.4e-05  Score=62.79  Aligned_cols=79  Identities=19%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             CCCCCceEEEcCCC----------------CCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcc
Q psy4246         119 RDLSNYNAIVTGAN----------------TGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELN  182 (328)
Q Consensus       119 ~~l~~k~~lITGas----------------~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D  182 (328)
                      .+|+|+.||||+|.                |-.|.++|+.+..+||+|.++......           .+...+..+.  
T Consensus         2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~-----------~~p~~~~~~~--   68 (223)
T d1u7za_           2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL-----------PTPPFVKRVD--   68 (223)
T ss_dssp             CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC-----------CCCTTEEEEE--
T ss_pred             cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccccc-----------Ccccccccce--
Confidence            47899999999874                458999999999999999988654321           0112333333  


Q ss_pred             cCCHHHHHHHHHHHHHhcCCccEEEEccccC
Q psy4246         183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       183 ls~~~~v~~~~~~~~~~~g~id~lvnnAg~~  213 (328)
                      +.+.+++   .+.+.+.+...|++|.+|++.
T Consensus        69 ~~t~~~m---~~~~~~~~~~~D~~i~aAAvs   96 (223)
T d1u7za_          69 VMTALEM---EAAVNASVQQQNIFIGCAAVA   96 (223)
T ss_dssp             CCSHHHH---HHHHHHHGGGCSEEEECCBCC
T ss_pred             ehhhHHH---HHHHHhhhccceeEeeeechh
Confidence            3344444   444444456789999999984

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.00024  Score=56.94  Aligned_cols=79  Identities=22%  Similarity=0.260  Sum_probs=51.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEE-eeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVIL-ACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~-~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .+++|||+||+||+|...++..-..|+++++ ++.+.++...+..++     +..   ...|..+++ +.+.+.++..  
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~-----gad---~vi~~~~~~-~~~~~~~~~~--   98 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL-----GFD---AAVNYKTGN-VAEQLREACP--   98 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS-----CCS---EEEETTSSC-HHHHHHHHCT--
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc-----cce---EEeeccchh-HHHHHHHHhc--
Confidence            3478999999999999999888779997554 566666555544443     222   223444433 3333333322  


Q ss_pred             CCccEEEEccc
Q psy4246         201 RSLNILVLNAG  211 (328)
Q Consensus       201 g~id~lvnnAg  211 (328)
                      ..+|+++.+.|
T Consensus        99 ~GvDvv~D~vG  109 (187)
T d1vj1a2          99 GGVDVYFDNVG  109 (187)
T ss_dssp             TCEEEEEESSC
T ss_pred             cCceEEEecCC
Confidence            36999999887

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00099  Score=52.29  Aligned_cols=80  Identities=18%  Similarity=0.234  Sum_probs=54.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.+++|.|+ |+||...+..+...|+ +|+++++++++++.+ +++     |... .+..+-.+....   .+.+...+
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a-~~~-----Ga~~-~~~~~~~~~~~~---~~~~~~~~   94 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEI-----GADL-VLQISKESPQEI---ARKVEGQL   94 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT-----TCSE-EEECSSCCHHHH---HHHHHHHH
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHH-HHh-----CCcc-cccccccccccc---cccccccC
Confidence            5778999987 9999999999999999 799999998876643 233     3332 233333344433   33333333


Q ss_pred             -CCccEEEEcccc
Q psy4246         201 -RSLNILVLNAGV  212 (328)
Q Consensus       201 -g~id~lvnnAg~  212 (328)
                       ..+|++|.+.|.
T Consensus        95 g~g~Dvvid~~G~  107 (171)
T d1pl8a2          95 GCKPEVTIECTGA  107 (171)
T ss_dssp             TSCCSEEEECSCC
T ss_pred             CCCceEEEeccCC
Confidence             469999999985

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.17  E-value=0.00041  Score=54.49  Aligned_cols=80  Identities=11%  Similarity=0.106  Sum_probs=54.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.+++|.|++|++|..++..+...|+ +|+++++++++.+.+. ++     |... .  .|.++.+..+++.+..  .-
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~-----Ga~~-~--i~~~~~~~~~~~~~~~--~~   95 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RA-----GADY-V--INASMQDPLAEIRRIT--ES   95 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HH-----TCSE-E--EETTTSCHHHHHHHHT--TT
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-Hc-----CCce-e--eccCCcCHHHHHHHHh--hc
Confidence            578999999999999999999998895 8889999887655432 33     3332 2  2344444444433322  12


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +.+|++|.++|.
T Consensus        96 ~~~d~vid~~g~  107 (170)
T d1jvba2          96 KGVDAVIDLNNS  107 (170)
T ss_dssp             SCEEEEEESCCC
T ss_pred             ccchhhhccccc
Confidence            459999999985

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.02  E-value=0.00043  Score=54.83  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=52.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.+++|.|+ ||||...++.+...|+ +|+++++++++++.+ +++     |..   ..+|..+.+..+    ++.+..
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a-~~l-----Ga~---~~i~~~~~~~~~----~v~~~t   92 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA-KFY-----GAT---DILNYKNGHIED----QVMKLT   92 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH-HHH-----TCS---EEECGGGSCHHH----HHHHHT
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHH-Hhh-----Ccc---ccccccchhHHH----HHHHHh
Confidence            5788999986 8999999998888998 699999998775543 333     322   123444433322    333332


Q ss_pred             --CCccEEEEcccc
Q psy4246         201 --RSLNILVLNAGV  212 (328)
Q Consensus       201 --g~id~lvnnAg~  212 (328)
                        ..+|++|.++|.
T Consensus        93 ~g~G~D~vid~~g~  106 (174)
T d1jqba2          93 NGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTSCEEEEEECSSC
T ss_pred             hccCcceEEEccCC
Confidence              349999999995

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.01  E-value=0.00039  Score=52.32  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=52.9

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |.++|.|+ |-+|..+|+.|.++|..|++++.+++..+++.    ..  +  ...+.+|.++++.++++-      ..+.
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~----~~--~--~~~~~gd~~~~~~l~~a~------i~~a   65 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY--A--THAVIANATEENELLSLG------IRNF   65 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT----TT--C--SEEEECCTTCTTHHHHHT------GGGC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH----Hh--C--CcceeeecccchhhhccC------Cccc
Confidence            45777777 78999999999999999999999987766542    22  2  345678999988765541      1246


Q ss_pred             cEEEEccc
Q psy4246         204 NILVLNAG  211 (328)
Q Consensus       204 d~lvnnAg  211 (328)
                      |.+|...+
T Consensus        66 ~~vi~~~~   73 (134)
T d2hmva1          66 EYVIVAIG   73 (134)
T ss_dssp             SEEEECCC
T ss_pred             cEEEEEcC
Confidence            77765544

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.90  E-value=0.0014  Score=51.78  Aligned_cols=79  Identities=16%  Similarity=0.135  Sum_probs=54.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHH-HHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKS-VKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~-v~~~~~~~~~~  199 (328)
                      .|.+++|.|+ ||+|...+..+...|+ +|+++++++++++-+ .++     |....+   |..+.+. .+.+.+..  .
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A-k~~-----GA~~~i---n~~~~~~~~~~~~~~~--~   96 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA-MAV-----GATECI---SPKDSTKPISEVLSEM--T   96 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHH-----TCSEEE---CGGGCSSCHHHHHHHH--H
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHH-Hhc-----CCcEEE---CccccchHHHHHHHHh--c
Confidence            5889999986 8999999999999995 899999999987643 333     333222   3333222 22222222  2


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                      .+++|++|.+.|.
T Consensus        97 g~G~d~vi~~~g~  109 (176)
T d1d1ta2          97 GNNVGYTFEVIGH  109 (176)
T ss_dssp             TSCCCEEEECSCC
T ss_pred             cccceEEEEeCCc
Confidence            3579999999885

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00089  Score=52.42  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=52.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.+|+|.|+ ||||...++.+...|+++++++++.++.+ ..+++     +...   .+|..+.+...       ...+
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~-~a~~l-----Gad~---~i~~~~~~~~~-------~~~~   92 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKRE-AAKAL-----GADE---VVNSRNADEMA-------AHLK   92 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHH-----TCSE---EEETTCHHHHH-------TTTT
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHH-HHhcc-----CCcE---EEECchhhHHH-------HhcC
Confidence            5889999986 89999999888889999999999888764 33444     3222   23555544321       2235


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      .+|++|.+.|.
T Consensus        93 ~~D~vid~~g~  103 (168)
T d1uufa2          93 SFDFILNTVAA  103 (168)
T ss_dssp             CEEEEEECCSS
T ss_pred             CCceeeeeeec
Confidence            79999999985

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.88  E-value=0.00096  Score=52.61  Aligned_cols=78  Identities=14%  Similarity=0.130  Sum_probs=50.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeE-EEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRV-ILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~V-i~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.+++|.|+ |+||...+..+...|+++ +++++++++++.+ +++     +.. .+  .|..+.+. .+.+.++.  .
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a-~~~-----Ga~-~~--i~~~~~~~-~~~i~~~t--~   94 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQL-----GAT-HV--INSKTQDP-VAAIKEIT--D   94 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHH-----TCS-EE--EETTTSCH-HHHHHHHT--T
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHH-HHc-----CCe-EE--EeCCCcCH-HHHHHHHc--C
Confidence            5888999987 899999998888889865 5567777665543 333     322 22  34444332 22232221  2


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|++|.+.|.
T Consensus        95 gg~D~vid~~G~  106 (174)
T d1f8fa2          95 GGVNFALESTGS  106 (174)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCcEEEEcCCc
Confidence            579999999985

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.87  E-value=0.0055  Score=46.77  Aligned_cols=80  Identities=18%  Similarity=0.111  Sum_probs=56.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCC--CCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKP--SAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      -.++.+.|+|+ |.+|..+|..|+..|.  +|+++|++++.++....++.....  ...+.....|..            
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~------------   70 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD------------   70 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG------------
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHH------------
Confidence            35667888897 8999999999999884  799999999887766666654321  223333344432            


Q ss_pred             HHhcCCccEEEEccccCCC
Q psy4246         197 QKKFRSLNILVLNAGVFGL  215 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~~  215 (328)
                        ....-|++|..||....
T Consensus        71 --~l~daDvvvitag~~~~   87 (148)
T d1ldna1          71 --DCRDADLVVICAGANQK   87 (148)
T ss_dssp             --GTTTCSEEEECCSCCCC
T ss_pred             --HhccceeEEEecccccc
Confidence              12367999999998643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.0014  Score=51.26  Aligned_cols=76  Identities=21%  Similarity=0.250  Sum_probs=51.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.+++|.|+ |++|...++.+...|++|+++++++++++.+ +++     |.... +  |..+....   .   .+..+
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a-~~l-----Ga~~~-i--~~~~~~~~---~---~~~~~   90 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDA-MKM-----GADHY-I--ATLEEGDW---G---EKYFD   90 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHH-HHH-----TCSEE-E--EGGGTSCH---H---HHSCS
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHh-hcc-----CCcEE-e--eccchHHH---H---Hhhhc
Confidence            5889999987 8999998887778899999999998877643 333     33322 2  22221111   1   22345


Q ss_pred             CccEEEEccccC
Q psy4246         202 SLNILVLNAGVF  213 (328)
Q Consensus       202 ~id~lvnnAg~~  213 (328)
                      .+|++|.+.|..
T Consensus        91 ~~d~vi~~~~~~  102 (168)
T d1piwa2          91 TFDLIVVCASSL  102 (168)
T ss_dssp             CEEEEEECCSCS
T ss_pred             ccceEEEEecCC
Confidence            799999988764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.81  E-value=0.001  Score=52.49  Aligned_cols=79  Identities=19%  Similarity=0.189  Sum_probs=53.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC-HHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR-LKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~~  199 (328)
                      .|.+|+|.|+ +|+|...+..+...|+ +|+++++++++.+.+ .++     +....   .|..+ .+.+.+..+..  .
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a-~~~-----Ga~~~---i~~~~~~~~~~~~~~~~--~   95 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEV-----GATEC---VNPQDYKKPIQEVLTEM--S   95 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT-----TCSEE---ECGGGCSSCHHHHHHHH--T
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHH-HHh-----CCeeE---EecCCchhHHHHHHHHH--h
Confidence            6889999999 6899999999999985 888999998876543 222     22222   22222 22344444433  2


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                      .+.+|++|.+.|.
T Consensus        96 ~~G~D~vid~~G~  108 (176)
T d2jhfa2          96 NGGVDFSFEVIGR  108 (176)
T ss_dssp             TSCBSEEEECSCC
T ss_pred             cCCCCEEEecCCc
Confidence            2579999999986

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00062  Score=54.05  Aligned_cols=42  Identities=21%  Similarity=0.261  Sum_probs=36.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      .++.+||+||+||+|...++.....|++|+.+.+++++.+.+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~   72 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence            456899999999999999988888999999999998886543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.75  E-value=0.00042  Score=54.55  Aligned_cols=42  Identities=24%  Similarity=0.296  Sum_probs=36.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      .+.+|||+||+||+|...++.....|++|+.+.+++++.+.+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~   64 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL   64 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH
Confidence            466899999999999999987778899999999998876554

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.74  E-value=0.0027  Score=49.32  Aligned_cols=76  Identities=16%  Similarity=0.129  Sum_probs=50.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.+++|.|+ |+||...+..+...|++|+++++++++++.+. ++     +... +  .|.++.+..+.+.    +..+
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~-~~-----Ga~~-~--i~~~~~~~~~~~~----~~~~   92 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELAR-KL-----GASL-T--VNARQEDPVEAIQ----RDIG   92 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT-----TCSE-E--EETTTSCHHHHHH----HHHS
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhh-cc-----Cccc-c--ccccchhHHHHHH----Hhhc
Confidence            5788999886 99999999888889999999999988765432 22     3222 2  3444444433332    3334


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      +.|..|-+++
T Consensus        93 g~~~~i~~~~  102 (166)
T d1llua2          93 GAHGVLVTAV  102 (166)
T ss_dssp             SEEEEEECCS
T ss_pred             CCcccccccc
Confidence            5666665555

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.68  E-value=0.0012  Score=48.19  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=34.4

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      .+++||.+||.|+ |.+|..-++.|++.|++|++++....
T Consensus         8 l~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1           8 CQLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             ECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             EEeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            3789999999999 56999999999999999999886543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.62  E-value=0.00032  Score=56.88  Aligned_cols=43  Identities=21%  Similarity=0.292  Sum_probs=37.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      +|+||+++|-| .|.+|..+|+.|.+.|++|++.+.+.+.+...
T Consensus        24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            69999999998 57799999999999999999999987765543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00066  Score=47.74  Aligned_cols=38  Identities=13%  Similarity=0.177  Sum_probs=33.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      +++||+++|.|. |.-|.++|+.|+++|++|++.+.+..
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            689999999998 66799999999999999999997654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.58  E-value=0.014  Score=45.66  Aligned_cols=126  Identities=12%  Similarity=0.009  Sum_probs=68.1

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCC---C----eEEEeeCCh--hHHHHHHHHHHhhCC-CCeEEEEEcccCCHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHG---C----RVILACRSL--DKANDAISKILTEKP-SAQCIAMELNLCRLKSVKKFA  193 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~G---a----~Vi~~~r~~--~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~~~  193 (328)
                      -.|.||||+|.||..++..|+...   .    .+.+.+.+.  +.++....++..... ..+-..+..   +.       
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~---~~-------   94 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGI---DP-------   94 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEES---CH-------
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccc---cc-------
Confidence            369999999999999999999753   2    345555543  344555545543321 111111221   11       


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc----cccceecccccchhhhccCc
Q psy4246         194 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG----AKLFARQQGAATSIYCATSL  269 (328)
Q Consensus       194 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----ss~~~~~~~~~~~~y~ask~  269 (328)
                         .+.+...|++|..||..... ..+.   ...+..|..    +.+.+.+.+.+.    ..+...........|-+.|.
T Consensus        95 ---~~~~~~aDvVvi~ag~~rkp-g~tR---~Dll~~N~~----I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia~k~  163 (175)
T d7mdha1          95 ---YEVFEDVDWALLIGAKPRGP-GMER---AALLDINGQ----IFADQGKALNAVASKNVKVLVVGNPCNTNALICLKN  163 (175)
T ss_dssp             ---HHHTTTCSEEEECCCCCCCT-TCCH---HHHHHHHHH----HHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHT
T ss_pred             ---hhhccCCceEEEeeccCCCC-CCcH---HHHHHHHHH----HHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHHHH
Confidence               12345799999999985322 2233   345556654    444555555443    22322222334555655554


Q ss_pred             c
Q psy4246         270 D  270 (328)
Q Consensus       270 a  270 (328)
                      +
T Consensus       164 a  164 (175)
T d7mdha1         164 A  164 (175)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00082  Score=37.67  Aligned_cols=28  Identities=18%  Similarity=0.427  Sum_probs=25.7

Q ss_pred             CCCCCeeeeeCCCcEEEEeccCcccccC
Q psy4246          58 LPLGWEKSVSEDGKITFYNKDTHVKTYT   85 (328)
Q Consensus        58 lp~gw~~~~~~~g~~yy~n~~~~~~~~~   85 (328)
                      .-.+|++.++.+.-.||+||.++.++|+
T Consensus        11 V~~PWeRait~n~VPYYINH~~e~T~WD   38 (38)
T d1eg3a3          11 VQGPWERAISPNKVPYYINHETQTTCWD   38 (38)
T ss_dssp             CCTTEEEEECTTSCEEEEETTTTEEESS
T ss_pred             cccchhhhccccCCCeEeecccccccCC
Confidence            4678999999999999999999999995

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.0029  Score=48.37  Aligned_cols=83  Identities=14%  Similarity=0.128  Sum_probs=54.9

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      +..-|++.|.||.|-||..+|+.|.+.|++|.+.+|+.....+..   ..   +..+.....+   ...+...+.++...
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~---~~---~~~~v~~~~~---~~~~~~v~~~~~~~   76 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI---LA---NADVVIVSVP---INLTLETIERLKPY   76 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH---HT---TCSEEEECSC---GGGHHHHHHHHGGG
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh---hh---hccccccccc---hhhheeeeeccccc
Confidence            345578999999999999999999999999999999876543322   11   3344444443   44566666666554


