Psyllid ID: psy434

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------

MLTAERMATESRRLDPLGAPSTGGSCSSNLSLSTDHSSSSVLPLPLHQQIPATRFAWSGFYPQRIMFVLGMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDDCSAETLNQMQLSSPSDSQPLSPTIKRNINNNCPQYVNKEDLSKSRGKLQNL

ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEcccccccccccccccccEEcccccccccccEEEEEEEEccccccccccccccccccEEEEEcccEEEccccccccccccEEcccccccHHHHHccccccccEEEEcccccccccEEEccccccccEEEEEEccccccccccccccEEEEccccEEEEEccccccHHccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEcEEEEEcccccccccEEEEEccccccccccEEEEEcccccccHEEEEEEEEcccccEEEcccEEEEEEEcccccccccEEcccccEEHHHHHcccEEcccccEEcccccccccEEccccEEEEEEEEEEEccccccccccccccEEEEcHHHcEEEEcccccHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHccccccccccccccccccccccccccccccccccccccccccc

mltaermatesrrldplgapstggscssnlslstdhssssvlplplhqqipatrfawsgfypQRIMFVLGMGCFLDLSSYSSLYQtfwggglskpcdvhtklyctNKIVQINYklqnyklpdiYFLLFLFSSswvvagkadpispprihvhpdspasgaqwsKQVVSFDKlkltnnqlddnghIILNSMHKYQPRFHVvllspesnsasatspfktflfpeTMFTAVTAYQnhritqlkiasnpfakgfrecepddcsaetlnqmqlsspsdsqplsptikrninnncpqyvnkedlsksrgklqnl

mltaermatesrrldplgapstGGSCSSNLSLSTDHSSSSVLPLPLHQQIPATRFAWSGFYPQRIMFVLGMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDDCSAETLNQMQLSSPSDSQPLSPTIKrninnncpqyvnkedlsksrgklqnl

MLTAERMATESRRLDPLGAPstggscssnlslstdhssssVLPLPLHQQIPATRFAWSGFYPQRIMFVLGMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDDCSAETLNQMqlsspsdsqplspTIKRNINNNCPQYVNKEDLSKSRGKLQNL

*******************************************LPLHQQIPATRFAWSGFYPQRIMFVLGMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLLFLFSSSWVVAGKAD*******************WSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLS**********PFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFR*********************************************************

***************************************************ATRFAWSGFYPQRIMFVLGMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLLFLFSSSWVVAG***PI*PPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLL*********TSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFA*************************************************************

***********RRLDPL************************LPLPLHQQIPATRFAWSGFYPQRIMFVLGMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHP*********SKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDDCSAETLN*************SPTIKRNINNNCPQYVNKED***********

******************************************PLPLHQQIPATRFAWSGFYPQRIMFVLGMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEP*****************************************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		307	2.2.26 [Sep-21-2011]
O43435		398	T-box transcription facto	yes	N/A	0.514	0.396	0.635	3e-54
Q8AX98		463	T-box transcription facto	N/A	N/A	0.439	0.291	0.727	9e-54
Q3SA49		463	T-box transcription facto	yes	N/A	0.439	0.291	0.727	1e-53
Q32NI9		463	T-box transcription facto	N/A	N/A	0.439	0.291	0.727	1e-53
Q8AXX2		460	T-box transcription facto	yes	N/A	0.439	0.293	0.720	2e-53
P70323		479	T-box transcription facto	yes	N/A	0.511	0.327	0.632	4e-53
Q810F8		385	T-box transcription facto	no	N/A	0.442	0.353	0.708	7e-53
O75333		385	T-box transcription facto	no	N/A	0.442	0.353	0.700	9e-51
O95935		607	T-box transcription facto	no	N/A	0.508	0.257	0.529	3e-42
Q9EPZ6		613	T-box transcription facto	no	N/A	0.508	0.254	0.529	5e-42

