Psyllid ID: psy4375

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--
Protein Sequence
MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEETFSTFSVQSSKRPP
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHcccEEEEEccEEEccccHHcHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHcccEEEcccccccEccccccHHHHHHHHHHHHcccEEEEcccccc
Coil and Loop (DISEMBL)
MEIVHPTKRNIVKKLIAEGRlemvtggwvmtdeaTSHIFAMVDQLIEETFSTfsvqsskrpp
Flexible Loop (DISEMBL)
meivhptkrniVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEETFstfsvqsskrpp
Low Complexity Region (SEG)
MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEETFSTFSVQSSKRPP
Disordered region (IsUnstruct)
********RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEETFSTF*********
Disordered Region (DISOPRED)
*******KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEETFSTFSVQ******
Disordered Region (DISEMBL)
MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEETFS***********
Disordered Region (DISPRO)
****HPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEETFSTFSVQS*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEETFSTFSVQSSKRPP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	62	2.2.26 [Sep-21-2011]
P28494	489	Alpha-mannosidase 2 (Frag	yes	N/A	0.741	0.094	0.586	3e-10
Q16706	1144	Alpha-mannosidase 2 OS=Ho	yes	N/A	0.741	0.040	0.608	6e-10
P27046	1150	Alpha-mannosidase 2 OS=Mu	yes	N/A	0.741	0.04	0.586	2e-09
Q8BRK9	1152	Alpha-mannosidase 2x OS=M	no	N/A	0.709	0.038	0.590	2e-09
P49641	1150	Alpha-mannosidase 2x OS=H	no	N/A	0.709	0.038	0.568	3e-09
Q29451	999	Lysosomal alpha-mannosida	no	N/A	0.709	0.044	0.48	2e-07
Q60HE9	1012	Lysosomal alpha-mannosida	N/A	N/A	0.709	0.043	0.46	1e-06
Q8VHC8	1007	Lysosomal alpha-mannosida	no	N/A	0.709	0.043	0.44	2e-06
O00754	1011	Lysosomal alpha-mannosida	no	N/A	0.677	0.041	0.458	5e-06
O09159	1013	Lysosomal alpha-mannosida	no	N/A	0.709	0.043	0.44	5e-06

>sp|P28494|MA2A1_RAT Alpha-mannosidase 2 (Fragment) OS=Rattus norvegicus GN=Man2a1 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           +I+   K+  VK L+  G+LE+VTGGWVM DEAT+H FA++DQLIE
Sbjct: 190 DIIDNPKKEAVKSLLQNGQLEIVTGGWVMADEATTHYFALIDQLIE 235

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1EC: 4

>sp|Q16706|MA2A1_HUMAN Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           +I+   K++ VK LI  G+LE+VTGGWVM DEAT H FA++DQLIE
Sbjct: 224 DIIDIQKKDAVKSLIENGQLEIVTGGWVMPDEATPHYFALIDQLIE 269

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|P27046|MA2A1_MOUSE Alpha-mannosidase 2 OS=Mus musculus GN=Man2a1 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           +I+   K+  VK L+  G+LE+VTGGWVM DEAT H FA++DQLIE
Sbjct: 223 DIIDIPKKEAVKSLLQNGQLEIVTGGWVMPDEATPHYFALIDQLIE 268

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q8BRK9|MA2A2_MOUSE Alpha-mannosidase 2x OS=Mus musculus GN=Man2a2 PE=2 SV=2

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 33/44 (75%)

Query: 4   VHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           +   KR  V++L+  G+LE+ TGGWVM DEA SH FA+VDQLIE
Sbjct: 226 ISAQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALVDQLIE 269

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|P49641|MA2A2_HUMAN Alpha-mannosidase 2x OS=Homo sapiens GN=MAN2A2 PE=2 SV=3

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 4   VHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           ++  KR  V++L+  G+LE+ TGGWVM DEA SH FA++DQLIE
Sbjct: 226 INVQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALIDQLIE 269

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q29451|MA2B1_BOVIN Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B1 PE=1 SV=3

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 6/50 (12%)

Query: 9   RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL------IEETFST 52
           + IV++L+ +GRLE   GGWVM DEAT+H  A++DQ+      +EETF +
Sbjct: 137 QKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLRLRFLEETFGS 186

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q60HE9|MA2B1_MACFA Lysosomal alpha-mannosidase OS=Macaca fascicularis GN=MAN2B1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 6/50 (12%)

Query: 9   RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL------IEETFST 52
           R +V+ L+ +GRLE   GGWVM DEA +H  A+VDQ+      +E+TF +
Sbjct: 137 REVVRDLVRQGRLEFANGGWVMNDEAATHYGAIVDQMTLGLRFLEDTFGS 186

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q8VHC8|MA2B1_CAVPO Lysosomal alpha-mannosidase OS=Cavia porcellus GN=MAN2B1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 6/50 (12%)

Query: 9   RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL------IEETFST 52
           + +V++L+ +GRLE   GGWVM DEA +H  A+VDQ+      +E+TF +
Sbjct: 134 QEVVRRLVRQGRLEFANGGWVMNDEAATHYGAIVDQMTLGLRFLEDTFGS 183

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.

Cavia porcellus (taxid: 10141)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|O00754|MA2B1_HUMAN Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1 PE=1 SV=3

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 6/48 (12%)

Query: 9   RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL------IEETF 50
           + +V+ L+ +GRLE   GGWVM DEA +H  A+VDQ+      +E+TF
Sbjct: 136 QEVVRDLVRQGRLEFANGGWVMNDEAATHYGAIVDQMTLGLRFLEDTF 183

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. Cleaves all known types of alpha-mannosidic linkages.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|O09159|MA2B1_MOUSE Lysosomal alpha-mannosidase OS=Mus musculus GN=Man2b1 PE=2 SV=4

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 6/50 (12%)

Query: 9   RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL------IEETFST 52
           ++ V+ L+ +GRLE V GGWVM DEA +H  A+VDQ+      +++TF +
Sbjct: 136 QDAVRNLVRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGS 185

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	62
156551605	1111	PREDICTED: alpha-mannosidase 2-like [Nas	0.741	0.041	0.782	7e-14
340729800	1099	PREDICTED: alpha-mannosidase 2-like [Bom	0.741	0.041	0.739	2e-13
383853946	1098	PREDICTED: alpha-mannosidase 2 [Megachil	0.741	0.041	0.739	2e-13
350402150	1088	PREDICTED: alpha-mannosidase 2-like, par	0.741	0.042	0.739	2e-13
328720561	1017	PREDICTED: alpha-mannosidase 2-like [Acy	0.741	0.045	0.717	3e-13
66514147	1099	PREDICTED: alpha-mannosidase 2 [Apis mel	0.741	0.041	0.739	3e-13
380020618	1099	PREDICTED: alpha-mannosidase 2-like [Api	0.741	0.041	0.739	3e-13
307194457	141	Alpha-mannosidase IIx [Harpegnathos salt	0.709	0.312	0.75	6e-13
322800155	119	hypothetical protein SINV_01395 [Solenop	0.709	0.369	0.727	8e-13
307176942	1008	Alpha-mannosidase 2 [Camponotus floridan	0.693	0.042	0.744	2e-12

>gi|156551605|ref|XP_001602695.1| PREDICTED: alpha-mannosidase 2-like [Nasonia vitripennis]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/46 (78%), Positives = 41/46 (89%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           E  HPTK+ IVK+L+ EGRLEM TGGWVMTDEATSHI+AM+DQLIE
Sbjct: 189 ESAHPTKKMIVKRLVKEGRLEMTTGGWVMTDEATSHIYAMLDQLIE 234

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729800|ref|XP_003403183.1| PREDICTED: alpha-mannosidase 2-like [Bombus terrestris]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 41/46 (89%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           E  HPTK+ +VK+L+ +GRLEM TGGWVMTDEATSHI+AM+DQLIE
Sbjct: 184 ESAHPTKKMVVKRLVKDGRLEMTTGGWVMTDEATSHIYAMLDQLIE 229