Q ss_pred             cCCccEEEEccc
Q psy4246         200 FRSLNILVLNAG  211 (328)
Q Consensus       200 ~g~id~lvnnAg  211 (328)
                      ...=.+++..+.
T Consensus        77 ~~~~~iiiD~~S   88 (152)
T d2pv7a2          77 LTENMLLADLTS   88 (152)
T ss_dssp             CCTTSEEEECCS
T ss_pred             ccCCceEEEecc
Confidence            333234444433

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.48  E-value=0.0022  Score=50.27  Aligned_cols=79  Identities=18%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC-HHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR-LKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~~  199 (328)
                      .|.+++|.|+ +|+|...++.+...|+ .|+++++++++.+ ..+++     |... +  .|..+ .+.+.+.+....  
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~-~ak~l-----Ga~~-~--i~~~~~~~~~~~~~~~~~--   95 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFA-RAKEF-----GATE-C--INPQDFSKPIQEVLIEMT--   95 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHH-HHHHH-----TCSE-E--ECGGGCSSCHHHHHHHHT--
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHH-HHHHh-----CCcE-E--EeCCchhhHHHHHHHHHc--
Confidence            6889999998 5999999999999997 5666777777654 34444     3222 1  23322 233444444332  


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                      .+.+|++|.+.|.
T Consensus        96 ~~g~D~vid~~G~  108 (176)
T d2fzwa2          96 DGGVDYSFECIGN  108 (176)
T ss_dssp             TSCBSEEEECSCC
T ss_pred             CCCCcEeeecCCC
Confidence            3579999999984

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.47  E-value=0.0058  Score=47.29  Aligned_cols=83  Identities=20%  Similarity=0.158  Sum_probs=54.7

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHH--------hhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL--------TEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~--------~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +.|.|. |-+|.++|+.|.+.|++|++.+|+.+.++.+.+.-.        +......+.++.+   ..+.++++++++.
T Consensus         3 I~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~~l~   78 (165)
T d2f1ka2           3 IGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLEKLI   78 (165)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHHHHG
T ss_pred             EEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhhhhh
Confidence            556665 899999999999999999999999877665443210        1111234444433   3567788888886


Q ss_pred             HhcCCccEEEEcccc
Q psy4246         198 KKFRSLNILVLNAGV  212 (328)
Q Consensus       198 ~~~g~id~lvnnAg~  212 (328)
                      ....+=.++++.++.
T Consensus        79 ~~l~~~~iv~~~~s~   93 (165)
T d2f1ka2          79 PHLSPTAIVTDVASV   93 (165)
T ss_dssp             GGSCTTCEEEECCSC
T ss_pred             hhcccccceeecccc
Confidence            655555566655443

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.47  E-value=0.0067  Score=46.19  Aligned_cols=75  Identities=11%  Similarity=0.110  Sum_probs=52.6

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhC--CCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEK--PSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      |.+.|+|+ |.+|..+|..|+.+|.  +++++++++++++....++....  ..........|.   +.           
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~---~~-----------   66 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW---AA-----------   66 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG---GG-----------
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH---HH-----------
Confidence            56778895 8999999999999883  79999999988776666665432  122333333332   21           


Q ss_pred             cCCccEEEEccccC
Q psy4246         200 FRSLNILVLNAGVF  213 (328)
Q Consensus       200 ~g~id~lvnnAg~~  213 (328)
                      ...-|++|..||..
T Consensus        67 l~~adiVVitaG~~   80 (146)
T d1hyha1          67 LADADVVISTLGNI   80 (146)
T ss_dssp             GTTCSEEEECCSCG
T ss_pred             hccccEEEEecccc
Confidence            13679999999975

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.004  Score=47.64  Aligned_cols=76  Identities=13%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      .++|.|. +-+|..+++.|.++|.+|++++.+++.......+...    ..+.++..|.++++.++++-      ..+.|
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~------i~~a~   73 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAG------IDRCR   73 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHT------TTTCS
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhc------cccCC
Confidence            4778887 6999999999999999999999988766555555442    35778999999987665542      13567


Q ss_pred             EEEEccc
Q psy4246         205 ILVLNAG  211 (328)
Q Consensus       205 ~lvnnAg  211 (328)
                      .+|...+
T Consensus        74 ~vi~~~~   80 (153)
T d1id1a_          74 AILALSD   80 (153)
T ss_dssp             EEEECSS
T ss_pred             EEEEccc
Confidence            7776543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.40  E-value=0.012  Score=44.75  Aligned_cols=76  Identities=13%  Similarity=0.187  Sum_probs=52.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhC-CCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEK-PSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+.+.|.|+ |.+|..+|..|+.+|  .+|+++|++++.++....++.... ..........|..              .
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~--------------~   69 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS--------------D   69 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG--------------G
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH--------------H
Confidence            446777896 889999999999998  489999999887766555564321 1222333444431              1


Q ss_pred             cCCccEEEEccccC
Q psy4246         200 FRSLNILVLNAGVF  213 (328)
Q Consensus       200 ~g~id~lvnnAg~~  213 (328)
                      ...-|++|..||..
T Consensus        70 ~~~adivvitag~~   83 (146)
T d1ez4a1          70 CKDADLVVITAGAP   83 (146)
T ss_dssp             GTTCSEEEECCCC-
T ss_pred             hccccEEEEecccc
Confidence            24689999999975

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.38  E-value=0.002  Score=50.68  Aligned_cols=80  Identities=24%  Similarity=0.223  Sum_probs=53.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHH-HHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK-SVKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~-~v~~~~~~~~~  198 (328)
                      -.|.+|+|.|+ ||+|...++.+...|+ +|+++++++++++.+. ++     +....   .|.++.+ .+.+.....  
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~-~l-----Ga~~~---i~~~~~d~~~~~~~~~~--   93 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL-----GATEC---LNPKDYDKPIYEVICEK--   93 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT-----TCSEE---ECGGGCSSCHHHHHHHH--
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHH-Hc-----CCcEE---EcCCCchhHHHHHHHHh--
Confidence            46889999986 8999999999999997 6888999988875542 22     32222   2333322 223333222  


Q ss_pred             hcCCccEEEEcccc
Q psy4246         199 KFRSLNILVLNAGV  212 (328)
Q Consensus       199 ~~g~id~lvnnAg~  212 (328)
                      ..+.+|++|.++|.
T Consensus        94 ~~~G~d~vid~~g~  107 (174)
T d1p0fa2          94 TNGGVDYAVECAGR  107 (174)
T ss_dssp             TTSCBSEEEECSCC
T ss_pred             cCCCCcEEEEcCCC
Confidence            23579999999885

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.36  E-value=0.011  Score=46.20  Aligned_cols=42  Identities=21%  Similarity=0.137  Sum_probs=36.3

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAIS  165 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~  165 (328)
                      .|++.|.|+ |.+|.++|..|+++|++|.+.+|+++..+....
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~   42 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD   42 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            377889998 899999999999999999999999877665543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.0029  Score=49.41  Aligned_cols=45  Identities=16%  Similarity=0.251  Sum_probs=39.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKI  167 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l  167 (328)
                      ++|.|+|.|+ ||.+++++..|.+.|+ +|.++.|+.++.+.+...+
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~   61 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY   61 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence            6788999988 8999999999999997 7999999998877766544

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.31  E-value=0.0021  Score=50.70  Aligned_cols=50  Identities=26%  Similarity=0.364  Sum_probs=43.0

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhh
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE  170 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~  170 (328)
                      .+++||.|||.|+ ||.+++++..|.+.| +|.++.|+.++.+++...+...
T Consensus        14 ~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~   63 (177)
T d1nvta1          14 GRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEK   63 (177)
T ss_dssp             CCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHh
Confidence            4689999999988 689999999998777 9999999999988888777544

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.27  E-value=0.013  Score=45.82  Aligned_cols=85  Identities=15%  Similarity=0.164  Sum_probs=59.4

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHH---------------HhhCCCCeEEEEEcccCCHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKI---------------LTEKPSAQCIAMELNLCRLKS  188 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l---------------~~~~~~~~~~~~~~Dls~~~~  188 (328)
                      +.|-|.|- |-+|.++|+.|++.|++|++.+|+.++.+++.++-               ....  .....+...+.+.+.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ii~~~~~~~~   79 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKL--KKPRRIILLVKAGQA   79 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHB--CSSCEEEECSCTTHH
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhh--cccceEEEecCchHH
Confidence            45667776 88999999999999999999999998877664431               1111  122334445667778


Q ss_pred             HHHHHHHHHHhcCCccEEEEccc
Q psy4246         189 VKKFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       189 v~~~~~~~~~~~g~id~lvnnAg  211 (328)
                      +..+.+.+.....+=+++|...-
T Consensus        80 v~~v~~~l~~~~~~g~iiid~sT  102 (176)
T d2pgda2          80 VDNFIEKLVPLLDIGDIIIDGGN  102 (176)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHHHhccccCcEEEecCc
Confidence            88888877766555566766543

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.21  E-value=0.021  Score=43.96  Aligned_cols=79  Identities=20%  Similarity=0.243  Sum_probs=55.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCC--CCeEEEEEcccCCHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKP--SAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .++...+.|.|+ |.+|..+|..|+..|.  +++++|++.+.++....++.....  +........|..           
T Consensus        16 ~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~-----------   83 (159)
T d2ldxa1          16 KLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN-----------   83 (159)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG-----------
T ss_pred             cCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh-----------
Confidence            345556777786 9999999999999984  799999998887766667764321  222222333432           


Q ss_pred             HHHhcCCccEEEEccccC
Q psy4246         196 YQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~  213 (328)
                         ....-|++|..||..
T Consensus        84 ---~~~~adivvitag~~   98 (159)
T d2ldxa1          84 ---VSANSKLVIITAGAR   98 (159)
T ss_dssp             ---GGTTEEEEEECCSCC
T ss_pred             ---hhccccEEEEecccc
Confidence               124689999999985

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.18  E-value=0.007  Score=46.77  Aligned_cols=41  Identities=17%  Similarity=0.128  Sum_probs=34.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA  163 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~  163 (328)
                      .|.+++|.|+ |+||...+..+...|++|+++++++++++.+
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            5788999875 9999999888888999999999998876543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.17  E-value=0.0033  Score=50.40  Aligned_cols=79  Identities=16%  Similarity=0.093  Sum_probs=51.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.+|+|.|+ |+||...+..+...|+ +|+++++++++++.+ +++     +...   ..|-.+.+ +.+.+.++. .-
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a-~~~-----Ga~~---~~~~~~~~-~~~~i~~~t-~g   92 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQ-----GFEI---ADLSLDTP-LHEQIAALL-GE   92 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT-----TCEE---EETTSSSC-HHHHHHHHH-SS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhh-hhc-----cccE---EEeCCCcC-HHHHHHHHh-CC
Confidence            5889999986 8999888888777887 788889988776543 222     3332   22333332 222233321 22


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      ..+|++|.+.|.
T Consensus        93 ~g~D~vid~vG~  104 (195)
T d1kola2          93 PEVDCAVDAVGF  104 (195)
T ss_dssp             SCEEEEEECCCT
T ss_pred             CCcEEEEECccc
Confidence            469999999985

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.13  E-value=0.0092  Score=45.79  Aligned_cols=80  Identities=11%  Similarity=0.042  Sum_probs=51.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhC--CCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEK--PSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +.+.+.|.|+ |.+|..+|..|+..| ++++++|.+++.++.....+....  .+........  ++.   +..+     
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~~---~~~~-----   74 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE--YSY---EAAL-----   74 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE--CSH---HHHH-----
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc--Cch---hhhh-----
Confidence            4456777897 899999999999888 489999998877666555554321  0111111111  111   1111     


Q ss_pred             hcCCccEEEEccccCC
Q psy4246         199 KFRSLNILVLNAGVFG  214 (328)
Q Consensus       199 ~~g~id~lvnnAg~~~  214 (328)
                        ..-|++|..||...
T Consensus        75 --~~adiVvitag~~~   88 (154)
T d1pzga1          75 --TGADCVIVTAGLTK   88 (154)
T ss_dssp             --TTCSEEEECCSCSS
T ss_pred             --cCCCeEEEeccccc
Confidence              36899999999863

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.08  E-value=0.0054  Score=47.88  Aligned_cols=78  Identities=21%  Similarity=0.200  Sum_probs=49.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.+++|.|+ |++|...+..+...|+ +|+++++++++++.+. ++     +.. .++  |.++ +.++...+..  ..
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~-~~-----ga~-~~i--~~~~-~~~~~~~~~~--~~   98 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RL-----GAD-HVV--DARR-DPVKQVMELT--RG   98 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HT-----TCS-EEE--ETTS-CHHHHHHHHT--TT
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHh-hc-----ccc-eee--cCcc-cHHHHHHHhh--CC
Confidence            5789999886 9999999988888887 6677788877655432 22     222 222  3222 3333333321  12


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      ..+|++|.++|.
T Consensus        99 ~g~d~vid~~g~  110 (172)
T d1h2ba2          99 RGVNVAMDFVGS  110 (172)
T ss_dssp             CCEEEEEESSCC
T ss_pred             CCceEEEEecCc
Confidence            359999999995

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.01  E-value=0.0053  Score=48.20  Aligned_cols=79  Identities=19%  Similarity=0.171  Sum_probs=52.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCC-HHHHHHHHHHHHHh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR-LKSVKKFAEEYQKK  199 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~~  199 (328)
                      .|.+|+|.|+ ||||...+..+...|+ +|+++++++++++. .+++     |... +  +|... .+.++...+..  .
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~-a~~~-----Ga~~-~--i~~~~~~~~~~~~~~~~--~   95 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPK-AKAL-----GATD-C--LNPRELDKPVQDVITEL--T   95 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHT-----TCSE-E--ECGGGCSSCHHHHHHHH--H
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHH-HHHh-----CCCc-c--cCCccchhhhhhhHhhh--h
Confidence            5789999975 9999999999999998 57788888877543 3333     3222 2  22222 12333333333  2


Q ss_pred             cCCccEEEEcccc
Q psy4246         200 FRSLNILVLNAGV  212 (328)
Q Consensus       200 ~g~id~lvnnAg~  212 (328)
                      .+++|++|.++|.
T Consensus        96 ~~G~d~vie~~G~  108 (174)
T d1e3ia2          96 AGGVDYSLDCAGT  108 (174)
T ss_dssp             TSCBSEEEESSCC
T ss_pred             cCCCcEEEEeccc
Confidence            3679999999995

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0047  Score=49.36  Aligned_cols=44  Identities=23%  Similarity=0.188  Sum_probs=37.3

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL  168 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~  168 (328)
                      |.|.|.|| |-+|..+|..|+..|++|++.+++++.++...+.+.
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~   48 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE   48 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHH
Confidence            67888898 779999999999999999999999987766555443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.97  E-value=0.018  Score=43.61  Aligned_cols=101  Identities=21%  Similarity=0.161  Sum_probs=58.2

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      .+.|+||+|.+|.++|..|+.+|.  ++++++.+..+.+  ...+.....-.....+   + ...+..+.+       ..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~--a~Dl~~~~~~~~~~~~---~-~~~~~~~~~-------~~   68 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV--AADLSHIETRATVKGY---L-GPEQLPDCL-------KG   68 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH--HHHHTTSSSSCEEEEE---E-SGGGHHHHH-------TT
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh--hHHHhhhhhhcCCCeE---E-cCCChHHHh-------CC
Confidence            478999999999999999999985  6999998764432  2333322111111111   1 122222222       36


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHH
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQL  242 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~  242 (328)
                      -|++|..||..... ..+..   ..++.|..-.-.+.+.+
T Consensus        69 aDivVitag~~~~~-g~sR~---~ll~~N~~i~~~i~~~i  104 (144)
T d1mlda1          69 CDVVVIPAGVPRKP-GMTRD---DLFNTNATIVATLTAAC  104 (144)
T ss_dssp             CSEEEECCSCCCCT-TCCGG---GGHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCcCCCC-CCCcc---hHHHHHHHHHHHHHHHH
Confidence            89999999975322 22322   34566665444444333

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.91  E-value=0.072  Score=40.09  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=57.6

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChh--HHHHHHHHHHhh----CCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC--RVILACRSLD--KANDAISKILTE----KPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~--~~~~~~~~l~~~----~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      .+.|+||+|.+|.++|..|+.+|.  ++++++++++  +++....++...    ....++.....+  +.          
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~--d~----------   69 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDE--NL----------   69 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETT--CG----------
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcc--hH----------
Confidence            378999999999999999999993  8999998753  334344444432    112233333322  11          


Q ss_pred             HHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHH
Q psy4246         197 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAH  235 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~  235 (328)
                       +....-|++|.+||..... ..+.   ...+..|..=.
T Consensus        70 -~~l~~aDvVVitAG~~~~~-g~sR---~dl~~~Na~iv  103 (145)
T d1hyea1          70 -RIIDESDVVIITSGVPRKE-GMSR---MDLAKTNAKIV  103 (145)
T ss_dssp             -GGGTTCSEEEECCSCCCCT-TCCH---HHHHHHHHHHH
T ss_pred             -HHhccceEEEEecccccCC-CCCh---hhhhhhhHHHH
Confidence             1124689999999985322 2232   34556666533

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.91  E-value=0.029  Score=42.77  Aligned_cols=104  Identities=14%  Similarity=0.115  Sum_probs=59.6

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC---------eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHH
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC---------RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga---------~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .|.|+||+|.+|..++..|+..+.         +++..+++.+.++....++.... ......+...-.+          
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------   74 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA-FPLLAGLEATDDP----------   74 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT-CTTEEEEEEESCH----------
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccc-cccccccccCCch----------
Confidence            689999999999999999998753         22333455555555555544332 1222223222111          


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q psy4246         196 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  248 (328)
Q Consensus       196 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~  248 (328)
                       .+.+...|++|..||.... ...+.+   ..+..|+.    +++.+.+.+.+
T Consensus        75 -~~~~~~advViitaG~~~~-pg~~r~---dl~~~N~~----i~~~~~~~i~k  118 (154)
T d1y7ta1          75 -KVAFKDADYALLVGAAPRK-AGMERR---DLLQVNGK----IFTEQGRALAE  118 (154)
T ss_dssp             -HHHTTTCSEEEECCCCCCC-TTCCHH---HHHHHHHH----HHHHHHHHHHH
T ss_pred             -hhhcccccEEEeecCcCCC-CCCcHH---HHHHHHHH----HHHHHHHHHHH
Confidence             1223478999999998632 223333   33455554    44555555554