>sp\|O43435\|TBX1_HUMAN T-box transcription factor TBX1 OS=Homo sapiens GN=TBX1 PE=1 SV=1	Back alignment and function desciption

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/159 (63%), Positives = 118/159 (74%), Gaps = 1/159 (0%)

Query: 99  HTKLYCTNKIVQINYKLQNYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASG 158
             KL+  + +      +    + D  +     SSSW+VAGKADP +P R+H HPDSPA G
Sbjct: 144 QVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHYHPDSPAKG 203

Query: 159 AQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNSAS-ATSPFKTF 217
           AQW KQ+VSFDKLKLTNN LDDNGHIILNSMH+YQPRFHVV + P  +S   A   FKTF
Sbjct: 204 AQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRKDSEKYAEENFKTF 263

Query: 218 LFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDD 256
           +F ET FTAVTAYQNHRITQLKIASNPFAKGFR+C+P+D
Sbjct: 264 VFEETRFTAVTAYQNHRITQLKIASNPFAKGFRDCDPED 302

Probable transcriptional regulator involved in developmental processes. Is required for normal development of the pharyngeal arch arteries.
Homo sapiens (taxid: 9606)

>sp\|Q8AX98\|TBX1A_XENLA T-box transcription factor TBX1-A OS=Xenopus laevis GN=tbx1-a PE=1 SV=1	Back alignment and function description

>sp\|Q3SA49\|TBX1_XENTR T-box transcription factor TBX1 OS=Xenopus tropicalis GN=tbx1 PE=2 SV=1	Back alignment and function description

>sp\|Q32NI9\|TBX1B_XENLA T-box transcription factor TBX1-B OS=Xenopus laevis GN=tbx1-b PE=2 SV=1	Back alignment and function description

>sp\|Q8AXX2\|TBX1_DANRE T-box transcription factor TBX1 OS=Danio rerio GN=tbx1 PE=2 SV=1	Back alignment and function description

>sp\|P70323\|TBX1_MOUSE T-box transcription factor TBX1 OS=Mus musculus GN=Tbx1 PE=2 SV=2	Back alignment and function description

>sp\|Q810F8\|TBX10_MOUSE T-box transcription factor TBX10 OS=Mus musculus GN=Tbx10 PE=2 SV=1	Back alignment and function description

>sp\|O75333\|TBX10_HUMAN T-box transcription factor TBX10 OS=Homo sapiens GN=TBX10 PE=2 SV=2	Back alignment and function description

>sp\|O95935\|TBX18_HUMAN T-box transcription factor TBX18 OS=Homo sapiens GN=TBX18 PE=2 SV=3	Back alignment and function description

>sp\|Q9EPZ6\|TBX18_MOUSE T-box transcription factor TBX18 OS=Mus musculus GN=Tbx18 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		307
328708086		438	PREDICTED: t-box transcription factor TB	0.674	0.472	0.559	2e-60
357618119		364	putative T-box protein [Danaus plexippus	0.472	0.398	0.744	3e-59
242025118		414	T-box protein, putative [Pediculus human	0.488	0.362	0.701	5e-59
321474081		198	hypothetical protein DAPPUDRAFT_3881 [Da	0.410	0.636	0.825	1e-57
91084303		406	PREDICTED: similar to T-box protein Tbx1	0.511	0.386	0.692	1e-57
443716341		492	hypothetical protein CAPTEDRAFT_226618 [	0.478	0.298	0.714	2e-56
46518314		426	T-box protein Tbx1 [Achaearanea tepidari	0.521	0.375	0.656	9e-56
380026597		443	PREDICTED: T-box transcription factor TB	0.472	0.327	0.727	4e-55
350415730		407	PREDICTED: T-box transcription factor TB	0.472	0.356	0.721	4e-55
340728763		407	PREDICTED: t-box transcription factor TB	0.472	0.356	0.721	4e-55