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853946|ref|XP_003702483.1| PREDICTED: alpha-mannosidase 2 [Megachile rotundata]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 41/46 (89%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           E  HPTK+ +VK+L+ +GRLEM TGGWVMTDEATSHI+AM+DQLIE
Sbjct: 184 ESAHPTKKMVVKRLVKDGRLEMTTGGWVMTDEATSHIYAMLDQLIE 229

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402150|ref|XP_003486384.1| PREDICTED: alpha-mannosidase 2-like, partial [Bombus impatiens]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 41/46 (89%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           E  HPTK+ +VK+L+ +GRLEM TGGWVMTDEATSHI+AM+DQLIE
Sbjct: 173 ESAHPTKKMVVKRLVKDGRLEMTTGGWVMTDEATSHIYAMLDQLIE 218

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720561|ref|XP_001947614.2| PREDICTED: alpha-mannosidase 2-like [Acyrthosiphon pisum]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/46 (71%), Positives = 42/46 (91%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           E  HPTK+ +V++L+AEGRLE+ TGGWVMTDEAT+HI+AM+DQLIE
Sbjct: 83  ESAHPTKKKVVQRLLAEGRLEITTGGWVMTDEATTHIYAMLDQLIE 128

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66514147|ref|XP_396290.2| PREDICTED: alpha-mannosidase 2 [Apis mellifera]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/46 (73%), Positives = 41/46 (89%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           E  HPTK+ +VK+L+ +GRLEM TGGWVMTDEATSHI+AM+DQLIE
Sbjct: 184 ESAHPTKKMVVKRLVKDGRLEMTTGGWVMTDEATSHIYAMLDQLIE 229

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020618|ref|XP_003694179.1| PREDICTED: alpha-mannosidase 2-like [Apis florea]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/46 (73%), Positives = 41/46 (89%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           E  HPTK+ +VK+L+ +GRLEM TGGWVMTDEATSHI+AM+DQLIE
Sbjct: 184 ESAHPTKKMVVKRLVKDGRLEMTTGGWVMTDEATSHIYAMLDQLIE 229

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194457|gb|EFN76755.1| Alpha-mannosidase IIx [Harpegnathos saltator]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 40/44 (90%)

Query: 4   VHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
            HPTK+ +VK+L+ +GRLEM TGGWVMTDEATSHI+AM+DQLIE
Sbjct: 59  AHPTKKMVVKRLVKDGRLEMTTGGWVMTDEATSHIYAMLDQLIE 102

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800155|gb|EFZ21240.1| hypothetical protein SINV_01395 [Solenopsis invicta]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 40/44 (90%)

Query: 4   VHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
            HPTK+ ++K+L+ +GRLEM TGGWVMTDEATSHI+AM+DQLIE
Sbjct: 59  AHPTKKMVIKRLVKDGRLEMTTGGWVMTDEATSHIYAMLDQLIE 102

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176942|gb|EFN66248.1| Alpha-mannosidase 2 [Camponotus floridanus]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/43 (74%), Positives = 39/43 (90%)

Query: 5   HPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           HPTK+ +VK+L+ +GRLEM TGGWVMTDEAT HI+AM+DQLIE
Sbjct: 95  HPTKKMVVKRLVKDGRLEMTTGGWVMTDEATCHIYAMLDQLIE 137

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	62
FB|FBgn0026616	1249	alpha-Man-IIb "alpha-Man-IIb"	0.693	0.034	0.651	6.8e-10
RGD|3038	489	Man2a1 "mannosidase, alpha, cl	0.741	0.094	0.586	8e-10
UNIPROTKB|H0YKQ2	197	MAN2A2 "Alpha-mannosidase 2x"	0.709	0.223	0.568	8.4e-10
UNIPROTKB|F1NXU9	929	F1NXU9 "Uncharacterized protei	0.645	0.043	0.7	1.6e-09
UNIPROTKB|G3V7Y9	1148	Man2a1 "Alpha-mannosidase 2" [	0.741	0.040	0.586	2.7e-09
UNIPROTKB|Q16706	1144	MAN2A1 "Alpha-mannosidase 2" [	0.741	0.040	0.608	3.4e-09
MGI|MGI:104669	1150	Man2a1 "mannosidase 2, alpha 1	0.741	0.04	0.586	7.1e-09
UNIPROTKB|F6V049	1150	MAN2A2 "Uncharacterized protei	0.741	0.04	0.565	9.1e-09
UNIPROTKB|E2QT95	1153	MAN2A2 "Uncharacterized protei	0.741	0.039	0.565	9.1e-09
UNIPROTKB|F1NKR1	1110	MAN2A1 "Uncharacterized protei	0.645	0.036	0.6	1.2e-08

FB|FBgn0026616 alpha-Man-IIb "alpha-Man-IIb" [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query:     5 HPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
             HPTK+  +K+LI  GR+E+ TGGWVMTDEA  HI+ M+DQLIE
Sbjct:   229 HPTKQRALKRLIDAGRIEITTGGWVMTDEANVHIYPMLDQLIE 271

GO:0004559 "alpha-mannosidase activity" evidence=ISS;NAS

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=ISS

GO:0000139 "Golgi membrane" evidence=ISS

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0035010 "encapsulation of foreign target" evidence=IMP

RGD|3038 Man2a1 "mannosidase, alpha, class 2A, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query:     2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
             +I+   K+  VK L+  G+LE+VTGGWVM DEAT+H FA++DQLIE
Sbjct:   190 DIIDNPKKEAVKSLLQNGQLEIVTGGWVMADEATTHYFALIDQLIE 235

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0006491 "N-glycan processing" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0007033 "vacuole organization" evidence=ISO

GO:0007585 "respiratory gaseous exchange" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015923 "mannosidase activity" evidence=ISO

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=ISO

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048286 "lung alveolus development" evidence=ISO

UNIPROTKB|H0YKQ2 MAN2A2 "Alpha-mannosidase 2x" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query:     4 VHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
             ++  KR  V++L+  G+LE+ TGGWVM DEA SH FA++DQLIE
Sbjct:   105 INVQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALIDQLIE 148

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

UNIPROTKB|F1NXU9 F1NXU9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query:     8 KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
             KR  V++L+  G+LEMVTGGWVM DEA SH FAM+DQLIE
Sbjct:   111 KRAAVRRLVGNGQLEMVTGGWVMPDEANSHYFAMIDQLIE 150

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

UNIPROTKB|G3V7Y9 Man2a1 "Alpha-mannosidase 2" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query:     2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
             +I+   K+  VK L+  G+LE+VTGGWVM DEAT+H FA++DQLIE
Sbjct:   223 DIIDNPKKEAVKSLLQNGQLEIVTGGWVMADEATTHYFALIDQLIE 268

GO:0000139 "Golgi membrane" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0007033 "vacuole organization" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

UNIPROTKB|Q16706 MAN2A1 "Alpha-mannosidase 2" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query:     2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
             +I+   K++ VK LI  G+LE+VTGGWVM DEAT H FA++DQLIE
Sbjct:   224 DIIDIQKKDAVKSLIENGQLEIVTGGWVMPDEATPHYFALIDQLIE 269

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0007033 "vacuole organization" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0000139 "Golgi membrane" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

MGI|MGI:104669 Man2a1 "mannosidase 2, alpha 1" [Mus musculus (taxid:10090)]

 Score = 146 (56.5 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query:     2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
             +I+   K+  VK L+  G+LE+VTGGWVM DEAT H FA++DQLIE
Sbjct:   223 DIIDIPKKEAVKSLLQNGQLEIVTGGWVMPDEATPHYFALIDQLIE 268

GO:0000139 "Golgi membrane" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IGI