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0047  Score=55.67  Aligned_cols=65  Identities=23%  Similarity=0.310  Sum_probs=50.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEEE
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAME  180 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~  180 (328)
                      |++..|||.|+ ||||.++++.|+..|. ++.++|.+.                   .+.+.+.+.+...+|..++..+.
T Consensus        35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            56778999999 7899999999999997 788887531                   24666777777777777888877


Q ss_pred             cccCCH
Q psy4246         181 LNLCRL  186 (328)
Q Consensus       181 ~Dls~~  186 (328)
                      .++.+.
T Consensus       114 ~~i~~~  119 (426)
T d1yovb1         114 NKIQDF  119 (426)
T ss_dssp             SCGGGB
T ss_pred             ccccch
Confidence            777553

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.81  E-value=0.058  Score=42.97  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=58.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..+++|++||=-|+++|.   ++..++..|+ +|+.++.++..++.+.+.+...  +.+..++..|+.+.          
T Consensus        42 ~~dl~g~~vLDlg~GtG~---l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~--~~~~~~~~~d~~~~----------  106 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGV---LSYGALLLGAKEVICVEVDKEAVDVLIENLGEF--KGKFKVFIGDVSEF----------  106 (201)
T ss_dssp             TTSSTTCEEEEETCTTCH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG--TTSEEEEESCGGGC----------
T ss_pred             cCCCCCCEEEECcCcchH---HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc--CCCceEEECchhhh----------
Confidence            457899999988887762   3444567886 8999999988877766665543  56788888887542          


Q ss_pred             HHhcCCccEEEEccccC
Q psy4246         197 QKKFRSLNILVLNAGVF  213 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~  213 (328)
                         .+++|++|.|.-+.
T Consensus       107 ---~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1         107 ---NSRVDIVIMNPPFG  120 (201)
T ss_dssp             ---CCCCSEEEECCCCS
T ss_pred             ---CCcCcEEEEcCccc
Confidence               35899999998653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.76  E-value=0.055  Score=41.49  Aligned_cols=106  Identities=17%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhC--CCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEK--PSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      +..+.+.|.|+ |.+|.++|..|+.+|.  +++++|++++.++..+..+....  .+........|..+           
T Consensus        18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~-----------   85 (160)
T d1i0za1          18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV-----------   85 (160)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGG-----------
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhh-----------
Confidence            45567778896 8999999999999995  79999999888776666665421  12222223333322           


Q ss_pred             HHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q psy4246         197 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG  249 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  249 (328)
                         ...-|++|..||..... ..+..   ..+..|..    +.+.+.+.+.+.
T Consensus        86 ---~~~adiVVitAg~~~~~-g~tR~---~l~~~N~~----i~~~i~~~i~~~  127 (160)
T d1i0za1          86 ---TANSKIVVVTAGVRQQE-GESRL---NLVQRNVN----VFKFIIPQIVKY  127 (160)
T ss_dssp             ---GTTCSEEEECCSCCCCT-TCCGG---GGHHHHHH----HHHHHHHHHHHH
T ss_pred             ---cccccEEEEecCCcccc-CcchH---HHHHHHHH----HHHHHHHHHHhc
Confidence               24689999999985322 22222   23334443    556666666554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.74  E-value=0.012  Score=45.27  Aligned_cols=84  Identities=17%  Similarity=0.156  Sum_probs=50.9

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCC-----CCeEEEEEcccCCHHHHHHHH---HHHH
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-----SAQCIAMELNLCRLKSVKKFA---EEYQ  197 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dls~~~~v~~~~---~~~~  197 (328)
                      |-|.|- |-+|..+|+.|++.|++|++.+|+.++.+++.+.......     -.+...+-+=+.+.+.++.++   +.+.
T Consensus         3 IgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~   81 (161)
T d1vpda2           3 VGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGII   81 (161)
T ss_dssp             EEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHH
T ss_pred             EEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchh
Confidence            445554 8999999999999999999999998877665432110000     002223444456677777765   2334


Q ss_pred             HhcCCccEEEEcc
Q psy4246         198 KKFRSLNILVLNA  210 (328)
Q Consensus       198 ~~~g~id~lvnnA  210 (328)
                      ....+=+++|.+.
T Consensus        82 ~~~~~g~iiid~s   94 (161)
T d1vpda2          82 EGAKPGTVLIDMS   94 (161)
T ss_dssp             HHCCTTCEEEECS
T ss_pred             hccCCCCEEEECC
Confidence            3333334555543

>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 3, APBB3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0036  Score=31.42  Aligned_cols=25  Identities=44%  Similarity=0.862  Sum_probs=19.2

Q ss_pred             CCccccceecCCCcEEEEeCcCCccc
Q psy4246          17 LPPGWEERVTADGCVYYVNHATEGTQ   42 (328)
Q Consensus        17 lp~~w~~~~~~~g~~~~~~~~~~~t~   42 (328)
                      ||+||++-.+..| .||...-|.+||
T Consensus         2 LPpGW~~i~D~ag-~YyWHiPtGtTQ   26 (26)
T d2ysca1           2 LPPGWRKIHDAAG-TYYWHVPSGSTQ   26 (26)
T ss_dssp             CCTTEEEEEETTE-EEEEESSSCCEE
T ss_pred             cCccceeeeccCc-eEEEeccCCccC
Confidence            8999999777766 577777776664

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.012  Score=48.76  Aligned_cols=82  Identities=15%  Similarity=0.201  Sum_probs=58.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh-------------------hHHHHHHHHHHhhCCCCeEEEE
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSL-------------------DKANDAISKILTEKPSAQCIAM  179 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~  179 (328)
                      .|++++|+|.|+ ||+|..++..|+..|. ++.++|.+.                   .+.+.+.+.+....|..++..+
T Consensus        27 kL~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~  105 (247)
T d1jw9b_          27 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  105 (247)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhh
Confidence            478899999996 8999999999999997 788887531                   2566677778777777777777


Q ss_pred             EcccCCHHHHHHHHHHHHHhcCCccEEEEcc
Q psy4246         180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNA  210 (328)
Q Consensus       180 ~~Dls~~~~v~~~~~~~~~~~g~id~lvnnA  210 (328)
                      ...+++.. .....       ...|++|.+.
T Consensus       106 ~~~~~~~~-~~~~~-------~~~divid~~  128 (247)
T d1jw9b_         106 NALLDDAE-LAALI-------AEHDLVLDCT  128 (247)
T ss_dssp             CSCCCHHH-HHHHH-------HTSSEEEECC
T ss_pred             hhhhhhcc-ccccc-------cccceeeecc
Confidence            66555332 22222       2578887643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.49  E-value=0.0063  Score=48.29  Aligned_cols=44  Identities=18%  Similarity=0.136  Sum_probs=37.0

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKIL  168 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~  168 (328)
                      |++.|.|| |-||..+|..|+..|++|++.+++.+.++...+.+.
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~   48 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAA   48 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhh
Confidence            45788888 779999999999999999999999987776555543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.47  E-value=0.042  Score=41.15  Aligned_cols=101  Identities=15%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             EEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhCC-CCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         126 AIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEKP-SAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +.|.|+ |.+|..+|..|+.+|  .+++++|++++.++....++....+ ..+......|.   ++           ...
T Consensus         3 I~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~---~~-----------~~~   67 (140)
T d1a5za1           3 IGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY---AD-----------LKG   67 (140)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG---GG-----------GTT
T ss_pred             EEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH---HH-----------hcC
Confidence            556686 889999999999988  4899999998877765555544221 12333333332   21           236


Q ss_pred             ccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q psy4246         203 LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG  249 (328)
Q Consensus       203 id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  249 (328)
                      -|++|..||...... .+.   ...+..|..    +.+.+.+.+.+.
T Consensus        68 adivvitag~~~~~g-~~r---~dl~~~N~~----I~~~i~~~i~~~  106 (140)
T d1a5za1          68 SDVVIVAAGVPQKPG-ETR---LQLLGRNAR----VMKEIARNVSKY  106 (140)
T ss_dssp             CSEEEECCCCCCCSS-CCH---HHHHHHHHH----HHHHHHHHHHHH
T ss_pred             CCEEEEecccccCCC-cch---hhhhccccc----hHHHHHHHHHhc
Confidence            799999999853322 222   233444542    455556666543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.45  E-value=0.012  Score=45.85  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=51.6

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHH-HHHHHHHHHH
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKS-VKKFAEEYQK  198 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~-v~~~~~~~~~  198 (328)
                      -.|.+++|.|+ +|+|...+..++..|+ +|+++++++++++.+. ++     |... ++  |..+.+. +++.....  
T Consensus        27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~~-----GAd~-~i--n~~~~~~~~~~~~~~~--   94 (175)
T d1cdoa2          27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF-----GATD-FV--NPNDHSEPISQVLSKM--   94 (175)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT-----TCCE-EE--CGGGCSSCHHHHHHHH--
T ss_pred             CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH-Hc-----CCcE-EE--cCCCcchhHHHHHHhh--
Confidence            36888999986 7788888888888887 6888899988765433 22     3222 22  3333222 23333322  


Q ss_pred             hcCCccEEEEcccc
Q psy4246         199 KFRSLNILVLNAGV  212 (328)
Q Consensus       199 ~~g~id~lvnnAg~  212 (328)
                      .-+.+|+++.+.|.
T Consensus        95 ~~~G~d~vid~~G~  108 (175)
T d1cdoa2          95 TNGGVDFSLECVGN  108 (175)
T ss_dssp             HTSCBSEEEECSCC
T ss_pred             ccCCcceeeeecCC
Confidence            12579999999995

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.41  E-value=0.075  Score=39.88  Aligned_cols=100  Identities=15%  Similarity=0.119  Sum_probs=60.8

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhh--CCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         126 AIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTE--KPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +.|.|+ |.+|.++|..|+.+|.  ++++++++++.++.....+...  +.+........|..+              ..
T Consensus         4 i~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~--------------~~   68 (143)
T d1llda1           4 LAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI--------------CR   68 (143)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG--------------GT
T ss_pred             EEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH--------------hh
Confidence            556686 9999999999999985  7999999988776655555542  112222222223221              12


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  248 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~  248 (328)
                      .-|++|..||..... ..+.   ...+..|..    +.+.+.+.+.+
T Consensus        69 daDvVVitaG~~~~~-g~~R---~dl~~~N~~----i~~~i~~~i~~  107 (143)
T d1llda1          69 DADMVVITAGPRQKP-GQSR---LELVGATVN----ILKAIMPNLVK  107 (143)
T ss_dssp             TCSEEEECCCCCCCT-TCCH---HHHHHHHHH----HHHHHHHHHHH
T ss_pred             CCcEEEEecccccCC-CCch---hhhhhhhHH----HHHHHHHHHHh
Confidence            579999999985322 2232   234555654    44444454444

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.0038  Score=47.70  Aligned_cols=35  Identities=20%  Similarity=0.461  Sum_probs=32.1

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeC
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACR  155 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r  155 (328)
                      .|+||++||.|| |.+|..-++.|++.|++|.+++.
T Consensus        10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence            589999999999 56999999999999999999864

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.25  E-value=0.057  Score=40.54  Aligned_cols=103  Identities=14%  Similarity=0.077  Sum_probs=62.8

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCC--hhHHHHHHHHHHhhCC-CCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC--RVILACRS--LDKANDAISKILTEKP-SAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~--~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      .+.|+||+|.+|.++|..|+.+|.  ++++.+.+  ++.++....++....+ ..+......|..   .           
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~---~-----------   67 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE---D-----------   67 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG---G-----------
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH---H-----------
Confidence            477999999999999999999985  68998864  3344434444443111 223333334432   1           


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG  249 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  249 (328)
                      ...-|++|..||...... .+   -...+..|..    +.+.+.+.+.+.
T Consensus        68 ~~~aDiVvitaG~~~~~g-~~---R~dl~~~N~~----I~~~i~~~i~~~  109 (142)
T d1o6za1          68 TAGSDVVVITAGIPRQPG-QT---RIDLAGDNAP----IMEDIQSSLDEH  109 (142)
T ss_dssp             GTTCSEEEECCCCCCCTT-CC---HHHHHHHHHH----HHHHHHHHHHTT
T ss_pred             hhhcCEEEEecccccccC-Cc---hhhHHHHHHH----HHHHHHHHHHhc
Confidence            236899999999753222 22   3345666654    455556666543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.20  E-value=0.05  Score=40.86  Aligned_cols=101  Identities=18%  Similarity=0.160  Sum_probs=56.9

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhCCC-CeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPS-AQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+.|.|+ |.+|..+|..|+.+|.  +|+++|++++.++....++....+- ........|   .+           ...
T Consensus         3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~~-----------~~~   67 (142)
T d1y6ja1           3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---YS-----------DVK   67 (142)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---GG-----------GGT
T ss_pred             eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---HH-----------HhC
Confidence            3555687 9999999999999985  7999999987766555566543221 122222222   11           224


Q ss_pred             CccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  248 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~  248 (328)
                      .-|++|..||...... .+   -...+..|..    +.+.+.+.+.+
T Consensus        68 ~adivvitag~~~~~~-~~---r~~l~~~N~~----i~~~i~~~i~~  106 (142)
T d1y6ja1          68 DCDVIVVTAGANRKPG-ET---RLDLAKKNVM----IAKEVTQNIMK  106 (142)
T ss_dssp             TCSEEEECCCC-------C---HHHHHHHHHH----HHHHHHHHHHH
T ss_pred             CCceEEEecccccCcC-cc---hhHHhhHHHH----HHHHHHHHhhc
Confidence            6799999999753221 12   2344555554    44455555554

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.021  Score=44.10  Aligned_cols=42  Identities=29%  Similarity=0.385  Sum_probs=37.0

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK  159 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~  159 (328)
                      ..++.||.++|.|.|.=+|+-++..|.++|++|.++......
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~   73 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN   73 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhccccccccccch
Confidence            457899999999999999999999999999999988765433

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.019  Score=44.62  Aligned_cols=43  Identities=16%  Similarity=0.192  Sum_probs=38.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKA  160 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~  160 (328)
                      +.+++||.++|.|.|.=+|+-++..|+++|+.|.++......+
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l   76 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHL   76 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSH
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccH
Confidence            4578999999999999999999999999999999988765443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.63  E-value=0.11  Score=40.16  Aligned_cols=37  Identities=19%  Similarity=0.219  Sum_probs=32.0

Q ss_pred             CCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHH
Q psy4246         131 ANTGIGFETARSLALHGCRVILACRSLDKANDAISKI  167 (328)
Q Consensus       131 as~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l  167 (328)
                      |.|-+|.++|+.|++.|++|.+.+|+.++.+++.++.
T Consensus         8 GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~   44 (178)
T d1pgja2           8 GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN   44 (178)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT
T ss_pred             eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC
Confidence            4578999999999999999999999998887776553

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.62  E-value=0.045  Score=43.56  Aligned_cols=73  Identities=16%  Similarity=0.159  Sum_probs=53.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..++.||+||=-|+++|+   ++..++..|+ +|+.++.+++.++.+.+.      -.++.++.+|+.+.          
T Consensus        44 ~~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N------~~~~~~~~~D~~~l----------  104 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRN------CGGVNFMVADVSEI----------  104 (197)
T ss_dssp             HTSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHH------CTTSEEEECCGGGC----------
T ss_pred             cCCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHc------cccccEEEEehhhc----------
Confidence            457899999999998883   4455777886 699999998766544332      23567888998643          


Q ss_pred             HHhcCCccEEEEcccc
Q psy4246         197 QKKFRSLNILVLNAGV  212 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~  212 (328)
                         .+++|++|.|.-+
T Consensus       105 ---~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         105 ---SGKYDTWIMNPPF  117 (197)
T ss_dssp             ---CCCEEEEEECCCC
T ss_pred             ---CCcceEEEeCccc
Confidence               2689999999654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.57  E-value=0.11  Score=39.17  Aligned_cols=75  Identities=13%  Similarity=0.170  Sum_probs=49.6

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhC--CCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         125 NAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEK--PSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+.|.|+ |.+|.++|..|+..+ .+++++|++++.++.....+....  .+.+......+  +.           +...
T Consensus         5 KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~-----------~~~~   70 (150)
T d1t2da1           5 KIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY-----------DDLA   70 (150)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG-----------GGGT
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc-----------cccC
Confidence            4667785 899999999888887 489999998877666555554321  12233333222  11           1224


Q ss_pred             CccEEEEccccC
Q psy4246         202 SLNILVLNAGVF  213 (328)
Q Consensus       202 ~id~lvnnAg~~  213 (328)
                      .-|++|..||..
T Consensus        71 ~advvvitag~~   82 (150)
T d1t2da1          71 GADVVIVTAGFT   82 (150)
T ss_dssp             TCSEEEECCSCS
T ss_pred             CCcEEEEecccc
Confidence            689999999985

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.50  E-value=0.1  Score=40.17  Aligned_cols=78  Identities=12%  Similarity=0.089  Sum_probs=55.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ...-.++|.|+ |=-|+..++.....|++|.+.|.+.+.++++......     .+..   -.++.+.+++.+.      
T Consensus        30 v~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~~~---~~~~~~~l~~~~~------   94 (168)
T d1pjca1          30 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVEL---LYSNSAEIETAVA------   94 (168)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEE---EECCHHHHHHHHH------
T ss_pred             CCCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----ccee---ehhhhhhHHHhhc------
Confidence            34567888887 5678888899999999999999999888776555422     3333   2345555544443      


Q ss_pred             CCccEEEEccccCC
Q psy4246         201 RSLNILVLNAGVFG  214 (328)
Q Consensus       201 g~id~lvnnAg~~~  214 (328)
                       .-|+||..+-+.+
T Consensus        95 -~aDivI~aalipG  107 (168)
T d1pjca1          95 -EADLLIGAVLVPG  107 (168)
T ss_dssp             -TCSEEEECCCCTT
T ss_pred             -cCcEEEEeeecCC
Confidence             5799999998753

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.48  E-value=0.075  Score=43.30  Aligned_cols=78  Identities=12%  Similarity=0.029  Sum_probs=59.7