>gi\|328708086\|ref\|XP_001945694.2\| PREDICTED: t-box transcription factor TBX10-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/209 (55%), Positives = 152/209 (72%), Gaps = 2/209 (0%)

Query: 100 TKLYCTNKIVQINYKLQNYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASGA 159
            +LY  + + +    +    + D  +     SSSWVVAGK+DPISPPR+H+HPDSPASG 
Sbjct: 115 VRLYGLDPVAEYMLMMDFVPVDDKRYRYAFHSSSWVVAGKSDPISPPRVHIHPDSPASGG 174

Query: 160 QWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLL-SPESNSASATSPFKTFL 218
           QW KQVVSFDKLKLTNNQ+DDNGHIILNSMH+YQPRFHV+ +   +  S+++T+ FKTF+
Sbjct: 175 QWLKQVVSFDKLKLTNNQMDDNGHIILNSMHRYQPRFHVLYIPGRDEGSSNSTNNFKTFM 234

Query: 219 FPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDDCSAETLNQMQLSSPSDSQPLSP 278
           FPET FTAVTAYQNHRITQLKIASNPFAKGFR+CE ++C   +++    ++ + SQ    
Sbjct: 235 FPETKFTAVTAYQNHRITQLKIASNPFAKGFRDCETEECGPMSIDSEPQAANNKSQCKKN 294

Query: 279 TIKRNINNNCPQYVNKEDLSKSRGKLQNL 307
               + NNNC Q+ NKE  + S G ++N+
Sbjct: 295 VTGIHNNNNCIQFPNKES-TGSLGVMENM 322

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|357618119\|gb\|EHJ71213.1\| putative T-box protein [Danaus plexippus]	Back alignment and taxonomy information

>gi\|242025118\|ref\|XP_002432973.1\| T-box protein, putative [Pediculus humanus corporis] gi\|212518482\|gb\|EEB20235.1\| T-box protein, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|321474081\|gb\|EFX85047.1\| hypothetical protein DAPPUDRAFT_3881 [Daphnia pulex]	Back alignment and taxonomy information

>gi\|91084303\|ref\|XP_971911.1\| PREDICTED: similar to T-box protein Tbx1 [Tribolium castaneum] gi\|270009267\|gb\|EFA05715.1\| optomotor blind related gene 1 protein [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|443716341\|gb\|ELU07917.1\| hypothetical protein CAPTEDRAFT_226618 [Capitella teleta]	Back alignment and taxonomy information

>gi\|46518314\|dbj\|BAD16723.1\| T-box protein Tbx1 [Achaearanea tepidariorum]	Back alignment and taxonomy information

>gi\|380026597\|ref\|XP_003697034.1\| PREDICTED: T-box transcription factor TBX10-like [Apis florea]	Back alignment and taxonomy information

>gi\|350415730\|ref\|XP_003490732.1\| PREDICTED: T-box transcription factor TBX1-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|340728763\|ref\|XP_003402685.1\| PREDICTED: t-box transcription factor TBX1-like [Bombus terrestris]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		307
UNIPROTKB\|F1PEL4		363	TBX1 "Uncharacterized protein"	0.410	0.347	0.771	2.4e-51
UNIPROTKB\|O43435		398	TBX1 "T-box transcription fact	0.410	0.316	0.771	2.4e-51
UNIPROTKB\|D2HEY4		248	PANDA_009394 "Putative unchara	0.410	0.508	0.771	2.4e-51
UNIPROTKB\|F7HZN4		400	TBX1 "Uncharacterized protein"	0.410	0.315	0.771	2.4e-51
RGD\|1307734		480	Tbx1 "T-box 1" [Rattus norvegi	0.410	0.262	0.771	2.4e-51
ZFIN\|ZDB-GENE-030805-5		468	tbx1 "T-box 1" [Danio rerio (t	0.410	0.269	0.763	5.1e-51
MGI\|MGI:98493		479	Tbx1 "T-box 1" [Mus musculus (	0.410	0.263	0.763	1.7e-50
MGI\|MGI:1261436		385	Tbx10 "T-box 10" [Mus musculus	0.442	0.353	0.708	5.8e-50
RGD\|1584144		344	Tbx10 "T-box 10" [Rattus norve	0.456	0.406	0.695	5.8e-50
UNIPROTKB\|F1Q320		381	TBX10 "Uncharacterized protein	0.465	0.375	0.678	2e-49