GO:0001889 "liver development" evidence=IGI

GO:0003824 "catalytic activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IGI

GO:0007005 "mitochondrion organization" evidence=IGI

GO:0007033 "vacuole organization" evidence=IGI

GO:0007585 "respiratory gaseous exchange" evidence=IGI

GO:0008152 "metabolic process" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015923 "mannosidase activity" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IGI

UNIPROTKB|F6V049 MAN2A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 145 (56.1 bits), Expect = 9.1e-09, P = 9.1e-09
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query:     2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
             E ++  K+  V++L+  G+LE+VTGGWVM DEA SH FA++DQLIE
Sbjct:   224 ENINAQKKAAVRRLVGNGQLEIVTGGWVMPDEANSHYFALIDQLIE 269

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

UNIPROTKB|E2QT95 MAN2A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 145 (56.1 bits), Expect = 9.1e-09, P = 9.1e-09
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query:     2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
             E ++  K+  V++L+  G+LE+VTGGWVM DEA SH FA++DQLIE
Sbjct:   224 ENINAQKKAAVRRLVGNGQLEIVTGGWVMPDEANSHYFALIDQLIE 269

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

UNIPROTKB|F1NKR1 MAN2A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 24/40 (60%), Positives = 35/40 (87%)

Query:     8 KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
             +R+ VK+LI +G+ E+VTGGWVM DEA++H F+++DQLIE
Sbjct:   189 RRDAVKRLIKDGQFEIVTGGWVMPDEASAHYFSLIDQLIE 228

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0007033 "vacuole organization" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P27046	MA2A1_MOUSE	3, ., 2, ., 1, ., 1, 1, 4	0.5869	0.7419	0.04	yes	N/A
P28494	MA2A1_RAT	3, ., 2, ., 1, ., 1, 1, 4	0.5869	0.7419	0.0940	yes	N/A
Q16706	MA2A1_HUMAN	3, ., 2, ., 1, ., 1, 1, 4	0.6086	0.7419	0.0402	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	62
cd10809	340	cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal	1e-22
cd11666	344	cd11666, GH38N_Man2A1, N-terminal catalytic domain	1e-15
cd10810	278	cd10810, GH38N_AMII_LAM_like, N-terminal catalytic	1e-15
cd11667	344	cd11667, GH38N_Man2A2, N-terminal catalytic domain	2e-15
pfam01074	269	pfam01074, Glyco_hydro_38, Glycosyl hydrolases fam	6e-15
cd00451	258	cd00451, GH38N_AMII_euk, N-terminal catalytic doma	3e-14
PLN02701	1050	PLN02701, PLN02701, alpha-mannosidase	7e-12
cd10786	251	cd10786, GH38N_AMII_like, N-terminal catalytic dom	5e-08
cd10811	326	cd10811, GH38N_AMII_Epman_like, N-terminal catalyt	5e-07

>gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 87.3 bits (217), Expect = 1e-22
 Identities = 30/43 (69%), Positives = 35/43 (81%)

Query: 5   HPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
            P K+  VKKL+  G+LE+VTGGWVMTDEA SH FAM+DQLIE
Sbjct: 63  SPDKKEAVKKLVKNGQLEIVTGGWVMTDEANSHYFAMIDQLIE 105

This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. This subfamily also includes human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII, and is thought to also function in the N-glycosylation pathway. Also found in this subfamily is class II alpha-mannosidase encoded by Spodoptera frugiperda Sf9 cell. This alpha-mannosidase is an integral membrane glycoprotein localized in the Golgi apparatus. It shows high sequence homology with mammalian Golgi alpha-mannosidase II(GMII). It can hydrolyze p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man), and it is inhibited by swainsonine. However, the Sf9 enzyme is stimulated by cobalt and can hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from that of GMII. Thus, this enzyme has been designated as Sf9 alpha-mannosidase III (SfManIII). It probably functions in an alternate N-glycan processing pathway in Sf9 cells. Length = 340

>gnl|CDD|212131 cd11666, GH38N_Man2A1, N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 68.5 bits (167), Expect = 1e-15
 Identities = 28/46 (60%), Positives = 38/46 (82%)

Query: 2   EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           +I+   K++ VK+LI  G+LE+VTGGWVM DEAT+H FA++DQLIE
Sbjct: 60  DIIDGQKKDAVKRLIENGQLEIVTGGWVMPDEATAHYFALIDQLIE 105

This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal of both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 344

>gnl|CDD|212121 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 67.6 bits (166), Expect = 1e-15
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 6/51 (11%)

Query: 6   PTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL------IEETF 50
              R  VKKL+  G+LE + GGW M DEAT+H   ++DQ+      +++TF
Sbjct: 71  EDTRQKVKKLVKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDTF 121

The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base. Length = 278

>gnl|CDD|212132 cd11667, GH38N_Man2A2, N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 67.7 bits (165), Expect = 2e-15
 Identities = 27/44 (61%), Positives = 34/44 (77%)

Query: 4   VHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           ++  KR  V++L+  G+LEM TGGWVM DEA SH FAM+DQLIE
Sbjct: 62  INAQKRAAVRRLVGNGQLEMATGGWVMPDEANSHYFAMIDQLIE 105

This subfamily is represented by human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII (found in another subfamily), and as an isoenzyme of GMII. It is thought to also function in the N-glycosylation pathway. MX specifically hydrolyzes the same oligosaccharide substrate as does MII. It specifically removes two mannosyl residues from GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine). Length = 344

>gnl|CDD|216284 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal domain

 Score = 65.7 bits (161), Expect = 6e-15
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 5   HPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
            P     +KKL+AEGRLE V GGWV  DE      +++ QL+ 
Sbjct: 59  QPELFKKIKKLVAEGRLEPVGGGWVEPDENLPSGESLIRQLLY 101

Glycosyl hydrolases are key enzymes of carbohydrate metabolism. Length = 269

>gnl|CDD|212095 cd00451, GH38N_AMII_euk, N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38)

 Score = 63.8 bits (156), Expect = 3e-14
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 6   PTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL------IEETFST 52
              +   KKL+  G+LE V GGWVM DEA +   +++DQ+      +++TF  
Sbjct: 63  NDTKQQFKKLVKNGQLEFVGGGWVMNDEACTTYESIIDQMTEGHQFLKDTFGV 115

The family corresponds to a group of eukaryotic class II alpha-mannosidases (AlphaMII), which contain Golgi alpha-mannosidases II (GMII), the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), the noval core-specific lysosomal alpha 1,6-mannosidases (Epman, MAN2B2), and similar proteins. GMII catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2 (GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. LAM is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. Different from LAM, Epman can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 258

>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase

 Score = 57.5 bits (139), Expect = 7e-12
 Identities = 22/42 (52%), Positives = 31/42 (73%)

Query: 6   PTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           P+K+    KL+  G+LE+V GGWVM DEA SH FA+++Q+ E
Sbjct: 102 PSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITE 143

Length = 1050

>gnl|CDD|212098 cd10786, GH38N_AMII_like, N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 46.6 bits (111), Expect = 5e-08
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 4   VHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           V P  +  +K+ +  GRLE+  GG+VM D       ++V Q++ 
Sbjct: 59  VRPDLKAKLKQAVRSGRLEIAGGGYVMPDTNLPDGESLVRQILL 102

Alpha-mannosidases (EC 3.2.1.24) are extensively found in eukaryotes and play important roles in the processing of newly formed N-glycans and in degradation of mature glycoproteins. A deficiency of this enzyme causes the lysosomal storage disease alpha-mannosidosis. Many bacterial and archaeal species also possess putative alpha-mannosidases, but their activity and specificity is largely unknown. Based on different functional characteristics and sequence homology, alpha-mannosidases have been organized into two classes (class I, belonging to glycoside hydrolase family 47, and class II, belonging to glycoside hydrolase family 38). Members of this family corresponds to class II alpha-mannosidases (alphaMII), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 251