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      ....++.||=.|++.|.   ++..|+++|.+|+.++.+++-++.+.+.+...  +.++.++..|+.+.+           
T Consensus        34 ~~~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~--~~~v~~~~~d~~~~~-----------   97 (246)
T d1y8ca_          34 NNLVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ--GLKPRLACQDISNLN-----------   97 (246)
T ss_dssp             TTCCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECCCGGGCC-----------
T ss_pred             hCCCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhcccccccc--Cccceeeccchhhhc-----------
Confidence            34677889999999885   78889999999999999988877766655544  557888999987642           


Q ss_pred             hcCCccEEEEcccc
Q psy4246         199 KFRSLNILVLNAGV  212 (328)
Q Consensus       199 ~~g~id~lvnnAg~  212 (328)
                      ..+++|++++.-+.
T Consensus        98 ~~~~fD~i~~~~~~  111 (246)
T d1y8ca_          98 INRKFDLITCCLDS  111 (246)
T ss_dssp             CSCCEEEEEECTTG
T ss_pred             ccccccccceeeee
Confidence            12579999876544

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.45  E-value=0.1  Score=39.00  Aligned_cols=75  Identities=16%  Similarity=0.090  Sum_probs=48.7

Q ss_pred             EEEcCCCCCccHHHHHHHHHCC--CeEEEeeCChhHHHHHHHHHHhhC--CCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         126 AIVTGANTGIGFETARSLALHG--CRVILACRSLDKANDAISKILTEK--PSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~G--a~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +.|+|| |.+|.++|..|+..|  .+|+++|++++.++.....+....  ..........  .+.+.           +.
T Consensus         3 I~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~~-----------~~   68 (142)
T d1guza1           3 ITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYAD-----------TA   68 (142)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGGG-----------GT
T ss_pred             EEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHHH-----------hc
Confidence            566796 899999999999998  489999999877665444443210  0112222222  12221           23


Q ss_pred             CccEEEEccccCC
Q psy4246         202 SLNILVLNAGVFG  214 (328)
Q Consensus       202 ~id~lvnnAg~~~  214 (328)
                      .-|++|..||...
T Consensus        69 dadvvvitag~~~   81 (142)
T d1guza1          69 NSDIVIITAGLPR   81 (142)
T ss_dssp             TCSEEEECCSCCC
T ss_pred             CCeEEEEEEecCC
Confidence            6899999999853

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.21  Score=37.34  Aligned_cols=77  Identities=16%  Similarity=0.108  Sum_probs=48.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHHC-C--CeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         125 NAIVTGANTGIGFETARSLALH-G--CRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~-G--a~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+.|+|++|.+|.++|..|+.+ +  .++++.+..+ ..+.....+...........+ ..-.+.+.    +       .
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~-~~~~~~~~----~-------~   68 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGF-SGEDATPA----L-------E   68 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEE-CSSCCHHH----H-------T
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEE-EcCCCccc----c-------C
Confidence            4779999999999999988743 4  5899999864 444444555543212222222 22222221    1       2


Q ss_pred             CccEEEEccccCC
Q psy4246         202 SLNILVLNAGVFG  214 (328)
Q Consensus       202 ~id~lvnnAg~~~  214 (328)
                      .-|++|..||...
T Consensus        69 ~aDvvvitaG~~~   81 (145)
T d2cmda1          69 GADVVLISAGVRR   81 (145)
T ss_dssp             TCSEEEECCSCCC
T ss_pred             CCCEEEECCCccC
Confidence            5799999999853

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.15  E-value=0.026  Score=45.01  Aligned_cols=40  Identities=23%  Similarity=0.203  Sum_probs=35.3

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      +.+|.||++.|.|- |.||+.+|+.|..-|++|+..++...
T Consensus        38 g~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          38 GREVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             BCCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CccccCCeEEEecc-cccchhHHHhHhhhcccccccCcccc
Confidence            45789999999997 89999999999999999999986543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.13  E-value=0.03  Score=43.49  Aligned_cols=39  Identities=26%  Similarity=0.196  Sum_probs=35.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS  156 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~  156 (328)
                      +.+++||.++|.|-|.=+|+-+|..|+++|+.|..+..+
T Consensus        24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            358999999999999999999999999999999988654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.13  E-value=0.057  Score=42.76  Aligned_cols=83  Identities=13%  Similarity=0.107  Sum_probs=60.8

Q ss_pred             CCceEE-EcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAI-VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~l-ITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.++| +|-|+||...++.+.+ . +.+|+.+|++++.++.+...+...  +.++.++..+.++...+   +...  ..
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~--~~r~~~~~~~f~~~~~~---~~~~--~~   93 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEF--SDRVSLFKVSYREADFL---LKTL--GI   93 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGG--TTTEEEEECCGGGHHHH---HHHT--TC
T ss_pred             CCCEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhccc--cccccchhHHHhhHHHH---HHHc--CC
Confidence            455555 7888888888888776 3 469999999999888777666554  56899999988764432   2221  13


Q ss_pred             CCccEEEEccccC
Q psy4246         201 RSLNILVLNAGVF  213 (328)
Q Consensus       201 g~id~lvnnAg~~  213 (328)
                      +.+|+++...|+.
T Consensus        94 ~~vdgIl~DlGvS  106 (192)
T d1m6ya2          94 EKVDGILMDLGVS  106 (192)
T ss_dssp             SCEEEEEEECSCC
T ss_pred             CCcceeeeccchh
Confidence            6899999999984

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.13  E-value=0.2  Score=37.79  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=57.1

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCC-------eEEEeeCCh--hHHHHHHHHHHhhC-CCCeEEEEEcccCCHHHHHHHHH
Q psy4246         125 NAIVTGANTGIGFETARSLALHGC-------RVILACRSL--DKANDAISKILTEK-PSAQCIAMELNLCRLKSVKKFAE  194 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga-------~Vi~~~r~~--~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~~~  194 (328)
                      .|.|+||+|.+|.++|..|+..+.       .+++.+.+.  ..++....++.... +.........|   .        
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~--------   73 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDK---E--------   73 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESC---H--------
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcc---c--------
Confidence            588999999999999999987652       356666543  33344333333321 11111112222   1        


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q psy4246         195 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG  249 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  249 (328)
                        .+.+...|++|..||..........+    .+..|.    .+.+.+.+.+.+.
T Consensus        74 --~~~~~~~dvVVitag~~~~~g~sr~d----ll~~N~----~i~k~~~~~i~k~  118 (154)
T d5mdha1          74 --EIAFKDLDVAILVGSMPRRDGMERKD----LLKANV----KIFKCQGAALDKY  118 (154)
T ss_dssp             --HHHTTTCSEEEECCSCCCCTTCCTTT----THHHHH----HHHHHHHHHHHHH
T ss_pred             --ccccCCceEEEEecccCCCCCCchhH----HHHHhH----HHHHHHHHHHHhh
Confidence              12234789999999986433222222    234444    3455555555543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.12  E-value=0.039  Score=45.00  Aligned_cols=48  Identities=13%  Similarity=0.244  Sum_probs=41.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISK  166 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~  166 (328)
                      ..+|+||+++|-|- |-+|..+|+.|.+.|++|++++.+...+.....+
T Consensus        34 ~~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~   81 (230)
T d1leha1          34 SDSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAE   81 (230)
T ss_dssp             SCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHh
Confidence            45799999999886 7899999999999999999999988777665544

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.07  E-value=0.24  Score=36.90  Aligned_cols=101  Identities=14%  Similarity=0.063  Sum_probs=60.6

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHhhC--CCCeEEEE-EcccCCHHHHHHHHHHHHHhc
Q psy4246         126 AIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEK--PSAQCIAM-ELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~-~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +.|.|+ |.+|.++|..|+.+|.  +++++|++++.++.....+....  -....... .-|..              ..
T Consensus         3 I~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~--------------~~   67 (142)
T d1ojua1           3 LGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS--------------LL   67 (142)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGG--------------GG
T ss_pred             EEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHH--------------Hh
Confidence            556686 9999999999999884  79999999888766555554321  11122222 22322              12


Q ss_pred             CCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q psy4246         201 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG  249 (328)
Q Consensus       201 g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  249 (328)
                      ..-|++|..||..... ..+   -...+..|..    +.+.+.+.+.+.
T Consensus        68 ~~adiVvitag~~~~~-g~~---r~~l~~~n~~----i~~~i~~~i~~~  108 (142)
T d1ojua1          68 KGSEIIVVTAGLARKP-GMT---RLDLAHKNAG----IIKDIAKKIVEN  108 (142)
T ss_dssp             TTCSEEEECCCCCCCS-SCC---HHHHHHHHHH----HHHHHHHHHHTT
T ss_pred             ccccEEEEeccccCCC-CCc---hHHHHHHhhH----HHHHHHHHHHhh
Confidence            3689999999975322 122   2333444443    445555555543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.98  E-value=0.11  Score=39.59  Aligned_cols=70  Identities=10%  Similarity=-0.025  Sum_probs=44.0

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCC-----CCeEEEEEcccCCHHHHHHHHHH
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP-----SAQCIAMELNLCRLKSVKKFAEE  195 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dls~~~~v~~~~~~  195 (328)
                      .|.|.| .|-+|.++|++|+++|++|.+.+|+.++.+.+...-.....     ......+..-+.+.+.++.++..
T Consensus         3 kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~   77 (162)
T d3cuma2           3 QIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLD   77 (162)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHS
T ss_pred             EEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhc
Confidence            355554 48899999999999999999999998776654322110000     01222344445566666666543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.093  Score=44.57  Aligned_cols=77  Identities=14%  Similarity=0.110  Sum_probs=54.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      .++||+||-.|++.|+   ++..+|+.|+ +|+.++.++.. ..+.+......-..++.++..|+.+...          
T Consensus        33 ~~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~-~~a~~~~~~~~~~~~i~~~~~~~~~l~~----------   98 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEIL-YQAMDIIRLNKLEDTITLIKGKIEEVHL----------   98 (311)
T ss_dssp             GTTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHH-HHHHHHHHHTTCTTTEEEEESCTTTSCC----------
T ss_pred             cCCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHH-HHHHHHHHHhCCCccceEEEeeHHHhcC----------
Confidence            3689999999999885   6777888997 68899887653 3344444444335688999999876531          


Q ss_pred             hcCCccEEEEcc
Q psy4246         199 KFRSLNILVLNA  210 (328)
Q Consensus       199 ~~g~id~lvnnA  210 (328)
                      ...++|++|..-
T Consensus        99 ~~~~~D~Ivse~  110 (311)
T d2fyta1          99 PVEKVDVIISEW  110 (311)
T ss_dssp             SCSCEEEEEECC
T ss_pred             ccccceEEEEee
Confidence            124789998753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.048  Score=41.89  Aligned_cols=41  Identities=24%  Similarity=0.241  Sum_probs=36.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK  159 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~  159 (328)
                      +..|.||+++|.|= |-||+.+|+.|...|++|++++.++-+
T Consensus        19 ~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~   59 (163)
T d1li4a1          19 DVMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPIN   59 (163)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccch
Confidence            45689999999987 589999999999999999999998754

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.22  Score=39.99  Aligned_cols=43  Identities=12%  Similarity=-0.018  Sum_probs=35.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKI  167 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l  167 (328)
                      .++.||..|++.|   ..+..|+++|++|+.++.++..++.+.++.
T Consensus        45 ~~~rvLd~GCG~G---~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~   87 (229)
T d2bzga1          45 SGLRVFFPLCGKA---VEMKWFADRGHSVVGVEISELGIQEFFTEQ   87 (229)
T ss_dssp             CSCEEEETTCTTC---THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCc---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence            6778999999877   468899999999999999988776655543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.82  E-value=0.041  Score=43.25  Aligned_cols=41  Identities=22%  Similarity=0.222  Sum_probs=35.5

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK  159 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~  159 (328)
                      +.++.||++.|.|. |.||+++|+.+..-|++|+..++...+
T Consensus        39 ~~~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1          39 GTEIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             BCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             cccccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCCh
Confidence            45789999999986 899999999999999999999876543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.73  E-value=0.024  Score=41.71  Aligned_cols=69  Identities=14%  Similarity=0.250  Sum_probs=48.3

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      |.++|.|. +.+|..+++.|  +|..|++++.+++..+...    ..    .+.++.+|.++++.++++      ...+-
T Consensus         1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~----~~----~~~~i~Gd~~~~~~L~~a------~i~~A   63 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVRKKVL----RS----GANFVHGDPTRVSDLEKA------NVRGA   63 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHHHHHH----HT----TCEEEESCTTSHHHHHHT------TCTTC
T ss_pred             CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHHHHHH----hc----CccccccccCCHHHHHHh------hhhcC
Confidence            56788886 78999999999  4667888888877654432    22    467788999998766553      12356


Q ss_pred             cEEEEc
Q psy4246         204 NILVLN  209 (328)
Q Consensus       204 d~lvnn  209 (328)
                      +.+|..
T Consensus        64 ~~vi~~   69 (129)
T d2fy8a1          64 RAVIVN   69 (129)
T ss_dssp             SEEEEC
T ss_pred             cEEEEe
Confidence            677653

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.71  E-value=0.049  Score=42.92  Aligned_cols=68  Identities=16%  Similarity=0.095  Sum_probs=46.4

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHH-------HHHhhCCCCeEEEEEcccCCH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAIS-------KILTEKPSAQCIAMELNLCRL  186 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~-------~l~~~~~~~~~~~~~~Dls~~  186 (328)
                      +.++.++++.|.|. |.||.++|+.|..-|.+|+..++..........       .+........+..+.+.+++.
T Consensus        39 ~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~  113 (188)
T d2naca1          39 AYDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPE  113 (188)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTT
T ss_pred             ceeccccceeeccc-cccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhccccccc
Confidence            45789999999986 789999999999999999999875322111110       011111234677777777753

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=93.66  E-value=0.18  Score=41.53  Aligned_cols=74  Identities=15%  Similarity=0.059  Sum_probs=54.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ...|++||=.|+++|+   ++..+++.|++|+.++.++..++.+.+.....  +.+..++..|+.+      .     ..
T Consensus       118 ~~~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~n--~~~~~~~~~d~~~------~-----~~  181 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKRN--GVRPRFLEGSLEA------A-----LP  181 (254)
T ss_dssp             CCTTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT--TCCCEEEESCHHH------H-----GG
T ss_pred             cCccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHHc--CCceeEEeccccc------c-----cc
Confidence            4689999999999886   44567888999999999999888776665543  4466677776521      1     12


Q ss_pred             cCCccEEEEc
Q psy4246         200 FRSLNILVLN  209 (328)
Q Consensus       200 ~g~id~lvnn  209 (328)
                      .++.|+++.|
T Consensus       182 ~~~fD~V~an  191 (254)
T d2nxca1         182 FGPFDLLVAN  191 (254)
T ss_dssp             GCCEEEEEEE
T ss_pred             ccccchhhhc
Confidence            3689999987

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.66  E-value=0.25  Score=37.49  Aligned_cols=85  Identities=14%  Similarity=0.160  Sum_probs=54.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCChhHHHHHHHHHHh----------hCCCCeEEEEEcccCCHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILT----------EKPSAQCIAMELNLCRLKSVKK  191 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~~~~~~~~~~l~~----------~~~~~~~~~~~~Dls~~~~v~~  191 (328)
                      |.++|.|. |-||..+|+.|.+.|.  +|+..+++.+.++.+.+.-..          ......+.++.   +-++.+.+
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila---~p~~~~~~   77 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS---SPVRTFRE   77 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC---SCHHHHHH
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc---CCchhhhh
Confidence            45888875 8999999999999995  788899998776655433110          00011222222   23567778


Q ss_pred             HHHHHHHhcCCccEEEEcccc
Q psy4246         192 FAEEYQKKFRSLNILVLNAGV  212 (328)
Q Consensus       192 ~~~~~~~~~g~id~lvnnAg~  212 (328)
                      +++++......=.+++..+++
T Consensus        78 vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          78 IAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHHHHSCTTCEEEECCSC
T ss_pred             hhhhhhccccccccccccccc
Confidence            888877665554555555554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.59  E-value=0.13  Score=38.40  Aligned_cols=103  Identities=15%  Similarity=0.047  Sum_probs=59.0

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHHHhhC--CCCeEEEE-EcccCCHHHHHHHHHHHHHh
Q psy4246         124 YNAIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEK--PSAQCIAM-ELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~-~~Dls~~~~v~~~~~~~~~~  199 (328)
                      |.+.|.|+ |.+|.++|..|+.++ +++++++.+++..+.....+....  .+...... .-|..+              
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~--------------   66 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD--------------   66 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG--------------
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH--------------
Confidence            35666686 999999999999888 489999998877665555553210  01122122 222221              


Q ss_pred             cCCccEEEEccccCCCCCCCChhHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q psy4246         200 FRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG  249 (328)
Q Consensus       200 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  249 (328)
                      ...-|++|.+||....... +.   ...+..|.    .+.+.+.+.+.+.
T Consensus        67 ~~~advvvitag~~~~~~~-~r---~dl~~~N~----~i~~~i~~~i~k~  108 (142)
T d1uxja1          67 TANSDVIVVTSGAPRKPGM-SR---EDLIKVNA----DITRACISQAAPL  108 (142)
T ss_dssp             GTTCSEEEECCSCC-------------CHHHHH----HHHHHHHHHHGGG
T ss_pred             hcCCCEEEEeeeccCCcCc-ch---hHHHhHHH----HHHHHHHHHHhcc
Confidence            1357999999998532211 11   23334454    3566666666653

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.55  E-value=0.24  Score=42.07  Aligned_cols=77  Identities=16%  Similarity=0.120  Sum_probs=52.9

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++||+||-.|++.|+   ++..+++.|+ +|+.++.++. ...+.+.+....-..++.++..|+.+.+.          .
T Consensus        32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~----------~   97 (316)
T d1oria_          32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL----------P   97 (316)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC----------S
T ss_pred             CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc----------c
Confidence            479999999998885   5677888897 6888987753 44443333333334578999998876531          1


Q ss_pred             cCCccEEEEccc
Q psy4246         200 FRSLNILVLNAG  211 (328)
Q Consensus       200 ~g~id~lvnnAg  211 (328)
                      ..++|+++..--
T Consensus        98 ~~~~D~ivs~~~  109 (316)
T d1oria_          98 VEKVDIIISEWM  109 (316)
T ss_dssp             SSCEEEEEECCC
T ss_pred             cceeEEEeeeee
Confidence            257899887643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.49  E-value=0.3  Score=37.84  Aligned_cols=77  Identities=21%  Similarity=0.139  Sum_probs=56.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +|.+||=.|+++|   .++..|++.+.+|+.++.+++.++.+.+.+....-..++.++.+|..          ++.....
T Consensus        33 ~g~~VLDiGcGsG---~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~----------~~~~~~~   99 (186)
T d1l3ia_          33 KNDVAVDVGCGTG---GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP----------EALCKIP   99 (186)
T ss_dssp             TTCEEEEESCTTS---HHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH----------HHHTTSC
T ss_pred             CCCEEEEEECCeE---cccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh----------hcccccC
Confidence            5788988888877   45566778888999999999988888777766533358889998852          1222346