UNIPROTKB\|F1PEL4 TBX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 98/127 (77%), Positives = 109/127 (85%)

Query:   131 SSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMH 190
             SSSW+VAGKADP +P R+H HPDSPA GAQW KQ+VSFDKLKLTNN LDDNGHIILNSMH
Sbjct:    42 SSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMH 101

Query:   191 KYQPRFHVVLLSPESNSAS-ATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGF 249
             +YQPRFHVV + P  +S   A   FKTF+F ET FTAVTAYQNHRITQLKIASNPFAKGF
Sbjct:   102 RYQPRFHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGF 161

Query:   250 RECEPDD 256
             R+C+P+D
Sbjct:   162 RDCDPED 168

GO:0042474 "middle ear morphogenesis" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=ISS

GO:0090103 "cochlea morphogenesis" evidence=ISS

GO:0070166 "enamel mineralization" evidence=ISS

GO:0060982 "coronary artery morphogenesis" evidence=ISS

GO:0060415 "muscle tissue morphogenesis" evidence=ISS

GO:0060325 "face morphogenesis" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=ISS

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISS

GO:0048844 "artery morphogenesis" evidence=ISS

GO:0048752 "semicircular canal morphogenesis" evidence=ISS

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=ISS

GO:0048644 "muscle organ morphogenesis" evidence=ISS

GO:0048538 "thymus development" evidence=ISS

GO:0048514 "blood vessel morphogenesis" evidence=ISS

GO:0045596 "negative regulation of cell differentiation" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0042693 "muscle cell fate commitment" evidence=ISS

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=ISS

GO:0042473 "outer ear morphogenesis" evidence=ISS

GO:0042472 "inner ear morphogenesis" evidence=ISS

GO:0042471 "ear morphogenesis" evidence=ISS

GO:0035909 "aorta morphogenesis" evidence=ISS

GO:0035176 "social behavior" evidence=ISS

GO:0030878 "thyroid gland development" evidence=ISS

GO:0030855 "epithelial cell differentiation" evidence=ISS

GO:0021644 "vagus nerve morphogenesis" evidence=ISS

GO:0009952 "anterior/posterior pattern specification" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0007517 "muscle organ development" evidence=ISS

GO:0007507 "heart development" evidence=ISS

GO:0007498 "mesoderm development" evidence=ISS

GO:0007389 "pattern specification process" evidence=ISS

GO:0007368 "determination of left/right symmetry" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003151 "outflow tract morphogenesis" evidence=ISS

GO:0003007 "heart morphogenesis" evidence=ISS

GO:0001945 "lymph vessel development" evidence=ISS

GO:0001755 "neural crest cell migration" evidence=ISS

GO:0001708 "cell fate specification" evidence=ISS

GO:0001568 "blood vessel development" evidence=ISS

GO:0001525 "angiogenesis" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB\|O43435 TBX1 "T-box transcription factor TBX1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|D2HEY4 PANDA_009394 "Putative uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)]	Back alignment and assigned GO terms

UNIPROTKB\|F7HZN4 TBX1 "Uncharacterized protein" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

RGD\|1307734 Tbx1 "T-box 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030805-5 tbx1 "T-box 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:98493 Tbx1 "T-box 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