>gnl|CDD|212122 cd10811, GH38N_AMII_Epman_like, N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 43.7 bits (103), Expect = 5e-07
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 6/45 (13%)

Query: 12  VKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE------ETF 50
           V++L++EGRLE V GG VM DEA + +   + QL E      ETF
Sbjct: 70  VRQLLSEGRLEFVIGGQVMHDEAVTELDDQILQLTEGHGFLYETF 114

The subfamily is represented by a novel human core-specific lysosomal alpha 1,6-mannosidase (Epman, Man2B2) and similar proteins. Although it was previously named as epididymal alpha-mannosidase, Epman has a broadly distributed transcript expression profile. Different from the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), Epman is not associated with genetic alpha-mannosidosis that is caused by the absence of LAM. Furthermore, Epman has unique substrate specificity. It can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. In contrast, the major LAM can cleave all of the alpha-linked mannose residues from high mannose oligosaccharides except the core alpha 1,6-linked mannose residue. Moreover, it is suggested that the catalytic activity of Epman is dependent on prior action by di-N-acetyl-chitobiase (chitobiase), which indicates there is a functional cooperation between these two enzymes for the full and efficient catabolism of mammalian lysosomal N-glycan core structures. Epman has an acidic pH optimum. It is strongly stimulated by cobalt or zinc ions and strongly inhibited by furanose analogues swainsonine (SW) and 1,4-dideoxy-1,4-imino-d-mannitol (DIM). Length = 326

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	62
KOG1959|consensus	996		99.9
PLN02701	1050	alpha-mannosidase	99.84
KOG1958|consensus	1129		99.79
PF01074	275	Glyco_hydro_38: Glycosyl hydrolases family 38 N-te	99.58
PRK09819	875	alpha-mannosidase; Provisional	99.31
PF03065	360	Glyco_hydro_57: Glycosyl hydrolase family 57; Inte	96.64
KOG4342|consensus	1078		95.83
PF01522	123	Polysacc_deac_1: Polysaccharide deacetylase; Inter	92.48
PF08672	60	APC2: Anaphase promoting complex (APC) subunit 2;	89.55
TIGR02764	191	spore_ybaN_pdaB polysaccharide deacetylase family	88.26
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	84.08

>KOG1959|consensus

Probab=99.90  E-value=1.1e-24  Score=175.98  Aligned_cols=57  Identities=40%  Similarity=0.625  Sum_probs=54.5

Q ss_pred             CcCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcc--cccC
Q psy4375           2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFS--VQSS   58 (62)
Q Consensus         2 d~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fg--v~p~   58 (62)
                      ++|++++|.+||+||++||||||||||||||||++||.|||||+|.||   .+|||  .+||
T Consensus       103 ~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPr  164 (996)
T KOG1959|consen  103 NEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPR  164 (996)
T ss_pred             HhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence            479999999999999999999999999999999999999999999999   99999  6665

>PLN02701 alpha-mannosidase

Probab=99.84  E-value=1.4e-21  Score=158.76  Aligned_cols=57  Identities=42%  Similarity=0.750  Sum_probs=54.7

Q ss_pred             CcCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC
Q psy4375           2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus         2 d~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      ++++++.|++||+||++||||||+|||||+|||++||++||+||++||   .++||+.|+
T Consensus        98 ~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~  157 (1050)
T PLN02701         98 RDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPK  157 (1050)
T ss_pred             HhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCC
Confidence            578999999999999999999999999999999999999999999999   599999985

>KOG1958|consensus

Probab=99.79  E-value=8.7e-20  Score=148.75  Aligned_cols=58  Identities=53%  Similarity=0.867  Sum_probs=54.4

Q ss_pred             CcCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccCC
Q psy4375           2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSSK   59 (62)
Q Consensus         2 d~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~~   59 (62)
                      +++++++|++||+||++||||||+|||||+|||++||.++|+|+++||   ..+.||.|+.
T Consensus       221 ~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s  281 (1129)
T KOG1958|consen  221 DDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQS  281 (1129)
T ss_pred             hhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCc
Confidence            578999999999999999999999999999999999999999999999   7778888864

>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3

Probab=99.58  E-value=2e-15  Score=104.04  Aligned_cols=54  Identities=31%  Similarity=0.465  Sum_probs=44.4

Q ss_pred             ChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC
Q psy4375           5 HPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus         5 ~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      .++.++.+++||++||||||+|+|||+||++++.+++|+||+.||   .++||++|+
T Consensus        59 ~p~~~~~~~~lv~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~  115 (275)
T PF01074_consen   59 APEEFKRIKKLVKEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPK  115 (275)
T ss_dssp             SGHHHHHHHHHHHTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--S
T ss_pred             CCHHHHHHHHHHHhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCC
Confidence            455566669999999999999999999999999999999999999   689998875

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....

>PRK09819 alpha-mannosidase; Provisional

Probab=99.31  E-value=2.3e-12  Score=102.48  Aligned_cols=53  Identities=28%  Similarity=0.473  Sum_probs=48.9

Q ss_pred             CChHHHHHHHHHHHcCceeEEecce-eecccccccHHHHHHHHhhhh--hhhcccccC
Q psy4375           4 VHPTKRNIVKKLIAEGRLEMVTGGW-VMTDEATSHIFAMVDQLIEET--FSTFSVQSS   58 (62)
Q Consensus         4 ~~~~~k~~vk~LV~~GqlEfv~GGW-vm~DEA~~~y~~~Idq~t~Gh--~~~Fgv~p~   58 (62)
                      ..++.+++||+||++|||  +.||| ||+||++++++|+|+||+.||  +++||+.|+
T Consensus        64 ~~Pe~~~~ik~lV~~Grl--~~G~W~v~~D~~l~sgEsliRqll~G~~~~~~fG~~~~  119 (875)
T PRK09819         64 VKPEDKERVKKLVQAGKL--IIGPWYTQTDQLVVSGESIVRNLLYGIRDCREFGEPMK  119 (875)
T ss_pred             hChHHHHHHHHHHHcCCE--eECcEEeecccccCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence            468899999999999999  56999 899999999999999999999  899998874

>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3

Probab=96.64  E-value=0.0039  Score=45.18  Aligned_cols=50  Identities=12%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             HHHHHHHHHcCceeEEecceeeccccccc-HHHHHHHHhhhh---hhhcccccC
Q psy4375           9 RNIVKKLIAEGRLEMVTGGWVMTDEATSH-IFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus         9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~-y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      =+.+|+|+++|++|++++++.-+==..-. ..++..|+..|.   .+.||++|+
T Consensus       113 i~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~  166 (360)
T PF03065_consen  113 IEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPR  166 (360)
T ss_dssp             HHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--S
T ss_pred             HHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            46789999999999999998653222222 366889998888   888999986

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.

>KOG4342|consensus

Probab=95.83  E-value=0.016  Score=48.38  Aligned_cols=53  Identities=21%  Similarity=0.356  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC
Q psy4375           6 PTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus         6 ~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      +.-=+.++..+..||+-=|+|-||-+|--.|+=++++.|+..|.   ..+||++-+
T Consensus       341 P~~f~kl~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~  396 (1078)
T KOG4342|consen  341 PGLFSKLQEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCS  396 (1078)
T ss_pred             hhHHHHHHHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhc
Confidence            33445688899999999999999999999999999999999999   788888754

>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase

Probab=92.48  E-value=0.44  Score=28.27  Aligned_cols=50  Identities=14%  Similarity=0.155  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC
Q psy4375           8 KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus         8 ~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      ..+.++.|.++| .||-+-||.-.+-......++.++|....   .+.+|..|+
T Consensus        46 ~~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~   98 (123)
T PF01522_consen   46 YPDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSREILEEITGRPPK   98 (123)
T ss_dssp             HHHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHHHHHHHHHSSEES
T ss_pred             ccccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            357899999999 99999999988888888888899988887   444666543

This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....