Q ss_pred             CccEEEEccc
Q psy4246         202 SLNILVLNAG  211 (328)
Q Consensus       202 ~id~lvnnAg  211 (328)
                      .+|.++.+.+
T Consensus       100 ~~D~v~~~~~  109 (186)
T d1l3ia_         100 DIDIAVVGGS  109 (186)
T ss_dssp             CEEEEEESCC
T ss_pred             CcCEEEEeCc
Confidence            7999987654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.47  E-value=0.11  Score=37.20  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      .|.++|.|| |-||.++|..|++.|.+|.++.|...
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence            367888887 78999999999999999999988653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.47  E-value=0.15  Score=36.26  Aligned_cols=82  Identities=16%  Similarity=0.085  Sum_probs=57.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .+.++.|.|| |=+|+-++....+.|.+|++.+.+.+.-..          ...-.++..|..|.+.+.++....     
T Consensus        10 ~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~----------~va~~~i~~~~~d~~~l~~~~~~~-----   73 (111)
T d1kjqa2          10 AATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM----------HVAHRSHVINMLDGDALRRVVELE-----   73 (111)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG----------GGSSEEEECCTTCHHHHHHHHHHH-----
T ss_pred             CCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchh----------hcCCeEEECCCCCHHHHHHHHHhh-----
Confidence            3457889985 689999999999999999999987653111          112246789999999988887754     


Q ss_pred             CccEEEEccccCCCCCCCChhHHH
Q psy4246         202 SLNILVLNAGVFGLGFSHTEDGFE  225 (328)
Q Consensus       202 ~id~lvnnAg~~~~~~~~~~~~~~  225 (328)
                      ++|++..      .++.++.+-++
T Consensus        74 ~~DviT~------E~EnI~~~~L~   91 (111)
T d1kjqa2          74 KPHYIVP------EIEAIATDMLI   91 (111)
T ss_dssp             CCSEEEE------CSSCSCHHHHH
T ss_pred             CCceEEE------EecCcCHHHHH
Confidence            6788853      23445554443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.026  Score=43.11  Aligned_cols=34  Identities=21%  Similarity=0.112  Sum_probs=30.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDK  159 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~  159 (328)
                      +|+|.|+ |.||..++..|++.|++|.+++|+.+.
T Consensus         2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            4778888 999999999999999999999998653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=93.28  E-value=0.082  Score=40.97  Aligned_cols=78  Identities=10%  Similarity=-0.035  Sum_probs=53.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhC-----------CCCeEEEEEcccCCHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEK-----------PSAQCIAMELNLCRLKSVK  190 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dls~~~~v~  190 (328)
                      .|++||..|++.|   ..+..||++|++|+.++.++..++.+.+......           .+....++.+|..+.....
T Consensus        20 ~~~rvLd~GCG~G---~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~   96 (201)
T d1pjza_          20 PGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   96 (201)
T ss_dssp             TTCEEEETTTCCS---HHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCEEEEecCcCC---HHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence            6889999999776   4777999999999999999888777665553221           0234566777776644211


Q ss_pred             HHHHHHHHhcCCccEEEEccc
Q psy4246         191 KFAEEYQKKFRSLNILVLNAG  211 (328)
Q Consensus       191 ~~~~~~~~~~g~id~lvnnAg  211 (328)
                      .         ...|+++....
T Consensus        97 ~---------~~~D~i~~~~~  108 (201)
T d1pjza_          97 I---------GHCAAFYDRAA  108 (201)
T ss_dssp             H---------HSEEEEEEESC
T ss_pred             c---------cceeEEEEEee
Confidence            1         25677765443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.27  E-value=0.42  Score=35.68  Aligned_cols=79  Identities=10%  Similarity=0.121  Sum_probs=54.4

Q ss_pred             CCCCceEEEcCCCCC-ccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         120 DLSNYNAIVTGANTG-IGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       120 ~l~~k~~lITGas~G-IG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      +++|+.+|=.|+++| +|.    ..+.+|+ +|+.++.+.+..+.+.+.+.......++.+++.|+.+      ++   .
T Consensus        12 ~~~g~~vlDl~~GtG~~~i----ea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~------~l---~   78 (152)
T d2esra1          12 YFNGGRVLDLFAGSGGLAI----EAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER------AI---D   78 (152)
T ss_dssp             CCCSCEEEEETCTTCHHHH----HHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH------HH---H
T ss_pred             hCCCCeEEEcCCccCHHHH----HHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc------cc---c
Confidence            578999996666655 444    4567887 7999999988877766666554334578999988532      22   2


Q ss_pred             HhcCCccEEEEccc
Q psy4246         198 KKFRSLNILVLNAG  211 (328)
Q Consensus       198 ~~~g~id~lvnnAg  211 (328)
                      ...++.|+++.+.-
T Consensus        79 ~~~~~fDiIf~DPP   92 (152)
T d2esra1          79 CLTGRFDLVFLDPP   92 (152)
T ss_dssp             HBCSCEEEEEECCS
T ss_pred             ccccccceeEechh
Confidence            23467999987653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.04  E-value=0.034  Score=43.93  Aligned_cols=40  Identities=18%  Similarity=0.086  Sum_probs=33.6

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAI  164 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~  164 (328)
                      +.+.|.|| |-.|.++|..|++.|++|.+.+|+++..+...
T Consensus         8 ~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~   47 (189)
T d1n1ea2           8 NKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVN   47 (189)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHH
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Confidence            46888888 56999999999999999999999987665543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.85  E-value=0.1  Score=37.80  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=29.1

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      |.++|.|| |-||.++|..|++.|.+|.++.+..
T Consensus        24 ~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence            67888887 7899999999999999999998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.84  E-value=0.046  Score=39.83  Aligned_cols=35  Identities=29%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      ++|.++|.|| |-+|.++|..|++.|.+|.++.+..
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence            5678888876 7999999999999999999998754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.79  E-value=0.082  Score=41.79  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=35.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      +..+.||++.|.|. |.||+.+|+.|..-|++|+..++..
T Consensus        44 ~~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          44 AARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             ceeeeCceEEEecc-ccccccceeeeeccccceeeccCcc
Confidence            46799999999987 8999999999999999999998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.14  Score=37.11  Aligned_cols=33  Identities=27%  Similarity=0.274  Sum_probs=29.4

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      |.++|.|| |-||.++|..|++.|.+|.++.|..
T Consensus        23 k~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence            67888888 5799999999999999999998864

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=92.62  E-value=0.32  Score=40.33  Aligned_cols=78  Identities=17%  Similarity=0.181  Sum_probs=53.1

Q ss_pred             ceEEEcCCCCC-ccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         124 YNAIVTGANTG-IGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       124 k~~lITGas~G-IG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      ++++-.|+++| |+.+++ .  ...++|++++.+++.++-+........-..++.+...|+.+.         ....+++
T Consensus       112 ~~vld~g~GsG~i~~~la-~--~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~---------~~~~~~~  179 (271)
T d1nv8a_         112 KTVADIGTGSGAIGVSVA-K--FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---------FKEKFAS  179 (271)
T ss_dssp             CEEEEESCTTSHHHHHHH-H--HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---------GGGGTTT
T ss_pred             cEEEEeeeeeehhhhhhh-h--cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc---------cccccCc
Confidence            35565555555 444443 2  356899999999998877766665543345777888888643         2334578


Q ss_pred             ccEEEEccccC
Q psy4246         203 LNILVLNAGVF  213 (328)
Q Consensus       203 id~lvnnAg~~  213 (328)
                      +|++|.|.-+.
T Consensus       180 fDlIVsNPPYI  190 (271)
T d1nv8a_         180 IEMILSNPPYV  190 (271)
T ss_dssp             CCEEEECCCCB
T ss_pred             ccEEEEccccc
Confidence            99999998875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.60  E-value=0.05  Score=39.57  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=31.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      .+|.++|.|| |-+|.++|..|+++|.+|.++.+...
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence            4678888887 79999999999999999999988653

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=92.40  E-value=0.044  Score=43.40  Aligned_cols=39  Identities=18%  Similarity=0.080  Sum_probs=34.6

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      +.++.||++.|.|. |.||+.+|+.+...|.+|+..++..
T Consensus        42 ~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~   80 (191)
T d1gdha1          42 GEKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHR   80 (191)
T ss_dssp             BCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cceecccceEEeec-ccchHHHHHHHHhhccccccccccc
Confidence            45789999999987 7999999999999999999988754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.39  E-value=0.21  Score=40.37  Aligned_cols=75  Identities=11%  Similarity=0.006  Sum_probs=56.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      ++++||=.|++.|   .++..|+++|++|+.++.+++-++.+.+.+...  +.++.++..|+.+...           -+
T Consensus        41 ~~~~iLDiGcGtG---~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~--~~~i~~~~~d~~~l~~-----------~~  104 (251)
T d1wzna1          41 EVRRVLDLACGTG---IPTLELAERGYEVVGLDLHEEMLRVARRKAKER--NLKIEFLQGDVLEIAF-----------KN  104 (251)
T ss_dssp             CCCEEEEETCTTC---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCCEEEESCGGGCCC-----------CS
T ss_pred             CCCEEEEeCCCCC---ccchhhcccceEEEEEeeccccccccccccccc--cccchheehhhhhccc-----------cc
Confidence            5678999999876   456789999999999999988777666665554  4578899999876431           14


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      ..|++++.-+.
T Consensus       105 ~fD~I~~~~~~  115 (251)
T d1wzna1         105 EFDAVTMFFST  115 (251)
T ss_dssp             CEEEEEECSSG
T ss_pred             ccchHhhhhhh
Confidence            68988875443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.37  E-value=0.15  Score=36.54  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=29.8

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      .|.++|.|| |-||.++|..|++.|.+|.++.|..
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            467888887 7899999999999999999998854

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=92.21  E-value=0.066  Score=43.29  Aligned_cols=34  Identities=32%  Similarity=0.409  Sum_probs=29.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRS  156 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~  156 (328)
                      +.|.|+|.|| |=.|..+|..|+++|++|.++.|+
T Consensus         5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGS-GVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3456888887 677999999999999999999985

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.20  E-value=0.15  Score=36.41  Aligned_cols=33  Identities=24%  Similarity=0.100  Sum_probs=28.6

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      |.++|.|| |-+|.++|..|++.|.+|.++.|.+
T Consensus        22 ~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence            56777776 7899999999999999999998864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.06  E-value=0.38  Score=33.09  Aligned_cols=71  Identities=11%  Similarity=0.076  Sum_probs=45.0

Q ss_pred             CCceEEEcCCCCCcc-HHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIG-FETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG-~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +.|.+.+.|- +|+| .++|+.|.++|+.|...|+......   +.+.+.  |..+  ...+-  ++.           .
T Consensus         7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~---~~L~~~--Gi~v--~~g~~--~~~-----------i   65 (96)
T d1p3da1           7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVT---QRLAQA--GAKI--YIGHA--EEH-----------I   65 (96)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHH---HHHHHT--TCEE--EESCC--GGG-----------G
T ss_pred             hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhh---hHHHHC--CCeE--EECCc--ccc-----------C
Confidence            3456777766 5677 5679999999999999998754432   333333  4333  22221  111           1


Q ss_pred             CCccEEEEccccC
Q psy4246         201 RSLNILVLNAGVF  213 (328)
Q Consensus       201 g~id~lvnnAg~~  213 (328)
                      ...|.+|...++.
T Consensus        66 ~~~d~vV~S~AI~   78 (96)
T d1p3da1          66 EGASVVVVSSAIK   78 (96)
T ss_dssp             TTCSEEEECTTSC
T ss_pred             CCCCEEEECCCcC
Confidence            2579999998874

>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Hypothetical protein Yjq8 (Set2p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.93  E-value=0.066  Score=26.86  Aligned_cols=21  Identities=33%  Similarity=0.741  Sum_probs=17.4

Q ss_pred             ccccceecCCCcEEEEeCcCCc
Q psy4246          19 PGWEERVTADGCVYYVNHATEG   40 (328)
Q Consensus        19 ~~w~~~~~~~g~~~~~~~~~~~   40 (328)
                      +|||. +..+||..|+|..-++
T Consensus         1 pgwei-ihengrpmyynaq~q~   21 (27)
T d1e0na_           1 PGWEI-IHENGRPLYYNAEQKT   21 (27)
T ss_dssp             CCEEE-EESSSSEEEEETTTTE
T ss_pred             CCcee-eecCCceeeeehhhhh
Confidence            58987 6689999999988664

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.89  E-value=0.3  Score=38.89  Aligned_cols=81  Identities=12%  Similarity=0.033  Sum_probs=57.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.+||-.|+++|--.++..++...+.+|+.++.+++.++.+...+.... -.++.++..|..+..          ...+
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-~~n~~~~~~d~~~~~----------~~~~  143 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-IENVIFVCGDGYYGV----------PEFS  143 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-CCSEEEEESCGGGCC----------GGGC
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-ccccccccCchHHcc----------cccc
Confidence            57789999988876555555555556799999999888877777665542 346777777765321          1235


Q ss_pred             CccEEEEccccC
Q psy4246         202 SLNILVLNAGVF  213 (328)
Q Consensus       202 ~id~lvnnAg~~  213 (328)
                      ..|+++.+++..
T Consensus       144 ~fD~I~~~~~~~  155 (213)
T d1dl5a1         144 PYDVIFVTVGVD  155 (213)
T ss_dssp             CEEEEEECSBBS
T ss_pred             chhhhhhhccHH
Confidence            799999988763

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.86  E-value=0.13  Score=37.61  Aligned_cols=73  Identities=12%  Similarity=0.165  Sum_probs=54.4

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEe-eCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCc
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSL  203 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~i  203 (328)
                      .+.|.|++|-+|+++++.+.+.|+.++.. +++...          ......   +-.|+|.++.+.+.++.+.+.  ++
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~----------~~~~~D---VvIDFS~p~~~~~~l~~~~~~--~~   66 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE----------ELDSPD---VVIDFSSPEALPKTVDLCKKY--RA   66 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE----------ECSCCS---EEEECSCGGGHHHHHHHHHHH--TC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH----------HhccCC---EEEEecCHHHHHHHHHHHHhc--CC
Confidence            48899999999999999999999987653 444321          011223   567999999999999988776  56


Q ss_pred             cEEEEcccc
Q psy4246         204 NILVLNAGV  212 (328)
Q Consensus       204 d~lvnnAg~  212 (328)
                      .+|+-..|+
T Consensus        67 p~ViGTTG~   75 (128)
T d1vm6a3          67 GLVLGTTAL   75 (128)
T ss_dssp             EEEECCCSC
T ss_pred             CEEEEcCCC
Confidence            677766664

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=91.81  E-value=0.09  Score=39.62  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=33.8

Q ss_pred             EEEcCCCCCccHHHHHHHHHCC-CeEEEeeCChhHHHHHHHHH
Q psy4246         126 AIVTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKI  167 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~G-a~Vi~~~r~~~~~~~~~~~l  167 (328)
                      +.+.|+ |-+|.++++.|.+.| .+|++.+|+.++.+.+.++.
T Consensus         3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~   44 (152)
T d1yqga2           3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL   44 (152)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT
T ss_pred             EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc
Confidence            556666 899999999999888 89999999998877665543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.70  E-value=1.2  Score=37.54  Aligned_cols=83  Identities=14%  Similarity=0.060  Sum_probs=54.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhh-CCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      +++.||=..+.+|   .++..++..|++|+.++.+...++.+.+.+... ....++.++..|+.      ++++...+.-
T Consensus       132 ~~~rVLdlf~~tG---~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~------~~l~~~~~~~  202 (309)
T d2igta1         132 RPLKVLNLFGYTG---VASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM------KFIQREERRG  202 (309)
T ss_dssp             SCCEEEEETCTTC---HHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH------HHHHHHHHHT
T ss_pred             CCCeEEEecCCCc---HHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH------HhHHHHhhcC
Confidence            4677875554443   123345678999999999988877766655432 22346888888863      3445555555


Q ss_pred             CCccEEEEccccC
Q psy4246         201 RSLNILVLNAGVF  213 (328)
Q Consensus       201 g~id~lvnnAg~~  213 (328)
                      .+.|++|.+.=.+
T Consensus       203 ~~fD~IilDPP~f  215 (309)
T d2igta1         203 STYDIILTDPPKF  215 (309)
T ss_dssp             CCBSEEEECCCSE
T ss_pred             CCCCEEEECCCcc
Confidence            7899999986543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.068  Score=42.34  Aligned_cols=31  Identities=23%  Similarity=0.190  Sum_probs=27.7

Q ss_pred             ceEEEcCCCCCccH-----HHHHHHHHCCCeEEEee
Q psy4246         124 YNAIVTGANTGIGF-----ETARSLALHGCRVILAC  154 (328)
Q Consensus       124 k~~lITGas~GIG~-----a~a~~la~~Ga~Vi~~~  154 (328)
                      |.++|||.+.|.|+     .+|+.|+++|.+|.+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            78999999999998     45889999999999986

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.64  E-value=0.31  Score=38.95  Aligned_cols=79  Identities=10%  Similarity=0.045  Sum_probs=58.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.+||..|+++|--.++.-.|+  |.+|+.+.++++-.+.+.+.+... .-.++.++..|..+-          ....+
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~-g~~nv~~~~gd~~~g----------~~~~~  144 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERA-GVKNVHVILGDGSKG----------FPPKA  144 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHT-TCCSEEEEESCGGGC----------CGGGC
T ss_pred             ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHc-CCceeEEEECccccC----------CcccC
Confidence            57789999998887777776666  577999999977666665555544 246899999998641          12236