MGI\|MGI:1261436 Tbx10 "T-box 10" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1584144 Tbx10 "T-box 10" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q320 TBX10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SA49	TBX1_XENTR	No assigned EC number	0.7279	0.4397	0.2915	yes	N/A
P70323	TBX1_MOUSE	No assigned EC number	0.6329	0.5114	0.3277	yes	N/A
O43435	TBX1_HUMAN	No assigned EC number	0.6352	0.5146	0.3969	yes	N/A
Q8AXX2	TBX1_DANRE	No assigned EC number	0.7205	0.4397	0.2934	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		307
cd00182		188	cd00182, TBOX, T-box DNA binding domain of the T-b	2e-75
pfam00907		182	pfam00907, T-box, T-box	4e-71
smart00425		190	smart00425, TBOX, Domain first found in the mice T	8e-65

>gnl\|CDD\|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators	Back alignment and domain information

 Score =  228 bits (584), Expect = 2e-75
 Identities = 82/122 (67%), Positives = 93/122 (76%), Gaps = 2/122 (1%)

Query: 132 SSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHK 191
             WVVAGKA+P  PPR++VHPDSPA+GA W KQ VSFDKLKLTNN LD+NGHIILNSMHK
Sbjct: 67  GKWVVAGKAEPHLPPRVYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHK 126

Query: 192 YQPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRE 251
           YQPR H+V +   S    +    +TF FPET F AVTAYQN  ITQLKI +NPFAKGFR+
Sbjct: 127 YQPRLHIVEVDDSSP--FSWRLVQTFSFPETEFIAVTAYQNQEITQLKIDNNPFAKGFRD 184

Query: 252 CE 253
             
Sbjct: 185 NG 186

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors. Length = 188

>gnl\|CDD\|216184 pfam00907, T-box, T-box	Back alignment and domain information

>gnl\|CDD\|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		307
KOG3586\|consensus		437		100.0
cd00182		188	TBOX T-box DNA binding domain of the T-box family	100.0
smart00425		190	TBOX Domain first found in the mice T locus (Brach	100.0
PF00907		184	T-box: T-box; InterPro: IPR001699 Transcription fa	100.0
KOG3585\|consensus		328		100.0

>KOG3586\|consensus	Back alignment and domain information

Probab=100.00  E-value=8.8e-69  Score=512.66  Aligned_cols=188  Identities=56%  Similarity=0.879  Sum_probs=175.0

Q ss_pred             ccchhhhhccCCCc-eEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeeeEEEecCcceeE
Q psy434           51 PATRFAWSGFYPQR-IMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLL  127 (307)
Q Consensus        51 ~~~~~~W~~f~~~~-EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~~erVD~kryRy  127 (307)
                      ||..++|++||+++ |||||  ||+|||.+.        -.|+||||    ++.|+++         +++++||+|||||
T Consensus        84 Le~keLWdrFh~lGTEMIITKsGRRMFPTvr--------V~~~GldP----~a~Y~vl---------mDvVPvD~KRYRY  142 (437)
T KOG3586|consen   84 LETKELWDRFHDLGTEMIITKSGRRMFPTVR--------VKFSGLDP----MADYYVL---------MDVVPVDSKRYRY  142 (437)
T ss_pred             eehHHHHHHHHhcCceEEEecccccccceEE--------EEEecCCc----ccceEEE---------EeEEecccceeee
Confidence            99999999999976 99999  999999998        48999955    9999998         5688999999999


Q ss_pred             eeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCceEecCCccccceEEEEEcCCCCCC
Q psy434          128 FLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNS  207 (307)
Q Consensus       128 kf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~PvL~I~e~~~~~~~  207 (307)
                      .|+..+|+++||+|+..++|+|+|||+|++|+.||++.|||||+|||||.+|++|||+||||||||||+||++.+.....
T Consensus       143 ayH~S~WlvAGkADp~~p~R~yvHPDSP~sGe~wmkqiVSFdK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~~~~~s  222 (437)
T KOG3586|consen  143 AYHSSSWLVAGKADPAPPPRVYVHPDSPASGEQWMKQIVSFDKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLDPGNDS  222 (437)
T ss_pred             eecccceeeecCCCCCCCCceeeCCCCCCCHHHHHHhhhchheeeccccccccCCcEeeecccccCCceEEEEecCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999866422