>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase

Probab=89.55  E-value=0.44  Score=27.67  Aligned_cols=24  Identities=25%  Similarity=0.549  Sum_probs=17.9

Q ss_pred             ChHHHHHHHHHHHcCceeEEecce
Q psy4375           5 HPTKRNIVKKLIAEGRLEMVTGGW   28 (62)
Q Consensus         5 ~~~~k~~vk~LV~~GqlEfv~GGW   28 (62)
                      .++-+.-+.+||++|+||+++|-|
T Consensus        35 ~~eL~~fL~~lv~e~~L~~~~G~Y   58 (60)
T PF08672_consen   35 LEELQEFLDRLVEEGKLECSGGSY   58 (60)
T ss_dssp             HHHHHHHHHHHHHTTSEE--TTEE
T ss_pred             HHHHHHHHHHHHHCCcEEecCCEE
Confidence            456677899999999999997755

The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.

>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB

Probab=88.26  E-value=1.4  Score=28.86  Aligned_cols=53  Identities=17%  Similarity=0.316  Sum_probs=40.2

Q ss_pred             HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccCC-CCC
Q psy4375           9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSSK-RPP   62 (62)
Q Consensus         9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~~-~~~   62 (62)
                      .+.+++++++|. ||-+-+|.-.+-..-....+..+|..+.   .+..|..|+- |||
T Consensus        48 ~~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~~fr~P  104 (191)
T TIGR02764        48 PELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTGKKPTLFRPP  104 (191)
T ss_pred             HHHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCCEEECC
Confidence            468999999995 9999999877665566677888888877   4556776642 555

This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=84.08  E-value=2.2  Score=23.72  Aligned_cols=29  Identities=31%  Similarity=0.410  Sum_probs=25.9

Q ss_pred             ChHHHHHHHHHHHcCceeEEecceeeccc
Q psy4375           5 HPTKRNIVKKLIAEGRLEMVTGGWVMTDE   33 (62)
Q Consensus         5 ~~~~k~~vk~LV~~GqlEfv~GGWvm~DE   33 (62)
                      ..+.|..+..|.+.|.+.-+-||++..++
T Consensus        28 ~~TiRRDl~~L~~~g~i~r~~GG~~~~~~   56 (57)
T PF08220_consen   28 EMTIRRDLNKLEKQGLIKRTHGGAVLNDS   56 (57)
T ss_pred             HHHHHHHHHHHHHCCCEEEEcCEEEeCCC
Confidence            46778899999999999999999998775

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	62
1o7d_A	298	The Structure Of The Bovine Lysosomal A-Mannosidase		2e-08
1hxk_A	1015	Golgi Alpha-Mannosidase Ii In Complex With Deoxyman		7e-05
1ps3_A	1045	Golgi Alpha-mannosidase Ii In Complex With Kifunens		7e-05
1qwn_A	1045	Golgi Alpha-Mannosidase Ii Covalent Intermediate Co		8e-05
1qwu_A	1045	Golgi Alpha-Mannosidase Ii D341n Mutant Complex Wit		8e-05
3dx3_A	1045	Golgi Alpha-Mannosidase Ii In Complex With Mannosta		8e-05
3cv5_A	1045	Golgi Mannosidase Ii D204a Catalytic Nucleophile Mu		8e-05
1hty_A	1015	Golgi Alpha-Mannosidase Ii Length = 1015		5e-04

>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 6/50 (12%)
Query: 9   RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL------IEETFST 52
           + IV++L+ +GRLE   GGWVM DEAT+H  A++DQ+      +EETF +
Sbjct: 87  QKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGS 136

>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Deoxymannojirimicin Length = 1015

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 8   KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           K+  +K ++  G+LE VTGGWVM DEA SH   ++ QL E
Sbjct: 115 KKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTE 154

>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine Length = 1045

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 8   KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           K+  +K ++  G+LE VTGGWVM DEA SH   ++ QL E
Sbjct: 145 KKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTE 184

>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex With 5- Fluoro-Gulosyl-Fluoride Length = 1045

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 8   KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           K+  +K ++  G+LE VTGGWVM DEA SH   ++ QL E
Sbjct: 145 KKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTE 184

>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With 5-F-Guloside Length = 1045

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 8   KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           K+  +K ++  G+LE VTGGWVM DEA SH   ++ QL E
Sbjct: 145 KKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTE 184

>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin Analog (1r,2r, 3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol Length = 1045

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 8   KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           K+  +K ++  G+LE VTGGWVM DEA SH   ++ QL E
Sbjct: 145 KKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTE 184

>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant Complex With 3alpha,6alpha-Mannopentaose Length = 1045

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 8   KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           K+  +K ++  G+LE VTGGWVM DEA SH   ++ QL E
Sbjct: 145 KKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTE 184

>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii Length = 1015

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 13  KKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
           K ++  G+LE VTGGWV  DEA SH   ++ QL E
Sbjct: 120 KSIVKNGQLEFVTGGWVXPDEANSHWRNVLLQLTE 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	62
3bvx_A	1045	Alpha-mannosidase 2; family 38 glycoysl hydrolase,	9e-13
1o7d_A	298	Lysosomal alpha-mannosidase; hydrolase, glycosyl h	3e-12
2wyh_A	923	Alpha-mannosidase; hydrolase, glycosidase, glycosi	5e-10
3lvt_A	899	Glycosyl hydrolase, family 38; PSI, MCSG, structur	6e-09

>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Length = 1045

 Score = 59.9 bits (144), Expect = 9e-13
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 1   MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL------IEETFSTFS 54
              +   K+  +K ++  G+LE VTGGWVM DEA SH   ++ QL      +++  +   
Sbjct: 138 YHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTP 197

>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 Length = 298

 Score = 57.7 bits (139), Expect = 3e-12
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 6/56 (10%)

Query: 1   MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL------IEETF 50
                   + IV++L+ +GRLE   GGWVM DEAT+H  A++DQ+      +EETF
Sbjct: 79  WRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETF 134

>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Length = 923

 Score = 51.8 bits (123), Expect = 5e-10
 Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 1   MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLI 46
              V P +   +++ IA G+L  +   +++ D+  +   + V  ++
Sbjct: 83  YLKVRPEREPEIRQAIASGKLR-IGPFYILQDDFLTSSESNVRNML 127

>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Length = 899

 Score = 49.1 bits (116), Expect = 6e-09
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 1   MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLI 46
              V P K+  VKK +  G+L+ +   +++ D+      + V  ++
Sbjct: 64  YLQVRPEKKEAVKKAVQAGKLK-IGPFYILQDDFLISSESNVRNML 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	62
1o7d_A	298	Lysosomal alpha-mannosidase; hydrolase, glycosyl h	99.77
3bvx_A	1045	Alpha-mannosidase 2; family 38 glycoysl hydrolase,	99.73
3lvt_A	899	Glycosyl hydrolase, family 38; PSI, MCSG, structur	99.56
2wyh_A	923	Alpha-mannosidase; hydrolase, glycosidase, glycosi	99.54
1k1x_A	659	4-alpha-glucanotransferase; 2.40A {Thermococcus li	97.72
3p0b_A	540	TT1467 protein; glycoside hydrolase GH57, glycogen	96.24
3n98_A	562	Alpha-amylase, GH57 family; GH57 family member, br	96.11
2b5d_X	528	Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.	95.8
2cc0_A	195	Acetyl-xylan esterase; hydrolase, carbohydrate est	89.08
2c71_A	216	Glycoside hydrolase, family 11\:clostridium cellul	87.8
2iw0_A	254	Chitin deacetylase; hydrolase, chitin DE-N-acetyla	84.77
1ldd_A	74	APC2WHB, anaphase promoting complex; ubiquitin, li	83.12
2y8u_A	230	Chitin deacetylase; hydrolase; 1.99A {Emericella n	82.23