Q ss_pred             CccEEEEccccC
Q psy4246         202 SLNILVLNAGVF  213 (328)
Q Consensus       202 ~id~lvnnAg~~  213 (328)
                      +.|.++.++++.
T Consensus       145 pfD~Iiv~~a~~  156 (215)
T d1jg1a_         145 PYDVIIVTAGAP  156 (215)
T ss_dssp             CEEEEEECSBBS
T ss_pred             cceeEEeecccc
Confidence            899999988874

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.59  E-value=0.055  Score=44.61  Aligned_cols=34  Identities=26%  Similarity=0.247  Sum_probs=28.6

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      +|+|+|.|| |-=|+..|..|+++|++|.++.++.
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            588999987 4557899999999999999998653

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.067  Score=49.21  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=29.8

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeC
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGC-RVILACR  155 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r  155 (328)
                      .|.+..|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        22 ~L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~   57 (529)
T d1yova1          22 ALESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDG   57 (529)
T ss_dssp             HHHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECC
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcC
Confidence            367778999987 7999999999999996 7888765

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.51  E-value=0.093  Score=39.63  Aligned_cols=41  Identities=12%  Similarity=0.222  Sum_probs=33.5

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHH
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKI  167 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l  167 (328)
                      +.|.| .|-+|.++++.|.+.|++|++.+|+.++.+++.+++
T Consensus         3 Ig~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~   43 (152)
T d2ahra2           3 IGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL   43 (152)
T ss_dssp             EEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH
T ss_pred             EEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc
Confidence            44454 488999999999999999999999988877665554

>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 3, APBB3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.1  Score=26.01  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=16.0

Q ss_pred             CCCCCeeeeeCCCcEEEEeccCc
Q psy4246          58 LPLGWEKSVSEDGKITFYNKDTH   80 (328)
Q Consensus        58 lp~gw~~~~~~~g~~yy~n~~~~   80 (328)
                      ||+||++..+..| .||-...+.
T Consensus         2 LPpGW~~i~D~ag-~YyWHiPtG   23 (26)
T d2ysca1           2 LPPGWRKIHDAAG-TYYWHVPSG   23 (26)
T ss_dssp             CCTTEEEEEETTE-EEEEESSSC
T ss_pred             cCccceeeeccCc-eEEEeccCC
Confidence            7999999999764 565554444

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.37  E-value=0.21  Score=36.03  Aligned_cols=32  Identities=34%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCC
Q psy4246         124 YNAIVTGANTGIGFETARSLALHGCRVILACRS  156 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~  156 (328)
                      |.++|.|| |-||.++|..|.+.|.+|.++.|+
T Consensus        21 ~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            56778877 789999999999999999999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.33  E-value=0.35  Score=34.59  Aligned_cols=35  Identities=26%  Similarity=0.100  Sum_probs=30.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      ..+.++|.|| |-||.++|..|++.|.+|.++.+..
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence            3467888887 7999999999999999999988754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.28  E-value=0.06  Score=41.91  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=29.0

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCCh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGC-RVILACRSL  157 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~  157 (328)
                      +|+|+|.|| |-.|...|..|+++|+ .|.++.+..
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            577888888 7889999999999998 498888764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.25  E-value=0.066  Score=38.82  Aligned_cols=34  Identities=38%  Similarity=0.406  Sum_probs=29.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      +|.++|.|| |-+|.++|..|++.|.+|.++.+.+
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence            467888877 7999999999999999999998764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.10  E-value=0.38  Score=37.84  Aligned_cols=75  Identities=11%  Similarity=0.005  Sum_probs=55.6

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +.+||=.|++.|.   ++..|++.|++|+.++.+.+.++.+.+.....  +.++..+..|..+..          ...+.
T Consensus        38 ~~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~--~~~~~~~~~d~~~l~----------~~~~~  102 (226)
T d1ve3a1          38 RGKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKSR--ESNVEFIVGDARKLS----------FEDKT  102 (226)
T ss_dssp             CCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCCEEEECCTTSCC----------SCTTC
T ss_pred             CCEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhccc--ccccccccccccccc----------ccCcC
Confidence            4568999998875   77789999999999999988877776665554  456777888877632          11247


Q ss_pred             ccEEEEcccc
Q psy4246         203 LNILVLNAGV  212 (328)
Q Consensus       203 id~lvnnAg~  212 (328)
                      .|+++.+..+
T Consensus       103 fD~I~~~~~l  112 (226)
T d1ve3a1         103 FDYVIFIDSI  112 (226)
T ss_dssp             EEEEEEESCG
T ss_pred             ceEEEEecch
Confidence            8999887554

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.08  E-value=1.4  Score=33.77  Aligned_cols=82  Identities=11%  Similarity=0.144  Sum_probs=56.1

Q ss_pred             CCCCCceEEEcC-CCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         119 RDLSNYNAIVTG-ANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       119 ~~l~~k~~lITG-as~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      ..++|+.+|=-. |+|++|.+    .+.+|| +|+.++.+.+..+.+.+.+.......++.++..|+.      ++++..
T Consensus        38 ~~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~------~~l~~~  107 (182)
T d2fhpa1          38 PYFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN------RALEQF  107 (182)
T ss_dssp             SCCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH------HHHHHH
T ss_pred             HhcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch------hhhhhh
Confidence            357889988444 44556664    557898 599999998887777666655433457888888874      344444


Q ss_pred             HHhcCCccEEEEcc
Q psy4246         197 QKKFRSLNILVLNA  210 (328)
Q Consensus       197 ~~~~g~id~lvnnA  210 (328)
                      .....+.|+++...
T Consensus       108 ~~~~~~fDlIflDP  121 (182)
T d2fhpa1         108 YEEKLQFDLVLLDP  121 (182)
T ss_dssp             HHTTCCEEEEEECC
T ss_pred             cccCCCcceEEech
Confidence            44445799998655

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.90  E-value=0.098  Score=37.60  Aligned_cols=36  Identities=17%  Similarity=0.236  Sum_probs=31.6

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      ..+|.++|.|| |-||.++|..|++.|.+|.++.|.+
T Consensus        20 ~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence            35788998887 7899999999999999999998864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=90.87  E-value=0.084  Score=41.19  Aligned_cols=36  Identities=28%  Similarity=0.229  Sum_probs=31.5

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      -+.|.|+|.|| |--|.+.|..|+++|++|.+..+..
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence            45788999998 6778999999999999999998864

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=90.84  E-value=0.08  Score=42.07  Aligned_cols=39  Identities=23%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      +.+|.||++.|.|. |.||+.+|+.|..-|++|+..++..
T Consensus        40 ~~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          40 GKELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             CCCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccccceeeeeeec-ccccccccccccccceeeeccCCcc
Confidence            45789999999988 7899999999999999999998754

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.79  E-value=0.51  Score=35.57  Aligned_cols=83  Identities=13%  Similarity=0.158  Sum_probs=51.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC---CHHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC---RLKSVKKFAEEYQK  198 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls---~~~~v~~~~~~~~~  198 (328)
                      +|+.+.|.+.+||.|--++-.+...|.++.-  -+++.    .++|.+..|.....--.+|++   +.+...++++.+.+
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~--l~~~t----~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~   75 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLAT--LEEKT----IEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ   75 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEECC--CCHHH----HHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccCC--CCHHH----HHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHc
Confidence            5788888889999999999999999966643  33332    333333333222112234443   55666777766554


Q ss_pred             hcCCccEEEEccc
Q psy4246         199 KFRSLNILVLNAG  211 (328)
Q Consensus       199 ~~g~id~lvnnAg  211 (328)
                      . +.+|.++....
T Consensus        76 d-~~vd~v~v~~~   87 (163)
T d2csua3          76 D-PNVDMLIAICV   87 (163)
T ss_dssp             S-TTCSEEEEEEE
T ss_pred             C-CCcCEEEEeec
Confidence            3 67898765544

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=90.71  E-value=1.1  Score=31.62  Aligned_cols=82  Identities=12%  Similarity=0.115  Sum_probs=56.5

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      ||+|||.=-..-+-..+...|-+.|++|+..+.+...   +.+.+.+.  ...+.++..++-+.+. -++++++++....
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~---al~~~~~~--~~dliilD~~mp~~~G-~e~~~~ir~~~~~   74 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGRE---AVEKYKEL--KPDIVTMDITMPEMNG-IDAIKEIMKIDPN   74 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHH---HHHHHHHH--CCSEEEEECSCGGGCH-HHHHHHHHHHCTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHH---HHHHHHhc--cCCEEEEecCCCCCCH-HHHHHHHHHhCCC
Confidence            7889998888888889999999999999866655433   33334433  3356666666555544 4567777777777


Q ss_pred             ccEEEEcc
Q psy4246         203 LNILVLNA  210 (328)
Q Consensus       203 id~lvnnA  210 (328)
                      +-+++..+
T Consensus        75 ~pvi~ls~   82 (118)
T d1u0sy_          75 AKIIVCSA   82 (118)
T ss_dssp             CCEEEEEC
T ss_pred             CcEEEEEc
Confidence            88777653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.68  E-value=0.15  Score=38.25  Aligned_cols=45  Identities=16%  Similarity=0.158  Sum_probs=33.2

Q ss_pred             hhccCCCCCCceEEEc-CCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         114 QILHGRDLSNYNAIVT-GANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       114 ~~~~~~~l~~k~~lIT-Gas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      +.+......++.++|. .+++-||.++|..|+++|++|.++.+...
T Consensus        30 d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          30 QVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             HHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             HHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            3444444445555554 45688999999999999999999988653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.60  E-value=0.25  Score=35.62  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      .|.++|.|| |-||.++|..|++.|.+|.++.|++.
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccc
Confidence            467888887 78999999999999999999988653

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.25  Score=41.50  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             CCccHHHHHHHHHCCCeEEEeeCC
Q psy4246         133 TGIGFETARSLALHGCRVILACRS  156 (328)
Q Consensus       133 ~GIG~a~a~~la~~Ga~Vi~~~r~  156 (328)
                      |..|.++|+.|..+||.|+++.+.
T Consensus        46 Gk~G~alA~~~~~~Ga~V~li~g~   69 (290)
T d1p9oa_          46 GRRGATSAEAFLAAGYGVLFLYRA   69 (290)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             hHHHHHHHHHHHHcCCEEEEEecC
Confidence            347999999999999999998643

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=90.43  E-value=1.3  Score=37.32  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=55.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .+|++||=.++..| |.++  .++..|++|+.++.++..++.+.+.+.... -.++.++..|+.+      +.+......
T Consensus       144 ~~g~rVLDl~~gtG-~~s~--~~a~g~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~~i~~d~~~------~~~~~~~~~  213 (318)
T d1wxxa2         144 FRGERALDVFSYAG-GFAL--HLALGFREVVAVDSSAEALRRAEENARLNG-LGNVRVLEANAFD------LLRRLEKEG  213 (318)
T ss_dssp             CCEEEEEEETCTTT-HHHH--HHHHHEEEEEEEESCHHHHHHHHHHHHHTT-CTTEEEEESCHHH------HHHHHHHTT
T ss_pred             hCCCeeeccCCCCc-HHHH--HHHhcCCcEEeecchHHHHHHHHHHHHHcC-CCCcceeeccHHH------HhhhhHhhh
Confidence            47889986666544 2333  345557799999999988877766665432 2368888888743      233344444


Q ss_pred             CCccEEEEccccC
Q psy4246         201 RSLNILVLNAGVF  213 (328)
Q Consensus       201 g~id~lvnnAg~~  213 (328)
                      .+.|++|.+.-.+
T Consensus       214 ~~fD~Vi~DpP~~  226 (318)
T d1wxxa2         214 ERFDLVVLDPPAF  226 (318)
T ss_dssp             CCEEEEEECCCCS
T ss_pred             cCCCEEEEcCCcc
Confidence            6899999998654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.29  E-value=0.14  Score=39.87  Aligned_cols=37  Identities=24%  Similarity=0.207  Sum_probs=33.6

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      .+.||++.|.|. |.||+.+++.+..-|++|+..+|..
T Consensus        39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCceEEEecc-ccccccceeeeeccccccccccccc
Confidence            489999999998 5699999999999999999999864

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.00  E-value=0.17  Score=40.49  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=29.9

Q ss_pred             CceEEEcCCCCCccH-----HHHHHHHHCCCeEEEeeCC
Q psy4246         123 NYNAIVTGANTGIGF-----ETARSLALHGCRVILACRS  156 (328)
Q Consensus       123 ~k~~lITGas~GIG~-----a~a~~la~~Ga~Vi~~~r~  156 (328)
                      ||++.|+|+-||.|+     .+|..|+++|.+|+++|-+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            689999999999998     4578899999999999865

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.99  E-value=0.2  Score=39.54  Aligned_cols=36  Identities=22%  Similarity=0.058  Sum_probs=29.9

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHH
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKAND  162 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~  162 (328)
                      +.|. |.|-+|+.+|..|++.|++|++.|.+.+..+.
T Consensus         3 I~Vi-GlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~   38 (202)
T d1mv8a2           3 ISIF-GLGYVGAVCAGCLSARGHEVIGVDVSSTKIDL   38 (202)
T ss_dssp             EEEE-CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             EEEE-CCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence            4455 55899999999999999999999998766443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.91  E-value=0.13  Score=39.85  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=28.3

Q ss_pred             eEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         125 NAIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      .|.|.|+ |..|.++|..|++.|.+|.+.+|..+
T Consensus         2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~   34 (180)
T d1txga2           2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD   34 (180)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            3567777 78999999999999999999998654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=89.79  E-value=0.09  Score=43.23  Aligned_cols=31  Identities=29%  Similarity=0.164  Sum_probs=27.3

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      |+|.|| |-.|.++|..|+++|.+|++++++.
T Consensus         7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            777877 7789999999999999999998854

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=89.78  E-value=0.13  Score=42.50  Aligned_cols=36  Identities=17%  Similarity=0.288  Sum_probs=32.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILAC  154 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~  154 (328)
                      +.+++||+++|.| .|-+|..+|+.|.+.|++|+.++
T Consensus        31 ~~~l~g~~v~IQG-fGnVG~~~a~~L~e~Gakvvavs   66 (255)
T d1bgva1          31 NDTLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLS   66 (255)
T ss_dssp             TCCSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Confidence            4579999999999 58899999999999999998764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=89.75  E-value=0.79  Score=34.89  Aligned_cols=78  Identities=12%  Similarity=0.119  Sum_probs=46.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      +|+.+|=.|+++|   .++..++.+|++|+.++.++...+.+.+.+....-..++....+|        .+.........
T Consensus        41 ~g~~vLDl~~G~G---~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d--------~~~~~~~~~~~  109 (171)
T d1ws6a1          41 RRGRFLDPFAGSG---AVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVE--------VFLPEAKAQGE  109 (171)
T ss_dssp             TCCEEEEETCSSC---HHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHH--------HHHHHHHHTTC
T ss_pred             CCCeEEEeccccc---hhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehh--------cccccccccCC
Confidence            5677775555444   234456678999999999998877766666554223333332222        12223333445


Q ss_pred             CccEEEEcc
Q psy4246         202 SLNILVLNA  210 (328)
Q Consensus       202 ~id~lvnnA  210 (328)
                      +.|+++.+.
T Consensus       110 ~fD~If~DP  118 (171)
T d1ws6a1         110 RFTVAFMAP  118 (171)
T ss_dssp             CEEEEEECC
T ss_pred             ccceeEEcc
Confidence            799998775

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.73  E-value=0.21  Score=36.93  Aligned_cols=76  Identities=13%  Similarity=0.090  Sum_probs=52.1

Q ss_pred             eEEEcCCCCCccHHHHHHHHHC-CCeEEE-eeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         125 NAIVTGANTGIGFETARSLALH-GCRVIL-ACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       125 ~~lITGas~GIG~a~a~~la~~-Ga~Vi~-~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      ++.|.|++|-+|+++++.+.+. +..++. +++.. .+..    +...  +..   +..|+|.++.+.+.++.+.+.  +
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~-~~~~----~~~~--~~D---vvIDFS~p~~~~~~~~~~~~~--~   68 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD-PLSL----LTDG--NTE---VVIDFTHPDVVMGNLEFLIDN--G   68 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC-CTHH----HHTT--TCS---EEEECCCTTTHHHHHHHHHHT--T
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC-chhh----hccc--cCC---EEEEcccHHHHHHHHHHHHhc--C
Confidence            4789999999999999987765 566554 44432 2221    1111  222   568999999999999888764  5


Q ss_pred             ccEEEEcccc
Q psy4246         203 LNILVLNAGV  212 (328)
Q Consensus       203 id~lvnnAg~  212 (328)
                      +-+||-..|+
T Consensus        69 ~~~ViGTTG~   78 (135)
T d1yl7a1          69 IHAVVGTTGF   78 (135)
T ss_dssp             CEEEECCCCC
T ss_pred             CCEEEecccc
Confidence            6777755554

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.58  E-value=0.11  Score=37.03  Aligned_cols=34  Identities=21%  Similarity=0.207  Sum_probs=29.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      .|.++|.|| |-+|.++|..|++.|.+|.++.+.+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence            366777776 7999999999999999999998754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.25  E-value=0.5  Score=36.58  Aligned_cols=41  Identities=12%  Similarity=0.088  Sum_probs=33.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHH
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAI  164 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~  164 (328)
                      .-.++|.|| |-.|+..++.....|++|.+.|.+.+.++++.
T Consensus        29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVE   69 (183)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence            346778887 56788888888999999999999988766543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.18  E-value=0.17  Score=41.70  Aligned_cols=37  Identities=27%  Similarity=0.227  Sum_probs=31.5

Q ss_pred             CCceEEEcCCCCCccHHH-----HHHHHHCCCeEEEeeCChh
Q psy4246         122 SNYNAIVTGANTGIGFET-----ARSLALHGCRVILACRSLD  158 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~-----a~~la~~Ga~Vi~~~r~~~  158 (328)
                      .++.++|+.|=||.|+.+     |..|+++|.+|.+++.+..
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            466777887799999976     7899999999999998864