Q ss_pred             C---CCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCCCCCCCchh
Q psy434          208 A---SATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDDCSA  259 (307)
Q Consensus       208 ~---~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~~~~~~~~~  259 (307)
                      .   ...+.++||+|+||+|+|||||||++||+|||+.|||||||||+++.+|+.
T Consensus       223 ~~~~~~~e~~kTF~FpET~FtAVTAYQNq~ITkLKI~sNPFAKGFRD~~~~~~~~  277 (437)
T KOG3586|consen  223 NKYVEKNEGFKTFVFPETVFTAVTAYQNQRITKLKIESNPFAKGFRDCGRNDWPD  277 (437)
T ss_pred             cccccccccceeEeccceeEEEEeecccceeeeeeeccCccccccccCCccCccc
Confidence            2   344678999999999999999999999999999999999999999988643

>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators	Back alignment and domain information

>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein	Back alignment and domain information

>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []	Back alignment and domain information

>KOG3585\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		307
4a04_A		203	Structure Of The Dna-Bound T-Box Domain Of Human Tb		2e-52
2x6u_A		203	Crystal Structure Of Human Tbx5 In The Dna-Free For		1e-41
1h6f_A		193	Human Tbx3, A Transcription Factor Responsible For		1e-38
1xbr_A		184	T Domain From Xenopus Laevis Bound To Dna Length =		5e-27

>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A Transcription Factor Associated With The Digeorge Syndrome Length = 203

Back alignment and structure

Iteration: 1

Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 95/122 (77%), Positives = 104/122 (85%), Gaps = 1/122 (0%) Query: 131 SSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMH 190 SSSW+VAGKADP +P R+H HPDSPA GAQW KQ+VSFDKLKLTNN LDDNGHIILNSMH Sbjct: 82 SSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMH 141 Query: 191 KYQPRFHVVLLSPESNSAS-ATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGF 249 +YQPRFHVV + P +S A FKTF+F ET FTAVTAYQNHRITQLKIASNPFAKGF Sbjct: 142 RYQPRFHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGF 201 Query: 250 RE 251 R+ Sbjct: 202 RD 203

PyMOL of 4a04

>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form Length = 203

Back alignment and structure

>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar- Mammary Syndrome, Bound To A Palindromic Dna Site Length = 193

Back alignment and structure

>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna Length = 184

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		307
2x6u_A		203	T-box transcription factor TBX5; developmental pro	1e-49
1h6f_A		193	T-box transcription factor TBX3; transcription fac	1e-46
4a04_A		203	T-box transcription factor TBX1; transcription, T-	7e-45
1xbr_A		184	Protein (T protein); complex (transcription factor	1e-42
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203	Back alignment and structure

 Score =  163 bits (412), Expect = 1e-49
 Identities = 78/136 (57%), Positives = 96/136 (70%), Gaps = 2/136 (1%)

Query: 131 SSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMH 190
            + W V GKA+P  P R++VHPDSPA+GA W +Q+VSF KLKLTNN LD  GHIILNSMH
Sbjct: 70  DNKWSVTGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMH 129

Query: 191 KYQPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFR 250
           KYQPR H+V     +   S  + F T +FPET F AVT+YQNH+ITQLKI +NPFAKGFR
Sbjct: 130 KYQPRLHIVKADENNGFGSKNTAFCTHVFPETAFIAVTSYQNHKITQLKIENNPFAKGFR 189

Query: 251 ECEPDDCSAETLNQMQ 266
             +  +      ++MQ
Sbjct: 190 GSDDMELHRM--SRMQ 203

PyMOL of 2x6u

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193	Back alignment and structure

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203	Back alignment and structure