>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1

Probab=99.77  E-value=1.6e-19  Score=128.62  Aligned_cols=57  Identities=39%  Similarity=0.637  Sum_probs=53.5

Q ss_pred             CcCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccc--cC
Q psy4375           2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQ--SS   58 (62)
Q Consensus         2 d~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~--p~   58 (62)
                      ++++++.++.||+||++||||||+|||||+|||+++++|+|+||+.||   .++||+.  |+
T Consensus        80 ~~~~Pe~~~~vk~lV~~Grle~vgG~wve~D~~~~~~eslirQl~~G~~~~~~~fG~~~~~~  141 (298)
T 1o7d_A           80 RQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPR  141 (298)
T ss_dssp             HTSCHHHHHHHHHHHHTTSEEESSCSSSCBCSSSCCHHHHHHHHHHHHHHHHHHHGGGGCCS
T ss_pred             HhcCHHHHHHHHHHHHCCCEEEECceeeccccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            468899999999999999999999999999999999999999999999   5689997  64

>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...

Probab=99.73  E-value=1.3e-18  Score=138.72  Aligned_cols=57  Identities=37%  Similarity=0.542  Sum_probs=53.8

Q ss_pred             CcCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC
Q psy4375           2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus         2 d~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      ++++++.++.||+||++|||||++|||||+|||+++|+|+|+||+.||   .++||+.|+
T Consensus       139 ~e~~Pe~~~~vk~lV~~Grle~~gG~Wv~~De~~~~~EslirQl~~G~~~~~~~FG~~~~  198 (1045)
T 3bvx_A          139 HDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPT  198 (1045)
T ss_dssp             HHSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHCCHHHHHHHHHHHhCCCEEEECCccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            468899999999999999999999999999999999999999999999   568999875

>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}

Probab=99.56  E-value=1.4e-15  Score=119.54  Aligned_cols=55  Identities=18%  Similarity=0.292  Sum_probs=50.8

Q ss_pred             cCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh--hhhcccccC
Q psy4375           3 IVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET--FSTFSVQSS   58 (62)
Q Consensus         3 ~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh--~~~Fgv~p~   58 (62)
                      ++.++.++.||+||++|||| |+|+|||+||++++++++|+||+.||  +++||++|+
T Consensus        66 ~~~p~~~~~vk~lv~~Gr~e-igg~~v~~D~~~~~~es~irq~~~G~~~~~~fG~~~~  122 (899)
T 3lvt_A           66 QVRPEKKEAVKKAVQAGKLK-IGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQ  122 (899)
T ss_dssp             HHCGGGHHHHHHHHHTTSEE-CCSBSSCCCGGGSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             hhCHHHHHHHHHHHHcCCEE-ECchhccccccCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence            46789999999999999999 89999999999999999999999999  445999886

>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*

Probab=99.54  E-value=2.4e-15  Score=117.86  Aligned_cols=54  Identities=17%  Similarity=0.370  Sum_probs=49.5

Q ss_pred             cCChHHHHHHHHHHHcCceeEEecce-eecccccccHHHHHHHHhhhh--hhhcccccC
Q psy4375           3 IVHPTKRNIVKKLIAEGRLEMVTGGW-VMTDEATSHIFAMVDQLIEET--FSTFSVQSS   58 (62)
Q Consensus         3 ~~~~~~k~~vk~LV~~GqlEfv~GGW-vm~DEA~~~y~~~Idq~t~Gh--~~~Fgv~p~   58 (62)
                      ++.++.++.||+||++|||||  ||| ||+|||+++++|+|+||+.||  +++||+.|+
T Consensus        85 ~~~p~~~~~vk~lV~~Grlei--G~wYv~~D~~~~~~es~irq~~~G~~~~~~fG~~~~  141 (923)
T 2wyh_A           85 KVRPEREPEIRQAIASGKLRI--GPFYILQDDFLTSSESNVRNMLIGKEDCDRWGASVP  141 (923)
T ss_dssp             HHCGGGHHHHHHHHHTTSEEC--CSBSSCBCSTTSCHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred             HHCHHHHHHHHHHHHcCCEEE--eeeeeccccccCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence            357899999999999999996  999 999999999999999999999  444999886

>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*

Probab=97.72  E-value=4.9e-05  Score=58.86  Aligned_cols=54  Identities=19%  Similarity=0.219  Sum_probs=47.9

Q ss_pred             ChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh--hhhcccccC
Q psy4375           5 HPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET--FSTFSVQSS   58 (62)
Q Consensus         5 ~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh--~~~Fgv~p~   58 (62)
                      .++.-+.+|+|+++|++|+++|+|+-++=....-.+++.|+..|.  ++.||++|+
T Consensus        62 ~p~l~~~ik~l~~~G~vE~l~~~~~Hpi~~l~p~e~~~~QI~~g~~~~~~FG~~P~  117 (659)
T 1k1x_A           62 KPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYARKLGYDAK  117 (659)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEBCCTTCCCGGGSCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CHHHHHHHHHHHHCCCEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            455667899999999999999999999988888899999999988  559999985

>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A

Probab=96.24  E-value=0.0055  Score=47.25  Aligned_cols=52  Identities=13%  Similarity=0.050  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCceeEEecceeecccccc-cHHHHHHHHhhhh---hhhcccccC
Q psy4375           7 TKRNIVKKLIAEGRLEMVTGGWVMTDEATS-HIFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus         7 ~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~-~y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      +.=..+|+|++.|++||+++++.-.--..- .-.++..|+..|.   .+.||.+|+
T Consensus       143 dii~~fr~L~~~G~iEiit~~~tH~~lPLl~~~e~~~~QI~~g~~~~~~~FG~~P~  198 (540)
T 3p0b_A          143 DLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWAQIKTGVSTYRRHFAKDPT  198 (540)
T ss_dssp             CHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHHHCCCEEEEcCCchhhHHhcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            345679999999999999999987766655 4688899999988   899999986

>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A*

Probab=96.11  E-value=0.0072  Score=46.79  Aligned_cols=52  Identities=13%  Similarity=0.078  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHcCceeEEecceeeccccccc-HHHHHHHHhhhh---hhhcccccC
Q psy4375           7 TKRNIVKKLIAEGRLEMVTGGWVMTDEATSH-IFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus         7 ~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~-y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      +.-..+|+|++.|++||+++++.-.--..-. -.++..|+..|.   .+.||.+|+
T Consensus       122 dii~~fr~L~~~G~iElit~~~tH~~lPLl~~~e~~~~QI~~g~~~~~~~FG~~P~  177 (562)
T 3n98_A          122 DIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPK  177 (562)
T ss_dssp             CHHHHHHHHHHTTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHHHHHHHCCCEEEEcCCchhhHhhcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            3456799999999999999999877665543 678889999888   899999986

>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4

Probab=95.80  E-value=0.012  Score=44.39  Aligned_cols=49  Identities=16%  Similarity=0.003  Sum_probs=38.7

Q ss_pred             HHHHHHHHcCceeEEecceeecccccc--cHHHHHHHHhhhh---hhhcccccC
Q psy4375          10 NIVKKLIAEGRLEMVTGGWVMTDEATS--HIFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus        10 ~~vk~LV~~GqlEfv~GGWvm~DEA~~--~y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      ..+|+|.+.|++||++++..-.==..-  +-.++..|+..|-   .+.||.+|+
T Consensus       126 ~~~r~L~~~G~vEll~~~y~H~ilPLl~d~~ed~~~QI~~g~~~~~~~FG~~P~  179 (528)
T 2b5d_X          126 EGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVNAQITVGVKNYEKHMKKHPR  179 (528)
T ss_dssp             HHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHHHHCCCEEEEcCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            568999999999999998764322221  2588999999998   889999986