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=89.15  E-value=0.63  Score=37.30  Aligned_cols=76  Identities=11%  Similarity=-0.079  Sum_probs=53.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.+||-.|+++|-   ++..|++.+.+|+.+.++++..+.+.+.+ ..  ..++.++..|...-          ....+
T Consensus        70 ~g~~VLdIG~GsGy---~ta~La~l~~~V~aiE~~~~~~~~A~~~~-~~--~~nv~~~~~d~~~g----------~~~~~  133 (224)
T d1vbfa_          70 KGQKVLEIGTGIGY---YTALIAEIVDKVVSVEINEKMYNYASKLL-SY--YNNIKLILGDGTLG----------YEEEK  133 (224)
T ss_dssp             TTCEEEEECCTTSH---HHHHHHHHSSEEEEEESCHHHHHHHHHHH-TT--CSSEEEEESCGGGC----------CGGGC
T ss_pred             ccceEEEecCCCCH---HHHHHHHHhcccccccccHHHHHHHHHHH-hc--ccccccccCchhhc----------chhhh
Confidence            57789999988774   33457777889999999987766554433 33  35788888887531          11236


Q ss_pred             CccEEEEccccC
Q psy4246         202 SLNILVLNAGVF  213 (328)
Q Consensus       202 ~id~lvnnAg~~  213 (328)
                      +.|.++.++++.
T Consensus       134 pfD~Iiv~~a~~  145 (224)
T d1vbfa_         134 PYDRVVVWATAP  145 (224)
T ss_dssp             CEEEEEESSBBS
T ss_pred             hHHHHHhhcchh
Confidence            899999888763

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.13  E-value=0.16  Score=37.31  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      .+|.++|.|| |-+|.++|..|++.|.+|.++.+..
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeecc
Confidence            4678888887 7999999999999999999998754

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.97  E-value=2.5  Score=35.47  Aligned_cols=83  Identities=20%  Similarity=0.097  Sum_probs=55.8

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|++||=.|+..|.   ++..++..|+ +|+.++.++..++.+.+.+....-..++.++..|+.      .....+....
T Consensus       145 ~g~~VLDl~~g~G~---~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~------~~~~~~~~~~  215 (324)
T d2as0a2         145 PGDRVLDVFTYTGG---FAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF------EEMEKLQKKG  215 (324)
T ss_dssp             TTCEEEETTCTTTH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH------HHHHHHHHTT
T ss_pred             CCCeeecccCcccc---hhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh------hhhHHHHhcc
Confidence            47889877775432   2233456787 799999999888777666655432347788888764      2334444455


Q ss_pred             CCccEEEEccccC
Q psy4246         201 RSLNILVLNAGVF  213 (328)
Q Consensus       201 g~id~lvnnAg~~  213 (328)
                      .++|++|.++-.+
T Consensus       216 ~~fD~Vi~DpP~~  228 (324)
T d2as0a2         216 EKFDIVVLDPPAF  228 (324)
T ss_dssp             CCEEEEEECCCCS
T ss_pred             CCCCchhcCCccc
Confidence            6899999987654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.70  E-value=0.21  Score=37.39  Aligned_cols=35  Identities=14%  Similarity=0.117  Sum_probs=28.0

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHH
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKAN  161 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~  161 (328)
                      |-|.| .|-+|.++|+.|+++|++|++.+++..+..
T Consensus         3 IgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~   37 (152)
T d1i36a2           3 VGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPST   37 (152)
T ss_dssp             EEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHH
T ss_pred             EEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHH
Confidence            34444 489999999999999999999887765543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=88.35  E-value=0.16  Score=38.49  Aligned_cols=35  Identities=20%  Similarity=0.194  Sum_probs=29.2

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC--eEEEeeCCh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC--RVILACRSL  157 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga--~Vi~~~r~~  157 (328)
                      .||+|+|.|| |-+|.++|..|.+.|.  +|+++.+++
T Consensus         1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999998 5678999999999885  788887654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=88.32  E-value=0.88  Score=35.84  Aligned_cols=76  Identities=13%  Similarity=0.005  Sum_probs=54.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      ++.||=.|++.|+   .+..|+++|++|+.++.+++.++.+.+.+... ...++.++.+|..+..-          ..+.
T Consensus        16 ~~rVLDiGcG~G~---~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~-~~~~i~~~~~d~~~l~~----------~~~~   81 (231)
T d1vl5a_          16 NEEVLDVATGGGH---VANAFAPFVKKVVAFDLTEDILKVARAFIEGN-GHQQVEYVQGDAEQMPF----------TDER   81 (231)
T ss_dssp             CCEEEEETCTTCH---HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEECCC-CCCS----------CTTC
T ss_pred             cCEEEEecccCcH---HHHHHHHhCCEEEEEECCHHHHhhhhhccccc-ccccccccccccccccc----------cccc
Confidence            5789999988773   45678899999999999988777665555443 24578889998876420          1257


Q ss_pred             ccEEEEcccc
Q psy4246         203 LNILVLNAGV  212 (328)
Q Consensus       203 id~lvnnAg~  212 (328)
                      .|+++.+..+
T Consensus        82 fD~v~~~~~l   91 (231)
T d1vl5a_          82 FHIVTCRIAA   91 (231)
T ss_dssp             EEEEEEESCG
T ss_pred             cccccccccc
Confidence            8999887765

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.91  Score=36.24  Aligned_cols=82  Identities=12%  Similarity=0.057  Sum_probs=60.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCC----CCeEEEEEcccCCHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP----SAQCIAMELNLCRLKSVKKFAEEYQ  197 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dls~~~~v~~~~~~~~  197 (328)
                      .|..||-.|+++|--.++.-+++....+|+.++++++-++.+.+.+.....    ..++.++..|..+..          
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~----------  145 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY----------  145 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC----------
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc----------
Confidence            578999999999977777777887788999999998887777666654321    236777777865211          


Q ss_pred             HhcCCccEEEEccccC
Q psy4246         198 KKFRSLNILVLNAGVF  213 (328)
Q Consensus       198 ~~~g~id~lvnnAg~~  213 (328)
                      ...+..|.++.+++..
T Consensus       146 ~~~~~fD~I~~~~~~~  161 (224)
T d1i1na_         146 AEEAPYDAIHVGAAAP  161 (224)
T ss_dssp             GGGCCEEEEEECSBBS
T ss_pred             chhhhhhhhhhhcchh
Confidence            1235799999998864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.19  E-value=0.36  Score=36.64  Aligned_cols=41  Identities=20%  Similarity=0.102  Sum_probs=36.1

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhH
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK  159 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~  159 (328)
                      ...|.||+++|.|= |-+|+.+|++|...|++|+++..++-.
T Consensus        18 ~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~   58 (163)
T d1v8ba1          18 DFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPIC   58 (163)
T ss_dssp             CCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             CceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchh
Confidence            34689999999986 789999999999999999999998743

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.11  E-value=0.3  Score=39.20  Aligned_cols=35  Identities=29%  Similarity=0.300  Sum_probs=30.0

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      .+|.++|.|| |-.|...|..|+++|++|.++.++.
T Consensus        48 ~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecc
Confidence            6788999998 5568999999999999999998654

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.08  E-value=2.4  Score=30.93  Aligned_cols=87  Identities=13%  Similarity=0.166  Sum_probs=55.6

Q ss_pred             CCceEEEcCCC---CCccHHHHHHHHHCCCeEEEeeCChhHHH--HHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGAN---TGIGFETARSLALHGCRVILACRSLDKAN--DAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEY  196 (328)
Q Consensus       122 ~~k~~lITGas---~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  196 (328)
                      +-|.+.|.|+|   +..|..+++.|.+.|++|+.+........  .....+.+......+..+   +..++.+..+++++
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i---~vp~~~~~~~~~e~   94 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDL---FVKPKLTMEYVEQA   94 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEE---CSCHHHHHHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEE---EeCHHHHHHHHHHH
Confidence            56889999999   57999999999999999998875532211  001111111101222222   13567788888888


Q ss_pred             HHhcCCccEEEEccccC
Q psy4246         197 QKKFRSLNILVLNAGVF  213 (328)
Q Consensus       197 ~~~~g~id~lvnnAg~~  213 (328)
                      .+.  ++..++...|..
T Consensus        95 ~~~--g~k~v~~~~G~~  109 (139)
T d2d59a1          95 IKK--GAKVVWFQYNTY  109 (139)
T ss_dssp             HHH--TCSEEEECTTCC
T ss_pred             HHh--CCCEEEEecccc
Confidence            775  467888877754

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.95  E-value=1.2  Score=34.43  Aligned_cols=77  Identities=12%  Similarity=0.027  Sum_probs=54.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ++++.||=.|++.|  . .+..|+++|++|+.++.++..++.+........ -..+.+...|+.+..-           -
T Consensus        29 ~~~grvLDiGcG~G--~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~~~~d~~~~~~-----------~   93 (198)
T d2i6ga1          29 VAPGRTLDLGCGNG--R-NSLYLAANGYDVTAWDKNPASMANLERIKAAEG-LDNLQTDLVDLNTLTF-----------D   93 (198)
T ss_dssp             SCSCEEEEETCTTS--H-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CTTEEEEECCTTTCCC-----------C
T ss_pred             CCCCcEEEECCCCC--H-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhcc-ccchhhhheecccccc-----------c
Confidence            45667999998644  4 667899999999999999888776655544431 2357778888775431           1


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +..|+++.+.-+
T Consensus        94 ~~fD~I~~~~~~  105 (198)
T d2i6ga1          94 GEYDFILSTVVM  105 (198)
T ss_dssp             CCEEEEEEESCG
T ss_pred             ccccEEEEeeee
Confidence            468988876543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=87.91  E-value=0.18  Score=40.80  Aligned_cols=34  Identities=26%  Similarity=0.156  Sum_probs=28.3

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      .+.|+|.|| |--|..+|..|+++|.+|+++.++.
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            456888887 5568888999999999999998864

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=87.62  E-value=0.21  Score=40.80  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=31.5

Q ss_pred             CCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee
Q psy4246         119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILAC  154 (328)
Q Consensus       119 ~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~  154 (328)
                      .+|+||+++|-| .|-+|..+|+.|.+.|++|+.++
T Consensus        27 ~~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          27 GGIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             SCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEee
Confidence            479999999997 58999999999999999998765

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.44  E-value=0.27  Score=39.14  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=29.4

Q ss_pred             ceEEEcCCCCCccH-----HHHHHHHHCCCeEEEeeCCh
Q psy4246         124 YNAIVTGANTGIGF-----ETARSLALHGCRVILACRSL  157 (328)
Q Consensus       124 k~~lITGas~GIG~-----a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      |+|.|+++-||.|+     .+|..|+++|.+|.++|-+.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            78999999999998     45778999999999998653

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.16  E-value=0.86  Score=33.95  Aligned_cols=83  Identities=19%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCC----CCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKP----SAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      |-+.|- |-+|..+|++|++.|+.| +.+|+.++..+..++......    -.....+-..+.+.+.+......+.....
T Consensus         3 Ig~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~   80 (156)
T d2cvza2           3 VAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLR   80 (156)
T ss_dssp             EEEECC-STTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCC
T ss_pred             EEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcccccccc
Confidence            445555 889999999999988755 577877776665554421100    01222333445566777777777665554


Q ss_pred             CccEEEEcc
Q psy4246         202 SLNILVLNA  210 (328)
Q Consensus       202 ~id~lvnnA  210 (328)
                      +-.++|.+.
T Consensus        81 ~~~~iid~s   89 (156)
T d2cvza2          81 EGTYWVDAT   89 (156)
T ss_dssp             TTEEEEECS
T ss_pred             ccccccccc
Confidence            455555544

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.01  E-value=1  Score=38.09  Aligned_cols=77  Identities=19%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHh
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKK  199 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  199 (328)
                      ++||+||-.|++.|+   ++..++++|+ +|++++.++ .+..+.+.........++.++..|+.+..-          .
T Consensus        37 ~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~----------~  102 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL----------P  102 (328)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC----------S
T ss_pred             CCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC----------c
Confidence            579999999998874   5677888997 688888774 344444444444335678899998876421          1


Q ss_pred             cCCccEEEEccc
Q psy4246         200 FRSLNILVLNAG  211 (328)
Q Consensus       200 ~g~id~lvnnAg  211 (328)
                      ..++|+++...-
T Consensus       103 ~~~~D~i~se~~  114 (328)
T d1g6q1_         103 FPKVDIIISEWM  114 (328)
T ss_dssp             SSCEEEEEECCC
T ss_pred             ccceeEEEEEec
Confidence            246898887643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.65  E-value=0.73  Score=31.10  Aligned_cols=67  Identities=12%  Similarity=0.064  Sum_probs=43.2

Q ss_pred             EEEcCCCCCccH-HHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCcc
Q psy4246         126 AIVTGANTGIGF-ETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLN  204 (328)
Q Consensus       126 ~lITGas~GIG~-a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id  204 (328)
                      +-+.| -+|+|- ++|+.|.++|+.|...|+......   +.|.+.  |.++. ..-|..+              ....|
T Consensus         4 ihfiG-IgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t---~~L~~~--Gi~i~-~gh~~~~--------------i~~~d   62 (89)
T d1j6ua1           4 IHFVG-IGGIGMSAVALHEFSNGNDVYGSNIEETERT---AYLRKL--GIPIF-VPHSADN--------------WYDPD   62 (89)
T ss_dssp             EEEET-TTSHHHHHHHHHHHHTTCEEEEECSSCCHHH---HHHHHT--TCCEE-SSCCTTS--------------CCCCS
T ss_pred             EEEEe-ECHHHHHHHHHHHHhCCCeEEEEeCCCChhH---HHHHHC--CCeEE-eeecccc--------------cCCCC
Confidence            44444 467776 789999999999999998865433   334443  44432 1223222              13689


Q ss_pred             EEEEccccC
Q psy4246         205 ILVLNAGVF  213 (328)
Q Consensus       205 ~lvnnAg~~  213 (328)
                      +||...++.
T Consensus        63 ~vV~SsAI~   71 (89)
T d1j6ua1          63 LVIKTPAVR   71 (89)
T ss_dssp             EEEECTTCC
T ss_pred             EEEEecCcC
Confidence            999999884

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.60  E-value=0.3  Score=40.90  Aligned_cols=36  Identities=17%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEee
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILAC  154 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~  154 (328)
                      ..+|+||+++|-|- |-+|..+|+.|.+.|++|+.++
T Consensus        31 ~~~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vs   66 (293)
T d1hwxa1          31 TPGFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVG   66 (293)
T ss_dssp             CSSSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE
Confidence            45799999999987 7899999999999999998775

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=86.57  E-value=0.19  Score=41.78  Aligned_cols=35  Identities=26%  Similarity=0.256  Sum_probs=29.1

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      ..|.|+|.||+ --|...|..|+++|++|+++.++.
T Consensus        29 ~pkkV~IIGaG-~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAG-MAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCB-HHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence            44678899884 558999999999999999998754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.54  E-value=0.23  Score=36.05  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=29.7

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      .|.++|.|| |-||.++|..|++.|.+|.++.+..
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence            467888887 7899999999999999999997754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.40  E-value=0.24  Score=41.92  Aligned_cols=35  Identities=23%  Similarity=0.204  Sum_probs=28.9

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      +.|.|+|.|| |--|+.+|..|++.|.+|.++.++.
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCC
Confidence            3678999998 4457889999999999999998764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=86.07  E-value=0.22  Score=40.95  Aligned_cols=30  Identities=30%  Similarity=0.458  Sum_probs=25.9

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCC
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRS  156 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~  156 (328)
                      |+|.|| |=.|..+|..|+++|.+|+++.+.
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            677776 567999999999999999999874

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=85.49  E-value=0.24  Score=41.24  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=26.0

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCC-eEEEeeCC
Q psy4246         126 AIVTGANTGIGFETARSLALHGC-RVILACRS  156 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~  156 (328)
                      |+|.|| |-+|.++|..|+++|. +|++++++
T Consensus         4 ViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           4 IVIIGA-GIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            778887 6889999999999996 69999875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=85.29  E-value=1.7  Score=35.58  Aligned_cols=78  Identities=10%  Similarity=-0.005  Sum_probs=54.7

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.+||=.|++.|   .++..|+++ |++|+.++.++..++.+.+......-..++.++.+|..+...          ..
T Consensus        67 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~----------~~  133 (282)
T d2o57a1          67 RQAKGLDLGAGYG---GAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC----------ED  133 (282)
T ss_dssp             TTCEEEEETCTTS---HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS----------CT
T ss_pred             CCCEEEEeCCCCc---HHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccc----------cc
Confidence            5778998898766   356667665 899999999988776665555544334578999999876421          12


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +.+|+++.+-.+
T Consensus       134 ~sfD~V~~~~~l  145 (282)
T d2o57a1         134 NSYDFIWSQDAF  145 (282)
T ss_dssp             TCEEEEEEESCG
T ss_pred             cccchhhccchh
Confidence            578998876544

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.44  Score=37.06  Aligned_cols=39  Identities=13%  Similarity=-0.049  Sum_probs=34.2

Q ss_pred             CCCCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       118 ~~~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      +.++.++++.|.|. |.||..+|+.+..-|.+|+..++..
T Consensus        39 ~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          39 SFEARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             CCCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccccceEEEEeec-ccchhhhhhhcccccceEeeccccc
Confidence            34689999999966 8999999999999999999998754

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.02  E-value=0.8  Score=33.12  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=51.0

Q ss_pred             CCceEEEcCCCC-Ccc---------HHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHH
Q psy4246         122 SNYNAIVTGANT-GIG---------FETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKK  191 (328)
Q Consensus       122 ~~k~~lITGas~-GIG---------~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  191 (328)
                      ..|.+||.|++. -||         ...++.|.+.|++++++..|++....-.+      -..++.+..+   ..+.|.+
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d------~aD~lYfePl---t~e~v~~   76 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPE------MADATYIEPI---HWEVVRK   76 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGG------GSSEEECSCC---CHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChh------hcceeeeecC---CHHHHHH
Confidence            457888888863 444         46788999999999999988765321110      0345554444   4466666


Q ss_pred             HHHHHHHhcCCccEEEEcccc
Q psy4246         192 FAEEYQKKFRSLNILVLNAGV  212 (328)
Q Consensus       192 ~~~~~~~~~g~id~lvnnAg~  212 (328)
                      +++.-     ++|.++-..|.
T Consensus        77 Ii~~E-----~pd~il~~~GG   92 (127)
T d1a9xa3          77 IIEKE-----RPDAVLPTMGG   92 (127)
T ss_dssp             HHHHH-----CCSEEECSSSH
T ss_pred             HHHHh-----CcCCeEEEeee
Confidence            66542     78999877764

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=84.52  E-value=0.36  Score=40.50  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=23.0