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		307
4a04_A		203	T-box transcription factor TBX1; transcription, T-	100.0
2x6u_A		203	T-box transcription factor TBX5; developmental pro	100.0
1h6f_A		193	T-box transcription factor TBX3; transcription fac	100.0
1xbr_A		184	Protein (T protein); complex (transcription factor	100.0

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.4e-68  Score=481.46  Aligned_cols=186  Identities=56%  Similarity=0.846  Sum_probs=166.7

Q ss_pred             CccCCCcccCCccchhhhhccCCC-ceEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeee
Q psy434           40 SVLPLPLHQQIPATRFAWSGFYPQ-RIMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQ  116 (307)
Q Consensus        40 ~~~~~~lh~~~~~~~~~W~~f~~~-~EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~  116 (307)
                      +.|.|.|     +++++|++||+. +|||||  ||+|||.|+ |       +|+||||    +++|.++         |+
T Consensus        14 ~~i~V~L-----e~~~LW~~Fh~~~tEMIITK~GRrmFP~l~-~-------~vsGLdp----~~~Y~~~---------l~   67 (203)
T 4a04_A           14 GGVSVQL-----EMKALWDEFNQLGTEMIVTKAGRRMFPTFQ-V-------KLFGMDP----MADYMLL---------MD   67 (203)
T ss_dssp             -CCEEEE-----TTHHHHHHHHHHCCEEECCSSCEECSSCEE-E-------EEESCCT----TSEEEEE---------EE
T ss_pred             CCcEEEe-----CCHHHHHhhCcCCCeEEEEeCCcccCCceE-E-------EEeCCCc----ccCcEEE---------EE
Confidence            3455555     467999999995 699999  999999999 5       9999955    9999998         67


Q ss_pred             EEEecCcceeEeeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCceEecCCccccceE
Q psy434          117 NYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRF  196 (307)
Q Consensus       117 ~erVD~kryRykf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~PvL  196 (307)
                      |+++|++||||+|++|+|+++|++|+..++|+++|||||++|++||+++|+|++||||||..+++++|+|+|||||||||
T Consensus        68 ~~~~D~~ryry~~~~~~W~~~gkae~~~p~r~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrl  147 (203)
T 4a04_A           68 FVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRF  147 (203)
T ss_dssp             EEESCSEEEEEETTTTEEEEEEECCCCCCCCCCBCTTCSEEHHHHHHSCEEECSCEEECCTTCCSSCEECCTTCEEEEEE
T ss_pred             EEEccCCeEEecccCCCEeECCccCCCCCCceEEcCCCCcCHHHHhhCcceeeeeecccCccCcCCEEEEeeccccccEE
Confidence            89999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCC-CCCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCC
Q psy434          197 HVVLLSPESNS-ASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRE  251 (307)
Q Consensus       197 ~I~e~~~~~~~-~~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~  251 (307)
                      ||+++++.+.. ....+.+++|+|+||+|||||+|||++||+|||++|||||||||
T Consensus       148 hIv~~~~~~~~~~~~~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NPFAkgFrd  203 (203)
T 4a04_A          148 HVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGFRD  203 (203)
T ss_dssp             EEEECCCC--------CCEEEEECGGGCEEEESSCCCHHHHHHHHHHCGGGGGGCC
T ss_pred             EEEEcCCCcccccccCCceEEEECCCcEEEeeCccCCHHHHHHHhccCCCCcccCC
Confidence            99999865422 12346789999999999999999999999999999999999997

PyMOL of 4a04

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*	Back alignment and structure

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4	Back alignment and structure

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		307
d1h6fa_		184	b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa	5e-58
d1xbra_		184	b.2.5.4 (A:) T domain from Brachyury transcription	8e-56

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184	Back information, alignment and structure


class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  182 bits (463), Expect = 5e-58
 Identities = 76/121 (62%), Positives = 92/121 (76%), Gaps = 2/121 (1%)