>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3

Probab=89.08  E-value=0.77  Score=29.19  Aligned_cols=53  Identities=11%  Similarity=0.144  Sum_probs=41.1

Q ss_pred             HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375           9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP   62 (62)
Q Consensus         9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~   62 (62)
                      .+.+|+++++| .||-|=+|.-.+=..-....+..+|....   .+..|+.|+ -|||
T Consensus        46 ~~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P  102 (195)
T 2cc0_A           46 PSLVRAQVDAG-MWVANHSYTHPHMTQLGQAQMDSEISRTQQAIAGAGGGTPKLFRPP  102 (195)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHTTSCCCSEECCG
T ss_pred             HHHHHHHHHCC-CEEEcCCCCccccccCCHHHHHHHHHHHHHHHHHHhCCCCCEEECC
Confidence            46899999999 89999999866555556778888888877   555788776 4665

>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A

Probab=87.80  E-value=0.81  Score=29.84  Aligned_cols=51  Identities=16%  Similarity=0.322  Sum_probs=40.5

Q ss_pred             HHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375          11 IVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP   62 (62)
Q Consensus        11 ~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~   62 (62)
                      .+++++++| .||-+=+|.-.+=..-....+..+|....   .+..|++|+ -|||
T Consensus        50 ~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P  104 (216)
T 2c71_A           50 IIRRMVNSG-HEIGNHSWSYSGMANMSPDQIRKSIADTNAVIQKYAGTTPKFFRPP  104 (216)
T ss_dssp             HHHHHHHTT-CEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSCCCSEECCG
T ss_pred             HHHHHHHCC-CEEeeCCcCCcchhhCCHHHHHHHHHHHHHHHHHhhCCCCeEEECC
Confidence            899999999 89999999866555556778888888887   456788886 5766

>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3

Probab=84.77  E-value=1.5  Score=29.28  Aligned_cols=55  Identities=13%  Similarity=0.147  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375           7 TKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP   62 (62)
Q Consensus         7 ~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~   62 (62)
                      ...+.+|+++++| .||-|=+|.-.+=..-....+..+|....   .+..|++|+ -|||
T Consensus        86 ~~p~~lr~i~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P  144 (254)
T 2iw0_A           86 SNPDTIRRMRADG-HLVGSHTYAHPDLNTLSSADRISQMRQLEEATRRIDGFAPKYMRAP  144 (254)
T ss_dssp             THHHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCEESEECCG
T ss_pred             cCHHHHHHHHHCC-CEEEeeccCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCCEEECC
Confidence            3457899999999 89999999865555556778888888877   455788876 4665

>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34

Probab=83.12  E-value=0.75  Score=27.08  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=18.2

Q ss_pred             hHHHHHHHHHHHcCceeEEecc
Q psy4375           6 PTKRNIVKKLIAEGRLEMVTGG   27 (62)
Q Consensus         6 ~~~k~~vk~LV~~GqlEfv~GG   27 (62)
                      ++-+.-+.++|++|+||+++||
T Consensus        48 ~eL~~fL~~~v~e~kL~~~~gG   69 (74)
T 1ldd_A           48 QQLEGYLNTLADEGRLKYIANG   69 (74)
T ss_dssp             HHHHHHHHHHHHTTSEECCTTT
T ss_pred             HHHHHHHHHHHhCCeEEEeCCC
Confidence            5667778999999999987555

>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}

Probab=82.23  E-value=2.4  Score=28.02  Aligned_cols=53  Identities=13%  Similarity=0.221  Sum_probs=41.1

Q ss_pred             HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375           9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP   62 (62)
Q Consensus         9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~   62 (62)
                      .+.+++++++| .||-|=+|.-.+=..-....+..+|....   .+..|+.|+ -|||
T Consensus        74 p~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P  130 (230)
T 2y8u_A           74 PGLLQRMRDEG-HQVGAHTYDHVSLPSLGYDGIASQMTRLEEVIRPALGVAPAYMRPP  130 (230)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSSCBSEECCG
T ss_pred             HHHHHHHHHCC-CEEEecccCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCcEEECC
Confidence            46899999999 79999999876655556778888888777   455788776 3665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	62
g1o7d.3	330	c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-manno	6e-12
d3bvua3	381	c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fru	6e-11
d1k1xa3	310	c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-te	9e-04

>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 381

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.1 bits (127), Expect = 6e-11
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 1   MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
              +   K+  +K ++  G+LE VTGGWVM DEA SH   ++ QL E
Sbjct: 108 YHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTE 154

>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 310

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: 4-alpha-glucanotransferase, N-terminal domain
domain: 4-alpha-glucanotransferase, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 33.1 bits (75), Expect = 9e-04
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 1   MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL 45
           +E   P   ++++ LI  G+LE+V  G+     A       + Q+
Sbjct: 58  IEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQI 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	62
d3bvua3	381	Golgi alpha-mannosidase II {Fruit fly (Drosophila	99.77
g1o7d.3	330	Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax	99.6
d1k1xa3	310	4-alpha-glucanotransferase, N-terminal domain {Arc	99.08
d1ufaa2	412	Hypothetical protein TT1467, N-terminal domain {Th	96.15
d2b5dx2	404	Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23	95.74
d1ny1a_	235	Probable polysaccharide deacetylase PdaA {Bacillus	92.89
d1ldda_	74	Anaphase promoting complex (APC) {Baker's yeast (S	89.9
d2c71a1	204	Xylanase XynA C-terminal domain {Clostridium therm	88.41
d2cc0a1	192	Acetyl-xylan esterase {Streptomyces lividans [TaxI	86.56
d2j13a1	235	Putative polysaccharide deacetylase BA0424 {Bacill	85.43
d2c1ia1	196	Peptidoglycan GlcNAc deacetylase C-terminal domain	84.26

>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=8e-20  Score=132.54  Aligned_cols=57  Identities=37%  Similarity=0.542  Sum_probs=54.3

Q ss_pred             CcCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC
Q psy4375           2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus         2 d~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      ++++++.+++||+||++||||||+|||||+|||+++|+++|+||+.||   .++||+.|+
T Consensus       109 ~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~es~Irql~~G~~~l~~~fG~~p~  168 (381)
T d3bvua3         109 HDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPT  168 (381)
T ss_dssp             TTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHcCHHHHHHHHHHHHCCCEEEeCCeeecccccCCCHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            578999999999999999999999999999999999999999999999   678999885

>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: 4-alpha-glucanotransferase, N-terminal domain
domain: 4-alpha-glucanotransferase, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.08  E-value=3.2e-11  Score=81.75  Aligned_cols=56  Identities=18%  Similarity=0.182  Sum_probs=51.7

Q ss_pred             cCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh--hhhcccccC
Q psy4375           3 IVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET--FSTFSVQSS   58 (62)
Q Consensus         3 ~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh--~~~Fgv~p~   58 (62)
                      +.+++..+.+|+|+++||+||++|||++++.++.+..+++.|++.|+  .+.||++|+
T Consensus        60 ~~~p~~~~~~~~l~~~G~iE~~~~~~~h~~~~l~~~~~~~~qi~~~~~~~~~fG~~p~  117 (310)
T d1k1xa3          60 ENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYARKLGYDAK  117 (310)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEBCCTTCCCGGGSCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHCHHHHHHHHHHHHcCCcEEecCcccccchhhccHHHHHHHHHHHHHHHHHhhccCC
Confidence            44678889999999999999999999999999999999999998777  889999986

>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: AmyC N-terminal domain-like
domain: Hypothetical protein TT1467, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.15  E-value=0.0023  Score=45.15  Aligned_cols=50  Identities=14%  Similarity=0.066  Sum_probs=39.0

Q ss_pred             HHHHHHHHHcCceeEEecceeecccccc-cHHHHHHHHhhhh---hhhcccccC
Q psy4375           9 RNIVKKLIAEGRLEMVTGGWVMTDEATS-HIFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus         9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~-~y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      =..+|+|+++||+||+++++.=.==..- .-.++-.|+..|.   .+.||++|+
T Consensus       125 i~~~r~L~~~G~vEl~~~~y~H~ilpll~~~~~~~~Qi~~~~~~~~~~fG~~P~  178 (412)
T d1ufaa2         125 VAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWAQIKTGVSTYRRHFAKDPT  178 (412)
T ss_dssp             HHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHcCCeEEEeccchhhhhhcCCcHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            4678999999999999999865433332 2356778998888   899999986

>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: AmyC N-terminal domain-like
domain: Alpha-amylase AmyC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.74  E-value=0.0066  Score=42.44  Aligned_cols=49  Identities=16%  Similarity=0.007  Sum_probs=37.4

Q ss_pred             HHHHHHHHcCceeEEecceeeccccc--ccHHHHHHHHhhhh---hhhcccccC
Q psy4375          10 NIVKKLIAEGRLEMVTGGWVMTDEAT--SHIFAMVDQLIEET---FSTFSVQSS   58 (62)
Q Consensus        10 ~~vk~LV~~GqlEfv~GGWvm~DEA~--~~y~~~Idq~t~Gh---~~~Fgv~p~   58 (62)
                      ..+|+|+++||+||+++++.-.==..  ..-+++-.|+..|-   .+.||++|+
T Consensus       126 ~~~r~L~~~G~vEll~~~y~Hpilpll~~~~e~~~~Qi~~g~~~~~~~fG~~P~  179 (404)
T d2b5dx2         126 EGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVNAQITVGVKNYEKHMKKHPR  179 (404)
T ss_dssp             HHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHHHHcCCeeEEeccchhhhhhhccCChHHHHHHHHHHHHHHHHHhCCCCC
Confidence            56899999999999999886532221  12356778998888   799999886

>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Probable polysaccharide deacetylase PdaA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.89  E-value=0.1  Score=33.19  Aligned_cols=54  Identities=20%  Similarity=0.308  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccCC--CCC
Q psy4375           8 KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSSK--RPP   62 (62)
Q Consensus         8 ~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~~--~~~   62 (62)
                      ..+.+++++++|. ||-|.+|.-.+=..-....+.++|....   .+..|.+|..  |||
T Consensus        84 ~~~~~~~~~~~Gh-eIgnHt~~H~~~~~~s~~~~~~ei~~~~~~i~~~~G~~~~~~~RpP  142 (235)
T d1ny1a_          84 QPQLIKRMSDEGH-IIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNLYLRPP  142 (235)
T ss_dssp             CHHHHHHHHHTTC-EEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCCEECCG
T ss_pred             CHHHHHHHhhcCe-EEeccccccCCcccCCHHHHHHHHHHHHHHHHHHhhccccccccCC
Confidence            3567999999996 9999999765555556778888888877   6678888875  787

>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: SCF ubiquitin ligase complex WHB domain
domain: Anaphase promoting complex (APC)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.90  E-value=0.089  Score=29.92  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHHHcCceeEEecc
Q psy4375           6 PTKRNIVKKLIAEGRLEMVTGG   27 (62)
Q Consensus         6 ~~~k~~vk~LV~~GqlEfv~GG   27 (62)
                      ++-+.-+.++|++|+||+++||
T Consensus        48 ~eL~~FL~~~V~e~kL~~v~gG   69 (74)
T d1ldda_          48 QQLEGYLNTLADEGRLKYIANG   69 (74)
T ss_dssp             HHHHHHHHHHHHTTSEECCTTT
T ss_pred             HHHHHHHHHHHhcCceEEecCC
Confidence            4667778999999999999776

>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Xylanase XynA C-terminal domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.41  E-value=0.52  Score=28.92  Aligned_cols=56  Identities=14%  Similarity=0.308  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375           6 PTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP   62 (62)
Q Consensus         6 ~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~   62 (62)
                      +...+.+|+++++|. ||-|-||--.+=..-...++..+|....   .+..|..|+ -|||
T Consensus        41 ~~~~~~~k~i~~~Gh-eIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~~~~fR~P  100 (204)
T d2c71a1          41 DSTAAIIRRMVNSGH-EIGNHSWSYSGMANMSPDQIRKSIADTNAVIQKYAGTTPKFFRPP  100 (204)
T ss_dssp             HHHHHHHHHHHHTTC-EEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSCCCSEECCG
T ss_pred             ccCHHHHHHHhhcCe-EEccccccccchhhcCHHHHHHHHHHHHHHHHHHhCCCCCcccCC
Confidence            344567899999996 9999999877777777788888888877   666777764 3565

>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Acetyl-xylan esterase
species: Streptomyces lividans [TaxId: 1916]

Probab=86.56  E-value=0.68  Score=28.25  Aligned_cols=53  Identities=11%  Similarity=0.144  Sum_probs=41.5

Q ss_pred             HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375           9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP   62 (62)
Q Consensus         9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~   62 (62)
                      .+.+++++++| .||-|=+|.-.+=..-....+..+|....   .+.+|..|+ -|||
T Consensus        46 p~~~~~~~~~G-heIgnHs~~H~~~~~ls~~~~~~ei~~~~~~i~~~~g~~~~~fR~P  102 (192)
T d2cc0a1          46 PSLVRAQVDAG-MWVANHSYTHPHMTQLGQAQMDSEISRTQQAIAGAGGGTPKLFRPP  102 (192)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHTTSCCCSEECCG
T ss_pred             chhhHhHhhhh-hHHHhhhccCcchhhccHHHHHHHHHHHHHHHHHHhCCCcccccCc
Confidence            46799999999 69999999866555556778888888887   667888886 4666

>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Putative polysaccharide deacetylase BA0424
species: Bacillus anthracis [TaxId: 1392]

Probab=85.43  E-value=0.91  Score=28.42  Aligned_cols=53  Identities=19%  Similarity=0.301  Sum_probs=43.0

Q ss_pred             HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccCC--CCC
Q psy4375           9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSSK--RPP   62 (62)
Q Consensus         9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~~--~~~   62 (62)
                      .+.++++++.| .||-+-+|.=.|=..-...++.++|....   .+..|.+|.+  |||
T Consensus        87 p~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~~~rpp  144 (235)
T d2j13a1          87 KDLLLRMKDEG-HIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPP  144 (235)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHCCSCCCEECCG
T ss_pred             HHHHHHhhcCC-eEEeeeecCCCChhhCCHHHHHHHHHHHHHHHHHHhhccccccccCC
Confidence            46789999999 78999999776767777888999998888   5677888864  775

>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Peptidoglycan GlcNAc deacetylase C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.26  E-value=0.96  Score=27.48  Aligned_cols=54  Identities=19%  Similarity=0.320  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccCC-CCC
Q psy4375           8 KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSSK-RPP   62 (62)
Q Consensus         8 ~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~~-~~~   62 (62)
                      ..+.+++++++|. ||-|-||--.+-..-....+..+|....   .+..|.+|+- |||
T Consensus        42 ~~~~~~~~~~~Gh-eignHt~~H~~~~~~~~~~~~~ei~~~~~~i~~~~G~~~~~fr~P   99 (196)
T d2c1ia1          42 NEDLVKRIKSEGH-VVGNHSWSHPILSQLSLDEAKKQITDTEDVLTKVLGSSSKLMRPP   99 (196)
T ss_dssp             CHHHHHHHHHTTC-EEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCEECCG
T ss_pred             CcHHHHhhcCCCe-EEeccccCCcchhcCCHHHHHHHHHHHHHHHHHHhCCCCccccCc
Confidence            3467999999996 9999999766666566777888887777   5666777752 444