Q ss_pred             ceEEEcCCCCCccH-----HHHHHHHHCCCeEEEeeCC
Q psy4246         124 YNAIVTGANTGIGF-----ETARSLALHGCRVILACRS  156 (328)
Q Consensus       124 k~~lITGas~GIG~-----a~a~~la~~Ga~Vi~~~r~  156 (328)
                      |.|||++|+.| |.     +++++|.++|++|..++..
T Consensus         1 kkili~~~GtG-GHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcH-HHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            45666655445 54     6889999999999877643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.50  E-value=0.28  Score=38.57  Aligned_cols=31  Identities=19%  Similarity=0.138  Sum_probs=26.4

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      |+|.|| |=-|..+|..|+++|.+|.++.++.
T Consensus         8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            788885 5558899999999999999998864

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=84.03  E-value=1.5  Score=35.18  Aligned_cols=79  Identities=9%  Similarity=-0.027  Sum_probs=56.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ++++||=.|++.|   ..+..|++.|. +|+.+|.+++.++.+...........++.++.+|+....-         ...
T Consensus        24 ~~~~VLDlGCG~G---~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~---------~~~   91 (252)
T d1ri5a_          24 RGDSVLDLGCGKG---GDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM---------DLG   91 (252)
T ss_dssp             TTCEEEEETCTTT---TTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC---------CCS
T ss_pred             CcCEEEEecccCc---HHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc---------ccc
Confidence            5788998898866   23556777775 7999999999888877666554445589999999854321         012


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +..|+++.+-++
T Consensus        92 ~~fD~V~~~~~l  103 (252)
T d1ri5a_          92 KEFDVISSQFSF  103 (252)
T ss_dssp             SCEEEEEEESCG
T ss_pred             ccceEEEEccee
Confidence            468999887665

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=83.83  E-value=2.3  Score=33.81  Aligned_cols=77  Identities=12%  Similarity=-0.026  Sum_probs=53.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHH-CCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTGIGFETARSLAL-HGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~-~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|+.||=.|++.|   .++..|++ .|++|+.++.++..++.+.+.......+.++.++..|+.+..           ..
T Consensus        33 pg~~VLDiGCG~G---~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-----------~~   98 (245)
T d1nkva_          33 PGTRILDLGSGSG---EMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-----------AN   98 (245)
T ss_dssp             TTCEEEEETCTTC---HHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-----------CS
T ss_pred             CCCEEEEEcCCCC---HHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-----------cc
Confidence            4788998888766   35566666 489999999998777665554444433457899999987531           12


Q ss_pred             CCccEEEEcccc
Q psy4246         201 RSLNILVLNAGV  212 (328)
Q Consensus       201 g~id~lvnnAg~  212 (328)
                      +++|.++..-.+
T Consensus        99 ~~fD~v~~~~~~  110 (245)
T d1nkva_          99 EKCDVAACVGAT  110 (245)
T ss_dssp             SCEEEEEEESCG
T ss_pred             CceeEEEEEehh
Confidence            578988766544

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.77  E-value=0.38  Score=39.37  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=27.8

Q ss_pred             ceEEEcCCCCCccHHH-----HHHHHHCCCeEEEeeCCh
Q psy4246         124 YNAIVTGANTGIGFET-----ARSLALHGCRVILACRSL  157 (328)
Q Consensus       124 k~~lITGas~GIG~a~-----a~~la~~Ga~Vi~~~r~~  157 (328)
                      |+|.|+| =||.|+.+     |..|++.|.+|.++|.+.
T Consensus         2 r~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            6788897 89999854     668999999999999875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=83.14  E-value=1.9  Score=34.93  Aligned_cols=77  Identities=8%  Similarity=0.085  Sum_probs=55.2

Q ss_pred             CCceEEEcCCCCC-ccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         122 SNYNAIVTGANTG-IGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       122 ~~k~~lITGas~G-IG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      .|.+||=.|+++| +...+|+.+.. +.+|+.++++++.++.+.+.+.......++.+...|+.+.-      .     .
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~------~-----~  152 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI------S-----D  152 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC------C-----S
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc------c-----c
Confidence            5789999999877 34455555433 35999999999988888877766544568899999987631      0     1


Q ss_pred             CCccEEEEcc
Q psy4246         201 RSLNILVLNA  210 (328)
Q Consensus       201 g~id~lvnnA  210 (328)
                      ..+|.++.+.
T Consensus       153 ~~fD~V~ld~  162 (250)
T d1yb2a1         153 QMYDAVIADI  162 (250)
T ss_dssp             CCEEEEEECC
T ss_pred             ceeeeeeecC
Confidence            4689888753

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.94  E-value=1.7  Score=33.32  Aligned_cols=64  Identities=19%  Similarity=0.183  Sum_probs=44.0

Q ss_pred             HHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccEEEEccccC
Q psy4246         140 ARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       140 a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg~~  213 (328)
                      ++.+++++.+|+.+||+++.+..+.. +   . ..++.+++.+.++.+.   ++...  ..+++|+++..-|+.
T Consensus        33 s~~iL~~~~~viaiD~D~~ai~~a~~-~---~-~~~~~~~~~~f~~~~~---~l~~~--~~~~vdgIl~DLGvS   96 (182)
T d1wg8a2          33 ARGILERGGRVIGLDQDPEAVARAKG-L---H-LPGLTVVQGNFRHLKR---HLAAL--GVERVDGILADLGVS   96 (182)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHH-T---C-CTTEEEEESCGGGHHH---HHHHT--TCSCEEEEEEECSCC
T ss_pred             HHHHhcccCcEEEEhhhhhHHHHHhh-c---c-ccceeEeehHHHHHHH---HHHHc--CCCccCEEEEEccCC
Confidence            45556677899999999987655432 2   1 4578889988876433   33322  236899999999985

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.71  E-value=0.24  Score=34.79  Aligned_cols=37  Identities=14%  Similarity=0.027  Sum_probs=30.5

Q ss_pred             CCCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCCh
Q psy4246         120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL  157 (328)
Q Consensus       120 ~l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~  157 (328)
                      +++||.|+|.|++ --|..+|..|+..+.+|++..|..
T Consensus        29 ~f~gK~VlVVG~g-~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          29 LFVGESVLVVGGA-SSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGTTCCEEEECSS-HHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hcCCCeEEEECCC-CCHHHHHHHHHHhcCEEEEEEecC
Confidence            5799999999985 456789999999988888777654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=82.56  E-value=1.3  Score=34.93  Aligned_cols=70  Identities=14%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             CCCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhc
Q psy4246         121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKF  200 (328)
Q Consensus       121 l~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~  200 (328)
                      ++++.||=.|++.|   .+++.|+++|++|+.++.+++.++.+....     ..++.++..|+.+..           -.
T Consensus        19 ~~~~~VLDiGcG~G---~~~~~l~~~g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~-----------~~   79 (225)
T d2p7ia1          19 FRPGNLLELGSFKG---DFTSRLQEHFNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQ-----------LP   79 (225)
T ss_dssp             CCSSCEEEESCTTS---HHHHHHTTTCSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCC-----------CS
T ss_pred             CCCCcEEEEeCCCc---HHHHHHHHcCCeEEEEeCcHHHhhhhhccc-----ccccccccccccccc-----------cc
Confidence            57888998898776   356788999999999999987765554332     335777887765431           11


Q ss_pred             CCccEEEEc
Q psy4246         201 RSLNILVLN  209 (328)
Q Consensus       201 g~id~lvnn  209 (328)
                      +.+|+++..
T Consensus        80 ~~fD~I~~~   88 (225)
T d2p7ia1          80 RRYDNIVLT   88 (225)
T ss_dssp             SCEEEEEEE
T ss_pred             ccccccccc
Confidence            467877754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=82.07  E-value=2.5  Score=33.30  Aligned_cols=77  Identities=14%  Similarity=-0.004  Sum_probs=54.4

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFR  201 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g  201 (328)
                      .|.+||=.|++.|   .++..|++.|++|+.++.+..-++.+.+.+.... -.++.++..|+.+..-          ..+
T Consensus        16 ~~~rILDiGcGtG---~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~-~~~~~~~~~d~~~~~~----------~~~   81 (234)
T d1xxla_          16 AEHRVLDIGAGAG---HTALAFSPYVQECIGVDATKEMVEVASSFAQEKG-VENVRFQQGTAESLPF----------PDD   81 (234)
T ss_dssp             TTCEEEEESCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHT-CCSEEEEECBTTBCCS----------CTT
T ss_pred             CCCEEEEeCCcCc---HHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccc-cccccccccccccccc----------ccc
Confidence            4678999999888   4566788889999999999887776665555442 2468888888765320          015


Q ss_pred             CccEEEEcccc
Q psy4246         202 SLNILVLNAGV  212 (328)
Q Consensus       202 ~id~lvnnAg~  212 (328)
                      .+|+++.+-.+
T Consensus        82 ~fD~v~~~~~l   92 (234)
T d1xxla_          82 SFDIITCRYAA   92 (234)
T ss_dssp             CEEEEEEESCG
T ss_pred             ccceeeeecee
Confidence            78877765443

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=81.86  E-value=6  Score=29.88  Aligned_cols=66  Identities=12%  Similarity=0.114  Sum_probs=50.6

Q ss_pred             HHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCCccEEEEcccc
Q psy4246         142 SLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV  212 (328)
Q Consensus       142 ~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~id~lvnnAg~  212 (328)
                      .....|-++++.+.+....+.+...+...  |.++..+..++.+. .-+++++++..  |.+++||+.--.
T Consensus        26 ~~~~~g~r~lvfc~t~~~~~~l~~~L~~~--Gi~a~~~Hg~~~~~-eR~~~l~~F~~--G~~~vLVaT~v~   91 (174)
T d1c4oa2          26 ERAARGERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELDAF-KRQALIRDLRL--GHYDCLVGINLL   91 (174)
T ss_dssp             HHHHTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHH-HHHHHHHHHHT--TSCSEEEESCCC
T ss_pred             HHHhcCCcEEEEEcchhHHHHHHHHHHhc--CCceEEEecccchH-HHHHHHHHHHC--CCeEEEEeeeee
Confidence            33457889999999998888888888776  77899999998754 34555666544  899999987644

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=81.52  E-value=5.7  Score=29.76  Aligned_cols=74  Identities=9%  Similarity=0.025  Sum_probs=40.4

Q ss_pred             eEEEcCCCCCccHH-HHHHHHHC-----CCeEEEeeCChhHHHHHHHHHH---hhCCCCeEEE-EEcccCCHHHHHHHHH
Q psy4246         125 NAIVTGANTGIGFE-TARSLALH-----GCRVILACRSLDKANDAISKIL---TEKPSAQCIA-MELNLCRLKSVKKFAE  194 (328)
Q Consensus       125 ~~lITGas~GIG~a-~a~~la~~-----Ga~Vi~~~r~~~~~~~~~~~l~---~~~~~~~~~~-~~~Dls~~~~v~~~~~  194 (328)
                      .+.|.||++ .|.. +...|+.+     +.+|+++|.++++++.....+.   ... +..... ...|.      ++.+ 
T Consensus         5 KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~------~eal-   75 (167)
T d1u8xx1           5 SIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK-APDIEFAATTDP------EEAF-   75 (167)
T ss_dssp             EEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH-CTTSEEEEESCH------HHHH-
T ss_pred             eEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHh-CCCcceEecCCh------hhcc-
Confidence            466778755 4543 33444432     2489999999988764333332   221 222222 22221      1222 


Q ss_pred             HHHHhcCCccEEEEccccC
Q psy4246         195 EYQKKFRSLNILVLNAGVF  213 (328)
Q Consensus       195 ~~~~~~g~id~lvnnAg~~  213 (328)
                            ..-|++|+.||..
T Consensus        76 ------~~AD~Vvitag~~   88 (167)
T d1u8xx1          76 ------TDVDFVMAHIRVG   88 (167)
T ss_dssp             ------SSCSEEEECCCTT
T ss_pred             ------CCCCEEEECCCcC
Confidence                  3689999999974

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.39  E-value=0.43  Score=39.72  Aligned_cols=30  Identities=37%  Similarity=0.568  Sum_probs=26.3

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCC
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRS  156 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~  156 (328)
                      |||.|| |..|..+|..|+++|++|+++.+.
T Consensus        19 VlVIG~-G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          19 VVVVGS-GGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEecC
Confidence            788887 677899999999999999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.24  E-value=1.6  Score=30.58  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=26.2

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHC---CCeEEEeeCCh
Q psy4246         123 NYNAIVTGANTGIGFETARSLALH---GCRVILACRSL  157 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~---Ga~Vi~~~r~~  157 (328)
                      .|.++|.|| |-+|.++|..|...   |.+|.++.+..
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            467888888 89999999766654   56799988754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=81.14  E-value=12  Score=30.85  Aligned_cols=82  Identities=6%  Similarity=0.108  Sum_probs=54.5

Q ss_pred             CCceEEEcCCC-CCccHHHHHHHHHCCC-eEEEeeCChhHHHHHHHHHHhhC-CCCeEEEEEcccCCHHHHHHHHHHHHH
Q psy4246         122 SNYNAIVTGAN-TGIGFETARSLALHGC-RVILACRSLDKANDAISKILTEK-PSAQCIAMELNLCRLKSVKKFAEEYQK  198 (328)
Q Consensus       122 ~~k~~lITGas-~GIG~a~a~~la~~Ga-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~~~~~~~  198 (328)
                      +|+.||=..+. ||++.    .++..|+ .|+.++.+...++.+.+.+.... ...++.++..|+-      ..++...+
T Consensus       144 ~g~~VLdlf~~~G~~sl----~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~------~~l~~~~~  213 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSV----AAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF------DYFKYARR  213 (317)
T ss_dssp             BTCEEEEETCTTTHHHH----HHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH------HHHHHHHH
T ss_pred             CCCceeecCCCCcHHHH----HHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH------HHHHHHHh
Confidence            57888855554 44433    3456787 69999999888777666654332 2347888998873      33444445


Q ss_pred             hcCCccEEEEccccC
Q psy4246         199 KFRSLNILVLNAGVF  213 (328)
Q Consensus       199 ~~g~id~lvnnAg~~  213 (328)
                      ...+.|++|.+.-.+
T Consensus       214 ~~~~fD~Ii~DPP~f  228 (317)
T d2b78a2         214 HHLTYDIIIIDPPSF  228 (317)
T ss_dssp             TTCCEEEEEECCCCC
T ss_pred             hcCCCCEEEEcChhh
Confidence            556899999986543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=81.00  E-value=0.45  Score=38.12  Aligned_cols=32  Identities=28%  Similarity=0.311  Sum_probs=26.7

Q ss_pred             EEEcCCCCCccHHHHHHHHHCCCeEEEeeCChh
Q psy4246         126 AIVTGANTGIGFETARSLALHGCRVILACRSLD  158 (328)
Q Consensus       126 ~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~  158 (328)
                      |+|.|| |--|..+|..|+++|.+|+++.++..
T Consensus         5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            678887 45678999999999999999987643

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=80.83  E-value=4.9  Score=27.98  Aligned_cols=81  Identities=11%  Similarity=0.289  Sum_probs=54.1

Q ss_pred             CceEEEcCCCCCccHHHHHHHHHCCCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccCCHHHHHHHHHHHHHhcCC
Q psy4246         123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRS  202 (328)
Q Consensus       123 ~k~~lITGas~GIG~a~a~~la~~Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~g~  202 (328)
                      +|+|||.=-...+-..+.+.|...|++|..+....+    +.+.+...  ...+.+....+-+.+.+ ++++++.+....
T Consensus         1 NkrILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~e----al~~~~~~--~~dlillD~~mP~~~G~-el~~~lr~~~~~   73 (119)
T d1peya_           1 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQ----ALDIVTKE--RPDLVLLDMKIPGMDGI-EILKRMKVIDEN   73 (119)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHH----HHHHHHHH--CCSEEEEESCCTTCCHH-HHHHHHHHHCTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHH----HHHHHHhC--CCCEEEEeccCCCCCHH-HHHHHHHHhCCC
Confidence            477888888888888889999999999886654333    23333333  23566555555565543 567777777777


Q ss_pred             ccEEEEcc
Q psy4246         203 LNILVLNA  210 (328)
Q Consensus       203 id~lvnnA  210 (328)
                      +-+++..+
T Consensus        74 ~pvi~lt~   81 (119)
T d1peya_          74 IRVIIMTA   81 (119)
T ss_dssp             CEEEEEES
T ss_pred             CcEEEEec
Confidence            77777654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.70  E-value=3.7  Score=33.59  Aligned_cols=60  Identities=12%  Similarity=0.022  Sum_probs=43.5

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHC-CCeEEEeeCChhHHHHHHHHHHhhCCCCeEEEEEcccC
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC  184 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~-Ga~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls  184 (328)
                      .|..||=.|++-|   .++..++++ |++|+.++.+++..+.+.+.+.+..-..++.....|..
T Consensus        52 ~g~~VLDiGCG~G---~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~  112 (280)
T d2fk8a1          52 PGMTLLDIGCGWG---TTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE  112 (280)
T ss_dssp             TTCEEEEESCTTS---HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred             CCCEEEEecCCch---HHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence            4889999998755   356667765 99999999999888777666665543446666666654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=80.45  E-value=0.42  Score=36.28  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=24.6

Q ss_pred             CCceEEEcCCCCCccHHHHHHHHHCCCeEEE
Q psy4246         122 SNYNAIVTGANTGIGFETARSLALHGCRVIL  152 (328)
Q Consensus       122 ~~k~~lITGas~GIG~a~a~~la~~Ga~Vi~  152 (328)
                      +++.|+|.|| |-+|.++|..|.+.|++|.+
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v   31 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNI   31 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEE
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEE
Confidence            3677888887 78999999999999986443

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=80.31  E-value=3.4  Score=30.57  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=31.5

Q ss_pred             ceEEEcCCCCCccHHHHHHHHHC--CCeEEEe--eCChhHHHHHHHHH
Q psy4246         124 YNAIVTGANTGIGFETARSLALH--GCRVILA--CRSLDKANDAISKI  167 (328)
Q Consensus       124 k~~lITGas~GIG~a~a~~la~~--Ga~Vi~~--~r~~~~~~~~~~~l  167 (328)
                      |.+.|-|++|.||..+..-+.+.  ..+|+.+  .++.+.+.+...+.
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f   49 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEF   49 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHH
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHH
Confidence            67999999999999999888776  3576654  35555555444444