Query: 131 SSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMH 190
           +S W+VAGKADP  P R+++HPDSPA+G QW  +VV+F KLKLTNN  D +G  ILNSMH
Sbjct: 66  NSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMH 125

Query: 191 KYQPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFR 250
           KYQPRFH+V  +         S F+T+LFPET F AVTAYQN +ITQLKI +NPFAKGFR
Sbjct: 126 KYQPRFHIVRANDILKLPY--STFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFAKGFR 183

Query: 251 E 251
           +
Sbjct: 184 D 184

PyMOL of d1h6fa_

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		307
d1h6fa_		184	T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId	100.0
d1xbra_		184	T domain from Brachyury transcription factor {Afri	100.0

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-66  Score=458.94  Aligned_cols=176  Identities=49%  Similarity=0.775  Sum_probs=161.6

Q ss_pred             ccchhhhhccCCC-ceEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeeeEEEecCcceeE
Q psy434           51 PATRFAWSGFYPQ-RIMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLL  127 (307)
Q Consensus        51 ~~~~~~W~~f~~~-~EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~~erVD~kryRy  127 (307)
                      |+++++|++||++ +|||||  ||+|||.|+ |       .|+||+|    ++.|.+.         |+|+++|++||+ 
T Consensus         6 L~~~~lW~~F~~~~tEMIvTk~GRrmFP~l~-~-------~vsGLdp----~~~Y~v~---------l~~~~~D~~ryk-   63 (184)
T d1h6fa_           6 LEAKELWDQFHKRGTEMVITKSGRRMFPPFK-V-------RCSGLDK----KAKYILL---------MDIIAADDCRYK-   63 (184)
T ss_dssp             ETTHHHHHHHHHHCCEEECCTTCBCCSSCCE-E-------EEESCCS----SSEEEEE---------EEEEEEEEEEEE-
T ss_pred             ECCHHHHHHhccCCCEEEEecCCcccCceeE-E-------EEeccCC----CcceEEE---------EEEEECcCCeee-
Confidence            5678999999996 699999  999999999 4       9999955    9999998         678899996555 


Q ss_pred             eeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCceEecCCccccceEEEEEcCCCCCC
Q psy434          128 FLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNS  207 (307)
Q Consensus       128 kf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~PvL~I~e~~~~~~~  207 (307)
                       |++|+|+++|++++..+.++++|||||++|++||+++|+|+++||||+..+++++|+|+|||||||||||+++++....
T Consensus        64 -f~~~~W~~~g~~e~~~~~~~~~Hpdsp~tG~~WM~~~i~F~k~KltN~~~~~~~~i~L~SmhKYqPrl~I~~~~~~~~~  142 (184)
T d1h6fa_          64 -FHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKL  142 (184)
T ss_dssp             -EETTEEEEEEECCCCCCCCCEECTTCSEEHHHHTTSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCSCGGGG
T ss_pred             -EeCCcEEEcccCCCCCCCceEECCCCCcCHHHHHhCccccchhhhcCCccCcccchhHhhcccCCCeEEEEEeCCCCCC
Confidence             6899999999999999999999999999999999999999999999999999999999999999999999998765422


Q ss_pred             CCCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCC
Q psy434          208 ASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRE  251 (307)
Q Consensus       208 ~~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~  251 (307)
                        ....+++|+||||||||||+|||++|++|||++|||||||||
T Consensus       143 --~~~~~~~f~FpeT~FiAVTaYQN~~It~lKi~~NpFAkgfR~  184 (184)
T d1h6fa_         143 --PYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFAKGFRD  184 (184)
T ss_dssp             --GGSCCEEEECGGGCEEEESSCSCHHHHHHHHHHCGGGGGGCC
T ss_pred             --CccceEEEECCCeEEEEEccccchhHHHHHhccCcccccccC
Confidence              234679999999999999999999999999999999999997

PyMOL of d1h6fa_

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure