Psyllid ID: psy4409

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNISTMRVTSPSSQELTDDHSEDIEEYHVKHDDTSIQHEETCVQYEYDDDERTENK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHccccHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccccccccccEccccHHHHHccccccccccccccccccEccccHHHHHHcHccccccccccccccccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHcccccccccccccccccccccccccEEcccccccHcEEcccccccccccccccccccccEccccHHHHHHHHccccccccccHccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHccccccccccccccccccccccccccHccccEccccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mrrhlrkhsgekpytcyfcnfksaHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKrcsyvprpniqfnftclvcdyhsprsidmRRHIrrhtgekpfkcnfcfqcftQNVSLQTHIRIkhtrlfgqdkqestriyctfcrdplYNDLKILLQHTKNckgafrendsyryvcmvcpyhcrqnesMKRHLrkhtkdkpyecgfcslkfsrrdnlrrhlkdqhsydsfrsstkkpgkyGVLIVKgsnistmrvtspssqeltddhsedieeyhvkhddtsiqheetcvqyeydddertenk
Flexible Loop (DISEMBL)
mrrhlrkhsgekpyTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHtrlfgqdkqesTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHlrkhtkdkpyecGFCSLKFSRRDNLRRhlkdqhsydsfrsstkkpgkygVLIVkgsnistmrvtspssqeltddHSEDIEEYHvkhddtsiqheetcvqyeydddertenk
Low Complexity Region (SEG)
MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNISTMRVTSPSSQELTDDHSEDIEEYHVKHDDTSIQHEETCVQYEYDDDERTENK
Disordered region (IsUnstruct)
************PYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQN*************KPYECGFCSLKFS***************************YGVLIVK*********************************************************
Disordered Region (DISOPRED)
MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNISTMRVTSPSSQELTDD*******************EET***************
Disordered Region (DISEMBL)
*********GEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHL*************KKPGKYGVLIVKGSNISTM*************HSEDIEEYHVKHDDTSIQHEETCVQYE**********
Disordered Region (DISPRO)
MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNISTMRVTSPSSQELTDDHSEDIEEYHVKHDDTSIQHEETCVQYEYDDD******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNISTMRVTSPSSQELTDDHSEDIEEYHVKHDDTSIQHEETCVQYEYDDDERTENK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
Q99KE8	643	Zinc finger protein 64 OS	no	N/A	0.734	0.348	0.286	4e-20
Q9NTW7	645	Zinc finger protein 64 ho	yes	N/A	0.734	0.347	0.292	4e-20
Q61164	736	Transcriptional repressor	no	N/A	0.708	0.293	0.297	2e-19
Q9R1D1	737	Transcriptional repressor	no	N/A	0.708	0.293	0.297	2e-19
Q08705	728	Transcriptional repressor	no	N/A	0.708	0.296	0.297	2e-19
P49711	727	Transcriptional repressor	no	N/A	0.708	0.297	0.297	2e-19
Q8NI51	663	Transcriptional repressor	no	N/A	0.714	0.328	0.268	3e-19
P08048	801	Zinc finger Y-chromosomal	no	N/A	0.708	0.269	0.290	2e-18
Q6B4Z5	801	Zinc finger Y-chromosomal	no	N/A	0.708	0.269	0.286	2e-18
P10076	861	Zinc finger protein 26 OS	no	N/A	0.688	0.243	0.310	2e-18

>sp|Q99KE8|ZFP64_MOUSE Zinc finger protein 64 OS=Mus musculus GN=Zfp64 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 120/265 (45%), Gaps = 41/265 (15%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLK----IKHLEKIQCRYSILKLQSHEES 56
           + RHLR H+G+KP+ C FC+   +   ++  H++    +K  +   C Y+ +   S ++ 
Sbjct: 315 LDRHLRIHTGDKPHKCEFCDKCFSRKDNLTMHMRCHTSVKPHKCHLCDYAAVDSSSLKKH 374

Query: 57  LVQHA-------KRCSYVPRPNIQFN-----------FTCLVCDYHSPRSIDMRRHIRRH 98
           L  H+       + C Y  R + Q             F C +C      S D++RH+  H
Sbjct: 375 LRIHSDERPYKCQLCPYASRNSSQLTVHLRSHTGDTPFQCWLCSAKFKISSDLKRHMIVH 434

Query: 99  TGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILL 158
           +GEKPFKC FC    T   +L++HIRIKHT            ++C F       D   LL
Sbjct: 435 SGEKPFKCEFCDVRCTMKANLKSHIRIKHTFKC---------LHCAF----QGRDRADLL 481

Query: 159 QHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDN 218
           +H++  +    E       C  C Y C    +++ H R H  D+P++C FCS    R  +
Sbjct: 482 EHSRLHQADHPEK------CPECSYSCSNPAALRVHSRVHCTDRPFKCDFCSFDTKRPSS 535

Query: 219 LRRHLKDQHSYDSFRSSTKKPGKYG 243
           L +H+   H   +   +   PGK G
Sbjct: 536 LAKHIDKVHREGAKTENRAPPGKDG 560

May be involved in transcriptional regulation.
Mus musculus (taxid: 10090)

>sp|Q9NTW7|ZF64B_HUMAN Zinc finger protein 64 homolog, isoforms 3 and 4 OS=Homo sapiens GN=ZFP64 PE=2 SV=3

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 124/267 (46%), Gaps = 43/267 (16%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLK----IKHLEKIQCRYSILKLQSHEES 56
           + RHLR H+G+KP+ C FC+   +   ++  H++    +K  +   C Y+ +   S ++ 
Sbjct: 317 LDRHLRIHTGDKPHKCEFCDKCFSRKDNLTMHMRCHTSVKPHKCHLCDYAAVDSSSLKKH 376

Query: 57  LVQHA-------KRCSYVPRPNIQFN-----------FTCLVCDYHSPRSIDMRRHIRRH 98
           L  H+       + C Y  R + Q             F C +C      S D++RH+  H
Sbjct: 377 LRIHSDERPYKCQLCPYASRNSSQLTVHLRSHTGDTPFQCWLCSAKFKISSDLKRHMIVH 436

Query: 99  TGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILL 158
           +GEKPFKC FC    T   +L++HIRIKHT            ++C F       D   LL
Sbjct: 437 SGEKPFKCEFCDVRCTMKANLKSHIRIKHTFKC---------LHCAF----QGRDRADLL 483

Query: 159 QHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDN 218
           +H++  +    E       C  C Y C    +++ H R H KD+P++C FCS    R  +
Sbjct: 484 EHSRLHQADHPEK------CPECSYSCSSAAALRVHSRVHCKDRPFKCDFCSFDTKRPSS 537

Query: 219 LRRHLKDQHSYDSFRSSTKKP-GKYGV 244
           L +H+   H  D  ++  + P GK G+
Sbjct: 538 LAKHVDKVH-RDEAKTENRAPLGKEGL 563

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q61164|CTCF_MOUSE Transcriptional repressor CTCF OS=Mus musculus GN=Ctcf PE=1 SV=2

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 33/249 (13%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           +R HL  H+G +P+ C  C+        +  H + KH  +   + S+    S E S ++ 
Sbjct: 309 LRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKR 368

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
             R     RP     F C +C Y S  +  ++RH+R H+GEKP++C  C   FTQ+ +++
Sbjct: 369 HIRSHTGERP-----FQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMK 423

Query: 121 THIRIKHTRLFGQ--------------------DKQESTRIYCTFCR--DPLYNDLKILL 158
            HI  KHT    +                     KQ S       CR  D ++++   L+
Sbjct: 424 MHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALI 483

Query: 159 QHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDN 218
           QH K+ K      +  R+ C  C Y CRQ   M  H R HT +KPY C  C   F ++  
Sbjct: 484 QHQKSHK------NEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQL 537

Query: 219 LRRHLKDQH 227
           L  H K  H
Sbjct: 538 LDMHFKRYH 546

Chromatin binding factor that binds to DNA sequence specific sites. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Acts as transcriptional repressor binding to promoters of vertebrate MYC gene and BAG1 gene. Also binds to the PLK and PIM1 promoters. Acts as a transcriptional activator of APP. Regulates APOA1/C3/A4/A5 gene cluster and controls MHC class II gene expression. Plays an essential role in oocyte and preimplantation embryo development by activating or repressing transcription. Seems to act as tumor suppressor. Plays a critical role in the epigenetic regulation. Participates in the allele-specific gene expression at the imprinted IGF2/H19 gene locus. On the maternal allele, binding within the H19 imprinting control region (ICR) mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to IGF2. Plays a critical role in gene silencing over considerable distances in the genome. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation and maintaining methylation-free zones. Inversely, binding to target sites is prevented by CpG methylation. Plays a important role in chromatin remodeling. Can dimerize when it is bound to different DNA sequences, mediating long-range chromatin looping (By similarity). Mediates interchromosomal association between IGF2/H19 and WSB1/NF1 and may direct distant DNA segments to a common transcription factory. Causes local loss of histone acetylation and gain of histone methylation in the beta-globin locus, without affecting transcription. When bound to chromatin, it provides an anchor point for nucleosomes positioning. Seems to be essential for homologous X-chromosome pairing. May participate with Tsix in establishing a regulatable epigenetic switch for X chromosome inactivation. May play a role in preventing the propagation of stable methylation at the escape genes from X-inactivation. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites. Regulates asynchronous replication of IGF2/H19.

Mus musculus (taxid: 10090)

>sp|Q9R1D1|CTCF_RAT Transcriptional repressor CTCF OS=Rattus norvegicus GN=Ctcf PE=2 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 33/249 (13%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           +R HL  H+G +P+ C  C+        +  H + KH  +   + S+    S E S ++ 
Sbjct: 309 LRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKR 368

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
             R     RP     F C +C Y S  +  ++RH+R H+GEKP++C  C   FTQ+ +++
Sbjct: 369 HIRSHTGERP-----FQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMK 423

Query: 121 THIRIKHTRLFGQ--------------------DKQESTRIYCTFCR--DPLYNDLKILL 158
            HI  KHT    +                     KQ S       CR  D ++++   L+
Sbjct: 424 MHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALI 483

Query: 159 QHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDN 218
           QH K+ K      +  R+ C  C Y CRQ   M  H R HT +KPY C  C   F ++  
Sbjct: 484 QHQKSHK------NEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQL 537

Query: 219 LRRHLKDQH 227
           L  H K  H
Sbjct: 538 LDMHFKRYH 546

Chromatin binding factor that binds to DNA sequence specific sites. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Acts as transcriptional repressor binding to promoters of vertebrate MYC gene and BAG1 gene. Also binds to the PLK and PIM1 promoters. Acts as a transcriptional activator of APP. Regulates APOA1/C3/A4/A5 gene cluster and controls MHC class II gene expression. Plays an essential role in oocyte and preimplantation embryo development by activating or repressing transcription. Seems to act as tumor suppressor. Plays a critical role in the epigenetic regulation. Participates in the allele-specific gene expression at the imprinted IGF2/H19 gene locus. On the maternal allele, binding within the H19 imprinting control region (ICR) mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to IGF2. Plays a critical role in gene silencing over considerable distances in the genome. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation and maintaining methylation-free zones. Inversely, binding to target sites is prevented by CpG methylation. Plays a important role in chromatin remodeling. Can dimerize when it is bound to different DNA sequences, mediating long-range chromatin looping. Mediates interchromosomal association between IGF2/H19 and WSB1/NF1 and may direct distant DNA segments to a common transcription factory. Causes local loss of histone acetylation and gain of histone methylation in the beta-globin locus, without affecting transcription. When bound to chromatin, it provides an anchor point for nucleosomes positioning. Seems to be essential for homologous X-chromosome pairing. May participate with Tsix in establishing a regulatable epigenetic switch for X chromosome inactivation. May play a role in preventing the propagation of stable methylation at the escape genes from X-inactivation. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites. Regulates asynchronous replication of IGF2/H19.

Rattus norvegicus (taxid: 10116)

>sp|Q08705|CTCF_CHICK Transcriptional repressor CTCF OS=Gallus gallus GN=CTCF PE=1 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 33/249 (13%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           +R HL  H+G +P+ C  C+        +  H + KH  +   + S+    S E S ++ 
Sbjct: 309 LRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKR 368

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
             R     RP     F C +C Y S  +  ++RH+R H+GEKP++C  C   FTQ+ +++
Sbjct: 369 HIRSHTGERP-----FQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMK 423

Query: 121 THIRIKHTRLFGQ--------------------DKQESTRIYCTFCR--DPLYNDLKILL 158
            HI  KHT    +                     KQ S       CR  D ++++   L+
Sbjct: 424 MHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALI 483

Query: 159 QHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDN 218
           QH K+ K      +  R+ C  C Y CRQ   M  H R HT +KPY C  C   F ++  
Sbjct: 484 QHQKSHK------NEKRFKCDQCDYACRQERHMVMHKRTHTGEKPYACSHCDKTFRQKQL 537

Query: 219 LRRHLKDQH 227
           L  H K  H
Sbjct: 538 LDMHFKRYH 546

Acts as both a transcriptional activator and repressor of the MYC gene.

Gallus gallus (taxid: 9031)

>sp|P49711|CTCF_HUMAN Transcriptional repressor CTCF OS=Homo sapiens GN=CTCF PE=1 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 33/249 (13%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           +R HL  H+G +P+ C  C+        +  H + KH  +   + S+    S E S ++ 
Sbjct: 309 LRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKR 368

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
             R     RP     F C +C Y S  +  ++RH+R H+GEKP++C  C   FTQ+ +++
Sbjct: 369 HIRSHTGERP-----FQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMK 423

Query: 121 THIRIKHTRLFGQ--------------------DKQESTRIYCTFCR--DPLYNDLKILL 158
            HI  KHT    +                     KQ S       CR  D ++++   L+
Sbjct: 424 MHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALI 483

Query: 159 QHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDN 218
           QH K+ K      +  R+ C  C Y CRQ   M  H R HT +KPY C  C   F ++  
Sbjct: 484 QHQKSHK------NEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQL 537

Query: 219 LRRHLKDQH 227
           L  H K  H
Sbjct: 538 LDMHFKRYH 546

Chromatin binding factor that binds to DNA sequence specific sites. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Acts as transcriptional repressor binding to promoters of vertebrate MYC gene and BAG1 gene. Also binds to the PLK and PIM1 promoters. Acts as a transcriptional activator of APP. Regulates APOA1/C3/A4/A5 gene cluster and controls MHC class II gene expression. Plays an essential role in oocyte and preimplantation embryo development by activating or repressing transcription. Seems to act as tumor suppressor. Plays a critical role in the epigenetic regulation. Participates in the allele-specific gene expression at the imprinted IGF2/H19 gene locus. On the maternal allele, binding within the H19 imprinting control region (ICR) mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to IGF2. Plays a critical role in gene silencing over considerable distances in the genome. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation and maintaining methylation-free zones. Inversely, binding to target sites is prevented by CpG methylation. Plays a important role in chromatin remodeling. Can dimerize when it is bound to different DNA sequences, mediating long-range chromatin looping. Mediates interchromosomal association between IGF2/H19 and WSB1/NF1 and may direct distant DNA segments to a common transcription factory. Causes local loss of histone acetylation and gain of histone methylation in the beta-globin locus, without affecting transcription. When bound to chromatin, it provides an anchor point for nucleosomes positioning. Seems to be essential for homologous X-chromosome pairing. May participate with Tsix in establishing a regulatable epigenetic switch for X chromosome inactivation. May play a role in preventing the propagation of stable methylation at the escape genes from X- inactivation. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites. Regulates asynchronous replication of IGF2/H19.

Homo sapiens (taxid: 9606)

>sp|Q8NI51|CTCFL_HUMAN Transcriptional repressor CTCFL OS=Homo sapiens GN=CTCFL PE=1 SV=2

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 111/253 (43%), Gaps = 35/253 (13%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           +R H+  H+G +PY C  CN        +  H + KH  +   + S+ K  S E S ++ 
Sbjct: 300 LRNHVNTHTGTRPYKCNDCNMAFVTSGELVRHRRYKHTHEKPFKCSMCKYASVEASKLKR 359

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
             R     RP     F C  C Y S  +  ++RH+R H+GEKP++C+ C   FTQ+ +++
Sbjct: 360 HVRSHTGERP-----FQCCQCSYASRDTYKLKRHMRTHSGEKPYECHICHTRFTQSGTMK 414

Query: 121 THIRIKHTR-----------------------LFGQDKQESTRIYCTFCRDPLYNDLKIL 157
            HI  KH                         +       +  + C +C   ++++   L
Sbjct: 415 IHILQKHGENVPKYQCPHCATIIARKSDLRVHMRNLHAYSAAELKCRYC-SAVFHERYAL 473

Query: 158 LQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRD 217
           +QH K  K      +  R+ C  C Y C+Q   M  H+R HT +KP+ C  C+  F ++ 
Sbjct: 474 IQHQKTHK------NEKRFKCKHCSYACKQERHMTAHIRTHTGEKPFTCLSCNKCFRQKQ 527

Query: 218 NLRRHLKDQHSYD 230
            L  H +  H  +
Sbjct: 528 LLNAHFRKYHDAN 540

Testis-specific DNA binding protein responsible for insulator function, nuclear architecture and transcriptional control, which probably acts by recruiting epigenetic chromatin modifiers. Plays a key role in gene imprinting in male germline, by participating in the establishment of differential methylation at the IGF2/H19 imprinted control region (ICR). Directly binds the unmethylated H19 ICR and recruits the PRMT7 methyltransferase, leading to methylate histone H4 'Arg-3' to form H4R3sme2. This probably leads to recruit de novo DNA methyltransferases at these sites (By similarity). Seems to act as tumor suppressor. In association with DNMT1 and DNMT3B, involved in activation of BAG1 gene expression by binding to its promoter. Required for dimethylation of H3 lysine 4 (H3K4me2) of MYC and BRCA1 promoters.

Homo sapiens (taxid: 9606)

>sp|P08048|ZFY_HUMAN Zinc finger Y-chromosomal protein OS=Homo sapiens GN=ZFY PE=1 SV=3

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 110/248 (44%), Gaps = 32/248 (12%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           +R+H+R H+GEKPY C +C ++SA  S++  H+K KH +++  +  I  L   +   VQ 
Sbjct: 559 LRKHMRIHTGEKPYQCQYCEYRSADSSNLKTHIKTKHSKEMPFKCDICLLTFSDTKEVQQ 618

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRH-IRRHTGEKPFKCNFCFQCFTQNVSL 119
                   +        CL CD+ S  S D++RH I  HT + P KC  C + F +   L
Sbjct: 619 HTLVHQESK-----THQCLHCDHKSSNSSDLKRHVISVHTKDYPHKCEMCEKGFHRPSEL 673

Query: 120 QTHIRIKHTRLFGQDKQESTRIYCTF-CRDPLYNDLKILLQHTKN-------CKGAFREN 171
           + H+ +   +   Q +      +C F   DP      IL  HTK+       C+  FR+ 
Sbjct: 674 KKHVAVHKGKKMHQCR------HCDFKIADPFVLSRHILSVHTKDLPFRCKRCRKGFRQQ 727

Query: 172 DSYR-----------YVCMVCPYHCRQNESMKRH-LRKHTKDKPYECGFCSLKFSRRDNL 219
           +  +           Y C  C Y        KRH +  HTKD P+ C +C   F R    
Sbjct: 728 NELKKHMKTHSGRKVYQCEYCEYSTTDASGFKRHVISIHTKDYPHRCEYCKKGFRRPSEK 787

Query: 220 RRHLKDQH 227
            +H+   H
Sbjct: 788 NQHIMRHH 795

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Homo sapiens (taxid: 9606)

>sp|Q6B4Z5|ZFY_PANTR Zinc finger Y-chromosomal protein OS=Pan troglodytes GN=ZFY PE=2 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 32/248 (12%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           +++H+R H+GEKPY C +C ++SA  S++  H+K KH +++  +  I  L   +   VQ 
Sbjct: 559 LKKHMRIHTGEKPYQCQYCEYRSADSSNLKTHIKTKHSKEMPLKCDICLLTFSDTKEVQQ 618

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRH-IRRHTGEKPFKCNFCFQCFTQNVSL 119
                   +        CL CD+ S  S D++RH I  HT + P KC  C + F +   L
Sbjct: 619 HTLVHQESK-----THQCLHCDHKSSNSSDLKRHVISVHTKDYPHKCEMCEKGFHRPSEL 673

Query: 120 QTHIRIKHTRLFGQDKQESTRIYCTF-CRDPLYNDLKILLQHTKN-------CKGAFREN 171
           + H+ +   +   Q +      +C F   DP      IL  HTK+       C+  FR+ 
Sbjct: 674 KKHVAVHKGKKMHQCR------HCDFKIADPFVLSRHILSVHTKDLPFRCKRCRKGFRQQ 727

Query: 172 DSYR-----------YVCMVCPYHCRQNESMKRH-LRKHTKDKPYECGFCSLKFSRRDNL 219
           +  +           Y C  C Y        KRH +  HTKD P+ C +C   F R    
Sbjct: 728 NELKKHMKTHSGRKVYQCEYCEYSTTDASGFKRHVISIHTKDYPHRCEYCKKGFRRPSEK 787

Query: 220 RRHLKDQH 227
            +H+   H
Sbjct: 788 NQHIMRHH 795

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Pan troglodytes (taxid: 9598)

>sp|P10076|ZFP26_MOUSE Zinc finger protein 26 OS=Mus musculus GN=Zfp26 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 105/232 (45%), Gaps = 22/232 (9%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           + +H+  H+GEKPY C  C    +  S +  H++I   EK    Y   K  +H  SLV H
Sbjct: 485 LTKHVLIHNGEKPYECKECGKAFSTSSGLVEHIRIHTGEKPFECYQCGKALAHSSSLVGH 544

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
             R     +P     F C  CD    RS  +R H+R HTGEKP++C  C + F +   L 
Sbjct: 545 L-RTHTGEKP-----FECNQCDKTFTRSSYLRIHMRTHTGEKPYECKECGKTFPERSCLT 598

Query: 121 THIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMV 180
            HIR  HT     + +E  + + +F +         L  H K        +    + C V
Sbjct: 599 KHIRT-HTGERPYECKECGKGFISFAQ---------LTVHIKT------HSSERPFQCKV 642

Query: 181 CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF 232
           C    R + S++ H R HT  KPY+C +C   F+ R  L  HL++     S+
Sbjct: 643 CTKSFRNSSSLETHFRIHTGVKPYKCSYCGKAFTARSGLTIHLRNHTGEKSY 694

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
260823046	517	hypothetical protein BRAFLDRAFT_71717 [B	0.675	0.398	0.305	7e-22
260823018	507	hypothetical protein BRAFLDRAFT_71732 [B	0.675	0.406	0.297	5e-21
440902858	562	Zinc finger protein 64-like protein, iso	0.790	0.428	0.289	7e-21
348555782	681	PREDICTED: zinc finger protein 64 homolo	0.672	0.301	0.301	1e-20
348555784	627	PREDICTED: zinc finger protein 64 homolo	0.672	0.326	0.301	1e-20
260823024	596	hypothetical protein BRAFLDRAFT_71729 [B	0.603	0.308	0.296	2e-20
260823004	909	hypothetical protein BRAFLDRAFT_71739 [B	0.629	0.211	0.310	2e-20
260823124	954	hypothetical protein BRAFLDRAFT_119785 [	0.645	0.206	0.321	3e-20
72028083	939	PREDICTED: uncharacterized protein LOC59	0.744	0.241	0.290	4e-20
441638113	454	PREDICTED: transcriptional repressor CTC	0.783	0.526	0.28	4e-20

>gi|260823046|ref|XP_002603994.1| hypothetical protein BRAFLDRAFT_71717 [Branchiostoma floridae] gi|229289319|gb|EEN60005.1| hypothetical protein BRAFLDRAFT_71717 [Branchiostoma floridae]

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 112/239 (46%), Gaps = 33/239 (13%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI----QCRYSILKLQSHEES 56
           + RH++ HSGEKPY C  C +++A+  +++ H++    +K     QC YS  +  S ++ 
Sbjct: 256 LSRHMKIHSGEKPYMCGECGYRAAYKYNLSQHMRTHTGQKPYKCDQCNYSAAQKSSLDQH 315

Query: 57  LVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN 116
           L++H     Y+          C  C + +    D+ RH+R HTGEKP+KC+ C     Q 
Sbjct: 316 LMKHTGEKPYM----------CGECGHRTTTKSDLSRHMRIHTGEKPYKCDQCDYSAAQK 365

Query: 117 VSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLK--ILLQHTKNCKGAFRENDSY 174
           V+   HI  KHT         S + Y   C +  Y       L +H +   G        
Sbjct: 366 VNFDAHIAAKHT---------SEKPY--MCGECGYRTAGRSTLSRHMRTHTG------ER 408

Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFR 233
           RY C  C Y   Q   + +HL  HT +KPY CG C  + +R+ NL RH++       F+
Sbjct: 409 RYKCDQCDYSAMQKGDLDKHLATHTGEKPYMCGECGYRTARKSNLSRHMRTHSGKKPFK 467

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823018|ref|XP_002603980.1| hypothetical protein BRAFLDRAFT_71732 [Branchiostoma floridae] gi|229289305|gb|EEN59991.1| hypothetical protein BRAFLDRAFT_71732 [Branchiostoma floridae]

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 33/239 (13%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI----QCRYSILKLQSHEES 56
           + RH++ HSGEKPY C  C +++A+  +++ H++    +K     QC YS  +  + ++ 
Sbjct: 267 LSRHMKIHSGEKPYMCGECGYRAAYKYNLSKHMRTHTGQKPYKCDQCNYSAAQKSTLDQH 326

Query: 57  LVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN 116
           L++H     Y+          C  C + +    D+ RH+R HTGEKP+KC+ C     Q 
Sbjct: 327 LMKHTGEKPYM----------CGECGHRTTTKSDLSRHMRIHTGEKPYKCDQCDYSAAQK 376

Query: 117 VSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLY--NDLKILLQHTKNCKGAFRENDSY 174
           V+   HI  KHT         S + +   C +  Y   D   L +H +   G        
Sbjct: 377 VNFDAHIAAKHT---------SEKPF--MCGECGYRTADRSTLSRHMRTHTG------ER 419

Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFR 233
           RY C  C Y   Q   + +HL  HT +KP+ CG C  + +R+ NL RH++       F+
Sbjct: 420 RYKCDQCDYSAVQKGDLDKHLATHTGEKPFMCGECGHRTARKSNLSRHMRTHSGEKPFK 478

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440902858|gb|ELR53593.1| Zinc finger protein 64-like protein, isoforms 1 and 2, partial [Bos grunniens mutus]

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 123/266 (46%), Gaps = 25/266 (9%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK-IQCRYSILKLQSHEESLVQ 59
           ++ H R H+G KPY C  C++ +A  SS+N HL+I   E+  +C+      ++  +  V 
Sbjct: 175 LKTHTRCHTGVKPYKCKSCDYAAADSSSLNKHLRIHSDERPFKCQLCPYASRNSSQLTV- 233

Query: 60  HAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSL 119
                 ++  P     F C +C      S D++RH+R H+GEKPFKC FC    T   +L
Sbjct: 234 ------HLRSPPGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCSVRCTMKGNL 287

Query: 120 QTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM 179
           ++HIRIKH+              C  C D L +    L +H++  +    E       C 
Sbjct: 288 KSHIRIKHS---------GNSFKCPHC-DFLGDSKATLRKHSRLHQAEHPEK------CP 331

Query: 180 VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKP 239
            C Y C    +++ H R H  D+P++C  CS    +  NL +H+K  H  D+ +S   + 
Sbjct: 332 DCSYSCPSKAALRVHSRVHCPDRPFKCSHCSFDTKQPSNLAKHVKKFHG-DALKSEAAER 390

Query: 240 GKYGVLIVKGSNISTMRVTSPSSQEL 265
              G       N     + +P+ +EL
Sbjct: 391 RDVGRAAAPAVNSVQPPLVAPNPEEL 416

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348555782|ref|XP_003463702.1| PREDICTED: zinc finger protein 64 homolog, isoforms 1 and 2-like isoform 1 [Cavia porcellus]

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 24/229 (10%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK-IQCRYSILKLQSHEESLVQ 59
           ++ H+R H+G+KPY C  C++ +A  SS+N HL+I   E+  +C+      ++  +  V 
Sbjct: 190 LKTHMRCHTGQKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 249

Query: 60  HAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSL 119
                   P       F C +C      S D++RH+R H+GEKPFKC FC    T   +L
Sbjct: 250 LRSHTGDAP-------FQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNL 302

Query: 120 QTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM 179
           ++HIRIKH+              C  C D L +    L +H++  +    E       C 
Sbjct: 303 KSHIRIKHS---------GNNFKCPHC-DFLGDSKATLRKHSRVHQSEHPEK------CS 346

Query: 180 VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
            C Y C    +++ H R H  ++P++C +CS    +  NL +H+K  H+
Sbjct: 347 ECSYSCASKAALRIHARIHGPERPFKCSYCSFDTKQPSNLSKHMKKFHA 395

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348555784|ref|XP_003463703.1| PREDICTED: zinc finger protein 64 homolog, isoforms 1 and 2-like isoform 2 [Cavia porcellus]

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 24/229 (10%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK-IQCRYSILKLQSHEESLVQ 59
           ++ H+R H+G+KPY C  C++ +A  SS+N HL+I   E+  +C+      ++  +  V 
Sbjct: 136 LKTHMRCHTGQKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 195

Query: 60  HAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSL 119
                   P       F C +C      S D++RH+R H+GEKPFKC FC    T   +L
Sbjct: 196 LRSHTGDAP-------FQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNL 248

Query: 120 QTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM 179
           ++HIRIKH+              C  C D L +    L +H++  +    E       C 
Sbjct: 249 KSHIRIKHS---------GNNFKCPHC-DFLGDSKATLRKHSRVHQSEHPEK------CS 292

Query: 180 VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
            C Y C    +++ H R H  ++P++C +CS    +  NL +H+K  H+
Sbjct: 293 ECSYSCASKAALRIHARIHGPERPFKCSYCSFDTKQPSNLSKHMKKFHA 341

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823024|ref|XP_002603983.1| hypothetical protein BRAFLDRAFT_71729 [Branchiostoma floridae] gi|229289308|gb|EEN59994.1| hypothetical protein BRAFLDRAFT_71729 [Branchiostoma floridae]

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 99/229 (43%), Gaps = 45/229 (19%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           M +H+R H+GEKPY C+ C++ +A   S+  H+  KH  +                    
Sbjct: 187 MSQHMRTHTGEKPYKCHHCDYAAAQQGSLAYHIATKHTGE-------------------- 226

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
                   +P     + C  C Y + +  D+ RH+R HTGEKP+KC+ C     Q  +L 
Sbjct: 227 --------KP-----YMCEECGYRATKMFDLSRHMRTHTGEKPYKCDQCDYSAAQKGNLD 273

Query: 121 THIRIKHTRLFGQDKQESTR-----IYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYR 175
            HI  KHTR     K  +         C  C    Y+   IL  H +   G         
Sbjct: 274 QHIAAKHTRKDDLKKHVANHTGNKPFMCVECGYRAYS-RSILSAHMRTHSG------EKP 326

Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           Y C  C Y      ++ +H+RKHT +KPY CG C  + + R  L RH++
Sbjct: 327 YKCDQCDYSAADKSTLVKHIRKHTGEKPYMCGECGFRTAYRSTLSRHMR 375

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823004|ref|XP_002603973.1| hypothetical protein BRAFLDRAFT_71739 [Branchiostoma floridae] gi|229289298|gb|EEN59984.1| hypothetical protein BRAFLDRAFT_71739 [Branchiostoma floridae]

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 37/229 (16%)

Query: 3   RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI----QCRYSILKLQSHEESLV 58
           +HL KH+GEKPY C  C F++AH   ++ H++    E+     QC Y+     + +  L 
Sbjct: 308 QHLVKHTGEKPYMCGECGFRTAHQCYLSRHMRTHTGERPYKCGQCDYTAAGKSALDRHLA 367

Query: 59  QHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVS 118
           +H+    Y+          C  C Y +    ++  H+R HTGEKP+KC+ C     Q V+
Sbjct: 368 KHSGAKPYM----------CGECGYRTANKANLSAHMRTHTGEKPYKCDQCDYSAAQKVT 417

Query: 119 LQTHIRIKHTRLFGQDKQESTRIY-CTFC--RDPLYNDL-KILLQHTKNCKGAFRENDSY 174
           L  HI  KHT           + Y C  C  R    + L + L +HT +           
Sbjct: 418 LDDHIAAKHT---------GEKPYMCGECGYRTATKSTLGRHLTKHTGD----------K 458

Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHL 223
            Y+C  C Y   +   + RH+R HT DKPY+C  C    +R+  L+ HL
Sbjct: 459 PYMCGECGYRATRKSQLSRHMRTHTGDKPYKCDQCDYSAARKSALKLHL 507

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823124|ref|XP_002604033.1| hypothetical protein BRAFLDRAFT_119785 [Branchiostoma floridae] gi|229289358|gb|EEN60044.1| hypothetical protein BRAFLDRAFT_119785 [Branchiostoma floridae]

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 33/230 (14%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI----QCRYSILKLQSHEES 56
           + +HLRKH+GEKPY C  C F++ H  S++ H++    EK     QC YS  +    + +
Sbjct: 719 LDKHLRKHTGEKPYMCGECGFRTTHKESLSRHMRTHTGEKPYKCDQCDYSAAR----KST 774

Query: 57  LVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN 116
           L  H      V + + +  + C  C Y +    D+ +H+R HTGEKP+KC+ C     Q 
Sbjct: 775 LDNHT-----VAKHSGEKPYICGECGYRAVHKSDLSKHMRTHTGEKPYKCDQCDYSAAQK 829

Query: 117 VSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKI--LLQHTKNCKGAFRENDSY 174
            +L  H+R KHT           + Y   C +  Y   +   L  H +   G        
Sbjct: 830 STLDQHLR-KHT---------GDKPY--MCGECGYRTAQKSNLSTHMRTHTG------KK 871

Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
            Y C  C Y   +  +   HL KHT +KPY CG C  + ++R NL RH+K
Sbjct: 872 SYKCNQCDYAAARKSTWDIHLAKHTDEKPYMCGECGYRAAQRSNLSRHMK 921

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|72028083|ref|XP_797592.1| PREDICTED: uncharacterized protein LOC593001 [Strongylocentrotus purpuratus]

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 112/258 (43%), Gaps = 31/258 (12%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           +R H   HSG KPY C  C         +  H+K  H  +   +  +    S E S ++ 
Sbjct: 487 LRNHENTHSGTKPYKCELCPKAFGTSGELGRHMKYMHTHEKPHKCPLCDYLSVEASKIKR 546

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
             R     +P     + C +C+Y S  +  ++RH+R HTGE+PF C+ C Q F+Q  SL+
Sbjct: 547 HMRSHTGEKP-----YKCTLCEYASTDNYKLKRHMRVHTGERPFNCSQCDQSFSQKSSLK 601

Query: 121 THIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQ--HT-------KNCKGAFREN 171
            H   KH  +  +   +      TF R   Y D+K  ++  HT       K C+ AF + 
Sbjct: 602 EH-EWKH--VGNRPSHKCDHCDTTFGR---YADMKTHVRKMHTAGEPMICKICENAFTDR 655

Query: 172 DSYR-----------YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLR 220
            +Y            Y C  C Y   Q   +  H+R HT ++PYEC  C   F  +  L 
Sbjct: 656 FTYMQHVRGHRGEKIYKCGECGYSAPQKRHLVIHMRVHTGERPYECEECHETFKHKQTLI 715

Query: 221 RHLKDQHSYDSFRSSTKK 238
            H + +H+       TKK
Sbjct: 716 NHQRSKHNLIQEADGTKK 733

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|441638113|ref|XP_004090109.1| PREDICTED: transcriptional repressor CTCFL [Nomascus leucogenys]

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 36/275 (13%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           +R H+  H+G +PY C  CN        +  H + KH  +   + S+ K  S E S ++ 
Sbjct: 95  LRNHVNIHTGNRPYKCNDCNMAFVTSGELVRHRRYKHTHEKPFKCSMCKYASVEASKLKR 154

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
             R     RP     F C  C Y S  +  ++RH+R H+GEKP++C+ C   FTQN +++
Sbjct: 155 HVRSHTGERP-----FQCCQCSYASRDTYKLKRHMRTHSGEKPYECHICHARFTQNGTMK 209

Query: 121 THIRIKHTR-----------------------LFGQDKQESTRIYCTFCRDPLYNDLKIL 157
           THI  KH+                        +       +T + C +C   ++++   L
Sbjct: 210 THILQKHSENVPKYQCPHCAAIIARKSDLRVHMRNLHAYSATELKCRYC-SAVFHERYAL 268

Query: 158 LQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRD 217
           +QH K  K      +  R+ C  C Y C+Q   M  H+R HT +KP+ C  C+  F ++ 
Sbjct: 269 MQHQKTHK------NEKRFKCEHCSYACKQERHMTAHIRTHTGEKPFTCLSCNKCFRQKQ 322

Query: 218 NLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNI 252
            L  H +  H  + F  +  K  K G    + SN+
Sbjct: 323 LLNAHFRKYHDAN-FIPTVYKCSKCGKGFSRWSNV 356

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
UNIPROTKB|D4A4M7	474	Zfp64 "Protein Zfp64" [Rattus	0.849	0.546	0.290	7.4e-28
RGD|1307948	678	Zfp64 "zinc finger protein 64"	0.849	0.382	0.290	3.8e-27
UNIPROTKB|Q5JWM1	679	ZFP64 "Zinc finger protein 64	0.668	0.300	0.320	2.8e-26
UNIPROTKB|Q9NPA5	681	ZFP64 "Zinc finger protein 64	0.668	0.299	0.320	2.8e-26
UNIPROTKB|E2R5D8	682	ZFP64 "Uncharacterized protein	0.908	0.406	0.272	2.8e-26
UNIPROTKB|A5GFU9	680	ZFP64 "Zinc finger protein 64	0.668	0.3	0.320	5.9e-26
UNIPROTKB|F1NMT1	559	ZFP64 "Uncharacterized protein	0.665	0.363	0.326	7e-26
UNIPROTKB|F1NMT2	689	ZFP64 "Uncharacterized protein	0.665	0.294	0.326	1.3e-25
ZFIN|ZDB-GENE-110913-123	429	si:dkey-14o6.4 "si:dkey-14o6.4	0.642	0.456	0.353	3.3e-25
ZFIN|ZDB-GENE-110914-70	392	si:ch211-234c11.2 "si:ch211-23	0.642	0.5	0.353	3.6e-25

UNIPROTKB|D4A4M7 Zfp64 "Protein Zfp64" [Rattus norvegicus (taxid:10116)]

 Score = 313 (115.2 bits), Expect = 7.4e-28, P = 7.4e-28
 Identities = 86/296 (29%), Positives = 137/296 (46%)

Query:     1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
             ++ H+R H+G KPY C  C++ +A  SS+N HL+I H ++   +  I    S   S +  
Sbjct:   190 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQICPYASRNSSQLTV 248

Query:    61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFC-FQCFTQNVSL 119
               R      P     F C +C      S D++RH+R H+GEKPFKC+FC  +C T   +L
Sbjct:   249 HLRSHTGDAP-----FQCWLCSAKFKISSDLKRHMRVHSGEKPFKCDFCNVRC-TMKGNL 302

Query:   120 QTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM 179
             ++HIRIKH+              C  C D L +    L +H++  +    E       C 
Sbjct:   303 KSHIRIKHS---------GNNFKCPHC-DFLGDSKSTLRKHSRLHQSEHPEK------CA 346

Query:   180 VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS----------Y 229
              C Y C    +++ H R H  ++P++C +CS    +  NL +H+K  H+           
Sbjct:   347 ECSYSCSSKAALRVHERIHCTERPFKCSYCSFDTKQPSNLSKHMKKFHADTLKNEAPERK 406

Query:   230 DSFRSSTKKPGKYGVLIVKGSNISTMRVTSPSSQELTDDHSEDIEEYHVKHDDTSI 285
             DS R S+++  K   L  K +    +   S   ++    H     EYH K+ D ++
Sbjct:   407 DSGRQSSRQVAK---LDAKKTFHCDICDASFMREDSLRSHKRQHSEYHSKNSDVTV 459

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1307948 Zfp64 "zinc finger protein 64" [Rattus norvegicus (taxid:10116)]

 Score = 313 (115.2 bits), Expect = 3.8e-27, P = 3.8e-27
 Identities = 86/296 (29%), Positives = 137/296 (46%)

Query:     1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
             ++ H+R H+G KPY C  C++ +A  SS+N HL+I H ++   +  I    S   S +  
Sbjct:   190 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQICPYASRNSSQLTV 248

Query:    61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFC-FQCFTQNVSL 119
               R      P     F C +C      S D++RH+R H+GEKPFKC+FC  +C T   +L
Sbjct:   249 HLRSHTGDAP-----FQCWLCSAKFKISSDLKRHMRVHSGEKPFKCDFCNVRC-TMKGNL 302

Query:   120 QTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM 179
             ++HIRIKH+              C  C D L +    L +H++  +    E       C 
Sbjct:   303 KSHIRIKHS---------GNNFKCPHC-DFLGDSKSTLRKHSRLHQSEHPEK------CA 346

Query:   180 VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS----------Y 229
              C Y C    +++ H R H  ++P++C +CS    +  NL +H+K  H+           
Sbjct:   347 ECSYSCSSKAALRVHERIHCTERPFKCSYCSFDTKQPSNLSKHMKKFHADTLKNEAPERK 406

Query:   230 DSFRSSTKKPGKYGVLIVKGSNISTMRVTSPSSQELTDDHSEDIEEYHVKHDDTSI 285
             DS R S+++  K   L  K +    +   S   ++    H     EYH K+ D ++
Sbjct:   407 DSGRQSSRQVAK---LDAKKTFHCDICDASFMREDSLRSHKRQHSEYHSKNSDVTV 459

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5JWM1 ZFP64 "Zinc finger protein 64 homolog, isoforms 1 and 2" [Homo sapiens (taxid:9606)]

 Score = 305 (112.4 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 73/228 (32%), Positives = 111/228 (48%)

Query:     1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
             ++ H+R H+G KPY C  C++ +A  SS+N HL+I H ++   +  I    S   S +  
Sbjct:   188 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQICPYASRNSSQLTV 246

Query:    61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFC-FQCFTQNVSL 119
               R      P     F C +C      S D++RH+R H+GEKPFKC FC  +C T   +L
Sbjct:   247 HLRSHTGDAP-----FQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRC-TMKGNL 300

Query:   120 QTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM 179
             ++HIRIKH+              C  C D L +    L +H++  +    E       C 
Sbjct:   301 KSHIRIKHS---------GNNFKCPHC-DFLGDSKATLRKHSRVHQSEHPEK------CS 344

Query:   180 VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
              C Y C    +++ H R H  D+P++C +CS    +  NL +H+K  H
Sbjct:   345 ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 392

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9NPA5 ZFP64 "Zinc finger protein 64 homolog, isoforms 1 and 2" [Homo sapiens (taxid:9606)]

 Score = 305 (112.4 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 73/228 (32%), Positives = 111/228 (48%)

Query:     1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
             ++ H+R H+G KPY C  C++ +A  SS+N HL+I H ++   +  I    S   S +  
Sbjct:   190 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQICPYASRNSSQLTV 248

Query:    61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFC-FQCFTQNVSL 119
               R      P     F C +C      S D++RH+R H+GEKPFKC FC  +C T   +L
Sbjct:   249 HLRSHTGDAP-----FQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRC-TMKGNL 302

Query:   120 QTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM 179
             ++HIRIKH+              C  C D L +    L +H++  +    E       C 
Sbjct:   303 KSHIRIKHS---------GNNFKCPHC-DFLGDSKATLRKHSRVHQSEHPEK------CS 346

Query:   180 VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
              C Y C    +++ H R H  D+P++C +CS    +  NL +H+K  H
Sbjct:   347 ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 394

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2R5D8 ZFP64 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 305 (112.4 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 83/305 (27%), Positives = 138/305 (45%)

Query:     1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
             ++ H+R H+G KPY C  C++ +A  SS+N HL+I H ++   +  I    S   S +  
Sbjct:   190 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQICPYASRNSSQLTV 248

Query:    61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFC-FQCFTQNVSL 119
               R      P     F C +C      S D++RH+R H+GEKPFKC FC  +C T   +L
Sbjct:   249 HLRSHTGDAP-----FQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRC-TMKGNL 302

Query:   120 QTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM 179
             ++HIRIKH+              C  C D L +    L +H++  +    E       C 
Sbjct:   303 KSHIRIKHS---------GNNFKCPHC-DFLGDSKATLRKHSRVHQSEHPEK------CS 346

Query:   180 VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS--YDSFRSSTK 237
              C Y C    +++ H R H  D+P++C +CS    +  NL +H+K  H     +  S  K
Sbjct:   347 DCSYSCSSKAALRIHERIHCTDRPFKCHYCSFDTKQPSNLSKHMKKFHGDMVKTEVSERK 406

Query:   238 KPGKYGVL-IVKGSNISTMRVTSPSSQELTDDHSEDIEEYHVKHDDTSIQHEETCVQYEY 296
               G+     + K     T       +  + +D     +  H ++++     + T +Q++ 
Sbjct:   407 DAGRQSSRQVAKLDAKKTFHCDICDASFMREDSLRSHKRQHSEYNENK-NSDVTVLQFQI 465

Query:   297 DDDER 301
             D  ++
Sbjct:   466 DPSKQ 470

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|A5GFU9 ZFP64 "Zinc finger protein 64 homolog (Mouse)" [Sus scrofa (taxid:9823)]

 Score = 302 (111.4 bits), Expect = 5.9e-26, P = 5.9e-26
 Identities = 73/228 (32%), Positives = 110/228 (48%)

Query:     1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
             ++ H R H+G KPY C  C++ +A  SS+N HL+I H ++   +  I    S   S +  
Sbjct:   190 LKTHTRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQICPYASRNSSQLTV 248

Query:    61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFC-FQCFTQNVSL 119
               R      P     F C +C      S D++RH+R H+GEKPFKC FC  +C T   +L
Sbjct:   249 HLRSHTGDAP-----FQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRC-TMKGNL 302

Query:   120 QTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM 179
             ++HIRIKH+              C  C D L +    L +H++  +    E       C 
Sbjct:   303 KSHIRIKHS---------GNNFKCPHC-DFLGDSKATLRKHSRVHQSEHPEK------CS 346

Query:   180 VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
              C Y C    +++ H R H  D+P++C +CS    +  NL +H+K  H
Sbjct:   347 ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 394

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NMT1 ZFP64 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 299 (110.3 bits), Expect = 7.0e-26, P = 7.0e-26
 Identities = 75/230 (32%), Positives = 115/230 (50%)

Query:     1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK-IQCRYSILKLQSHEESLVQ 59
             ++ H+R H+G KPY C  C++ +A  SS+N H +I   E+  +C+  I    S   S + 
Sbjct:   253 LKMHMRSHTGVKPYKCKHCDYAAADSSSLNKHQRIHSNERPFKCQ--ICPYASRNSSQLT 310

Query:    60 HAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFC-FQCFTQNVS 118
                R      P     F C +C      + D++RH+R H+GEKP+KC +C  +C  +  +
Sbjct:   311 VHLRSHTGDAP-----FQCQMCPAKFKINSDLKRHMRVHSGEKPYKCEYCEVRCAMKG-N 364

Query:   119 LQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYV- 177
             L++HIRIKH+        E+T + C  C     N  K  L+H        R +   + V 
Sbjct:   365 LKSHIRIKHS-------MENT-LKCPECEFQCGN--KTSLRHH------IRTHQPEQPVK 408

Query:   178 CMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
             C  C Y C    ++K H R H KD+P++C FCS    +R NL  H++  H
Sbjct:   409 CSECNYSCSNKAALKVHERIHCKDRPFKCEFCSFDTKQRSNLTTHVRKAH 458

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NMT2 ZFP64 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 299 (110.3 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 75/230 (32%), Positives = 115/230 (50%)

Query:     1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK-IQCRYSILKLQSHEESLVQ 59
             ++ H+R H+G KPY C  C++ +A  SS+N H +I   E+  +C+  I    S   S + 
Sbjct:   192 LKMHMRSHTGVKPYKCKHCDYAAADSSSLNKHQRIHSNERPFKCQ--ICPYASRNSSQLT 249

Query:    60 HAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFC-FQCFTQNVS 118
                R      P     F C +C      + D++RH+R H+GEKP+KC +C  +C  +  +
Sbjct:   250 VHLRSHTGDAP-----FQCQMCPAKFKINSDLKRHMRVHSGEKPYKCEYCEVRCAMKG-N 303

Query:   119 LQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYV- 177
             L++HIRIKH+        E+T + C  C     N  K  L+H        R +   + V 
Sbjct:   304 LKSHIRIKHS-------MENT-LKCPECEFQCGN--KTSLRHH------IRTHQPEQPVK 347

Query:   178 CMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
             C  C Y C    ++K H R H KD+P++C FCS    +R NL  H++  H
Sbjct:   348 CSECNYSCSNKAALKVHERIHCKDRPFKCEFCSFDTKQRSNLTTHVRKAH 397

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-110913-123 si:dkey-14o6.4 "si:dkey-14o6.4" [Danio rerio (taxid:7955)]

 Score = 287 (106.1 bits), Expect = 3.3e-25, P = 3.3e-25
 Identities = 80/226 (35%), Positives = 110/226 (48%)

Query:     1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI----QCRYSILKLQSHEES 56
             + +H+R H+GEKP+TC  C    +H SS+N H++I   EK     QC  S +   SH   
Sbjct:   193 LNKHMRIHTGEKPFTCTQCGKSFSHSSSLNQHMRIHTGEKPFTCPQCGKSFIN-SSH--- 248

Query:    57 LVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN 116
             L QH        +P     FTC  C      S  + +H+R HTGEKPF C  C + F+Q+
Sbjct:   249 LNQHIM-IHTGEKP-----FTCTQCGKSFNCSSSLNKHMRIHTGEKPFTCTQCGKSFSQS 302

Query:   117 VSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRY 176
              SL  HI I HT      K+  T   CT C    ++    L  H K    + +E     Y
Sbjct:   303 SSLNQHIMI-HT-----GKKPFT---CTQCGKS-FSQSSYLKNHMK-IHTSVKE-----Y 346

Query:   177 VCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
             VC+ C         +KRH R HT +KPY+C  CS +F++   L+ H
Sbjct:   347 VCLECEKTFITAAELKRHQRIHTGEKPYKCSHCSKRFTQLGTLKTH 392

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-110914-70 si:ch211-234c11.2 "si:ch211-234c11.2" [Danio rerio (taxid:7955)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 80/226 (35%), Positives = 110/226 (48%)

Query:     1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI----QCRYSILKLQSHEES 56
             + +H+R H+GEKP+TC  C    +H SS+N H++I   EK     QC  S +   SH   
Sbjct:   137 LNKHMRIHTGEKPFTCTQCGKSFSHSSSLNQHMRIHTGEKPFTCPQCGKSFIN-SSH--- 192

Query:    57 LVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN 116
             L QH        +P     FTC  C      S  + +H+R HTGEKPF C  C + F+Q+
Sbjct:   193 LNQHIM-IHTGEKP-----FTCTQCGKSFNCSSSLNKHMRIHTGEKPFTCTQCGKSFSQS 246

Query:   117 VSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRY 176
              SL  HI I HT      K+  T   CT C    ++    L  H K    + +E     Y
Sbjct:   247 SSLNQHIMI-HT-----GKKPFT---CTQCGKS-FSQSSYLKNHMK-IHTSVKE-----Y 290

Query:   177 VCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
             VC+ C         +KRH R HT +KPY+C  CS +F++   L+ H
Sbjct:   291 VCLECEKTFITVAELKRHQRIHTGEKPYKCSHCSKRFTQLGTLKTH 336

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	305
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	0.002

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 90  DMRRHIRRHTGEKPFKCNFCFQCFTQ 115
           ++RRH+R HTGEKP+KC  C + F+ 
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
KOG2462|consensus	279		99.95
KOG2462|consensus	279		99.94
KOG1074|consensus	958		99.93
KOG3608|consensus	467		99.9
KOG3608|consensus	467		99.89
KOG3623|consensus	1007		99.84
KOG1074|consensus	958		99.84
KOG3576|consensus	267		99.69
KOG3576|consensus	267		99.68
KOG3623|consensus	1007		99.57
PLN03086	567	PRLI-interacting factor K; Provisional	99.34
PLN03086	567	PRLI-interacting factor K; Provisional	99.1
PHA00733	128	hypothetical protein	99.08
PHA00733	128	hypothetical protein	99.03
PHA02768	55	hypothetical protein; Provisional	98.98
KOG3993|consensus	500		98.97
KOG3993|consensus	500		98.89
PHA02768	55	hypothetical protein; Provisional	98.8
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.71
PHA00616	44	hypothetical protein	98.69
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.6
PHA00616	44	hypothetical protein	98.43
PHA00732	79	hypothetical protein	98.26
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.26
PHA00732	79	hypothetical protein	98.09
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.08
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.99
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.98
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.93
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.93
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.89
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.77
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.72
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.62
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.59
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.58
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.52
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	97.23
KOG1146|consensus	1406		97.14
KOG2231|consensus	669		97.11
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.07
KOG2231|consensus	669		97.06
smart00355	26	ZnF_C2H2 zinc finger.	96.97
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.89
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.88
smart00355	26	ZnF_C2H2 zinc finger.	96.88
KOG2785|consensus	390		96.8
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.8
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.74
KOG2482|consensus	423		96.74
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.62
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.54
PRK04860	160	hypothetical protein; Provisional	96.43
KOG1146|consensus	1406		96.3
KOG2482|consensus	423		96.13
PRK04860	160	hypothetical protein; Provisional	95.78
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.53
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	95.51
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.28
KOG4173|consensus	253		95.21
KOG2893|consensus	341		95.05
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.03
KOG2893|consensus	341		94.82
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.78
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.63
COG4049	65	Uncharacterized protein containing archaeal-type C	94.16
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.82
COG4049	65	Uncharacterized protein containing archaeal-type C	93.79
KOG2785|consensus	390		93.75
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	92.93
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	92.86
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	92.6
COG5048	467	FOG: Zn-finger [General function prediction only]	91.94
KOG4173|consensus	253		91.3
COG5048	467	FOG: Zn-finger [General function prediction only]	88.75
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	88.39
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	88.22
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	87.99
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	87.5
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	87.31
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	86.94
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	86.32
KOG2186|consensus	276		85.86
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	85.5
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.87
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.42
KOG1280|consensus	381		84.19
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	83.83
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	83.06
COG1592	166	Rubrerythrin [Energy production and conversion]	83.0
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	82.46
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	82.37
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	81.0
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	80.86

>KOG2462|consensus

Probab=99.95  E-value=4.9e-29  Score=195.33  Aligned_cols=134  Identities=23%  Similarity=0.527  Sum_probs=126.9

Q ss_pred             CCcccCCCCccCCCcHHHHHHHHhhCC---CCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccc
Q psy4409          74 FNFTCLVCDYHSPRSIDMRRHIRRHTG---EKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPL  150 (305)
Q Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~  150 (305)
                      ..|+|..|++.+.+.+.|.+|.++|..   .+.|.|++|++.|.+...|..|+++ |..          ++.|.+|| +.
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirT-H~l----------~c~C~iCG-Ka  196 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRT-HTL----------PCECGICG-KA  196 (279)
T ss_pred             CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhc-cCC----------Cccccccc-cc
Confidence            359999999999999999999999965   5779999999999999999999999 665          89999999 99


Q ss_pred             hhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHh
Q psy4409         151 YNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKD  225 (305)
Q Consensus       151 ~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  225 (305)
                      |.....|+.|+++|+|+      +||.|+.|+++|...++|+.||++|.+.|+|+|..|++.|..++.|.+|...
T Consensus       197 FSRPWLLQGHiRTHTGE------KPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  197 FSRPWLLQGHIRTHTGE------KPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccchHHhhcccccccCC------CCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            99999999999999999      9999999999999999999999999999999999999999999999999875

>KOG2462|consensus

Probab=99.94  E-value=8.6e-28  Score=188.37  Aligned_cols=137  Identities=20%  Similarity=0.450  Sum_probs=126.6

Q ss_pred             CCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCC
Q psy4409         102 KPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVC  181 (305)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C  181 (305)
                      ..|+|+.|++.|.+..+|.+|.++ |..     ..+...+.|+.|+ +.+.+..+|..|+++|.        .+++|.+|
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~-H~~-----~~s~ka~~C~~C~-K~YvSmpALkMHirTH~--------l~c~C~iC  193 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQT-HRS-----LDSKKAFSCKYCG-KVYVSMPALKMHIRTHT--------LPCECGIC  193 (279)
T ss_pred             Cceeccccccccccccccchhhcc-ccc-----ccccccccCCCCC-ceeeehHHHhhHhhccC--------CCcccccc
Confidence            459999999999999999999999 554     3445589999999 99999999999999988        56899999


Q ss_pred             cccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCCCCCCCceeeecCCcccccee
Q psy4409         182 PYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNISTMRV  257 (305)
Q Consensus       182 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c~~~~~~~~~~~~~~~~h~~~  257 (305)
                      |+.|...+.|+-|+|+|+|+|||.|+.|++.|..++.|+.||++|-+.++|.|..|++    +|...+.|..|...
T Consensus       194 GKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~K----sFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  194 GKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGK----SFALKSYLNKHSES  265 (279)
T ss_pred             cccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhh----HHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999966    89999999998754

>KOG1074|consensus

Probab=99.93  E-value=2.3e-27  Score=209.86  Aligned_cols=85  Identities=27%  Similarity=0.563  Sum_probs=71.5

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccC---CCCccch
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCT---FCRDPLY  151 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~---~C~~~~~  151 (305)
                      +.+|-+|-++....+.|+.|+++|+|++||+|.+||+.|.++.+|+.||.. |....    .--..+.|+   +|- +-|
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~v-Hka~p----~~R~q~ScP~~~ic~-~kf  678 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSV-HKAKP----PARVQFSCPSTFICQ-KKF  678 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccc-cccCc----cccccccCCchhhhc-ccc
Confidence            488999999999999999999999999999999999999999999999998 54421    112467788   887 777


Q ss_pred             hcHHHHHHHHhhhc
Q psy4409         152 NDLKILLQHTKNCK  165 (305)
Q Consensus       152 ~~~~~l~~h~~~~~  165 (305)
                      ...-.|..|++.|.
T Consensus       679 tn~V~lpQhIriH~  692 (958)
T KOG1074|consen  679 TNAVTLPQHIRIHL  692 (958)
T ss_pred             cccccccceEEeec
Confidence            77777777777765

>KOG3608|consensus

Probab=99.90  E-value=1.9e-24  Score=173.98  Aligned_cols=211  Identities=18%  Similarity=0.375  Sum_probs=151.0

Q ss_pred             cccCC--CCCCcCcChHHHHhhhhhccccc-------------------cceeeehhhhccchHHHHHhhhccCCCCCCC
Q psy4409          13 PYTCY--FCNFKSAHMSSINNHLKIKHLEK-------------------IQCRYSILKLQSHEESLVQHAKRCSYVPRPN   71 (305)
Q Consensus        13 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~~-------------------~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~   71 (305)
                      -|.|.  .|+..|.+...|..|+..|..-.                   ..|-+.+.++    ..|++|+ +.|.+++. 
T Consensus       134 ~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k----~~LreH~-r~Hs~eKv-  207 (467)
T KOG3608|consen  134 NFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNK----YRLREHI-RTHSNEKV-  207 (467)
T ss_pred             hhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccH----HHHHHHH-HhcCCCeE-
Confidence            35665  48888888888888876665321                   1234444455    7888887 67777766 


Q ss_pred             CCCCcccCCCCccCCCcHHHHHHHHhh--CCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCcc
Q psy4409          72 IQFNFTCLVCDYHSPRSIDMRRHIRRH--TGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDP  149 (305)
Q Consensus        72 ~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~  149 (305)
                          ..|+.||..|.+...|-.|++..  ....+|.|..|.+.|.+...|..|+.. |..          .|+|+.|+ .
T Consensus       208 ----vACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~r-Hvn----------~ykCplCd-m  271 (467)
T KOG3608|consen  208 ----VACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVR-HVN----------CYKCPLCD-M  271 (467)
T ss_pred             ----EecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHH-hhh----------cccccccc-c
Confidence                78888888888888888887643  345678888888888888888888877 554          77888887 7


Q ss_pred             chhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc--chhhcCChHHHHHHHHhcC
Q psy4409         150 LYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       150 ~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh  227 (305)
                      ....++.|..|++..+..     .+||+|..|...|.+.+.|..|..+|. +..|+|..  |..+|.++.+|++|++.+|
T Consensus       272 tc~~~ssL~~H~r~rHs~-----dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  272 TCSSASSLTTHIRYRHSK-----DKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             CCCChHHHHHHHHhhhcc-----CCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence            777888888887654432     378888888888888888888888777 55688877  8888888888888888777


Q ss_pred             -C--ccccCCCCCCCCCCceeeecCCccccc
Q psy4409         228 -S--YDSFRSSTKKPGKYGVLIVKGSNISTM  255 (305)
Q Consensus       228 -~--~~~~~c~~c~~~~~~~~~~~~~~~~h~  255 (305)
                       +  ..+|.|..|..    .|..-.+|..|+
T Consensus       346 Eg~np~~Y~CH~Cdr----~ft~G~~L~~HL  372 (467)
T KOG3608|consen  346 EGNNPILYACHCCDR----FFTSGKSLSAHL  372 (467)
T ss_pred             cCCCCCceeeecchh----hhccchhHHHHH
Confidence             3  33678888865    344444444444

>KOG3608|consensus

Probab=99.89  E-value=2e-23  Score=168.13  Aligned_cols=190  Identities=24%  Similarity=0.454  Sum_probs=162.0

Q ss_pred             ccCC--CCCCcCcChHHHHhhhhhccccc----cceeeehhhhccchHHHHHhhhccCC-CCCCCCCCCcccCCCCccCC
Q psy4409          14 YTCY--FCNFKSAHMSSINNHLKIKHLEK----IQCRYSILKLQSHEESLVQHAKRCSY-VPRPNIQFNFTCLVCDYHSP   86 (305)
Q Consensus        14 ~~C~--~C~~~f~~~~~l~~H~~~h~~~~----~~c~~~~~~~~~~~~~l~~h~~~~h~-~~~~~~~~~~~C~~C~~~f~   86 (305)
                      +.|.  .|.+.|.+++.|+.|++.|.+++    +.|+..|.+.    ..|..|.++-.. ...     +|.|..|.+.|.
T Consensus       178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~----tkl~DH~rRqt~l~~n-----~fqC~~C~KrFa  248 (467)
T KOG3608|consen  178 TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTK----TKLFDHLRRQTELNTN-----SFQCAQCFKRFA  248 (467)
T ss_pred             eeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccc----cHHHHHHHhhhhhcCC-----chHHHHHHHHHh
Confidence            5665  48888888888888888888888    6788888887    777777654332 222     399999999999


Q ss_pred             CcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhcC
Q psy4409          87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKG  166 (305)
Q Consensus        87 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~  166 (305)
                      +...|..|+..|.  .-|+|+.|..+....+.|..|++..|..        ..+|+|..|+ ..+.....|..|...|..
T Consensus       249 TeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~--------dkpfKCd~Cd-~~c~~esdL~kH~~~HS~  317 (467)
T KOG3608|consen  249 TEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSK--------DKPFKCDECD-TRCVRESDLAKHVQVHSK  317 (467)
T ss_pred             HHHHHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhcc--------CCCccccchh-hhhccHHHHHHHHHhccc
Confidence            9999999999986  5699999999999999999999998764        3499999999 999999999999998885


Q ss_pred             ccccCCCCCcccCC--CcccccCcHHHHHHHHHhC-CC--CCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         167 AFRENDSYRYVCMV--CPYHCRQNESMKRHLRKHT-KD--KPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       167 ~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~-~~--~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                             -.|.|..  |...|++...|++|++.++ |.  .+|.|-.|.+.|++=..|..|+.+.|+.+
T Consensus       318 -------~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~  379 (467)
T KOG3608|consen  318 -------TVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFR  379 (467)
T ss_pred             -------cceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhccc
Confidence                   4789998  9999999999999988654 54  45999999999999999999999988753

>KOG3623|consensus

Probab=99.84  E-value=4.9e-22  Score=173.71  Aligned_cols=110  Identities=25%  Similarity=0.536  Sum_probs=90.3

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhccccc------cceeeehhhhccchHHHHHhhhccCCCCCCC--------CCCCcc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLEK------IQCRYSILKLQSHEESLVQHAKRCSYVPRPN--------IQFNFT   77 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~------~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~--------~~~~~~   77 (305)
                      ....|++|.+.+.....|..|++-.|...      ..|..+|..+    ..|-+|+ ..|....+.        .-..|+
T Consensus       209 qlltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyR----tQLErhm-~~hkpg~dqa~sltqsa~lRKFK  283 (1007)
T KOG3623|consen  209 QLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYR----TQLERHM-QLHKPGGDQAISLTQSALLRKFK  283 (1007)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhH----HHHHHHH-HhhcCCCcccccccchhhhcccc
Confidence            34678889888888888888887776655      5677888888    8888888 555433322        123499


Q ss_pred             cCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHh
Q psy4409          78 CLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIK  126 (305)
Q Consensus        78 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  126 (305)
                      |..|++.|..+-.|+.|+++|.|++||.|+-|+++|.....+..||...
T Consensus       284 CtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  284 CTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             ccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccccc
Confidence            9999999999999999999999999999999999999999999998764

>KOG1074|consensus

Probab=99.84  E-value=5.8e-22  Score=175.93  Aligned_cols=54  Identities=30%  Similarity=0.640  Sum_probs=50.9

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcC
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT  128 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  128 (305)
                      ..+|.+|.+.|.+.+.|+.|++.|+|++||+|.+||.+|.++.+|+.|...|+.
T Consensus       353 khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e  406 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHRE  406 (958)
T ss_pred             cchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeeccc
Confidence            378999999999999999999999999999999999999999999999988643

>KOG3576|consensus

Probab=99.69  E-value=1.3e-17  Score=124.84  Aligned_cols=127  Identities=31%  Similarity=0.598  Sum_probs=101.4

Q ss_pred             CCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCCCcH
Q psy4409          10 GEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSI   89 (305)
Q Consensus        10 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~~~   89 (305)
                      +...|.|.+|++.|.-...|.+|++-|..                  +++                |-|..||+.|....
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~------------------vkr----------------~lct~cgkgfndtf  159 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSD------------------VKR----------------HLCTFCGKGFNDTF  159 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccH------------------HHH----------------HHHhhccCcccchh
Confidence            45679999999999999999999976643                  222                67899999999999


Q ss_pred             HHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhcCccc
Q psy4409          90 DMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFR  169 (305)
Q Consensus        90 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~  169 (305)
                      +|+.|+++|+|.+||+|..|++.|...-.|..|++..|...                  ..+..               .
T Consensus       160 dlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~------------------~~yay---------------k  206 (267)
T KOG3576|consen  160 DLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQ------------------HQYAY---------------K  206 (267)
T ss_pred             hhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCch------------------HHHHH---------------H
Confidence            99999999999999999999999999999999999877651                  11111               1


Q ss_pred             cCCCCCcccCCCcccccCcHHHHHHHHHhCCCCC
Q psy4409         170 ENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKP  203 (305)
Q Consensus       170 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  203 (305)
                      +...+.|.|..||..-.....+..|+..|+...|
T Consensus       207 err~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  207 ERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             HhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            1122678888888888888888888888776544

>KOG3576|consensus

Probab=99.68  E-value=7.4e-18  Score=126.10  Aligned_cols=115  Identities=23%  Similarity=0.415  Sum_probs=90.1

Q ss_pred             cCccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChH
Q psy4409         138 STRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRD  217 (305)
Q Consensus       138 ~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  217 (305)
                      ...|.|.+|+ +.|.....|..|++.|...      +++.|..||++|...-.|++|+++|+|.+||+|..|++.|+.+-
T Consensus       115 ~d~ftCrvCg-K~F~lQRmlnrh~kch~~v------kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrc  187 (267)
T KOG3576|consen  115 QDSFTCRVCG-KKFGLQRMLNRHLKCHSDV------KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRC  187 (267)
T ss_pred             CCeeeeehhh-hhhhHHHHHHHHhhhccHH------HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhc
Confidence            3456677776 6666666666676666665      78889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC-----------ccccCCCCCCCCCCceeeecCCccccceecCCCCC
Q psy4409         218 NLRRHLKDQHS-----------YDSFRSSTKKPGKYGVLIVKGSNISTMRVTSPSSQ  263 (305)
Q Consensus       218 ~l~~H~~~hh~-----------~~~~~c~~c~~~~~~~~~~~~~~~~h~~~~~~~~~  263 (305)
                      .|..|+++.|+           .+.|.|..|+.    +.........|+..+.|.+.
T Consensus       188 sleshl~kvhgv~~~yaykerr~kl~vcedcg~----t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  188 SLESHLKKVHGVQHQYAYKERRAKLYVCEDCGY----TSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             cHHHHHHHHcCchHHHHHHHhhhheeeecccCC----CCCChhHHHHHHHhcCCCCH
Confidence            99999998887           35788999876    33455566777777777653

>KOG3623|consensus

Probab=99.57  E-value=5.4e-16  Score=136.34  Aligned_cols=119  Identities=24%  Similarity=0.511  Sum_probs=95.1

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhC--CCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHT--GEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYND  153 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~  153 (305)
                      .+|++|.+.+.....|+.|+...+  .+..|.|..|.++|..+..|.+||.+|-.+...                -....
T Consensus       211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dq----------------a~slt  274 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQ----------------AISLT  274 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcc----------------ccccc
Confidence            789999999999999999987543  345699999999999999999999995332100                00000


Q ss_pred             HHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHh
Q psy4409         154 LKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKD  225 (305)
Q Consensus       154 ~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  225 (305)
                      ..               ...+.|+|..||++|+.+-.|+.|+|+|.|+|||.|+-|++.|+....+..||..
T Consensus       275 qs---------------a~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  275 QS---------------ALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             ch---------------hhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            00               1127799999999999999999999999999999999999999999999999864

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.34  E-value=3.7e-12  Score=112.92  Aligned_cols=102  Identities=18%  Similarity=0.376  Sum_probs=69.7

Q ss_pred             eeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCCcc
Q psy4409         104 FKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPY  183 (305)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~  183 (305)
                      +.|+.|++.|. ...|..|+..+| .          ++.|+ |+ ..+ ....|..|+..+...      +++.|+.|++
T Consensus       454 ~~C~~Cgk~f~-~s~LekH~~~~H-k----------pv~Cp-Cg-~~~-~R~~L~~H~~thCp~------Kpi~C~fC~~  512 (567)
T PLN03086        454 VHCEKCGQAFQ-QGEMEKHMKVFH-E----------PLQCP-CG-VVL-EKEQMVQHQASTCPL------RLITCRFCGD  512 (567)
T ss_pred             ccCCCCCCccc-hHHHHHHHHhcC-C----------CccCC-CC-CCc-chhHHHhhhhccCCC------CceeCCCCCC
Confidence            46777777774 456777777744 2          66777 77 443 456777777666665      7788888888


Q ss_pred             ccc----------CcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         184 HCR----------QNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       184 ~f~----------~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      .|.          ....|..|..+. |.+++.|..||+.|.. ..|..|+...|.
T Consensus       513 ~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrl-rdm~~H~~~~h~  565 (567)
T PLN03086        513 MVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVML-KEMDIHQIAVHQ  565 (567)
T ss_pred             ccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeee-hhHHHHHHHhhc
Confidence            774          134777887774 7788888888877754 567777766554

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.10  E-value=1.5e-10  Score=102.83  Aligned_cols=130  Identities=15%  Similarity=0.258  Sum_probs=101.2

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCc--CcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYND  153 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~  153 (305)
                      -.|+.|...... ..|..|.... ....-.|+.  |+..|... .+..                  .+.|+.|+ ..|. 
T Consensus       408 V~C~NC~~~i~l-~~l~lHe~~C-~r~~V~Cp~~~Cg~v~~r~-el~~------------------H~~C~~Cg-k~f~-  464 (567)
T PLN03086        408 VECRNCKHYIPS-RSIALHEAYC-SRHNVVCPHDGCGIVLRVE-EAKN------------------HVHCEKCG-QAFQ-  464 (567)
T ss_pred             EECCCCCCccch-hHHHHHHhhC-CCcceeCCcccccceeecc-cccc------------------CccCCCCC-Cccc-
Confidence            479999987654 6666887543 345567984  99988322 2222                  45699999 7775 


Q ss_pred             HHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcC----------ChHHHHHHH
Q psy4409         154 LKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFS----------RRDNLRRHL  223 (305)
Q Consensus       154 ~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~----------~~~~l~~H~  223 (305)
                      ...|..|...++        .++.|+ ||..+ ....|..|+.+|.+.+++.|++|++.|.          ..+.|..|.
T Consensus       465 ~s~LekH~~~~H--------kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE  534 (567)
T PLN03086        465 QGEMEKHMKVFH--------EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHE  534 (567)
T ss_pred             hHHHHHHHHhcC--------CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHH
Confidence            577999999875        578999 99765 6789999999999999999999999995          246899998


Q ss_pred             HhcCCccccCCCCCCC
Q psy4409         224 KDQHSYDSFRSSTKKP  239 (305)
Q Consensus       224 ~~hh~~~~~~c~~c~~  239 (305)
                      .. .+.+++.|..|+.
T Consensus       535 ~~-CG~rt~~C~~Cgk  549 (567)
T PLN03086        535 SI-CGSRTAPCDSCGR  549 (567)
T ss_pred             Hh-cCCcceEccccCC
Confidence            87 5889999999965

>PHA00733 hypothetical protein

Probab=99.08  E-value=1.4e-10  Score=84.14  Aligned_cols=84  Identities=20%  Similarity=0.392  Sum_probs=61.7

Q ss_pred             CccccCCCCccchhcHHHHHHH--HhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCCh
Q psy4409         139 TRIYCTFCRDPLYNDLKILLQH--TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRR  216 (305)
Q Consensus       139 ~~~~C~~C~~~~~~~~~~l~~h--~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  216 (305)
                      .++.|.+|. ..+.....|..+  +..+.   ...+.++|.|+.|++.|.+...|..|++.|  ..+|.|..|++.|...
T Consensus        39 ~~~~~~~~~-~~~~~~~~l~~~~~l~~~~---~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~  112 (128)
T PHA00733         39 KRLIRAVVK-TLIYNPQLLDESSYLYKLL---TSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNT  112 (128)
T ss_pred             hhHHHHHHh-hhccChhhhcchHHHHhhc---ccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCH
Confidence            355666665 555554444444  11111   111237899999999999999999999976  3579999999999999


Q ss_pred             HHHHHHHHhcCC
Q psy4409         217 DNLRRHLKDQHS  228 (305)
Q Consensus       217 ~~l~~H~~~hh~  228 (305)
                      ..|..|+...|+
T Consensus       113 ~sL~~H~~~~h~  124 (128)
T PHA00733        113 DSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHHHhcC
Confidence            999999998887

>PHA00733 hypothetical protein

Probab=99.03  E-value=3.2e-10  Score=82.32  Aligned_cols=52  Identities=27%  Similarity=0.492  Sum_probs=36.5

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      |.|..|++.|.+...|..|++.+  ..+|.|+.|++.|.....|..|+...|..
T Consensus        74 y~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733         74 YVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             ccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcCc
Confidence            77777777777777777777654  24577777777777777777777766643

>PHA02768 hypothetical protein; Provisional

Probab=98.98  E-value=2e-10  Score=68.43  Aligned_cols=43  Identities=28%  Similarity=0.427  Sum_probs=34.5

Q ss_pred             CcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHH
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNL  219 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  219 (305)
                      -|.|+.||+.|...+.|..|+++|+  ++|+|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            4678888888888888888888887  678888888888776655

>KOG3993|consensus

Probab=98.97  E-value=1.3e-10  Score=97.01  Aligned_cols=52  Identities=17%  Similarity=0.427  Sum_probs=46.9

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH  127 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  127 (305)
                      |.|+.|...|.....|.+|.--.+-...|+|+.|+++|.-..+|..|.++|-
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHK  319 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHK  319 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccC
Confidence            9999999999999999999865555567999999999999999999999943

>KOG3993|consensus

Probab=98.89  E-value=2e-10  Score=95.85  Aligned_cols=178  Identities=16%  Similarity=0.232  Sum_probs=118.2

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCCCcHHH
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDM   91 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~~~~l   91 (305)
                      .-|.|..|...|.....|..|.                     ..-..|+             .|+|+.|+|+|....+|
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHr---------------------C~RIV~v-------------EYrCPEC~KVFsCPANL  311 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHR---------------------CPRIVHV-------------EYRCPECDKVFSCPANL  311 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhcc---------------------CCeeEEe-------------eecCCcccccccCchhh
Confidence            3589999999999999999996                     2211222             19999999999999999


Q ss_pred             HHHHHhhCC---------------------------------CCCeeCCcCcccccChHHHHHHHHHhcCccccccc---
Q psy4409          92 RRHIRRHTG---------------------------------EKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK---  135 (305)
Q Consensus        92 ~~H~~~h~~---------------------------------~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~---  135 (305)
                      ..|++.|..                                 +..|.|.+|++.|..+..|+.|+.+||........   
T Consensus       312 ASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~  391 (500)
T KOG3993|consen  312 ASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPK  391 (500)
T ss_pred             hhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccC
Confidence            999998831                                 12489999999999999999999996654221100   


Q ss_pred             -----cCcCccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccch
Q psy4409         136 -----QESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCS  210 (305)
Q Consensus       136 -----~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  210 (305)
                           .....+.|..|. ..+.....--.+..     +-........|+.|+..+.++..--.+.+.-.....|.|.+|.
T Consensus       392 f~~s~~~~l~~~~~~~a-~h~~a~~~~g~~vl-----~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~  465 (500)
T KOG3993|consen  392 FLLSRVIPLMHFNQAVA-THSSASDSHGDEVL-----YVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCP  465 (500)
T ss_pred             cchhhcccccccccccc-ccccccccccccee-----eeeccccccCCCCCCCCcccCCCCCccccccchhhccccccch
Confidence                 000112233333 11111110000000     0011112356888888887766555555555556679999999


Q ss_pred             hhcCChHHHHHHHHhcCCc
Q psy4409         211 LKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       211 ~~f~~~~~l~~H~~~hh~~  229 (305)
                      ..|.+...|.+|+..-|..
T Consensus       466 atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  466 ATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             HhhhcCcchHhHhhhcChH
Confidence            9999999999999887753

>PHA02768 hypothetical protein; Provisional

Probab=98.80  E-value=2.1e-09  Score=64.04  Aligned_cols=42  Identities=19%  Similarity=0.389  Sum_probs=37.5

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHH
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSL  119 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  119 (305)
                      |.|+.||+.|.....|..|+++|.  ++|+|..|++.|...+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            899999999999999999999988  689999999999876654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.71  E-value=7.9e-09  Score=52.62  Aligned_cols=26  Identities=46%  Similarity=1.140  Sum_probs=22.7

Q ss_pred             HHHHHHHHhCCCCCccCccchhhcCC
Q psy4409         190 SMKRHLRKHTKDKPYECGFCSLKFSR  215 (305)
Q Consensus       190 ~l~~H~~~h~~~~~~~C~~C~~~f~~  215 (305)
                      +|..|+++|++++||.|++|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47889999999999999999998864

...

>PHA00616 hypothetical protein

Probab=98.69  E-value=9.2e-09  Score=58.24  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=28.7

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      ||+|+.||+.|..++.|..|+++||+++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            5788888888888888888888888888887764

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.60  E-value=4.1e-08  Score=49.94  Aligned_cols=26  Identities=54%  Similarity=1.255  Sum_probs=23.5

Q ss_pred             HHHHHHHhhCCCCCeeCCcCcccccC
Q psy4409          90 DMRRHIRRHTGEKPFKCNFCFQCFTQ  115 (305)
Q Consensus        90 ~l~~H~~~h~~~~~~~C~~C~~~f~~  115 (305)
                      +|..|+++|.+++||.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999999999999999999964

...

>PHA00616 hypothetical protein

Probab=98.43  E-value=1e-07  Score=53.99  Aligned_cols=39  Identities=21%  Similarity=0.392  Sum_probs=34.0

Q ss_pred             CcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhc
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKF  213 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  213 (305)
                      ||+|+.||+.|...+.|..|++.|++++++.|++=-..|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f   39 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF   39 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEEEEE
Confidence            589999999999999999999999999999987644444

>PHA00732 hypothetical protein

Probab=98.26  E-value=5.7e-07  Score=59.12  Aligned_cols=47  Identities=26%  Similarity=0.595  Sum_probs=36.9

Q ss_pred             CcccCCCcccccCcHHHHHHHHH-hCCCCCccCccchhhcCChHHHHHHHHhcC
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRK-HTKDKPYECGFCSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  227 (305)
                      ||.|..|++.|.+...|..|++. |.   ++.|+.|++.|.   .|..|+..+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccC
Confidence            47899999999999999999884 54   358999999997   4777875443

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.26  E-value=1.6e-06  Score=52.85  Aligned_cols=51  Identities=33%  Similarity=0.626  Sum_probs=36.9

Q ss_pred             CcccCCCcccccCcHHHHHHHHH-hCCC-CCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRK-HTKD-KPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~-~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      .|.||.|++. .+...|..|... |..+ +.+.||+|...+.  ..|..|+..+|+
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            4778888884 456788888554 5543 4688999988655  488888887764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.09  E-value=2.2e-06  Score=56.33  Aligned_cols=44  Identities=30%  Similarity=0.729  Sum_probs=37.0

Q ss_pred             cccCCCCccCCCcHHHHHHHHh-hCCCCCeeCCcCcccccChHHHHHHHHH
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRR-HTGEKPFKCNFCFQCFTQNVSLQTHIRI  125 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (305)
                      |.|..|++.|.+...|+.|++. |.   ++.|+.|++.|.   .|..|+.+
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            8899999999999999999984 54   358999999997   47778765

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.08  E-value=7.2e-06  Score=50.01  Aligned_cols=49  Identities=29%  Similarity=0.509  Sum_probs=33.9

Q ss_pred             cccCCCCccCCCcHHHHHHHHh-hCCC-CCeeCCcCcccccChHHHHHHHHHhc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRR-HTGE-KPFKCNFCFQCFTQNVSLQTHIRIKH  127 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~-h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~H  127 (305)
                      |.|++|++ ..+...|..|... |..+ +.+.||+|...+.  ..|..|+...|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            78888888 4556778888664 4432 4688888887644  37777877755

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.99  E-value=2.2e-06  Score=42.27  Aligned_cols=23  Identities=22%  Similarity=0.571  Sum_probs=21.4

Q ss_pred             ccCCCCCCcCcChHHHHhhhhhc
Q psy4409          14 YTCYFCNFKSAHMSSINNHLKIK   36 (305)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~h   36 (305)
                      |.|+.|++.|.+...|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999873

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.98  E-value=3.4e-06  Score=41.56  Aligned_cols=22  Identities=41%  Similarity=1.035  Sum_probs=13.1

Q ss_pred             ccCccchhhcCChHHHHHHHHh
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKD  225 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~  225 (305)
                      |.|++|++.|.++..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.93  E-value=5.4e-06  Score=57.96  Aligned_cols=26  Identities=27%  Similarity=0.525  Sum_probs=0.0

Q ss_pred             cCCCCCCcCcChHHHHhhhhhccccc
Q psy4409          15 TCYFCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus        15 ~C~~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      .|.+|+..|.+...|..|+...|+..
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~   26 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFD   26 (100)
T ss_dssp             --------------------------
T ss_pred             Cccccccccccccccccccccccccc
Confidence            49999999999999999998777643

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.93  E-value=6e-06  Score=41.08  Aligned_cols=24  Identities=29%  Similarity=0.933  Sum_probs=15.5

Q ss_pred             ccCccchhhcCChHHHHHHHHhcC
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~hh  227 (305)
                      |.|++|++.|.++..|..|+..+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567777777777777777776654

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.89  E-value=6.2e-06  Score=41.04  Aligned_cols=24  Identities=21%  Similarity=0.582  Sum_probs=20.5

Q ss_pred             ccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          14 YTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      |.|++|++.|.+...|+.|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999998875

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.77  E-value=1.1e-05  Score=41.45  Aligned_cols=26  Identities=19%  Similarity=0.466  Sum_probs=24.0

Q ss_pred             cccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      ||.|..|++.|.+...|..|++.|+.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999988764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.72  E-value=0.00015  Score=59.92  Aligned_cols=99  Identities=27%  Similarity=0.500  Sum_probs=61.2

Q ss_pred             CcHHHHHHHHhhCCCCC----eeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHh
Q psy4409          87 RSIDMRRHIRRHTGEKP----FKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTK  162 (305)
Q Consensus        87 ~~~~l~~H~~~h~~~~~----~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~  162 (305)
                      +...|+.|...-..+.-    -.|..|+..|.+-..|..|++..|..             |.+|+ .+-           
T Consensus       200 ~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~-------------ChICD-~v~-----------  254 (493)
T COG5236         200 RSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEA-------------CHICD-MVG-----------  254 (493)
T ss_pred             ecccccccccCCccccCcCCCchhhhccceecChHHHHHHHHhhhhh-------------hhhhh-ccC-----------
Confidence            34556666543222212    35888888888888888888876544             77776 221           


Q ss_pred             hhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc--ch----hhcCChHHHHHHHHhcCCcc
Q psy4409         163 NCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF--CS----LKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       163 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~----~~f~~~~~l~~H~~~hh~~~  230 (305)
                                      +.-..-|++...|..|.+.-+    |.|.+  |.    ..|.....|..|+..-|+..
T Consensus       255 ----------------p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~~  308 (493)
T COG5236         255 ----------------PIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELLEHLTRFHKVN  308 (493)
T ss_pred             ----------------ccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHHHHHHHHhhcc
Confidence                            122234777788888865422    55543  32    36888889999998877743

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.62  E-value=4.6e-05  Score=53.19  Aligned_cols=25  Identities=32%  Similarity=0.618  Sum_probs=0.0

Q ss_pred             eCCcCcccccChHHHHHHHHHhcCc
Q psy4409         105 KCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus       105 ~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      .|.+|+..|.+...|..|+...|..
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~   25 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGF   25 (100)
T ss_dssp             -------------------------
T ss_pred             Ccccccccccccccccccccccccc
Confidence            3777888887777788887776654

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.59  E-value=2.8e-05  Score=63.27  Aligned_cols=27  Identities=33%  Similarity=0.647  Sum_probs=23.5

Q ss_pred             CCcccCCC--CCCcCcChHHHHhhhhhcc
Q psy4409          11 EKPYTCYF--CNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        11 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~   37 (305)
                      +|||+||+  |+|.|.....|.-|+..-|
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH  375 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGH  375 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccc
Confidence            59999998  9999999999999985444

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.58  E-value=3.3e-05  Score=39.65  Aligned_cols=25  Identities=36%  Similarity=0.760  Sum_probs=15.3

Q ss_pred             CccCccchhhcCChHHHHHHHHhcC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh  227 (305)
                      ||.|..|++.|.+...|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            3566666666666666666665544

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.52  E-value=1.3e-05  Score=65.08  Aligned_cols=29  Identities=28%  Similarity=0.616  Sum_probs=25.0

Q ss_pred             CCCCeeCCc--CcccccChHHHHHHHHHhcC
Q psy4409         100 GEKPFKCNF--CFQCFTQNVSLQTHIRIKHT  128 (305)
Q Consensus       100 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~  128 (305)
                      +++||+|++  |.+.|.++..|+.|+.--|.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~  376 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQ  376 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhcccc
Confidence            358999998  99999999999999986553

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=97.23  E-value=0.00038  Score=55.18  Aligned_cols=91  Identities=25%  Similarity=0.484  Sum_probs=57.6

Q ss_pred             CCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCccc
Q psy4409          99 TGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVC  178 (305)
Q Consensus        99 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C  178 (305)
                      +|.+.|+|.+|... .-...-..|+.. -..      .+...|.|..|. ++                       ..|.|
T Consensus       138 hGGrif~CsfC~~f-lCEDDQFEHQAs-CQv------Le~E~~KC~SCN-rl-----------------------Gq~sC  185 (314)
T PF06524_consen  138 HGGRIFKCSFCDNF-LCEDDQFEHQAS-CQV------LESETFKCQSCN-RL-----------------------GQYSC  185 (314)
T ss_pred             CCCeEEEeecCCCe-eeccchhhhhhh-hhh------hhcccccccccc-cc-----------------------cchhh
Confidence            56778999999854 333344456554 222      233488888887 33                       45677


Q ss_pred             CCCcccccCcHHHHHHHHH----hCCCCCccCccchhhcCChHHHHHHHHhc
Q psy4409         179 MVCPYHCRQNESMKRHLRK----HTKDKPYECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       179 ~~C~~~f~~~~~l~~H~~~----h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      ..|..-|-.     .|.+.    -...++++||.||........|..-.++|
T Consensus       186 LRCK~cfCd-----dHvrrKg~ky~k~k~~PCPKCg~et~eTkdLSmStR~h  232 (314)
T PF06524_consen  186 LRCKICFCD-----DHVRRKGFKYEKGKPIPCPKCGYETQETKDLSMSTRSH  232 (314)
T ss_pred             hheeeeehh-----hhhhhcccccccCCCCCCCCCCCcccccccceeeeecc
Confidence            777666653     45443    12347899999999988877776555443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>KOG1146|consensus

Probab=97.14  E-value=0.0002  Score=69.12  Aligned_cols=158  Identities=20%  Similarity=0.289  Sum_probs=99.4

Q ss_pred             cCCCCccCCCcHHHHHHHH-hhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHH
Q psy4409          78 CLVCDYHSPRSIDMRRHIR-RHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKI  156 (305)
Q Consensus        78 C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~  156 (305)
                      |.-|+..+.+...+.-|+. .+.-.+.++|+.|+..|.....|..||+.+|....      .     ..|        ..
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~------~-----~~c--------~~  499 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQ------S-----AYC--------KA  499 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccc------h-----hHh--------Hh
Confidence            3445555555555555544 34445889999999999999999999999876410      0     111        12


Q ss_pred             HHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHH--hC-----------------------------------
Q psy4409         157 LLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRK--HT-----------------------------------  199 (305)
Q Consensus       157 l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~-----------------------------------  199 (305)
                      ...|.+.-.+........+|.|..|...+....+|..|++.  |.                                   
T Consensus       500 gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~a  579 (1406)
T KOG1146|consen  500 GQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSA  579 (1406)
T ss_pred             ccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCC
Confidence            22333333334444455789999999999999999999864  21                                   


Q ss_pred             C------CCCccCccchhhcCChHHHHHHHHh-cCCccccCCCCCCCCCCceeeecCCccccceec
Q psy4409         200 K------DKPYECGFCSLKFSRRDNLRRHLKD-QHSYDSFRSSTKKPGKYGVLIVKGSNISTMRVT  258 (305)
Q Consensus       200 ~------~~~~~C~~C~~~f~~~~~l~~H~~~-hh~~~~~~c~~c~~~~~~~~~~~~~~~~h~~~~  258 (305)
                      +      ...|.|.+|+..-.-...|+-|+.. +|...|-.+..+.-    .+.....+..+.+.+
T Consensus       580 gs~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~i----t~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  580 GSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNI----TSSLASLLGGQGRLP  641 (1406)
T ss_pred             CCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHHHhhhcc----hhhccccccCcCCCC
Confidence            0      1138999999888888888888874 44433344444322    333444444444444

>KOG2231|consensus

Probab=97.11  E-value=0.0016  Score=59.66  Aligned_cols=118  Identities=19%  Similarity=0.278  Sum_probs=73.1

Q ss_pred             CcChHHHHhhhhhccccc-----------cceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCCCcHHH
Q psy4409          23 SAHMSSINNHLKIKHLEK-----------IQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDM   91 (305)
Q Consensus        23 f~~~~~l~~H~~~h~~~~-----------~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~~~~l   91 (305)
                      |.+...|..|+...|...           ..+.....+.    ..|..|+......... -..--.|..|...|.....|
T Consensus       124 ~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~----~el~~h~~~gd~d~~s-~rGhp~C~~C~~~fld~~el  198 (669)
T KOG2231|consen  124 FKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTR----AELNLHLMFGDPDDES-CRGHPLCKFCHERFLDDDEL  198 (669)
T ss_pred             hhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehH----HHHHHHHhcCCCcccc-ccCCccchhhhhhhccHHHH
Confidence            347788999996666543           1222222233    6777787655442211 11125788999999999999


Q ss_pred             HHHHHhhCCCCCeeCCcC------cccccChHHHHHHHHHhcCccccccccCcCccccC--CCCccchhcHHHHHHHHh
Q psy4409          92 RRHIRRHTGEKPFKCNFC------FQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCT--FCRDPLYNDLKILLQHTK  162 (305)
Q Consensus        92 ~~H~~~h~~~~~~~C~~C------~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~--~C~~~~~~~~~~l~~h~~  162 (305)
                      ..|++.++    |.|.+|      +..|.....|..|.+..|.             .|.  .|..+.|.....+..+++
T Consensus       199 ~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~Hf-------------lCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  199 YRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHF-------------LCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             HHhhccce----eheeecCcccccchhcccchHHHHHhhhcCc-------------cccccccccceeeehhHHHHHHH
Confidence            99988765    556555      4456667889999888654             365  566455554444444444

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.07  E-value=0.0003  Score=34.86  Aligned_cols=24  Identities=50%  Similarity=0.992  Sum_probs=14.8

Q ss_pred             ccCccchhhcCChHHHHHHHHhcCC
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      |+|+.|+.... +..|.+|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            56777776666 6677777776653

>KOG2231|consensus

Probab=97.06  E-value=0.0012  Score=60.42  Aligned_cols=101  Identities=18%  Similarity=0.413  Sum_probs=58.7

Q ss_pred             CCcHHHHHHHHhhCCCCCeeCCcC---------cccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHH
Q psy4409          86 PRSIDMRRHIRRHTGEKPFKCNFC---------FQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKI  156 (305)
Q Consensus        86 ~~~~~l~~H~~~h~~~~~~~C~~C---------~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~  156 (305)
                      .+...|+.|+..-+.  .+.|.+|         .....+...|..|+..--..   + ..-...-.|..|. ..|.....
T Consensus       125 ~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d---~-~s~rGhp~C~~C~-~~fld~~e  197 (669)
T KOG2231|consen  125 KSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPD---D-ESCRGHPLCKFCH-ERFLDDDE  197 (669)
T ss_pred             hHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCc---c-ccccCCccchhhh-hhhccHHH
Confidence            367778888753221  2233322         22334456677776552110   1 1112245788888 77777788


Q ss_pred             HHHHHhhhcCccccCCCCCcccCCC------cccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         157 LLQHTKNCKGAFRENDSYRYVCMVC------PYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       157 l~~h~~~~~~~~~~~~~~~~~C~~C------~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |..|++..+.          .|..|      +..|.....|..|.+.++    |.|.
T Consensus       198 l~rH~~~~h~----------~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE  240 (669)
T KOG2231|consen  198 LYRHLRFDHE----------FCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCE  240 (669)
T ss_pred             HHHhhcccee----------heeecCcccccchhcccchHHHHHhhhcC----cccc
Confidence            8888776543          46666      345667788888877765    5666

>smart00355 ZnF_C2H2 zinc finger

Probab=96.97  E-value=0.00056  Score=34.32  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=21.6

Q ss_pred             ccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          14 YTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      |.|+.|++.|.+...|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999998653

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.89  E-value=0.0008  Score=39.12  Aligned_cols=29  Identities=34%  Similarity=0.646  Sum_probs=13.3

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      .|-.||+|+..+.+...|++|+...|+.+
T Consensus        23 ~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   23 QPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             --EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            44555555555555555555555555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.88  E-value=0.00048  Score=34.09  Aligned_cols=24  Identities=33%  Similarity=0.793  Sum_probs=19.7

Q ss_pred             ccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          14 YTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      |.|+.|++... ...|..|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999999998 9999999998764

>smart00355 ZnF_C2H2 zinc finger

Probab=96.88  E-value=0.00081  Score=33.69  Aligned_cols=23  Identities=26%  Similarity=0.752  Sum_probs=17.3

Q ss_pred             ccCccchhhcCChHHHHHHHHhc
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      |.|..|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            56777888888888888887744

>KOG2785|consensus

Probab=96.80  E-value=0.0017  Score=54.81  Aligned_cols=52  Identities=25%  Similarity=0.491  Sum_probs=44.5

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCC-----------------------CCccCccch---hhcCChHHHHHHHHh
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKD-----------------------KPYECGFCS---LKFSRRDNLRRHLKD  225 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~  225 (305)
                      .|-.|..|+..+.+...-..||..+++-                       .-+.|-.|+   +.|.+....+.||..
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            4578999999999999999999988762                       127899999   999999999999973

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.80  E-value=0.00051  Score=34.35  Aligned_cols=23  Identities=30%  Similarity=0.611  Sum_probs=21.0

Q ss_pred             ccCCCCCCcCcChHHHHhhhhhc
Q psy4409          14 YTCYFCNFKSAHMSSINNHLKIK   36 (305)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~h   36 (305)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999754

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.74  E-value=0.0017  Score=37.82  Aligned_cols=31  Identities=29%  Similarity=0.523  Sum_probs=22.3

Q ss_pred             CCCcccCCCcccccCcHHHHHHHHHhCCCCC
Q psy4409         173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKP  203 (305)
Q Consensus       173 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  203 (305)
                      ..|-.|++|+..+....+|++|+.+.++.+|
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3678999999999999999999998887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2482|consensus

Probab=96.74  E-value=0.0012  Score=54.50  Aligned_cols=189  Identities=22%  Similarity=0.369  Sum_probs=94.3

Q ss_pred             cccCCCCCCcCc-ChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCCCcHHH
Q psy4409          13 PYTCYFCNFKSA-HMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDM   91 (305)
Q Consensus        13 ~~~C~~C~~~f~-~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~~~~l   91 (305)
                      -..|-.|+..+. .++.+..|+-..|+-...-.-.....    ..|..|....-.        .+.|-+|.+.|+.+..|
T Consensus       144 slqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyv----nelLehLkekL~--------r~~CLyCekifrdkntL  211 (423)
T KOG2482|consen  144 SLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYV----NELLEHLKEKLE--------RLRCLYCEKIFRDKNTL  211 (423)
T ss_pred             eeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeH----HHHHHHHHHHHh--------hheeeeeccccCCcHHH
Confidence            457888987654 45566777765555442222222222    445555422111        28999999999999999


Q ss_pred             HHHHHh--hCCCCC--------eeCCc--CcccccC-hHHHHHHHHHh--cCccc------cccccCcCccccCCCCccc
Q psy4409          92 RRHIRR--HTGEKP--------FKCNF--CFQCFTQ-NVSLQTHIRIK--HTRLF------GQDKQESTRIYCTFCRDPL  150 (305)
Q Consensus        92 ~~H~~~--h~~~~~--------~~C~~--C~~~f~~-~~~l~~H~~~~--H~~~~------~~~~~~~~~~~C~~C~~~~  150 (305)
                      +.||+.  |-...|        |.=.+  =|++..- .+.+.  +.+.  +..-.      .+.........|-+|. .+
T Consensus       212 keHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~d--ret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~-~~  288 (423)
T KOG2482|consen  212 KEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDD--RETNEDINETDDTWSDWNEDDAEALSVVCLFCT-NF  288 (423)
T ss_pred             HHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhh--hhhhccccccccchhhhhcCCCCccceEEEeec-cc
Confidence            999974  432222        22221  1222111 11111  1110  11000      0001122236899998 88


Q ss_pred             hhcHHHHHHHHhhhcCc-cccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHH
Q psy4409         151 YNDLKILLQHTKNCKGA-FRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK  224 (305)
Q Consensus       151 ~~~~~~l~~h~~~~~~~-~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  224 (305)
                      ..+...|..|++..+.- +.... ..     =+.-|-..--+.+-.|.  ....-.|..|...|-....|+.||.
T Consensus       289 ~en~~~l~eHmk~vHe~Dl~Ki~-sd-----~~Ln~YqrvrviNyiRk--q~~~~~c~~cd~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  289 YENPVFLFEHMKIVHEFDLLKIQ-SD-----YSLNFYQRVRVINYIRK--QKKKSRCAECDLSFWKEPGLLIHMV  355 (423)
T ss_pred             hhhHHHHHHHHHHHHHhhHHhhc-cc-----cccchhhhhhHHHHHHH--HhhccccccccccccCcchhhhhcc
Confidence            88888999998875542 10000 00     00111111111222111  1122467777788888888888875

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.62  E-value=0.00095  Score=33.35  Aligned_cols=22  Identities=36%  Similarity=0.928  Sum_probs=14.0

Q ss_pred             ccCccchhhcCChHHHHHHHHh
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKD  225 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~  225 (305)
                      |.|.+|+..|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4566666666666666666653

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.54  E-value=0.0015  Score=33.31  Aligned_cols=23  Identities=17%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             cccCCCCCCcCcChHHHHhhhhh
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKI   35 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~   35 (305)
                      .|.|..|++.|.+...|..|++.
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCCcccCCCCcCCHHHHHHHHcc
Confidence            38899999999999999999965

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=96.43  E-value=0.0014  Score=49.57  Aligned_cols=39  Identities=23%  Similarity=0.571  Sum_probs=31.8

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCCh
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRR  216 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  216 (305)
                      .+|.|. |+.   ....+..|.++|.+.++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            568887 887   667788899999998899999998887654

>KOG1146|consensus

Probab=96.30  E-value=0.0034  Score=61.09  Aligned_cols=110  Identities=20%  Similarity=0.353  Sum_probs=74.5

Q ss_pred             ccCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCCC
Q psy4409           8 HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPR   87 (305)
Q Consensus         8 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~   87 (305)
                      |.-.+.|+|+.|+..|.....|..|+|..|.+...   .+-..      ...|.+..-........++|.|..|...+..
T Consensus       460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c~~------gq~~~~~arg~~~~~~~~p~~C~~C~~sttt  530 (1406)
T KOG1146|consen  460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYCKA------GQNHPRLARGEVYRCPGKPYPCRACNYSTTT  530 (1406)
T ss_pred             ecccccccCCccchhhhhHHHhhhcccccccccch---hHhHh------ccccccccccccccCCCCcccceeeeeeeec
Confidence            44458899999999999999999999997766522   11111      1111111110011122235999999999999


Q ss_pred             cHHHHHHHHh--hC-----------------------------------C------CCCeeCCcCcccccChHHHHHHHH
Q psy4409          88 SIDMRRHIRR--HT-----------------------------------G------EKPFKCNFCFQCFTQNVSLQTHIR  124 (305)
Q Consensus        88 ~~~l~~H~~~--h~-----------------------------------~------~~~~~C~~C~~~f~~~~~l~~H~~  124 (305)
                      ...|.+|+..  |.                                   +      .-.+.|.+|++...-...|+.||.
T Consensus       531 ng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmt  610 (1406)
T KOG1146|consen  531 NGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMT  610 (1406)
T ss_pred             chHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccc
Confidence            9999999853  20                                   0      113789999999888888998887


Q ss_pred             Hh
Q psy4409         125 IK  126 (305)
Q Consensus       125 ~~  126 (305)
                      .-
T Consensus       611 ss  612 (1406)
T KOG1146|consen  611 AS  612 (1406)
T ss_pred             cC
Confidence            64

>KOG2482|consensus

Probab=96.13  E-value=0.049  Score=45.41  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=41.1

Q ss_pred             ccCccchhhcCChHHHHHHHHhcCCc---------------------------cccCCCCCCCCCCceeeecCCccccce
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQHSY---------------------------DSFRSSTKKPGKYGVLIVKGSNISTMR  256 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~hh~~---------------------------~~~~c~~c~~~~~~~~~~~~~~~~h~~  256 (305)
                      ..|-.|....-+...|..||...|.-                           ..-.|-.|.    ..|.....|..||.
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd----~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECD----LSFWKEPGLLIHMV  355 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccccccc----ccccCcchhhhhcc
Confidence            47889998888889999999988841                           123455554    27888999999997


Q ss_pred             ecCCCCC
Q psy4409         257 VTSPSSQ  263 (305)
Q Consensus       257 ~~~~~~~  263 (305)
                      .+.+-+.
T Consensus       356 e~k~l~i  362 (423)
T KOG2482|consen  356 EDKHLSI  362 (423)
T ss_pred             ccccccc
Confidence            6665443

>PRK04860 hypothetical protein; Provisional

Probab=95.78  E-value=0.0077  Score=45.55  Aligned_cols=38  Identities=26%  Similarity=0.645  Sum_probs=31.8

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccCh
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN  116 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  116 (305)
                      +|.|. |+.   ....++.|.++|.++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            58997 887   667888999999999999999999887654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.53  E-value=0.0027  Score=32.35  Aligned_cols=21  Identities=33%  Similarity=0.825  Sum_probs=13.1

Q ss_pred             ccCccchhhcCChHHHHHHHH
Q psy4409         204 YECGFCSLKFSRRDNLRRHLK  224 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~  224 (305)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            456666666666666666654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=95.51  E-value=0.024  Score=45.37  Aligned_cols=66  Identities=12%  Similarity=0.323  Sum_probs=32.4

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHh--CCCCCccCccchhhcCChHHHH-------HHHHhc----CCccccCCCCCCCC
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKH--TKDKPYECGFCSLKFSRRDNLR-------RHLKDQ----HSYDSFRSSTKKPG  240 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~C~~~f~~~~~l~-------~H~~~h----h~~~~~~c~~c~~~  240 (305)
                      +.|+|.+|....---..| .|+-.-  -....|+|..|++ +...+-|+       .|+++.    -..+++.|+.|+..
T Consensus       141 rif~CsfC~~flCEDDQF-EHQAsCQvLe~E~~KC~SCNr-lGq~sCLRCK~cfCddHvrrKg~ky~k~k~~PCPKCg~e  218 (314)
T PF06524_consen  141 RIFKCSFCDNFLCEDDQF-EHQASCQVLESETFKCQSCNR-LGQYSCLRCKICFCDDHVRRKGFKYEKGKPIPCPKCGYE  218 (314)
T ss_pred             eEEEeecCCCeeeccchh-hhhhhhhhhhccccccccccc-ccchhhhheeeeehhhhhhhcccccccCCCCCCCCCCCc
Confidence            677777776543322222 343221  1122355555553 22223232       455432    23478999999874


Q ss_pred             C
Q psy4409         241 K  241 (305)
Q Consensus       241 ~  241 (305)
                      .
T Consensus       219 t  219 (314)
T PF06524_consen  219 T  219 (314)
T ss_pred             c
Confidence            4

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.28  E-value=0.015  Score=28.94  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=18.2

Q ss_pred             cccCCCCCCcCcChHHHHhhhhh
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKI   35 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~   35 (305)
                      ...|+.||+.| ....|..|+..
T Consensus         2 l~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    2 LVPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CCcCCCCCCEE-CHHHHHHHHHh
Confidence            35799999999 67889999754

>KOG4173|consensus

Probab=95.21  E-value=0.023  Score=43.76  Aligned_cols=80  Identities=21%  Similarity=0.519  Sum_probs=55.0

Q ss_pred             ccccCC--CCccchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHH-h---------CCCCCccCc
Q psy4409         140 RIYCTF--CRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRK-H---------TKDKPYECG  207 (305)
Q Consensus       140 ~~~C~~--C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h---------~~~~~~~C~  207 (305)
                      .+.|++  |. .++.+......|...-++.         .|..|.+.|.+.-.|..|+.- |         .|..-|+|-
T Consensus        79 ~~~cqvagc~-~~~d~lD~~E~hY~~~h~~---------sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~Cl  148 (253)
T KOG4173|consen   79 AFACQVAGCC-QVFDALDDYEHHYHTLHGN---------SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCL  148 (253)
T ss_pred             cccccccchH-HHHhhhhhHHHhhhhcccc---------hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHH
Confidence            445544  44 5555555566666554444         577777788777777777542 2         344458996


Q ss_pred             c--chhhcCChHHHHHHHHhcCCc
Q psy4409         208 F--CSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       208 ~--C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      +  |+..|.+...-..|+...|..
T Consensus       149 vEgCt~KFkT~r~RkdH~I~~Hk~  172 (253)
T KOG4173|consen  149 VEGCTEKFKTSRDRKDHMIRMHKY  172 (253)
T ss_pred             HHhhhhhhhhhhhhhhHHHHhccC
Confidence            6  999999999999999887764

>KOG2893|consensus

Probab=95.05  E-value=0.006  Score=47.95  Aligned_cols=43  Identities=26%  Similarity=0.512  Sum_probs=33.5

Q ss_pred             ccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCCCcHHHHH
Q psy4409          14 YTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRR   93 (305)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~   93 (305)
                      =+|.+|++.|....-|..|++..|                                      |+|.+|.+.+-+--.|..
T Consensus        11 pwcwycnrefddekiliqhqkakh--------------------------------------fkchichkkl~sgpglsi   52 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKAKH--------------------------------------FKCHICHKKLFSGPGLSI   52 (341)
T ss_pred             ceeeecccccchhhhhhhhhhhcc--------------------------------------ceeeeehhhhccCCCcee
Confidence            469999999999888888875544                                      888899877666666666


Q ss_pred             H
Q psy4409          94 H   94 (305)
Q Consensus        94 H   94 (305)
                      |
T Consensus        53 h   53 (341)
T KOG2893|consen   53 H   53 (341)
T ss_pred             e
Confidence            6

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.03  E-value=0.018  Score=28.63  Aligned_cols=19  Identities=42%  Similarity=0.845  Sum_probs=12.0

Q ss_pred             cCccchhhcCChHHHHHHHH
Q psy4409         205 ECGFCSLKFSRRDNLRRHLK  224 (305)
Q Consensus       205 ~C~~C~~~f~~~~~l~~H~~  224 (305)
                      +|++||+.| ....|..|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            566666666 5566666654

>KOG2893|consensus

Probab=94.82  E-value=0.008  Score=47.28  Aligned_cols=25  Identities=16%  Similarity=0.467  Sum_probs=11.6

Q ss_pred             CCcccCCCcccccCcHHHHHH-HHHh
Q psy4409         174 YRYVCMVCPYHCRQNESMKRH-LRKH  198 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H-~~~h  198 (305)
                      +.|+|.+|.+.+.+-..|..| |++|
T Consensus        33 khfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   33 KHFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             ccceeeeehhhhccCCCceeehhhhh
Confidence            444555555444444444444 4443

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.78  E-value=0.011  Score=49.23  Aligned_cols=133  Identities=20%  Similarity=0.413  Sum_probs=86.6

Q ss_pred             eeCCc--CcccccChHHHHHHHHHhcCccccccccCcCccccCCCC--ccch------hcHHHHHHHHhhhcCccccCCC
Q psy4409         104 FKCNF--CFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCR--DPLY------NDLKILLQHTKNCKGAFRENDS  173 (305)
Q Consensus       104 ~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~--~~~~------~~~~~l~~h~~~~~~~~~~~~~  173 (305)
                      |.|+.  |..+......|..|.+..|.           .+-|.+|-  ++.|      .+...|..|...-..+ ..-. 
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~-----------~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e-~GFK-  218 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHG-----------FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEE-EGFK-  218 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcC-----------cEEhHhhhcCcccCccceeeeecccccccccCCccc-cCcC-
Confidence            78876  77777777788999888765           45566663  1122      2234455554321111 0000 


Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchh-------hcCChHHHHHHHHhcCCccccCCC--CCCCCCCce
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSL-------KFSRRDNLRRHLKDQHSYDSFRSS--TKKPGKYGV  244 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~-------~f~~~~~l~~H~~~hh~~~~~~c~--~c~~~~~~~  244 (305)
                      .--.|..|...|-.-..|..|++.-+.    .|-+|.+       -|.+..+|..|.+.-|    |.|.  .|-.++...
T Consensus       219 GHP~C~FC~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~v  290 (493)
T COG5236         219 GHPLCIFCKIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYV  290 (493)
T ss_pred             CCchhhhccceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEE
Confidence            123799999999999999999987442    5666654       4888889999987543    5554  355577777


Q ss_pred             eeecCCcccccee
Q psy4409         245 LIVKGSNISTMRV  257 (305)
Q Consensus       245 ~~~~~~~~~h~~~  257 (305)
                      |.....|+.|+..
T Consensus       291 f~~~~el~~h~~~  303 (493)
T COG5236         291 FPYHTELLEHLTR  303 (493)
T ss_pred             eccHHHHHHHHHH
Confidence            8888888888753

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.63  E-value=0.025  Score=30.65  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=21.4

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhh
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKI   35 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~   35 (305)
                      .+|.|.+|++.|.+...+..|++.
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHCh
Confidence            368999999999999999999855

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=94.16  E-value=0.018  Score=34.09  Aligned_cols=35  Identities=20%  Similarity=0.239  Sum_probs=30.0

Q ss_pred             ccccCCCcccCCCCCCcCcChHHHHhhhhhccccc
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      +...|+-.+.||-|+..|.....+..|+..-|+..
T Consensus        10 ~~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~~   44 (65)
T COG4049          10 RDRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGWL   44 (65)
T ss_pred             eccCCceeeeCCchhHHHHHhHHHHHHhhHHhhhh
Confidence            44568889999999999999999999998777654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.82  E-value=0.042  Score=29.75  Aligned_cols=22  Identities=27%  Similarity=0.727  Sum_probs=17.3

Q ss_pred             CccCccchhhcCChHHHHHHHH
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLK  224 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~  224 (305)
                      +|.|.+|+..|.+...+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4778888888888888888875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.79  E-value=0.032  Score=33.09  Aligned_cols=30  Identities=27%  Similarity=0.618  Sum_probs=21.5

Q ss_pred             CCCCCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         199 TKDKPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       199 ~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      .|+-.+.||.|+..|.......+|....|+
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            345567777777777777777777776665

>KOG2785|consensus

Probab=93.75  E-value=0.11  Score=44.32  Aligned_cols=52  Identities=29%  Similarity=0.509  Sum_probs=41.9

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCC-----------------------CeeCCcCc---ccccChHHHHHHHHHh
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEK-----------------------PFKCNFCF---QCFTQNVSLQTHIRIK  126 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-----------------------~~~C~~C~---~~f~~~~~l~~H~~~~  126 (305)
                      |-.|-.|++.|.+...-..||..++|-.                       -|.|-.|+   +.|.+....+.||...
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K  243 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDK  243 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhc
Confidence            3778889999999999999998777632                       16788888   8888888888998763

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=92.93  E-value=0.18  Score=35.60  Aligned_cols=25  Identities=24%  Similarity=0.743  Sum_probs=23.2

Q ss_pred             ccC----ccchhhcCChHHHHHHHHhcCC
Q psy4409         204 YEC----GFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       204 ~~C----~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      |.|    +.|+..+.+...+++|++.+|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            899    9999999999999999998885

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=92.86  E-value=0.059  Score=28.87  Aligned_cols=9  Identities=33%  Similarity=1.158  Sum_probs=4.6

Q ss_pred             CCccCccch
Q psy4409         202 KPYECGFCS  210 (305)
Q Consensus       202 ~~~~C~~C~  210 (305)
                      .++.||.|+
T Consensus        16 ~~~~CP~Cg   24 (33)
T cd00350          16 APWVCPVCG   24 (33)
T ss_pred             CCCcCcCCC
Confidence            445555554

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=92.60  E-value=0.57  Score=33.07  Aligned_cols=25  Identities=36%  Similarity=0.776  Sum_probs=22.6

Q ss_pred             ccc----CCCcccccCcHHHHHHHHHhCC
Q psy4409         176 YVC----MVCPYHCRQNESMKRHLRKHTK  200 (305)
Q Consensus       176 ~~C----~~C~~~f~~~~~l~~H~~~h~~  200 (305)
                      |.|    ..|+..+.+...+..|++.++|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            889    9999999999999999988664

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=91.94  E-value=0.029  Score=50.18  Aligned_cols=152  Identities=21%  Similarity=0.309  Sum_probs=97.6

Q ss_pred             CcccCCCCccCCCcHHHHHHHH--hhCCC--CCeeCC--cCcccccChHHHHHHHHHhcCccccccccCcCccccCC--C
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIR--RHTGE--KPFKCN--FCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTF--C  146 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~--C  146 (305)
                      .+.|..|...|.....|..|..  .|.++  +++.|+  .|++.|.....+..|...+....         .+.+..  +
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~  359 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSIS---------PAKEKLLNS  359 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCC---------ccccccccC
Confidence            5899999999999999999999  89999  999999  79999999999999998843321         122211  1


Q ss_pred             CccchhcHHHHHHHHhhhcCccccCCCCCcccCC--CcccccCcHHHHHHHHHhCCCC--CccCccchhhcCChHHHHHH
Q psy4409         147 RDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMV--CPYHCRQNESMKRHLRKHTKDK--PYECGFCSLKFSRRDNLRRH  222 (305)
Q Consensus       147 ~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H  222 (305)
                      . ..+.....-..+....... .......+.+..  |...+.....+..|...|....  .+.+..|.+.|.....+..|
T Consensus       360 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (467)
T COG5048         360 S-SKFSPLLNNEPPQSLQQYK-DLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPH  437 (467)
T ss_pred             c-cccccccCCCCccchhhcc-CccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccc
Confidence            1 1111100000000000000 000112233332  6666677777777776666655  46677899999999999999


Q ss_pred             HHhcCCccccCCCCC
Q psy4409         223 LKDQHSYDSFRSSTK  237 (305)
Q Consensus       223 ~~~hh~~~~~~c~~c  237 (305)
                      ++.+....++-|..+
T Consensus       438 ~~~~~~~~~~~~~~~  452 (467)
T COG5048         438 KKIHTNHAPLLCSIL  452 (467)
T ss_pred             ccccccCCceeeccc
Confidence            888887776666554

>KOG4173|consensus

Probab=91.30  E-value=0.07  Score=41.17  Aligned_cols=54  Identities=22%  Similarity=0.459  Sum_probs=32.9

Q ss_pred             cccCCCCccCCCcHHHHHHHHh-h---------CCCCCeeCCc--CcccccChHHHHHHHHHhcCc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRR-H---------TGEKPFKCNF--CFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~-h---------~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      -.|..|.+.|.+.-.|..|+.. |         -|...|.|-+  |+..|.+...-..|+-..|..
T Consensus       107 ~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk~  172 (253)
T KOG4173|consen  107 NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHKY  172 (253)
T ss_pred             chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhccC
Confidence            4566677777766666666642 2         1334466644  777777776666776665543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=88.75  E-value=0.19  Score=44.88  Aligned_cols=66  Identities=27%  Similarity=0.546  Sum_probs=59.8

Q ss_pred             CCcccCCCcccccCcHHHHHHHH--HhCCC--CCccCc--cchhhcCChHHHHHHHHhcCCccccCCCCCCC
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLR--KHTKD--KPYECG--FCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKP  239 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c~~  239 (305)
                      .++.|..|...|.....|..|.+  .|.++  +++.|+  .|++.|.....+..|...|.+..++.+.....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNS  359 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccC
Confidence            36899999999999999999999  89999  999999  79999999999999999999988877776544

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=88.39  E-value=0.33  Score=34.06  Aligned_cols=30  Identities=20%  Similarity=0.467  Sum_probs=22.1

Q ss_pred             cccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCCh
Q psy4409         176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRR  216 (305)
Q Consensus       176 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  216 (305)
                      ..|+.||..|...           +..|..||+||..|.-.
T Consensus        10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence            4788888888653           34677888888888654

The function of members of this family is unknown.

>TIGR00622 ssl1 transcription factor ssl1

Probab=88.22  E-value=0.66  Score=32.58  Aligned_cols=48  Identities=15%  Similarity=0.237  Sum_probs=27.1

Q ss_pred             ccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhc
Q psy4409         177 VCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       177 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      .|--|...|........  ..-.....|+|+.|...|----++..|...|
T Consensus        57 ~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             cccCcCCCCCCcccccc--cccccccceeCCCCCCccccccchhhhhhcc
Confidence            47777777765431110  0011234577777777777766777776544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=87.99  E-value=0.34  Score=34.02  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=19.3

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccCh
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN  116 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  116 (305)
                      ..|+.||+.|-..           +..|..|++||..|.-.
T Consensus        10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence            6677777776432           23566777777776554

The function of members of this family is unknown.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=87.50  E-value=0.53  Score=25.89  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCccccc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFT  114 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  114 (305)
                      ..|+.|+..|.-..+-     .-.+....+|+.|+..|.
T Consensus         3 i~CP~C~~~f~v~~~~-----l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDK-----LPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHH-----cccCCcEEECCCCCcEee
Confidence            5677787777655441     223344677777777663

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=87.31  E-value=0.46  Score=26.20  Aligned_cols=34  Identities=12%  Similarity=0.221  Sum_probs=20.0

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCccccc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFT  114 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  114 (305)
                      +.|+.|+..|.-..+..     ......+.|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~-----~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQL-----GANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHc-----CCCCCEEECCCCCCEEE
Confidence            67778877776554421     11122467777777663

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=86.94  E-value=0.61  Score=25.48  Aligned_cols=33  Identities=18%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCF  113 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  113 (305)
                      ..|+.|+..|.-..+.     +-......+|+.|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~-----ip~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK-----IPPKGRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHH-----CCCCCcEEECCCCCCEe
Confidence            5677777777655542     22233457777777766

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=86.32  E-value=0.4  Score=25.80  Aligned_cols=7  Identities=29%  Similarity=1.013  Sum_probs=3.2

Q ss_pred             ccCccch
Q psy4409         204 YECGFCS  210 (305)
Q Consensus       204 ~~C~~C~  210 (305)
                      ..||+|+
T Consensus        19 ~~CP~Cg   25 (34)
T cd00729          19 EKCPICG   25 (34)
T ss_pred             CcCcCCC
Confidence            3444444

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2186|consensus

Probab=85.86  E-value=0.53  Score=37.81  Aligned_cols=46  Identities=30%  Similarity=0.618  Sum_probs=36.6

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHH
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR  124 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  124 (305)
                      |.|..||....- ..+..|+...++ .-|.|-.|++.|.. ..+..|..
T Consensus         4 FtCnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            899999988765 456669988777 67999999999988 55666754

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=85.50  E-value=0.62  Score=23.35  Aligned_cols=11  Identities=27%  Similarity=0.691  Sum_probs=7.1

Q ss_pred             cccCCCccccc
Q psy4409         176 YVCMVCPYHCR  186 (305)
Q Consensus       176 ~~C~~C~~~f~  186 (305)
                      -.|+.||..|.
T Consensus        15 ~~Cp~CG~~F~   25 (26)
T PF10571_consen   15 KFCPHCGYDFE   25 (26)
T ss_pred             CcCCCCCCCCc
Confidence            35777777664

Several members are annotated as putative helicases.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.87  E-value=0.16  Score=40.68  Aligned_cols=43  Identities=16%  Similarity=0.401  Sum_probs=27.8

Q ss_pred             CCcccCCCcccccCcHHHHHHHHH-h---------CCCCC-----ccCccchhhcCCh
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRK-H---------TKDKP-----YECGFCSLKFSRR  216 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~-h---------~~~~~-----~~C~~C~~~f~~~  216 (305)
                      +.+.||+|+..|.+...+....++ .         .+..|     ..||.||.+|...
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            557888888888876555444432 1         11222     5799999887654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.42  E-value=0.25  Score=39.59  Aligned_cols=25  Identities=16%  Similarity=0.370  Sum_probs=19.0

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhh
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKI   35 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~   35 (305)
                      ++.+.||+|+..|.+..-.....+.
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~   27 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRV   27 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceE
Confidence            4678999999999987655555543

>KOG1280|consensus

Probab=84.19  E-value=0.67  Score=39.03  Aligned_cols=36  Identities=17%  Similarity=0.307  Sum_probs=25.9

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCCcccc--CCCCCC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHSYDSF--RSSTKK  238 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~--~c~~c~  238 (305)
                      -|.|++|+..=.+...|..|....|.+.++  .|++|.
T Consensus        79 SftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~  116 (381)
T KOG1280|consen   79 SFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA  116 (381)
T ss_pred             cccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence            478888887766777888888888877653  355554

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=83.83  E-value=0.85  Score=26.20  Aligned_cols=27  Identities=15%  Similarity=0.401  Sum_probs=18.6

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCF  113 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  113 (305)
                      |.|..||..|...           ...+..|+.||..-
T Consensus         3 Y~C~~Cg~~~~~~-----------~~~~irC~~CG~rI   29 (44)
T smart00659        3 YICGECGRENEIK-----------SKDVVRCRECGYRI   29 (44)
T ss_pred             EECCCCCCEeecC-----------CCCceECCCCCceE
Confidence            8888888877643           23567788887654

present in RNA polymerase I, II and III

>TIGR00622 ssl1 transcription factor ssl1

Probab=83.06  E-value=2.5  Score=29.78  Aligned_cols=48  Identities=15%  Similarity=0.334  Sum_probs=30.5

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHH
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI  125 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (305)
                      ..|--|...|.......  ...-.....|.|+.|...|-..-.+..|...
T Consensus        56 ~~C~~C~~~f~~~~~~~--~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~L  103 (112)
T TIGR00622        56 RFCFGCQGPFPKPPVSP--FDELKDSHRYVCAVCKNVFCVDCDVFVHESL  103 (112)
T ss_pred             CcccCcCCCCCCccccc--ccccccccceeCCCCCCccccccchhhhhhc
Confidence            45888888887543111  0001223468888888888888777888777

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=83.00  E-value=0.74  Score=34.98  Aligned_cols=24  Identities=33%  Similarity=0.830  Sum_probs=17.5

Q ss_pred             CcccCCCcccccCcHHHHHHHHHhCCCCCccCccchh
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSL  211 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  211 (305)
                      -|.|++||..+             -++.|-+||+||.
T Consensus       134 ~~vC~vCGy~~-------------~ge~P~~CPiCga  157 (166)
T COG1592         134 VWVCPVCGYTH-------------EGEAPEVCPICGA  157 (166)
T ss_pred             EEEcCCCCCcc-------------cCCCCCcCCCCCC
Confidence            57888887654             3467788888883

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=82.46  E-value=0.61  Score=27.07  Aligned_cols=29  Identities=14%  Similarity=0.384  Sum_probs=19.7

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCccccc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFT  114 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  114 (305)
                      |.|+.||..|.....          ...+.|+.||..+.
T Consensus         4 y~C~~CG~~~~~~~~----------~~~~~Cp~CG~~~~   32 (46)
T PRK00398          4 YKCARCGREVELDEY----------GTGVRCPYCGYRIL   32 (46)
T ss_pred             EECCCCCCEEEECCC----------CCceECCCCCCeEE
Confidence            888888887654222          12578888887654

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=82.37  E-value=0.82  Score=27.79  Aligned_cols=32  Identities=16%  Similarity=0.245  Sum_probs=19.3

Q ss_pred             CCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCC
Q psy4409         102 KPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCR  147 (305)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~  147 (305)
                      ..|.|+.||..-..+..--+-    +..          +|.|+.||
T Consensus        26 v~F~CPnCGe~~I~Rc~~CRk----~g~----------~Y~Cp~CG   57 (61)
T COG2888          26 VKFPCPNCGEVEIYRCAKCRK----LGN----------PYRCPKCG   57 (61)
T ss_pred             eEeeCCCCCceeeehhhhHHH----cCC----------ceECCCcC
Confidence            357888888666555433221    222          78888887

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=81.00  E-value=1.1  Score=32.15  Aligned_cols=30  Identities=10%  Similarity=0.178  Sum_probs=22.9

Q ss_pred             cccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCCh
Q psy4409         176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRR  216 (305)
Q Consensus       176 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  216 (305)
                      ..|+.||..|...           +..|..||+||..|.-.
T Consensus        10 r~Cp~cg~kFYDL-----------nk~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDL-----------NRRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCcccccc-----------CCCCccCCCcCCccCcc
Confidence            4799999888652           34678999999888655

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=80.86  E-value=1.4  Score=22.00  Aligned_cols=20  Identities=30%  Similarity=0.463  Sum_probs=15.7

Q ss_pred             ccCCCCCCcCcChHHHHhhhh
Q psy4409          14 YTCYFCNFKSAHMSSINNHLK   34 (305)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~   34 (305)
                      ..||+|++.+ ....+..|+-
T Consensus         2 v~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        2 VQCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             CcCCCCcCcc-cHHHHHHHHH
Confidence            4699999998 5677778873

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		3e-10
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		5e-08
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		6e-07
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		3e-05
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		8e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		6e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		8e-04
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-05
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		8e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-05
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		8e-04
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		1e-05
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-05
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		9e-04
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		4e-05
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		5e-04
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-05
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		5e-05
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		3e-04
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		5e-05
1bbo_A	57	High-Resolution Solution Structure Of The Double Cy		5e-05
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		5e-05
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-04
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		5e-05
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-05
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		7e-04
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		7e-05
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		7e-04
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-04
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		3e-04
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		5e-04
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		6e-04
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		8e-04
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		8e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
           + C  C        D+ RH R HTGEKP+KC  C + F+Q  +L+ H R  HT   G+  
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HT---GEKP 105
Query: 136 QESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHL 195
                  C  C    ++ L  L  H +   G         Y C  C     + +++  H 
Sbjct: 106 -----YACPECGK-SFSQLAHLRAHQRTHTG------EKPYKCPECGKSFSREDNLHTHQ 153
Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRH 222
           R HT +KPY+C  C   FSRRD L  H
Sbjct: 154 RTHTGEKPYKCPECGKSFSRRDALNVH 180

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
           +VC VC     + E +KRH R HT +KPY CG C+  F+RRD L RH +  HS
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 31/123 (25%)
Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           ++ H RKH+GEKP+ C  C                             K    +E+L++H
Sbjct: 23  LKVHNRKHTGEKPFECPKCG----------------------------KCYFRKENLLEH 54
Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
             R        +   FTC VC     R +++R H+  HTGE P+KC+ C Q F Q   LQ
Sbjct: 55  EARNCMNRSEQV---FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQ 111
Query: 121 THI 123
           +H+
Sbjct: 112 SHM 114

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 41/141 (29%)
Query: 91  MRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPL 150
           ++ H R+HTGEKPF+C  C +C+ +  +L  H                            
Sbjct: 23  LKVHNRKHTGEKPFECPKCGKCYFRKENLLEH---------------------------- 54
Query: 151 YNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCS 210
                      +NC           + C VC    R+   ++ H+  HT + PY+C  CS
Sbjct: 55  ---------EARNC----MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCS 101
Query: 211 LKFSRRDNLRRHLKDQHSYDS 231
            +F ++ +L+ H+   HS  S
Sbjct: 102 QQFMQKKDLQSHMIKLHSGPS 122

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73  QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           Q  F C +C  +  RS  +  HIR HTGEKPF C+ C + F ++   + H +I
Sbjct: 32  QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           + C +C  +  +++ +  H+R HT +KP+ C  C  KF+R D  +RH K
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73  QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           Q  F C +C  +  RS  +  HIR HTGEKPF C+ C + F ++   + H +I
Sbjct: 32  QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           + C +C  +  +++ +  H+R HT +KP+ C  C  KF+R D  +RH K
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73  QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           Q  F C +C  +  RS  +  HIR HTGEKPF C+ C + F ++   + H +I
Sbjct: 32  QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           + C +C  +  +++ +  H+R HT +KP+ C  C  KF+R D  +RH K
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73  QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           Q  F C +C  +  RS  +  HIR HTGEKPF C+ C + F ++   + H +I
Sbjct: 31  QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           + C +C  +  +++ +  H+R HT +KP+ C  C  KF+R D  +RH K
Sbjct: 34  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 76  FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
           + C V  CD    RS ++ RHIR HTG+KPF+C  C + F+++  L THIR
Sbjct: 20  YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73  QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           Q  F C +C  +  RS  +  HIR HTGEKPF C+ C + F ++   + H +I
Sbjct: 32  QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           + C +C  +  +++ +  H+R HT +KP+ C  C  KF+R D  +RH K
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 34/101 (33%)
Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           ++ H+R H+G KPY C  C++ +A  SS+N HL+I   E                     
Sbjct: 24  LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE--------------------- 62
Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGE 101
                   RP     F C +C Y S  S  +  H+R HTG+
Sbjct: 63  --------RP-----FKCQICPYASRNSSQLTVHLRSHTGD 90

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 42/124 (33%), Gaps = 44/124 (35%)
Query: 78  CLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQE 137
           C VC     R   ++ H+R HTG KP+KC  C      + SL  H+RI            
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI------------ 58
Query: 138 STRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRK 197
                                            +D   + C +CPY  R +  +  HLR 
Sbjct: 59  --------------------------------HSDERPFKCQICPYASRNSSQLTVHLRS 86
Query: 198 HTKD 201
           HT D
Sbjct: 87  HTGD 90

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 76  FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
           + C V  CD    +  ++  HIR HTG+KPF+C  C + F+Q  SL  HIR
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR 55

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
           F C +C  +  RS  +  HIR HTGEKPF C+ C + F ++   + H  I+H     +DK
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 136 QE 137
            E
Sbjct: 64  VE 65

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
           + C +C  +  +++ +  H+R HT +KP+ C  C  KF+R D  +RH   QH
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           Y+     C +   +++ + RH RKHT  KP++CG C+  FSR D+L  H+K
Sbjct: 46  YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96

>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2 Zinc Finger From The Human Enhancer Binding Protein Mbp-1 Length = 57

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQ 226
           +Y+C  C    ++   +K+H+R HT  +PY C +C+  F  + NL +H+K +
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 72  IQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           ++  + C  C     +S ++++H R HTGEKP+KC  C + F+Q+  LQ H R 
Sbjct: 1   MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 44/122 (36%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQH 160
           EKP+KC  C + F+Q+ +LQ H R                                   H
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRT----------------------------------H 27
Query: 161 TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLR 220
           T              Y C  C     Q+  +++H R HT +KPY+C  C   FSR D+L 
Sbjct: 28  T----------GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLS 77
Query: 221 RH 222
           RH
Sbjct: 78  RH 79

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           + C+ C     RS  + +H R HTGEKP+KC  C + F+QN  L  H RI
Sbjct: 15  YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73  QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           Q  F C +C  +  RS  +  HIR HTGEKPF C+ C + F ++   + H +I
Sbjct: 32  QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           + C +C  +  +++ +  H+R HT +KP+ C  C  KF+R D  +RH K
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73  QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           Q  F C +C  +  RS  +  HIR HTGEKPF C+ C + F ++   + H +I
Sbjct: 32  QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           + C +C  +  +++ +  H+R HT +KP+ C  C  KF+R D  +RH K
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 76  FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
           + C V  CD    +  ++  HIR HTG+KPF+C  C + F+Q+  L  HIR
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 178 CMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
           C  C    R N  +  HLR HT +KPY+C FC    +++ +LR HL+  H
Sbjct: 7   CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           + C  C      S D+ +H R HTGEKP+KC+ C + F Q   L  H R+
Sbjct: 19  YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           + C  C     +  DM++H   HTGEKP KC  C + F+Q+ +L TH R KHT
Sbjct: 30  YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR-KHT 81

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHL 223
           Y C VC    +    +  H++ HT  KPYEC  C+ +F  RD+  RH+
Sbjct: 38  YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 81  CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           C+    RS  ++RH RRHTG KPF+C  C + F+++  L+TH R 
Sbjct: 44  CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-14
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-12
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-13
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-10
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-13
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-10
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-12
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-12
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-10
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-09
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-11
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-09
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-11
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	4e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	8e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-08
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-07
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	8e-11
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-10
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	7e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-10
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-09
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-09
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-06
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-09
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	9e-09
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-06
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-08
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	9e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	6e-06
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-08
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	5e-08
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-08
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-08
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-08
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-08
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-04
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-08
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-08
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	2e-08
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-08
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-08
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-08
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-08
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-08
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-08
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-08
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-08
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-05
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-08
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	6e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-08
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-08
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-07
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	6e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	7e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-08
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-08
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	6e-08
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-04
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-08
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-08
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-04
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	7e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	7e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-06
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-08
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	8e-08
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-05
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	8e-08
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-08
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	9e-08
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-07
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-07
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-07
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-04
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-07
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	3e-04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-07
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-07
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-07
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	8e-04
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-07
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-07
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-04
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	2e-07
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	4e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-07
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-07
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-07
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	2e-07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	6e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-07
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	2e-07
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	5e-06
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	6e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	5e-04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-07
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-07
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-07
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-07
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	3e-07
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	8e-04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	9e-07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	8e-05
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-07
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-07
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-07
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-07
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-07
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-04
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-07
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-07
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-04
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	6e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	8e-04
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-07
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	9e-07
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-06
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	6e-04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-06
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	2e-06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-06
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	3e-06
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-06
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-06
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	8e-06
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	1e-05
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	1e-05
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	1e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	8e-05
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	2e-05
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	4e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	1e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	3e-04
1paa_A	30	Yeast transcription factor ADR1; transcription reg	6e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	8e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 59/228 (25%), Positives = 82/228 (35%), Gaps = 64/228 (28%)

Query: 2   RRHLRKHSGEKPYTCYFCNFKS-AHMSSINNHLKIKHLEK----IQCRYSILKLQSHEES 56
                   GEKPY C  C  KS +    +  H +    EK     +C     K  S ++ 
Sbjct: 10  VAQAALEPGEKPYACPECG-KSFSRSDHLAEHQRTHTGEKPYKCPECG----KSFSDKKD 64

Query: 57  LVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN 116
           L +H +R     +P     + C  C     +  ++R H R HTGEKP+ C  C + F+Q 
Sbjct: 65  LTRH-QRTHTGEKP-----YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL 118

Query: 117 VSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHT--KNCKGAFRENDSY 174
             L+ H R                                   HT  K            
Sbjct: 119 AHLRAHQRT----------------------------------HTGEK------------ 132

Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
            Y C  C     + +++  H R HT +KPY+C  C   FSRRD L  H
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 33/154 (21%), Positives = 46/154 (29%), Gaps = 52/154 (33%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFC 146
            S           GEKP+ C  C + F+++  L  H R                      
Sbjct: 5   GSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT--------------------- 43

Query: 147 RDPLYNDLKILLQHT-------KNCKGAFRENDSYR-----------YVCMVCPYHCRQN 188
                        HT         C  +F +                Y C  C     Q 
Sbjct: 44  -------------HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR 90

Query: 189 ESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
            +++ H R HT +KPY C  C   FS+  +LR H
Sbjct: 91  ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 60.1 bits (147), Expect = 4e-11
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 17/132 (12%)

Query: 2   RRHLRKHSGEKPYTCYFCNFKS-AHMSSINNHLKIKHLEK----IQCRYSILKLQSHEES 56
            RH R H+GEKPY C  C  KS +  +++  H +    EK     +C     K  S    
Sbjct: 66  TRHQRTHTGEKPYKCPECG-KSFSQRANLRAHQRTHTGEKPYACPECG----KSFSQLAH 120

Query: 57  LVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN 116
           L  H +R     +P     + C  C     R  ++  H R HTGEKP+KC  C + F++ 
Sbjct: 121 LRAH-QRTHTGEKP-----YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174

Query: 117 VSLQTHIRIKHT 128
            +L  H R  HT
Sbjct: 175 DALNVHQRT-HT 185

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 50/208 (24%), Positives = 70/208 (33%), Gaps = 62/208 (29%)

Query: 2   RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK----IQCRYSILKLQSHEESL 57
             H R H+GEKPY C  C    +    +  H +    EK     +C     K  S   +L
Sbjct: 38  AEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECG----KSFSQRANL 93

Query: 58  VQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNV 117
             H +R     +P     + C  C     +   +R H R HTGEKP+KC  C + F++  
Sbjct: 94  RAH-QRTHTGEKP-----YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRED 147

Query: 118 SLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHT--KNCKGAFRENDSYR 175
           +L TH R                                   HT  K             
Sbjct: 148 NLHTHQRT----------------------------------HTGEK------------P 161

Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKP 203
           Y C  C     + +++  H R HT  K 
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTHTGKKT 189

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 186 RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
             + S          +KPY C  C   FSR D+L  H
Sbjct: 4   FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 28/128 (21%)

Query: 3   RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAK 62
                   +       C+   + M  +  H+ ++H+               + + V + +
Sbjct: 15  SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG-----------PEQNNHVCYWE 63

Query: 63  RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQ 120
            C    +    F                +  HIR HTGEKPF C F  C + F ++ +L+
Sbjct: 64  ECPREGKS---FK-----------AKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLK 109

Query: 121 THIRIKHT 128
            H R  HT
Sbjct: 110 IHKRT-HT 116

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 33/145 (22%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYN 152
                   +       C + F+    L TH+ ++H     Q+        C       + 
Sbjct: 15  SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKS-FK 73

Query: 153 DLKILLQH-------------TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHT 199
               L+ H                C   F                  ++E++K H R HT
Sbjct: 74  AKYKLVNHIRVHTGEKPFPCPFPGCGKIF-----------------ARSENLKIHKRTHT 116

Query: 200 KDKPYECGF--CSLKFSRRDNLRRH 222
            +KP++C F  C  +F+   + ++H
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 30/130 (23%), Positives = 42/130 (32%), Gaps = 63/130 (48%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           +  H+R H+GEKP+ C F                        C     K+ +  E+L  H
Sbjct: 78  LVNHIRVHTGEKPFPCPFP----------------------GCG----KIFARSENLKIH 111

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVS 118
                                              R HTGEKPFKC F  C + F  +  
Sbjct: 112 ----------------------------------KRTHTGEKPFKCEFEGCDRRFANSSD 137

Query: 119 LQTHIRIKHT 128
            + H+ + HT
Sbjct: 138 RKKHMHV-HT 146

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 63.7 bits (156), Expect = 5e-13
 Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 52/142 (36%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCT 144
           +   ++ H R+HTGEKP++C+F  C + F+++  L+ H R                    
Sbjct: 20  KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR------------------- 60

Query: 145 FCRDPLYNDLKILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDK 202
                          HT  K             + C  C     +++ +K H R HT +K
Sbjct: 61  ---------------HTGVK------------PFQCKTCQRKFSRSDHLKTHTRTHTGEK 93

Query: 203 PYECGF--CSLKFSRRDNLRRH 222
           P+ C +  C  KF+R D L RH
Sbjct: 94  PFSCRWPSCQKKFARSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 38/128 (29%)

Query: 2   RRHLRKHSGEKPYTCYF--CNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQ 59
           + H RKH+GEKPY C F  C  + +    +  H +     K                   
Sbjct: 25  QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK------------------- 65

Query: 60  HAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNV 117
                     P     F C  C     RS  ++ H R HTGEKPF C +  C + F ++ 
Sbjct: 66  ----------P-----FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110

Query: 118 SLQTHIRI 125
            L  H  +
Sbjct: 111 ELVRHHNM 118

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 11/52 (21%)

Query: 182 PYHC---------RQNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRH 222
           P+ C          +   ++ H RKHT +KPY+C F  C  +FSR D L+RH
Sbjct: 6   PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 62.5 bits (153), Expect = 1e-12
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 45/149 (30%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
             C  C         ++ H R+HTGEKPF+C  C +C+ +  +L  H             
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM------- 60

Query: 136 QESTRIYCTFCRDPLYNDLKILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKR 193
                                   +   +             + C VC    R+   ++ 
Sbjct: 61  ------------------------NRSEQV------------FTCSVCQETFRRRMELRL 84

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
           H+  HT + PY+C  CS +F ++ +L+ H
Sbjct: 85  HMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 40/125 (32%)

Query: 8   HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK----IQCRYSILKLQSHEESLVQHAKR 63
            SG     C  C+ K      +  H +    EK     +C     K    +E+L++H   
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCG----KCYFRKENLLEH--- 54

Query: 64  CSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHI 123
                                             +  E+ F C+ C + F + + L+ H+
Sbjct: 55  ----------------------------EARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86

Query: 124 RIKHT 128
              HT
Sbjct: 87  VS-HT 90

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
              C            +K H RKHT +KP+EC  C   + R++NL  H
Sbjct: 7   GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 60.2 bits (147), Expect = 3e-12
 Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 43/114 (37%)

Query: 92  RRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLY 151
               R H+GEKP++C  C   FTQ+ +++ HI  KHT        E+             
Sbjct: 4   GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT--------ENVA----------- 44

Query: 152 NDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRK-HTKDKPY 204
                                  ++ C  C     +   +  HLRK H+   P 
Sbjct: 45  -----------------------KFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGE--KPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           + C +C     +S  M+ HI +   E    F C  C     +   L  H+R +H+
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 176 YVCMVCPYHCRQNESMKRHLRKHT--KDKPYECGFCSLKFSRRDNLRRHLKDQHSYD 230
           Y C +C     Q+ +MK H+ +        + C  C    +R+ +L  HL+ QHSY 
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 33/104 (31%)

Query: 2   RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
               R HSGEKPY CY C+ +     ++  H+  KH E                      
Sbjct: 4   GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN--------------------- 42

Query: 62  KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRR-HTGEKPF 104
                         F C  CD    R  D+  H+R+ H+   P 
Sbjct: 43  ------VAK-----FHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 190 SMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
           S     R H+ +KPYEC  C  +F++   ++ H
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMH 34

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 59.0 bits (144), Expect = 1e-11
 Identities = 27/127 (21%), Positives = 40/127 (31%), Gaps = 48/127 (37%)

Query: 98  HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKIL 157
                P KC  C +CF++   L+TH+R                                 
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRC-------------------------------- 30

Query: 158 LQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSR 215
             HT  K             Y C  C Y    + S+ +HLR H+ ++P++C  C      
Sbjct: 31  --HTGVK------------PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN 76

Query: 216 RDNLRRH 222
              L  H
Sbjct: 77  SSQLTVH 83

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 57.4 bits (140), Expect = 4e-11
 Identities = 32/134 (23%), Positives = 44/134 (32%), Gaps = 48/134 (35%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
             C VC     R   ++ H+R HTG KP+KC  C      + SL  H+RI          
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI---------- 58

Query: 136 QESTRIYCTFCRDPLYNDLKILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKR 193
                                   H+  +             + C +CPY  R +  +  
Sbjct: 59  ------------------------HSDERP------------FKCQICPYASRNSSQLTV 82

Query: 194 HLRKHTKDKPYECG 207
           HLR HT D     G
Sbjct: 83  HLRSHTGDSGPSSG 96

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 53.6 bits (130), Expect = 1e-09
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 35/121 (28%)

Query: 8   HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYV 67
                P+ C  C    +    +  H++     K                           
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK--------------------------- 35

Query: 68  PRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
             P     + C  CDY +  S  + +H+R H+ E+PFKC  C      +  L  H+R  H
Sbjct: 36  --P-----YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS-H 87

Query: 128 T 128
           T
Sbjct: 88  T 88

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 43.6 bits (104), Expect = 4e-06
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 34/105 (32%)

Query: 2   RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
           + H+R H+G KPY C  C++ +A  SS+N HL+I   E+                     
Sbjct: 25  KTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER--------------------- 63

Query: 62  KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKC 106
                   P     F C +C Y S  S  +  H+R HTG+     
Sbjct: 64  --------P-----FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 58.6 bits (143), Expect = 3e-11
 Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 48/132 (36%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYN 152
                   +K F C FC + FT++ +L  H R                            
Sbjct: 7   GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT--------------------------- 39

Query: 153 DLKILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCS 210
                  HT  +             Y C +C    R+ + ++ H   H+K+KP++C  C 
Sbjct: 40  -------HTDER------------PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG 80

Query: 211 LKFSRRDNLRRH 222
             F +   L  H
Sbjct: 81  KGFCQSRTLAVH 92

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 52.4 bits (127), Expect = 4e-09
 Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 35/126 (27%)

Query: 3   RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAK 62
                   +K + C FC        ++  H +    E+                      
Sbjct: 7   GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDER---------------------- 44

Query: 63  RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTH 122
                  P     +TC +C     R   +R H   H+ EKPFKC  C + F Q+ +L  H
Sbjct: 45  -------P-----YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92

Query: 123 IRIKHT 128
             + H 
Sbjct: 93  KTL-HM 97

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 57.9 bits (141), Expect = 3e-11
 Identities = 20/118 (16%), Positives = 28/118 (23%), Gaps = 40/118 (33%)

Query: 92  RRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLY 151
               R HTGEKP+ C+ C + F Q   L  H +  +                        
Sbjct: 4   GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVPA-------------A-- 47

Query: 152 NDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC 209
                                   +VC  C     +  +M RH          E    
Sbjct: 48  ------------------------FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 22/112 (19%), Positives = 28/112 (25%), Gaps = 30/112 (26%)

Query: 2   RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
               R H+GEKPY C  C+        ++ H K  H                        
Sbjct: 4   GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN--------------------- 42

Query: 62  KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCF 113
               +VP       F C  C     R   M RH     G    +        
Sbjct: 43  ----FVPAA-----FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGE----KPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           + C  CD    +   +  H +R+         F C+ C + FT+  ++  H      
Sbjct: 16  YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CA 71

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 11/52 (21%)

Query: 182 PYHC-------RQNESMKRHLRKHT----KDKPYECGFCSLKFSRRDNLRRH 222
           PY C       RQ + +  H +++         + C  C   F+RR+ + RH
Sbjct: 15  PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 190 SMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           S     R HT +KPY C  C   F ++  L  H K
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK 36

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 57.1 bits (139), Expect = 3e-11
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
             C  C Y       +R H R H  ++PFKCN+C     Q  +L  H++    
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FH 61

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
             C  C Y C    +++ H R H  D+P++C +CS    +  NL +H+K
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 48/113 (42%)

Query: 96  RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLK 155
              +   P KC+ C    +   +L+ H RI                              
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERI------------------------------ 31

Query: 156 ILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
               H   +             + C  C +  +Q  ++ +H++K   D     
Sbjct: 32  ----HCTDRP------------FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 12/101 (11%), Positives = 31/101 (30%), Gaps = 34/101 (33%)

Query: 6   RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCS 65
              S   P  C  C++  +  +++  H +I   ++                         
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDR------------------------- 36

Query: 66  YVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKC 106
               P     F C  C + + +  ++ +H+++  G+     
Sbjct: 37  ----P-----FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 2  RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
          R H R H  ++P+ C +C+F +   S+++ H+K  H + 
Sbjct: 26 RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRH 222
              +   P +C  CS   S +  LR H
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIH 28

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 56.7 bits (138), Expect = 8e-11
 Identities = 30/135 (22%), Positives = 39/135 (28%), Gaps = 50/135 (37%)

Query: 98  HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKIL 157
            +G     C  C + F     L  H                                   
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLS-------------------------------- 29

Query: 158 LQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHT--KDKPYECGFCSLKF 213
             H+  K             Y C VC    ++ + M  H+R H     KPY C  C   F
Sbjct: 30  --HSGEK------------PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF 75

Query: 214 SRRDNLRRHLKDQHS 228
           SR D+L  H+K  HS
Sbjct: 76  SRPDHLNGHIKQVHS 90

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 27/123 (21%), Positives = 38/123 (30%), Gaps = 36/123 (29%)

Query: 8   HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYV 67
            SG     C  C      +  +N H      EK                           
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEK--------------------------- 34

Query: 68  PRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGE--KPFKCNFCFQCFTQNVSLQTHIRI 125
             P     ++C VC     R   M  H+R H G   KP+ C  C + F++   L  HI+ 
Sbjct: 35  --P-----YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87

Query: 126 KHT 128
            H+
Sbjct: 88  VHS 90

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 42/232 (18%), Positives = 58/232 (25%), Gaps = 92/232 (39%)

Query: 4   HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAK- 62
                   K Y C                          C        +    L  H   
Sbjct: 3   EKALPVVYKRYIC----------------------SFADCG----AAYNKNWKLQAHLCK 36

Query: 63  -------RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN--FCFQCF 113
                   C                C+        + RH   HTGEK F C+   C   F
Sbjct: 37  HTGEKPFPCKEEG------------CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRF 84

Query: 114 TQNVSLQTHIRIKHTRLFGQDKQESTRIY-CTFCRDPLYNDLKILLQHTKNCKGAFREND 172
           T   +++ H                  +Y C                H +NC  AF    
Sbjct: 85  TTKANMKKHFNR-FHN-------IKICVYVC----------------HFENCGKAF---- 116

Query: 173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC--GFCSLKFSRRDNLRRH 222
                        +++  +K H   HT+  PYEC    C  +FS    L+RH
Sbjct: 117 -------------KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 28/144 (19%), Positives = 41/144 (28%), Gaps = 34/144 (23%)

Query: 3   RHLRKHSGEKPYTC--YFCNFKSAHMSSINNHLKIKHLEKI--------QCRYSILKLQS 52
           RH   H+GEK +TC    C+ +    +++  H    H  KI         C     K   
Sbjct: 62  RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCG----KAFK 117

Query: 53  HEESLVQHAK--------RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPF 104
               L  H           C +              CD        ++RH + H G    
Sbjct: 118 KHNQLKVHQFSHTQQLPYECPHEG------------CDKRFSLPSRLKRHEKVHAGYPCK 165

Query: 105 KCNFCFQCFTQNVSLQTHIRIKHT 128
           K + C            H+   H 
Sbjct: 166 KDDSCSFVGKTWTLYLKHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 43/135 (31%)

Query: 2   RRHLRKHSGEKPYTC--YFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQ 59
           + HL KH+GEKP+ C    C      +  +  H      EK                   
Sbjct: 31  QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK------------------- 71

Query: 60  HAKRCSYVPRPNIQFNFTC--LVCDYHSPRSIDMRRHIRRHTGEK--PFKCNF--CFQCF 113
                          NFTC    CD       +M++H  R    K   + C+F  C + F
Sbjct: 72  ---------------NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF 116

Query: 114 TQNVSLQTHIRIKHT 128
            ++  L+ H    HT
Sbjct: 117 KKHNQLKVHQFS-HT 130

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 176 YVCMVCPYHCRQNESMKRHLRKHTK---DKPYECGFCSLKFSRRDNLRRHLKDQHS 228
             C +C + CRQ  S+  H RKH +      + C FC  +F + D++  H    H 
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHT---GEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFG 132
             C +C +   +   +  H R+H        F C FC + F +  S+  H    H  L  
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 133 QDKQES 138
             ++ S
Sbjct: 68  APQESS 73

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 15/109 (13%), Positives = 21/109 (19%), Gaps = 41/109 (37%)

Query: 98  HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKIL 157
            +G    +C  C     Q  SL  H R  H                              
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRK-HAETVAA------------------------ 36

Query: 158 LQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
                            R+ C  C     + +S+  H  K         
Sbjct: 37  ----------------LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 14/100 (14%), Positives = 23/100 (23%), Gaps = 31/100 (31%)

Query: 8   HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYV 67
            SG     C  C F     +S+N H +                         HA+  + +
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRK------------------------HAETVAAL 37

Query: 68  PRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
                   F C  C     +   +  H  +          
Sbjct: 38  R-------FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 54.4 bits (132), Expect = 5e-10
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           F C +C  +  RS  +  HIR HTGEKPF C+ C + F ++   + H  I   
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QH 55

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
           + C +C  +  +++ +  H+R HT +KP+ C  C  KF+R D  +RH
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           F C +C     RS + +RH        P   +   +  ++N  L+  +     
Sbjct: 32  FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKK 83

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 49/127 (38%)

Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHT 161
           KPF+C  C + F+++  L THIR                                   HT
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRT----------------------------------HT 27

Query: 162 --KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNL 219
             K             + C +C     +++  KRH        P          S+  +L
Sbjct: 28  GEK------------PFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHL 74

Query: 220 RRHLKDQ 226
              +   
Sbjct: 75  ENEVARL 81

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 76  FTCLVCDYHSPRSIDMRRHIR--RHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
           + C VC        +  RH         K + C FCF+ FT+  ++  H++I H
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 51.0 bits (123), Expect = 5e-09
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 176 YVCMVCPYHCRQNESMKRHLR--KHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
           Y C VC        +  RH         K Y C FC  +F+R+DN+  H+K  H
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 96  RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
               GE  ++C  C + +T   +   H    H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK 35

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 52.1 bits (126), Expect = 2e-09
 Identities = 26/53 (49%), Positives = 33/53 (62%)

Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
           +VC VC     + E +KRH R HT +KPY CG C+  F+RRD L RH +  HS
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 51.3 bits (124), Expect = 3e-09
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           F C VC     R   ++RH R HT EKP+ C  C + FT+   L  H +  H+
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           F C +C  +  RS  +  HIR HTGEKPF C+ C + F ++   + H +I H 
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HL 86

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 52.1 bits (126), Expect = 4e-09
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           +S  + RHIR HTG+KPF+C  C + F+++  L THIR  HT
Sbjct: 18  QSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT 58

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 50/128 (39%)

Query: 101 EKPFKCNF--CFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILL 158
           E+P+ C    C + F+Q+ SL  HIRI                                 
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRI--------------------------------- 28

Query: 159 QHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRR 216
            HT  K             + C +C  +  +++ +  H+R HT +KP+ C  C  KF+R 
Sbjct: 29  -HTGQKP------------FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75

Query: 217 DNLRRHLK 224
           D  +RH K
Sbjct: 76  DERKRHTK 83

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 51.8 bits (125), Expect = 4e-09
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 46/130 (35%)

Query: 97  RHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT--RLFGQDKQESTRIYCTFCRDPLYNDL 154
           + T         C + +T++  L+ H+R  HT  + +           C +         
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYH----------CDW--------- 40

Query: 155 KILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFS 214
                    C   F  +D                  + RH RKHT  +P++C  C   FS
Sbjct: 41  -------DGCGWKFARSD-----------------ELTRHYRKHTGHRPFQCQKCDRAFS 76

Query: 215 RRDNLRRHLK 224
           R D+L  H+K
Sbjct: 77  RSDHLALHMK 86

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           RS ++ RH R+HTG +PF+C  C + F+++  L  H++ 
Sbjct: 49  RSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 73  QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN--FCFQCFTQNVSLQTHIRIKHT 128
                   C     +S  ++ H+R HTGEKP+ C+   C   F ++  L  H R  HT
Sbjct: 5   THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HT 61

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 +GEKPFKC  C + FTQN  L +H R+ HT
Sbjct: 2   SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HT 36

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 + +KP++C  C  +F++   L  H
Sbjct: 2   SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 49.4 bits (119), Expect = 9e-09
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 GEKP+KC  C   F Q   L+ H+ I HT
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HT 35

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                  +KPY+C  C  +F +  +LR H
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAH 30

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 45/128 (35%)

Query: 11  EKPYTCYFCNFKSAHMSSINNHLKIKHL---EKIQCRYSILKLQSHEESLVQHAKRCSYV 67
           E       C+ +      + +H+  +H+    K                           
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERK--------------------------- 33

Query: 68  PRPNIQFNFTCLVCDYHSP-----RSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQ 120
                   F C                 +  H+RRHTGEKP KC F  C + +++  +L+
Sbjct: 34  -------EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLK 86

Query: 121 THIRIKHT 128
           TH+R  HT
Sbjct: 87  THLRS-HT 93

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 42/135 (31%)

Query: 1   MRRHLRKHSGEKPYTCYF--CNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLV 58
           +  H+R+H+GEKP+ C F  C    + + ++  HL+    EK                  
Sbjct: 55  LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK------------------ 96

Query: 59  QHAKRCSYVPRPNIQFNFTC--LVCDYHSPRSIDMRRHIRR-HTGEKPFKCNF--CFQCF 113
                    P       + C    C      + D  +H  R H+ EKP+ C    C + +
Sbjct: 97  ---------P-------YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY 140

Query: 114 TQNVSLQTHIRIKHT 128
           T   SL+ H++    
Sbjct: 141 TDPSSLRKHVKT-VH 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 48/129 (37%)

Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQH 160
           E   + + C Q F     L  HI  +H                                H
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHI-------------------------------H 29

Query: 161 TKNCKGAFRENDSYRYVCMVCPYHCR-----QNESMKRHLRKHTKDKPYECGF--CSLKF 213
                      +   +VC                 +  H+R+HT +KP++C F  C   +
Sbjct: 30  G-------ERKE---FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSY 79

Query: 214 SRRDNLRRH 222
           SR +NL+ H
Sbjct: 80  SRLENLKTH 88

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 1e-08
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 +GEKP+KCN C + FTQN  L  H RI HT
Sbjct: 2   SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HT 36

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 + +KPY+C  C   F++  +L  H
Sbjct: 2   SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 21/141 (14%), Positives = 30/141 (21%), Gaps = 60/141 (42%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFC 146
                 RH+  H G +P+ C  C + F     L  H++I                     
Sbjct: 21  HKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI--------------------- 59

Query: 147 RDPLYNDLKILLQHT-------KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHT 199
                        HT         C   F   DS+                   H    +
Sbjct: 60  -------------HTGIKPYECNICAKRFMWRDSF-------------------HRHVTS 87

Query: 200 KDKPYECGFCSLKFSRRDNLR 220
             K YE        +      
Sbjct: 88  CTKSYEAAKAEQNTTEASGPS 108

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 48.6 bits (117), Expect = 9e-08
 Identities = 26/129 (20%), Positives = 40/129 (31%), Gaps = 49/129 (37%)

Query: 96  RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLK 155
              +G+K + C  C + FT       H+ +                              
Sbjct: 3   SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSM------------------------------ 31

Query: 156 ILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKF 213
               H   +             Y C VC    +    +  H++ HT  KPYEC  C+ +F
Sbjct: 32  ----HLGLR------------PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75

Query: 214 SRRDNLRRH 222
             RD+  RH
Sbjct: 76  MWRDSFHRH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 43.6 bits (104), Expect = 6e-06
 Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 38/123 (30%)

Query: 6   RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCS 65
              SG+K Y C                         QC     K  +H+    +H     
Sbjct: 3   SGSSGDKLYPC-------------------------QCG----KSFTHKSQRDRH-MSMH 32

Query: 66  YVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
              RP     + C VC         +  H++ HTG KP++CN C + F    S   H+  
Sbjct: 33  LGLRP-----YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV-- 85

Query: 126 KHT 128
             +
Sbjct: 86  -TS 87

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 36/119 (30%)

Query: 3   RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAK 62
           RH+  H G +PY C  C  K      +  H+KI    K                      
Sbjct: 27  RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK---------------------- 64

Query: 63  RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQT 121
                  P     + C +C           RH+   +  K ++     Q  T+     +
Sbjct: 65  -------P-----YECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGPSS 109

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           Y C V  C     +++ + RH+R HT  KP++C  C   FSR D+L  H++
Sbjct: 20  YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 81  CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           CD    RS ++ RHIR HTG+KPF+C  C + F+++  L THIR  HT
Sbjct: 27  CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT 73

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 2e-08
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 G+K FKCN C + FTQ+ SL  H RI HT
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HT 36

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 40/132 (30%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
           MR+HL  H G + + C  C       S +  H  +   EK                    
Sbjct: 23  MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK-------------------- 61

Query: 61  AKRCSYVPRPNIQFNFTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQN 116
                    P     F C    C        ++R H+R HTG++P+ C F  C + F Q+
Sbjct: 62  ---------P-----FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107

Query: 117 VSLQTHIRIKHT 128
            +L++HI   H 
Sbjct: 108 TNLKSHILT-HA 118

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 46.7 bits (112), Expect = 6e-07
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 67/149 (44%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFC 146
            +  MR+H+  H G +   C  C + F ++  L      +H  +                
Sbjct: 19  DNSAMRKHLHTH-GPRVHVCAECGKAFVESSKL-----KRHQLV---------------- 56

Query: 147 RDPLYNDLKILLQHT--KNCKGAFRENDSYRYVCMVCPYHC---------RQNESMKRHL 195
                        HT  K                   P+ C           + +++ H+
Sbjct: 57  -------------HTGEK-------------------PFQCTFEGCGKRFSLDFNLRTHV 84

Query: 196 RKHTKDKPYECGF--CSLKFSRRDNLRRH 222
           R HT D+PY C F  C+ KF++  NL+ H
Sbjct: 85  RIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 50/140 (35%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT--RLFGQDKQESTRIYCT 144
            S       R H  + P     C + +T++  L+ H+R  HT  + +           CT
Sbjct: 5   SSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRT-HTGEKPYK----------CT 49

Query: 145 FCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPY 204
           +                + C   F  +D                  + RH RKHT  KP+
Sbjct: 50  W----------------EGCDWRFARSDE-----------------LTRHYRKHTGAKPF 76

Query: 205 ECGFCSLKFSRRDNLRRHLK 224
           +CG C+  FSR D+L  H+K
Sbjct: 77  QCGVCNRSFSRSDHLALHMK 96

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           RS ++ RH R+HTG KPF+C  C + F+++  L  H++  H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR-HQ 99

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+KC+ C + FT+   L  H +  HT
Sbjct: 2   SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HT 36

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPY+C  C   F+R+  L  H
Sbjct: 2   SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 +GEKPF+C  C + FTQN  L +H R+ HT
Sbjct: 2   SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HT 36

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 + +KP++C  C  +F++  +L  H
Sbjct: 2   SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 2e-08
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 +GEKPFKC  C + F QN+ L +H+RI HT
Sbjct: 2   SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HT 36

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 + +KP++C  C   F +  +L  H
Sbjct: 2   SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 2e-08
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+KCN C + FTQN  L  H  I HT
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HT 36

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPY+C  C   F++  +L RH
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 GEK +KC  C  CF+Q  SL+ H  + H 
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HV 36

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 GEKP++C+ C + F+Q  SL  HIR+ HT
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HT 35

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+KCN C + FTQN  L  H RI HT
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HT 36

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPY+C  C   F++  +L  H
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+ C  C + F  +  LQ H RI HT
Sbjct: 2   SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HT 36

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPY C  C   F     L+ H
Sbjct: 2   SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 GEK +KC+ C + F+Q+  LQTH R+ HT
Sbjct: 3   SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HT 36

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TG KP+ CN C + F+   SL TH  I HT
Sbjct: 2   SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HT 36

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 11/30 (36%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T  KPY C  C   FS   +L  H
Sbjct: 2   SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 GEKP+ C  C   F    +L++H+RI HT
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HT 35

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+KCN C + F+Q   L  H RI HT
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HT 36

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPY+C  C   FS+   L RH
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEK +KCN C + F++N  L  H +I HT
Sbjct: 2   SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HT 36

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 4e-08
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+KCN C + F  N  L  H RI HT
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HT 36

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPY+C  C   F     L RH
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 48.6 bits (117), Expect = 5e-08
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 92  RRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
             H   HTGEKP++CN C   F +  +L+TH RI H+
Sbjct: 34  ASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HS 69

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 48.2 bits (116), Expect = 5e-08
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 92  RRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
             H      +KP+KC+ C   F    +L +H  + HT
Sbjct: 6   HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HT 41

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
           Y C  C    R   ++  H   HT +KPY C  C  +F+R  NL+ H
Sbjct: 18  YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKPFKC  C + F++  +L  H ++ HT
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HT 36

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KP++C  C   FSRR  L  H
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGE+P+ C  C + FT   +L  H +I HT
Sbjct: 2   SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HT 36

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T ++PY C  C   F+ R NL +H
Sbjct: 2   SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 48.6 bits (117), Expect = 5e-08
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           +  DM++H   HTGEKP KC  C + F+Q+ +L TH R  HT
Sbjct: 41  QKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK-HT 81

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           RS  +  H+  H+  +P+ C +C + F Q   ++ H  I HT
Sbjct: 13  RSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HT 53

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
           PY C        Q   MK+H   HT +KP++C  C   FS+  NL  H
Sbjct: 29  PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 37.0 bits (87), Expect = 7e-04
 Identities = 11/47 (23%), Positives = 28/47 (59%)

Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
           + C +C    +++ ++  HL  H+  +PY C +C  +F ++ ++++H
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKPF+C  C + F+ +  L TH RI HT
Sbjct: 2   SSGSSGTGEKPFECAECGKSFSISSQLATHQRI-HT 36

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KP+EC  C   FS    L  H
Sbjct: 2   SSGSSGTGEKPFECAECGKSFSISSQLATH 31

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP++C  C + FT   +L TH +I HT
Sbjct: 2   SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HT 36

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPY C  C   F+ R NL  H
Sbjct: 2   SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP++C  C + F Q  +L  H RI HT
Sbjct: 2   SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HT 36

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPY CG C   F+++ NL +H
Sbjct: 2   SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 6e-08
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGE+P KCN C + F Q+  L  H RI HT
Sbjct: 2   SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HT 36

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T ++P++C  C   F +  +L +H
Sbjct: 2   SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 6e-08
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+KC+ C + F +N  L  H  I HT
Sbjct: 2   SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HT 36

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPY+C  C   F R  +L RH
Sbjct: 2   SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 6e-08
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+KCN C + F    SL  H    H+
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HS 36

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 +GEKP+KC+ C + F ++  L  H RI HT
Sbjct: 2   SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HT 36

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 47.9 bits (115), Expect = 7e-08
 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 47/116 (40%)

Query: 98  HTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT--RLFGQDKQESTRIYCTFCRDPLYND 153
            +G     C+F  C + F+    L  H + +H   + F           C          
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSF----------SCPE-------- 43

Query: 154 LKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC 209
                     C  +F                    + +K H++ H+  + Y C F 
Sbjct: 44  --------PACGKSF-----------------NFKKHLKEHMKLHSDTRDYICEFS 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 87  RSIDMRRHIR-RHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
               +  H + +H  +K F C    C + F     L+ H+++ H+
Sbjct: 21  NRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HS 64

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 37/110 (33%)

Query: 8   HSGEKPYTCYF--CNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCS 65
            SG     C F  C    ++   +N+H K +H               H+           
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH--------------IHQ----------- 36

Query: 66  YVPRPNIQFNFTC--LVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCF 113
              +      F+C    C         ++ H++ H+  + + C F     
Sbjct: 37  ---KS-----FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKPFKC  C + + Q V L  H R+ HT
Sbjct: 2   SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HT 36

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KP++CG C   +++R +L +H
Sbjct: 2   SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 49.0 bits (116), Expect = 8e-08
 Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 13/121 (10%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFC 146
                + +    TG   F+C  C   +   V L  H+           + ++        
Sbjct: 3   SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN----NNPK 58

Query: 147 RDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRK--HTKDKPY 204
           R        +L    K       E+      CM C +     + +  H+ K  H +    
Sbjct: 59  RWSKPRKRSLLEMEGK-------EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111

Query: 205 E 205
            
Sbjct: 112 P 112

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 30/130 (23%)

Query: 1   MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
            + +    +G   + C  C+     +  +  H+                          H
Sbjct: 7   GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE----------------------TGH 44

Query: 61  AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
            +  ++                +  PR   +     +   +K  KC +C   F     L 
Sbjct: 45  YRDDNHET-------DNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLS 97

Query: 121 TH-IRIKHTR 129
            H I+ KH +
Sbjct: 98  VHMIKTKHYQ 107

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 47.1 bits (113), Expect = 8e-08
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 G  P+KC+ C + F+  + L  H R+ HT
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HT 36

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 8e-08
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKPF+C+ C + F    +L  H R  HT
Sbjct: 2   SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HT 36

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KP+EC  C   F+ + NL  H
Sbjct: 2   SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 9e-08
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP+KCN C + F  + +L TH  I HT
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HT 36

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP+KC+ C + FT    L+ H +  HT
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HT 36

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP+KC+ C + F    SL  H RI HT
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HT 36

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP++C  C + FTQ   L  H +  HT
Sbjct: 2   SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HT 36

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPYEC  CS  F+++ +L +H
Sbjct: 2   SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP++CN C + F+   SL TH  I HT
Sbjct: 2   SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HT 36

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPYEC  C   FS R +L  H
Sbjct: 2   SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP+KC  C + F     L TH  + HT
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HT 36

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+ C  C + F     L  H R+ H+
Sbjct: 2   SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HS 36

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPY C  C   F     L +H
Sbjct: 2   SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKPFKC+ C + F     L  H  + HT
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HT 36

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                T +KP++C  C   F  R  L RH
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TG+KP++C  C + F QN SL  H R  HT
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT 37

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
                T  KPYEC  C   F +  +L RH +  H
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP+KCN C + FTQN  L  H  I HT
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HT 36

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TG+KP+KCN C + FTQN  L  H  I HT
Sbjct: 3   SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HT 36

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP++C+ C + F+   SL  H RI H+
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HS 36

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPYEC  C   FS R +L  H
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKPF C  C + F+ ++ L  H RI HT
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HT 36

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                T +KP++C  C   FS    L +H
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP +C  C + F+ N  L  H RI HT
Sbjct: 2   SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HT 36

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KP+EC  C   FS    L  H
Sbjct: 2   SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                  GEKP+ C+ C + F+    L  H+R  H+
Sbjct: 2   SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HS 36

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                   +KPY C  C   FS +  L  H
Sbjct: 2   SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 +GEKP++CN C + F     L  H R  H 
Sbjct: 2   SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HA 36

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 + +KPYEC  C   F  +  L  H
Sbjct: 2   SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP+KC  C + +    +L  H ++ HT
Sbjct: 3   SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HT 36

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                + EKP+KC  C + + + ++L  H R+ H 
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HM 36

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                + +KPY+C  C   ++RR NL  H
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                +GEKP+KC  C + + + + L  H R+ HT
Sbjct: 3   SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HT 36

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                + +KPY+C  C   + RR +L  H
Sbjct: 3   SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
            S D+ +H R HTGEKP+KC+ C + F Q   L  H R+ HT
Sbjct: 30  HSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HT 70

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 88  SIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           S    R   +    + +KC+ C + F+ +  L  H R  HT
Sbjct: 3   SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HT 42

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
           Y C  C      +  + +H R HT +KPY+C  C   F +R +L  H
Sbjct: 19  YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 187 QNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
            + S  R   +  + + Y+C  C   FS   +L +H
Sbjct: 2   SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEK + C  C + F++   L  H R+ H+
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HS 36

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                T +K Y C  C   FSR   L +H
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TG KP+ CN C + F     L  H R  HT
Sbjct: 2   SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HT 36

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 9/30 (30%), Positives = 10/30 (33%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T  KPY C  C   F  +  L  H
Sbjct: 2   SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGE PF C+ C + FT   +L  H +I HT
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIHQKI-HT 36

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP+ CN C + F Q   L  H RI HT
Sbjct: 3   SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HT 36

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                +GEKPFKC  C + F  N    +H R  H+
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HS 36

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 +GE+PFKCN C + F +   L  H+R+ H+
Sbjct: 2   SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HS 36

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP+KCN C + FTQN  L  H R+ HT
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HT 36

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TG++P++C  C + F    SL  H R  HT
Sbjct: 2   SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HT 36

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T  +PYEC  C   F  + +L  H
Sbjct: 2   SSGSSGTGQRPYECIECGKAFKTKSSLICH 31

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                +GEKP+ CN C + F+Q   L  H R  HT
Sbjct: 3   SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HT 36

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 94  HIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
                TGEKPF C +  C   F+++  L  H R  H+
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HS 38

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 194 HLRKHTKDKPYECGF--CSLKFSRRDNLRRHLK 224
                T +KP+ C +  C  +FSR D L RH +
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR 35

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 36.1 bits (84), Expect = 6e-04
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 87  RSIDMRRHIRRHTGEKPFKCN 107
           RS ++ RH R H+G KP   +
Sbjct: 26  RSDELSRHRRSHSGVKPSGPS 46

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TG KP+ C+ C + F+    L  H R  HT
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HT 36

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T  KPY C  C+  FS +  L  H
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.5 bits (109), Expect = 3e-07
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP++CN C + F    +L  H R  HT
Sbjct: 3   SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HT 36

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                T +KPYEC  C   F+ + NL  H
Sbjct: 3   SGSSGTGEKPYECNECQKAFNTKSNLMVH 31

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP++C+ C + FT+   L  H +I HT
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HT 36

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPYEC  C   F+++  L  H
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+ CN C + F  +  L  H+R+ HT
Sbjct: 2   SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HT 36

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP++C  C + F+Q   L  H R+ HT
Sbjct: 2   SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HT 36

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T +KPYEC  C   FS+  +L +H
Sbjct: 2   SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 +GEKP+ C++C + F  +  L  H RI HT
Sbjct: 2   SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HT 36

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 + +KPY C +C   F     L RH
Sbjct: 2   SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
                TGEKPF+C  C   F+ + SL  H+R  H R
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HER 37

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
                T +KP++C  C + FS   +L +HL+
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TG+KPF+C  C + F    +L TH RI HT
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HT 36

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                T  KP+EC  C   F  + NL  H
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 +  K  +C+ C + FT    L  H RI HT
Sbjct: 2   SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HT 36

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           RS  + +H R HTGEKP+KC  C + F+QN  L  H RI HT
Sbjct: 26  RSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HT 66

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 44.8 bits (107), Expect = 9e-07
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                H+GEKP+ C  C + F+++  L  H R+ HT
Sbjct: 4   GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV-HT 38

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 39.4 bits (93), Expect = 8e-05
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
           PY C        ++  + +H R HT +KPY+C  C   FS+   L  H
Sbjct: 14  PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP++C+ C + F+ + SL  H R+ H+
Sbjct: 3   SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HS 36

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                  GE+  +C+ C + F Q  +   H RI HT
Sbjct: 2   SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HT 36

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP+KC  C + F  N S   H R+ HT
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HT 36

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TG K F+C  C + FT+  +L  H +I HT
Sbjct: 2   SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HT 36

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TG KP++CN C + F+Q   L  H R+ HT
Sbjct: 3   SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HT 36

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP+ C  C + FT   +L  H +I HT
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HT 36

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                T +KPY C  C   F+ R NL +H
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKH 31

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP+KC  C + F  +  L  H  + H+
Sbjct: 2   SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HS 36

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGE P++C+ C + F++   L +H R  H 
Sbjct: 2   SSGSSGTGENPYECHECGKAFSRKYQLISHQRT-HA 36

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T + PYEC  C   FSR+  L  H
Sbjct: 2   SSGSSGTGENPYECHECGKAFSRKYQLISH 31

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.5 bits (106), Expect = 6e-07
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGEKP++C+ C + F +   L  H RI HT
Sbjct: 3   SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HT 36

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 45.1 bits (106), Expect = 6e-07
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           +Y+C  C    ++   +K+H+R HT  +PY C +C+  F  + NL +H+K
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
           + C  C     +   +++HIR HT  +P+ C +C   F    +L  H++ 
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 36.2 bits (83), Expect = 8e-04
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 1  MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
          +++H+R H+  +PY C +CNF      ++  H+K K   K
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 9e-07
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 +G+KP++C  C + F Q   L  H R+ HT
Sbjct: 2   SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HT 36

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 9e-07
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGEKP KC  C + F     L  H R  H 
Sbjct: 2   SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HV 36

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
                 GE P+ C  C + FTQ  SL  H R   ++
Sbjct: 2   SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQ 36

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGE+ ++C+ C + F Q  +L  H RI H 
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQRI-HR 36

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                +  KP+ C  C + F++   L  HI+  HT
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRR-HTGEKPFKCNFCFQCFTQ 115
           + C  C     R   +  HI++ HT E+P KC       + 
Sbjct: 13  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
                +  KPY C  C   FSR D+L  H+K  H+
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 GEKP++C+ C + F+ +  L  H    HT
Sbjct: 3   SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HT 36

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.6 bits (104), Expect = 1e-06
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                 TGE+ ++C+ C + F +  +L  H RI HT
Sbjct: 2   SSGSSGTGERHYECSECGKAFARKSTLIMHQRI-HT 36

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                 T ++ YEC  C   F+R+  L  H
Sbjct: 2   SSGSSGTGERHYECSECGKAFARKSTLIMH 31

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
                T  K + CN C + FT+   L  H +I HTR
Sbjct: 3   SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTR 37

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRI 125
           +S  ++ H R HTGEKPF C++  C + F ++  L  H R 
Sbjct: 31  KSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 192 KRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHLK 224
           K H R HT +KP+ C +  C  +F+R D L RH +
Sbjct: 36  KAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 96  RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
              +G++ ++C  C + F Q  SL  H RI HT
Sbjct: 3   SGSSGQRVYECQECGKSFRQKGSLTLHERI-HT 34

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 42.1 bits (100), Expect = 4e-06
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 98  HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
            +GEKPF C+ C + F+    L  H +  H 
Sbjct: 5   SSGEKPFGCSCCEKAFSSKSYLLVHQQT-HA 34

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.3 bits (98), Expect = 7e-06
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
                +GE+P+ CN C + F ++  L  H++  H R
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFR 37

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 41.3 bits (98), Expect = 8e-06
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                TGE P++C  C + F++   L +H +  H+
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HS 36

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
                T + PYEC  C   FSR+D L  H
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKDQLVSH 31

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
                +GEK   C+ C + F    +L+ H R+ H 
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HM 36

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
             R  T  KP++C  C   FSR D+L  H K
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
             R  TG KPF+C  C + F+++  L  H +
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 96  RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
              +GE P++C+ C + F +   L +H R  H 
Sbjct: 3   SGSSGENPYECSECGKAFNRKDQLISHQRT-HA 34

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 10/47 (21%), Positives = 15/47 (31%)

Query: 81  CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
           CD        ++RH + H G    K + C            H+   H
Sbjct: 39  CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 87  RSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
           +   ++ H   HT + P++C    C + F+    L+ H ++ H 
Sbjct: 15  KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HA 57

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 9/55 (16%)

Query: 182 PYHCRQNE---------SMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
           PY C              +KRH + H      +   CS          +H+ + H
Sbjct: 31  PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 186 RQNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRH 222
           +++  +K H   HT+  PYEC    C  +FS    L+RH
Sbjct: 14  KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
                  GE PFKC+ C + FTQ   L  H R  H R
Sbjct: 2   SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT-HAR 37

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 98  HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
            +GEKP+ C  C + F+ N  L  H ++ HT
Sbjct: 5   SSGEKPYSCAECKETFSDNNRLVQHQKM-HT 34

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
            ++VC +C      + S+K+H+R         C  C  +F+  D+   H+  +H+
Sbjct: 73  SQFVCPLCLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKKHN 125

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 25/99 (25%)

Query: 8   HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYV 67
              +       C+   + M  +  H+ ++H+   +    +                C + 
Sbjct: 20  DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV----------------CYW- 62

Query: 68  PRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKC 106
                     C            +  HIR HTGEK    
Sbjct: 63  --------EECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Length = 30

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 202 KPYECGFCSLKFSRRDNLRRHLKDQHS 228
           K Y CG C+  F+RRD L RH +  HS
Sbjct: 1   KAYACGLCNRAFTRRDLLIRHAQKIHS 27

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 35.7 bits (82), Expect = 8e-04
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCS 210
           +  C +C    R    + RH   H+ +KPY  G  S
Sbjct: 12  QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.96
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.86
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.77
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.77
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.76
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.76
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.76
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.74
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.74
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.73
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.73
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.73
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.72
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.72
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.72
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.71
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.71
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.64
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.64
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.64
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.64
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.61
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.6
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.6
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.58
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.57
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.57
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.57
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.56
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.56
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.55
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.54
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.53
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.53
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.52
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.51
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.5
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.5
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.49
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.49
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.47
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.45
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.44
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.44
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.44
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.44
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.43
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.43
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.42
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.42
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.38
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.38
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.38
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.38
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.37
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.37
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.36
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.35
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.35
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.31
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.31
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.28
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.28
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.24
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.21
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.21
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.2
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.2
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.19
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.19
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.19
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.18
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.18
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.17
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.16
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.14
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.11
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.11
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.1
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.1
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.09
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.09
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.09
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.08
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.08
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.07
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.07
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.06
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.05
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.04
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.04
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.03
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.02
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.01
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.99
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.99
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.98
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.95
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.95
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.95
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.93
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.92
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.91
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.9
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.9
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.9
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.89
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.89
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.87
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.87
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.87
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.85
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.85
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.84
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.84
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.83
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.82
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.81
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.8
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.79
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.77
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.77
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.75
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.74
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.73
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.72
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.7
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.63
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.6
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.59
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.58
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.58
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.57
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.57
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.53
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.46
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.45
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.44
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.43
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.43
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.38
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.37
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.36
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.3
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.25
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.25
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.23
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.23
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.23
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.22
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.22
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.22
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.21
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.21
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.21
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.2
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.2
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.19
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.19
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.16
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.16
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.16
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.15
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.15
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.15
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.14
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.14
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.13
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.12
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.11
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.39
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.1
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.37
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.37
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.09
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.36
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.08
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.35
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.07
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.07
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.07
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.04
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.24
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.94
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.78
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.72
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.67
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.54
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.13
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.71
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.7
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.43
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.37
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.35
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.21
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.35
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.33
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.65
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	92.86
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	92.11
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.29
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	89.58
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	89.48
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	87.99
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	87.82
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	86.55
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.55
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	84.28
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	84.02
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	83.89
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.82
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	80.55
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	80.35

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=4.3e-38  Score=248.45  Aligned_cols=182  Identities=30%  Similarity=0.585  Sum_probs=142.9

Q ss_pred             CccccccccCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCC
Q psy4409           1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLV   80 (305)
Q Consensus         1 L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~   80 (305)
                      |..|++.|.++++|.|+.|++.|.+...|..|++.|++.                             .+     |.|..
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------------~~-----~~C~~   54 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGE-----------------------------KP-----YKCPE   54 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC--------------------------------CC-----EECTT
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCC-----------------------------CC-----ccCCC
Confidence            567888999999999999999999999999999776542                             22     99999


Q ss_pred             CCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHH
Q psy4409          81 CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQH  160 (305)
Q Consensus        81 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h  160 (305)
                      |++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|++.++..         .+|.|+.|+ +.|.....|..|
T Consensus        55 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------~~~~C~~C~-~~f~~~~~l~~H  124 (190)
T 2i13_A           55 CGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE---------KPYACPECG-KSFSQLAHLRAH  124 (190)
T ss_dssp             TCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTC---------CCEECTTTC-CEESSHHHHHHH
T ss_pred             cCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCC---------CCCcCCCCC-CccCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999996543         289999999 999999999999


Q ss_pred             HhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCcccc
Q psy4409         161 TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF  232 (305)
Q Consensus       161 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~  232 (305)
                      ++.|.+.      ++|.|+.|++.|.+...|..|+++|+++++|.|++|++.|.++..|..|+++|++++||
T Consensus       125 ~~~h~~~------~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          125 QRTHTGE------KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHHCC------CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC------
T ss_pred             HHHhCCC------CCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            9999987      89999999999999999999999999999999999999999999999999999998875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=7.2e-35  Score=229.93  Aligned_cols=181  Identities=27%  Similarity=0.477  Sum_probs=144.5

Q ss_pred             HHHHHhhhccCCCCCCCCCCCcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCcccccc
Q psy4409          55 ESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQD  134 (305)
Q Consensus        55 ~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~  134 (305)
                      ..|..|+ ..+.++.+     |.|+.|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|++.++..     
T Consensus         7 ~~l~~h~-~~~~~~~~-----~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----   75 (190)
T 2i13_A            7 SSSVAQA-ALEPGEKP-----YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE-----   75 (190)
T ss_dssp             ------------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCC-----
T ss_pred             ccchhhh-hhcCCCCC-----CcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCC-----
Confidence            4555565 45555555     999999999999999999999999999999999999999999999999996543     


Q ss_pred             ccCcCccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcC
Q psy4409         135 KQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFS  214 (305)
Q Consensus       135 ~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  214 (305)
                          .+|.|+.|+ +.|.....|..|++.|.+.      ++|.|+.|++.|.+...|..|+++|.++++|.|++|++.|.
T Consensus        76 ----~~~~C~~C~-~~f~~~~~l~~H~~~h~~~------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  144 (190)
T 2i13_A           76 ----KPYKCPECG-KSFSQRANLRAHQRTHTGE------KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFS  144 (190)
T ss_dssp             ----CCEECTTTC-CEESCHHHHHHHHHHHHTC------CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             ----CCccCcccC-CccCCHHHHHHHHHhcCCC------CCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccC
Confidence                289999999 9999999999999999887      89999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCccccCCCCCCCCCCceeeecCCccccceecCCC
Q psy4409         215 RRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNISTMRVTSPS  261 (305)
Q Consensus       215 ~~~~l~~H~~~hh~~~~~~c~~c~~~~~~~~~~~~~~~~h~~~~~~~  261 (305)
                      ++..|..|++.|+++++|.|+.|+.    .|.....|..|+++|.++
T Consensus       145 ~~~~L~~H~~~H~~~~~~~C~~C~~----~f~~~~~L~~H~~~H~~~  187 (190)
T 2i13_A          145 REDNLHTHQRTHTGEKPYKCPECGK----SFSRRDALNVHQRTHTGK  187 (190)
T ss_dssp             CHHHHHHHHHHHHCCCCEECTTTCC----EESSHHHHHHHHTTC---
T ss_pred             CHHHHHHHHHhcCCCCCeECCCCCC----ccCCHHHHHHHHHhcCCC
Confidence            9999999999999999999999976    899999999999998754

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=3.8e-31  Score=208.59  Aligned_cols=170  Identities=25%  Similarity=0.377  Sum_probs=149.1

Q ss_pred             cCCCcccC--CCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCccc--CCCCcc
Q psy4409           9 SGEKPYTC--YFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTC--LVCDYH   84 (305)
Q Consensus         9 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C--~~C~~~   84 (305)
                      .+.++|.|  +.|++.|.+...|..|+++|.++.                                  +|.|  ..|++.
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~----------------------------------~~~C~~~~C~~~   53 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEK----------------------------------PFPCKEEGCEKG   53 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCC----------------------------------SSCCSSTTCCCC
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCC----------------------------------CccCCCCCCChh
Confidence            46789999  689999999999999997776432                                  2999  889999


Q ss_pred             CCCcHHHHHHHHhhCCCCCeeCC--cCcccccChHHHHHHHHHhcCccccccccCcCcccc--CCCCccchhcHHHHHHH
Q psy4409          85 SPRSIDMRRHIRRHTGEKPFKCN--FCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYC--TFCRDPLYNDLKILLQH  160 (305)
Q Consensus        85 f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C--~~C~~~~~~~~~~l~~h  160 (305)
                      |.+...|..|+++|.++++|.|+  .|++.|.+...|..|++..|..       +..+|.|  +.|+ +.|.....|..|
T Consensus        54 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~-------~~~~~~C~~~~C~-k~f~~~~~L~~H  125 (190)
T 1tf6_A           54 FTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI-------KICVYVCHFENCG-KAFKKHNQLKVH  125 (190)
T ss_dssp             CSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSST-------TTSCCEECSSSSC-EECSSHHHHHHH
T ss_pred             hCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCC-------CcceeeCCCCCCc-cccCCHHHHHHH
Confidence            99999999999999999999999  8999999999999999665632       2237999  8899 999999999999


Q ss_pred             HhhhcCccccCCCCCcccCC--CcccccCcHHHHHHHHHhCCCCCccCcc---chhhcCChHHHHHHHHhcCCc
Q psy4409         161 TKNCKGAFRENDSYRYVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGF---CSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       161 ~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      ++.|.+.      ++|.|+.  |++.|.+...|..|+++|++   |.|..   |++.|.+...|..|++.|+++
T Consensus       126 ~~~H~~~------~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          126 QFSHTQQ------LPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             HGGGSSS------CSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             HHHhCCC------CCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            9999887      8999988  99999999999999999988   89999   999999999999999998874

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.96  E-value=1e-29  Score=200.42  Aligned_cols=165  Identities=24%  Similarity=0.402  Sum_probs=148.4

Q ss_pred             CCCccc--CCCCccCCCcHHHHHHHHhhCCCCCeeC--CcCcccccChHHHHHHHHHhcCccccccccCcCccccC--CC
Q psy4409          73 QFNFTC--LVCDYHSPRSIDMRRHIRRHTGEKPFKC--NFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCT--FC  146 (305)
Q Consensus        73 ~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~--~C  146 (305)
                      ..+|.|  ..|++.|.+...|..|++.|.++++|.|  +.|++.|.+...|..|+++|+..         .+|.|.  .|
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~---------~~~~C~~~~C   80 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE---------KNFTCDSDGC   80 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTC---------CCEECCSSSC
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCC---------CceeCCCCCC
Confidence            345999  6899999999999999999999999999  88999999999999999984332         389999  89


Q ss_pred             CccchhcHHHHHHHH-hhhc-CccccCCCCCccc--CCCcccccCcHHHHHHHHHhCCCCCccCcc--chhhcCChHHHH
Q psy4409         147 RDPLYNDLKILLQHT-KNCK-GAFRENDSYRYVC--MVCPYHCRQNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLR  220 (305)
Q Consensus       147 ~~~~~~~~~~l~~h~-~~~~-~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~  220 (305)
                      + +.|.+...|..|+ ..|. +.      .+|.|  +.|++.|.+...|..|+++|+++++|.|++  |++.|.+++.|.
T Consensus        81 ~-~~f~~~~~l~~H~~~~h~~~~------~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~  153 (190)
T 1tf6_A           81 D-LRFTTKANMKKHFNRFHNIKI------CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK  153 (190)
T ss_dssp             C-CEESCHHHHHHHHHTTSSTTT------SCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHH
T ss_pred             C-CccCCHHHHHHHHHHhcCCCc------ceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHH
Confidence            9 9999999999999 4442 33      78999  899999999999999999999999999988  999999999999


Q ss_pred             HHHHhcCCccccCCCC---CCCCCCceeeecCCccccceecCC
Q psy4409         221 RHLKDQHSYDSFRSST---KKPGKYGVLIVKGSNISTMRVTSP  260 (305)
Q Consensus       221 ~H~~~hh~~~~~~c~~---c~~~~~~~~~~~~~~~~h~~~~~~  260 (305)
                      .|++.|++   |.|..   |+.    .|.....|..|+++|.+
T Consensus       154 ~H~~~H~~---~~C~~~~~C~~----~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          154 RHEKVHAG---YPCKKDDSCSF----VGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             HHHTSSCS---CCCCSTTTCCC----CCSCHHHHHHHHTTCC-
T ss_pred             HHHHHhCC---CcCCCCCcCCC----ccccHHHHHHHHHhhcC
Confidence            99999988   89999   865    78899999999998864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=3.7e-26  Score=173.98  Aligned_cols=138  Identities=27%  Similarity=0.554  Sum_probs=126.2

Q ss_pred             CcccCCCCccCCCcHHHHHHHH---hhCCCCCeeCCcC-----cccccChHHHHHHHHHhcCccccccccCcCccccCC-
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIR---RHTGEKPFKCNFC-----FQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTF-  145 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~---~h~~~~~~~C~~C-----~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~-  145 (305)
                      +|.|..|++.|.+...|..|++   +|.+.++|.|++|     ++.|.+...|..|++.++..         .+|.|++ 
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~---------~~~~C~~~   73 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE---------KPHKCTFE   73 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC---------CCCCCCST
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCC---------CCccCCCC
Confidence            4999999999999999999998   6788899998753     49999999999999995433         2899985 


Q ss_pred             -CCccchhcHHHHHHHHhhhcCccccCCCCCcccCC--CcccccCcHHHHHHH-HHhCCCCCccCcc--chhhcCChHHH
Q psy4409         146 -CRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMV--CPYHCRQNESMKRHL-RKHTKDKPYECGF--CSLKFSRRDNL  219 (305)
Q Consensus       146 -C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~--C~~~f~~~~~l  219 (305)
                       |+ +.|.....|..|++.|.+.      ++|.|++  |++.|.+...|..|+ ++|.++++|.|++  |++.|.+++.|
T Consensus        74 ~C~-~~f~~~~~l~~H~~~h~~~------~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L  146 (155)
T 2gli_A           74 GCR-KSYSRLENLKTHLRSHTGE------KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL  146 (155)
T ss_dssp             TCC-CCCSSHHHHHHHHHHTTTC------CCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHH
T ss_pred             CCC-CcccCHHHHHHHHHHcCCC------CCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHH
Confidence             99 9999999999999999887      8999998  999999999999998 7899999999998  99999999999


Q ss_pred             HHHHHhcCC
Q psy4409         220 RRHLKDQHS  228 (305)
Q Consensus       220 ~~H~~~hh~  228 (305)
                      ..|++.||+
T Consensus       147 ~~H~~~hhg  155 (155)
T 2gli_A          147 RKHVKTVHG  155 (155)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHhhcC
Confidence            999999986

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=4.8e-24  Score=155.93  Aligned_cols=115  Identities=29%  Similarity=0.607  Sum_probs=101.7

Q ss_pred             CCcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhc
Q psy4409          74 FNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYND  153 (305)
Q Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~  153 (305)
                      .+|.|.+|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|+..+|..                        
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~------------------------   61 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN------------------------   61 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCC------------------------
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcC------------------------
Confidence            34999999999999999999999999999999999999999999999999874321                        


Q ss_pred             HHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         154 LKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       154 ~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                                 .      ..++|.|++|++.|.+...|..|+++|.++++|.|++|++.|.++..|..|++.+|+.
T Consensus        62 -----------~------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           62 -----------R------SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             -----------S------CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             -----------C------CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence                       0      1267899999999999999999999999999999999999999999999999876653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=3.5e-24  Score=163.00  Aligned_cols=143  Identities=22%  Similarity=0.434  Sum_probs=123.0

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCC-----CCccC
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLV-----CDYHS   85 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~-----C~~~f   85 (305)
                      |.+|.|+.|++.|.+...|..|++.++                          .|.+..+     |.|.+     |++.|
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h--------------------------~h~~~~~-----~~C~~c~C~~c~~~f   49 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEH--------------------------IHGERKE-----FVCHWGGCSRELRPF   49 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHT--------------------------SSSCSSC-----CCCCBTTCTTTTCCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhc--------------------------cCCCCcc-----eeCCCCCccchhhhh
Confidence            468999999999999999999996422                          1222223     77664     45999


Q ss_pred             CCcHHHHHHHHhhCCCCCeeCCc--CcccccChHHHHHHHHHhcCccccccccCcCccccCC--CCccchhcHHHHHHHH
Q psy4409          86 PRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTF--CRDPLYNDLKILLQHT  161 (305)
Q Consensus        86 ~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~--C~~~~~~~~~~l~~h~  161 (305)
                      .+...|..|++.|.++++|.|++  |++.|.+...|..|+++++..         .+|.|+.  |+ +.|.....|..|+
T Consensus        50 ~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~---------~~~~C~~~~C~-~~f~~~~~L~~H~  119 (155)
T 2gli_A           50 KAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE---------KPYMCEHEGCS-KAFSNASDRAKHQ  119 (155)
T ss_dssp             SSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTC---------CCEECCSTTCC-CEESSSSTTHHHH
T ss_pred             hhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCC---------CCeeCCCCCCC-CccCCHHHHHHHH
Confidence            99999999999999999999986  999999999999999994332         3899998  99 9999999999998


Q ss_pred             -hhhcCccccCCCCCcccCC--CcccccCcHHHHHHHHHhCC
Q psy4409         162 -KNCKGAFRENDSYRYVCMV--CPYHCRQNESMKRHLRKHTK  200 (305)
Q Consensus       162 -~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  200 (305)
                       +.|.+.      ++|.|++  |++.|.+...|..|+++|+|
T Consensus       120 ~~~H~~~------~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          120 NRTHSNE------KPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             HHTTCSC------CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHhcCCC------CCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence             788877      8999998  99999999999999999875

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=2.9e-23  Score=150.61  Aligned_cols=109  Identities=32%  Similarity=0.657  Sum_probs=93.0

Q ss_pred             CCcccCC--CCccCCCcHHHHHHHHhhCCCCCeeCC--cCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCcc
Q psy4409          74 FNFTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCN--FCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDP  149 (305)
Q Consensus        74 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~  149 (305)
                      .+|.|.+  |++.|.+...|..|++.|.++++|.|+  .|++.|.+...|..|++.++..                    
T Consensus         5 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------------------   64 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV--------------------   64 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCC--------------------
T ss_pred             eeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCC--------------------
Confidence            3488886  888888888888888888888888888  6888888888888888874321                    


Q ss_pred             chhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccC--ccchhhcCChHHHHHHHHhc
Q psy4409         150 LYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC--GFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       150 ~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h  226 (305)
                                              ++|.|+.|++.|.+...|..|+++|.++++|.|  +.|++.|.++..|..|+++|
T Consensus        65 ------------------------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           65 ------------------------KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ------------------------CCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             ------------------------CCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence                                    678899999999999999999999999999999  78999999999999998865

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.89  E-value=2.2e-23  Score=158.58  Aligned_cols=128  Identities=23%  Similarity=0.378  Sum_probs=94.8

Q ss_pred             CCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCC
Q psy4409         101 EKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMV  180 (305)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~  180 (305)
                      ..+|.|..|++.|.+...|..|++.+|.............|.|..|+ +.|.....|..|++.|.+.      ++|.|.+
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~------~~~~C~~   95 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREG-KSFKAKYKLVNHIRVHTGE------KPFPCPF   95 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSS-CCCSSHHHHHHHTHHHHCC------CSEECSC
T ss_pred             hcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcc-cccCCHHHHHHHHHhcCCC------CcccCCc
Confidence            34566666666666666666666654443111000011125677777 6667777777777766665      8899998


Q ss_pred             --CcccccCcHHHHHHHHHhCCCCCccCcc--chhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         181 --CPYHCRQNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       181 --C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                        |++.|.....|..|+++|+++++|.|.+  |++.|.+...|..|++.|+++++|.|.
T Consensus        96 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           96 PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             TTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence              9999999999999999999999999997  999999999999999999999999886

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=1.7e-23  Score=153.01  Aligned_cols=112  Identities=27%  Similarity=0.591  Sum_probs=83.7

Q ss_pred             cccC--CCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhc
Q psy4409          76 FTCL--VCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYND  153 (305)
Q Consensus        76 ~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~  153 (305)
                      |.|+  .|++.|.+...|..|+++| +.++|.|+.|++.|.+...|..|++.+                           
T Consensus         6 ~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h---------------------------   57 (124)
T 1ubd_C            6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH---------------------------   57 (124)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGT---------------------------
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHc---------------------------
Confidence            7776  6777777777777777666 666777777777777777777776652                           


Q ss_pred             HHHHHHHHhhhcCccccCCCCCcccCC--CcccccCcHHHHHHHHHhCCCCCccCcc--chhhcCChHHHHHHHHhcCCc
Q psy4409         154 LKILLQHTKNCKGAFRENDSYRYVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       154 ~~~l~~h~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~~  229 (305)
                                 .+.      ++|.|..  |++.|.+...|..|+++|.++++|.|++  |++.|.+++.|..|+++|+++
T Consensus        58 -----------~~~------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~  120 (124)
T 1ubd_C           58 -----------TGE------KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA  120 (124)
T ss_dssp             -----------SCC------CCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC--
T ss_pred             -----------CCC------CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHccc
Confidence                       222      6788875  9999999999999999999999999964  999999999999999999887


Q ss_pred             ccc
Q psy4409         230 DSF  232 (305)
Q Consensus       230 ~~~  232 (305)
                      +++
T Consensus       121 k~~  123 (124)
T 1ubd_C          121 KNN  123 (124)
T ss_dssp             ---
T ss_pred             ccC
Confidence            765

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=1.1e-23  Score=155.06  Aligned_cols=93  Identities=24%  Similarity=0.480  Sum_probs=81.2

Q ss_pred             cccccccCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCC
Q psy4409           3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCD   82 (305)
Q Consensus         3 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~   82 (305)
                      .|.++|.|+++|.|++|++.|.+...|..|+++|.++                             ++     |.|.+|+
T Consensus        12 h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~-----------------------------k~-----~~C~~C~   57 (133)
T 2lt7_A           12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWE-----------------------------KK-----YPCRYCE   57 (133)
T ss_dssp             EEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCC-----------------------------SC-----EECSSSS
T ss_pred             hceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCC-----------------------------CC-----eeCCccC
Confidence            3556788999999999999999999999999776543                             22     9999999


Q ss_pred             ccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          83 YHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        83 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      +.|.+...|..|+++|.+++||.|++|++.|.+...|..|++++|..
T Consensus        58 k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           58 KVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             CEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             eecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            99999999999999999999999999999999999999999997764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=4.1e-22  Score=145.61  Aligned_cols=116  Identities=32%  Similarity=0.553  Sum_probs=95.5

Q ss_pred             CCCcccCC--CCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCCC
Q psy4409          10 GEKPYTCY--FCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPR   87 (305)
Q Consensus        10 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~   87 (305)
                      ++++|.|+  .|++.|.+...|..|+++| +.                             .     +|.|.+|++.|.+
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~-----------------------------~-----~~~C~~C~~~f~~   46 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GP-----------------------------R-----VHVCAECGKAFVE   46 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SC-----------------------------C-----CEECTTTCCEESS
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CC-----------------------------C-----CeECCCCCchhCC
Confidence            46799999  8999999999999999765 21                             2     2999999999999


Q ss_pred             cHHHHHHHHhhCCCCCeeCCc--CcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhc
Q psy4409          88 SIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCK  165 (305)
Q Consensus        88 ~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~  165 (305)
                      ...|..|++.|.++++|.|++  |++.|.+...|..|++.|+..                                    
T Consensus        47 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~------------------------------------   90 (124)
T 1ubd_C           47 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD------------------------------------   90 (124)
T ss_dssp             HHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCC------------------------------------
T ss_pred             HHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCC------------------------------------
Confidence            999999999999999999986  999999999999999885322                                    


Q ss_pred             CccccCCCCCcccC--CCcccccCcHHHHHHHHHhCCCCCc
Q psy4409         166 GAFRENDSYRYVCM--VCPYHCRQNESMKRHLRKHTKDKPY  204 (305)
Q Consensus       166 ~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~  204 (305)
                              ++|.|+  .|++.|.+...|..|+++|++++++
T Consensus        91 --------~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           91 --------RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             --------CCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             --------CceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence                    678885  4999999999999999999888765

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=5.1e-22  Score=144.01  Aligned_cols=85  Identities=34%  Similarity=0.700  Sum_probs=76.8

Q ss_pred             cCCCcccCCC--CCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccC--CCCcc
Q psy4409           9 SGEKPYTCYF--CNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCL--VCDYH   84 (305)
Q Consensus         9 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~--~C~~~   84 (305)
                      +++++|.|++  |++.|.+...|..|++.|.+.                             .     +|.|.  .|++.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------------~-----~~~C~~~~C~~~   47 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE-----------------------------K-----PYQCDFKDCERR   47 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTT-----------------------------C-----CEECCSTTCCCE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCC-----------------------------C-----CccCCCCCCcCc
Confidence            5789999997  999999999999999776543                             2     29999  79999


Q ss_pred             CCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhc
Q psy4409          85 SPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH  127 (305)
Q Consensus        85 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  127 (305)
                      |.+...|..|++.|.++++|.|+.|++.|.+...|..|+++|+
T Consensus        48 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   90 (119)
T 2jp9_A           48 FSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT   90 (119)
T ss_dssp             ESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999853

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=148.95  Aligned_cols=118  Identities=21%  Similarity=0.389  Sum_probs=107.7

Q ss_pred             CCcccCCCCccCCCcHHHHHHHHh-hCCCCC--------eeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccC
Q psy4409          74 FNFTCLVCDYHSPRSIDMRRHIRR-HTGEKP--------FKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCT  144 (305)
Q Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~  144 (305)
                      ..|.|..|++.|.+...|..|++. |.+..+        |.|+.|++.|.+...|..|+++|+..         .+|.|.
T Consensus        24 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------~~~~C~   94 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE---------KPFPCP   94 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCC---------CSEECS
T ss_pred             cccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCC---------CcccCC
Confidence            349999999999999999999997 666554        89999999999999999999995432         289999


Q ss_pred             C--CCccchhcHHHHHHHHhhhcCccccCCCCCcccCC--CcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         145 F--CRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMV--CPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       145 ~--C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      +  |+ +.|.....|..|++.|.+.      ++|.|.+  |++.|.+...|..|+++|++++||.|.
T Consensus        95 ~~~C~-~~f~~~~~L~~H~~~h~~~------~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           95 FPGCG-KIFARSENLKIHKRTHTGE------KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CTTTC-CEESCHHHHHHHHTTTCSS------CSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             cCCCC-CccCCHHHHHHHHHhhCCC------CCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            8  99 9999999999999999987      8999997  999999999999999999999999985

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=2.1e-21  Score=141.73  Aligned_cols=115  Identities=23%  Similarity=0.390  Sum_probs=87.7

Q ss_pred             cCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCCCc
Q psy4409           9 SGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRS   88 (305)
Q Consensus         9 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~~   88 (305)
                      +++++|.|++|++.|.+...|..|+++|++..                                  +|.|..|++.|.+.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~----------------------------------~~~C~~C~~~f~~~   48 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEK----------------------------------PFECPKCGKCYFRK   48 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCC----------------------------------SCBCTTTCCBCSSH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCC----------------------------------CeECCCCCchhcCH
Confidence            57899999999999999999999998876542                                  27788888888888


Q ss_pred             HHHHHHHHh---hCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhh-h
Q psy4409          89 IDMRRHIRR---HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKN-C  164 (305)
Q Consensus        89 ~~l~~H~~~---h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~-~  164 (305)
                      ..|..|+..   +.++++|.|++|++.|.+...|..|+++|+..         .+|.|+.|+ +.|.....|..|++. |
T Consensus        49 ~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------~~~~C~~C~-~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           49 ENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE---------MPYKCSSCS-QQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             HHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSS---------CSEECSSSC-CEESSHHHHHHHHHHTS
T ss_pred             HHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCC---------CCccCCCcc-chhCCHHHHHHHHHHHC
Confidence            888888774   45667788888888888887788887774322         267788887 777777778777763 4


Q ss_pred             cCc
Q psy4409         165 KGA  167 (305)
Q Consensus       165 ~~~  167 (305)
                      .++
T Consensus       119 ~~~  121 (124)
T 2dlq_A          119 SGP  121 (124)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            443

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=1.2e-21  Score=144.08  Aligned_cols=59  Identities=22%  Similarity=0.361  Sum_probs=49.9

Q ss_pred             ccCCCCCCCCCCCcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHh
Q psy4409          63 RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIK  126 (305)
Q Consensus        63 ~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  126 (305)
                      .+|.++++     |.|.+|++.|.+...|..|+++|.+++||.|+.|++.|.+...|..|+++|
T Consensus        15 ~~h~Gek~-----y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   73 (133)
T 2lt7_A           15 LIVDGRVY-----YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH   73 (133)
T ss_dssp             EEETTEEE-----EEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             eecCCCcC-----eECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhcccc
Confidence            45555555     999999999999999999999998889999999999999999999998873

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1e-19  Score=130.90  Aligned_cols=96  Identities=15%  Similarity=0.192  Sum_probs=85.3

Q ss_pred             CccccccccCCCcccCCCCCCcCcChHHHHhhhhh--ccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCccc
Q psy4409           1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI--KHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTC   78 (305)
Q Consensus         1 L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C   78 (305)
                      |.+|+++|++++||.|++|++.|.+...|..|++.  |...                             .+    .+.|
T Consensus         7 l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~-----------------------------~~----~~~C   53 (115)
T 2dmi_A            7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRD-----------------------------DN----HETD   53 (115)
T ss_dssp             CCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBC-----------------------------SC----CCCC
T ss_pred             hhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcccc-----------------------------CC----CccC
Confidence            67899999999999999999999999999999976  2211                             11    1569


Q ss_pred             CCCCccC--CCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          79 LVCDYHS--PRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        79 ~~C~~~f--~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      .+|++.|  .....|..|+++|.+++||.|++|++.|.....|..|++.+|..
T Consensus        54 ~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           54 NNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            9999999  89999999999999999999999999999999999999997654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=1.3e-18  Score=123.18  Aligned_cols=89  Identities=24%  Similarity=0.495  Sum_probs=72.9

Q ss_pred             CccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHH
Q psy4409         139 TRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDN  218 (305)
Q Consensus       139 ~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  218 (305)
                      .+|.|..|+ +.|.....|..|++.|.+.      ++|.|.+|++.|.....|..|+++|.++++|.|.+|++.|.+...
T Consensus        16 ~~~~C~~C~-~~f~~~~~l~~H~~~h~~~------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   88 (106)
T 2ee8_A           16 KEFICKFCG-RHFTKSYNLLIHERTHTDE------RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRT   88 (106)
T ss_dssp             CCCBCSSSC-CBCSSHHHHHHHHHHHCCS------CCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHH
T ss_pred             cCeECCCCC-CccCCHHHHHHHHHHcCCC------CCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHH
Confidence            355666666 5666666666666666555      789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCccccCC
Q psy4409         219 LRRHLKDQHSYDSFRS  234 (305)
Q Consensus       219 l~~H~~~hh~~~~~~c  234 (305)
                      |..|++.|+++++|.+
T Consensus        89 L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           89 LAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHhCCCCCCcC
Confidence            9999999999888764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3.1e-20  Score=133.67  Aligned_cols=106  Identities=17%  Similarity=0.261  Sum_probs=87.1

Q ss_pred             cHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhcCc
Q psy4409          88 SIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGA  167 (305)
Q Consensus        88 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~  167 (305)
                      ...|..|+++|.++++|.|+.|++.|.+...|..|++. +..                                   .+.
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-~~h-----------------------------------~~~   47 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGH-----------------------------------YRD   47 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHH-TCC-----------------------------------CBC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHH-hCc-----------------------------------ccc
Confidence            34577788899999999999999999999999999987 211                                   000


Q ss_pred             cccCCCCCcccCCCcccc--cCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         168 FRENDSYRYVCMVCPYHC--RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       168 ~~~~~~~~~~C~~C~~~f--~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                           ...+.|+.|++.|  .....|..|+++|.+++||.|++|++.|.++..|..|++.||......+
T Consensus        48 -----~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           48 -----DNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             -----SCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             -----CCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcccCCC
Confidence                 0234588898888  8889999999999999999999999999999999999999888665443

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=9.1e-19  Score=124.24  Aligned_cols=95  Identities=17%  Similarity=0.263  Sum_probs=74.9

Q ss_pred             HHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhcCccccCCCC
Q psy4409          95 IRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSY  174 (305)
Q Consensus        95 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~  174 (305)
                      ++.|.++++|.|++|++.|.+...|..|+++| .                                             +
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H-~---------------------------------------------~   41 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-R---------------------------------------------N   41 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH-H---------------------------------------------H
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHC-C---------------------------------------------C
Confidence            34566777888888888888888888887763 1                                             4


Q ss_pred             CcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHH-hcCCccccCCCC
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK-DQHSYDSFRSST  236 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~hh~~~~~~c~~  236 (305)
                      +|.|.+|++.|.....|..|+. |.++++|.|.+|++.|.....|..|++ .|.++++|.+..
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~  103 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSG  103 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCCC
T ss_pred             CccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5778888888888888888885 888888888888888888888888887 677777777653

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.76  E-value=3e-18  Score=121.31  Aligned_cols=89  Identities=25%  Similarity=0.530  Sum_probs=73.8

Q ss_pred             CCcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhc
Q psy4409          74 FNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYND  153 (305)
Q Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~  153 (305)
                      .+|.|.+|++.|.+...|..|++.|.++++|.|++|++.|.+...|..|++.| ..                        
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h-~~------------------------   70 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH-SK------------------------   70 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGS-CC------------------------
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHh-CC------------------------
Confidence            34888888888888888888888888888888888888888888888887763 21                        


Q ss_pred             HHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccC
Q psy4409         154 LKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC  206 (305)
Q Consensus       154 ~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  206 (305)
                                   .      ++|.|.+|++.|.....|..|+++|.++++|.+
T Consensus        71 -------------~------~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           71 -------------E------KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             -------------C------CTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             -------------C------CCeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence                         1      678899999999999999999999998888765

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=2.1e-18  Score=119.82  Aligned_cols=86  Identities=23%  Similarity=0.568  Sum_probs=69.6

Q ss_pred             CccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHH
Q psy4409         139 TRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDN  218 (305)
Q Consensus       139 ~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  218 (305)
                      .+|.|..|+ +.|.....|..|++.|.+.      ++|.|+.|++.|.....|..|+++|.++++|.|++|++.|.+...
T Consensus         7 ~~~~C~~C~-~~f~~~~~l~~H~~~h~~~------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   79 (96)
T 2dmd_A            7 GPHKCEVCG-KCFSRKDKLKTHMRCHTGV------KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQ   79 (96)
T ss_dssp             CCCCBTTTT-BCCCCHHHHHHHGGGCCCC------CSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHH
T ss_pred             cCeECCCCC-CccCCHHHHHHHHHhcCCC------CCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHH
Confidence            355566665 5555556666666555554      789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCccc
Q psy4409         219 LRRHLKDQHSYDS  231 (305)
Q Consensus       219 l~~H~~~hh~~~~  231 (305)
                      |..|++.|+++++
T Consensus        80 l~~H~~~h~~~~~   92 (96)
T 2dmd_A           80 LTVHLRSHTGDSG   92 (96)
T ss_dssp             HHHHHTTCCSCCC
T ss_pred             HHHHHHHhcCCCC
Confidence            9999999988764

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.74  E-value=2.2e-18  Score=116.03  Aligned_cols=81  Identities=27%  Similarity=0.503  Sum_probs=62.0

Q ss_pred             cccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHH
Q psy4409         141 IYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLR  220 (305)
Q Consensus       141 ~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  220 (305)
                      |.|..|+ +.|.....|..|++.|.+.      ++|.|+.|++.|.+...|..|+++|.++++|.|++|++.|.+.+.|.
T Consensus         2 ~~C~~C~-~~f~~~~~l~~H~~~h~~~------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   74 (82)
T 2kmk_A            2 FDCKICG-KSFKRSSTLSTHLLIHSDT------RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLI   74 (82)
T ss_dssp             EECSSSC-CEESSHHHHHHHHHHHHTC------CCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHH
T ss_pred             ccCCCCc-ccccCchhHHHHHHHcCCC------CCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHH
Confidence            3444444 4444444444444444444      78899999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC
Q psy4409         221 RHLKDQHS  228 (305)
Q Consensus       221 ~H~~~hh~  228 (305)
                      .|++.|++
T Consensus        75 ~H~~~H~g   82 (82)
T 2kmk_A           75 THSRKHTG   82 (82)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHhhCC
Confidence            99998864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=3.6e-18  Score=121.11  Aligned_cols=90  Identities=18%  Similarity=0.293  Sum_probs=81.4

Q ss_pred             cccccccCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCC
Q psy4409           3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCD   82 (305)
Q Consensus         3 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~   82 (305)
                      .+++.|+++++|.|++|++.|.....|..|+++|..                                    +|.|.+|+
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~------------------------------------~~~C~~C~   49 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN------------------------------------AAVCPYCS   49 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHH------------------------------------SBCCTTTC
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCCC------------------------------------CccCCCCC
Confidence            467889999999999999999999999999977521                                    19999999


Q ss_pred             ccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          83 YHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        83 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      +.|.....|..|+. |.++++|.|++|++.|.+...|..|++..|..
T Consensus        50 ~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           50 LRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             CCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             CccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcCC
Confidence            99999999999995 99999999999999999999999999855765

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=6.4e-18  Score=117.33  Aligned_cols=88  Identities=25%  Similarity=0.598  Sum_probs=76.8

Q ss_pred             cccCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCC
Q psy4409           7 KHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSP   86 (305)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~   86 (305)
                      .+.++++|.|++|++.|.+...|..|++.|+..                             .+     |.|.+|++.|.
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------------~~-----~~C~~C~~~f~   47 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV-----------------------------KP-----YKCKTCDYAAA   47 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCC-----------------------------CS-----EECSSSCCEES
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhcCCC-----------------------------CC-----EeCCCCCCccC
Confidence            456789999999999999999999999766542                             22     99999999999


Q ss_pred             CcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcC
Q psy4409          87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT  128 (305)
Q Consensus        87 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  128 (305)
                      +...|..|++.|.++++|.|++|++.|.+...|..|+++|+.
T Consensus        48 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           48 DSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG   89 (96)
T ss_dssp             SHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999998543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.73  E-value=3.9e-18  Score=116.92  Aligned_cols=57  Identities=30%  Similarity=0.697  Sum_probs=51.2

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      ++|.|+.|++.|.+...|..|+++|.++++|.|++|++.|.+.+.|..|++.|++++
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            788999999999999999999999999999999999999999999999999988764

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=6.3e-18  Score=120.49  Aligned_cols=88  Identities=30%  Similarity=0.630  Sum_probs=71.2

Q ss_pred             hhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCc
Q psy4409          97 RHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRY  176 (305)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~  176 (305)
                      .|.++++|.| .|++.|.+...|..|++.++                                      +.      ++|
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~--------------------------------------~~------~~~   38 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL--------------------------------------GL------RPY   38 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHS--------------------------------------CC------CSE
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcC--------------------------------------CC------cCc
Confidence            3556677777 67777777777777776632                                      22      678


Q ss_pred             ccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         177 VCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       177 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      .|++|++.|.....|..|+++|.++++|.|++|++.|.....|..|++.|+..
T Consensus        39 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           39 GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             ECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHHHHH
T ss_pred             cCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHcccc
Confidence            89999999999999999999999999999999999999999999999988764

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.73  E-value=8.7e-18  Score=113.01  Aligned_cols=81  Identities=28%  Similarity=0.575  Sum_probs=65.2

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHH
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLK  155 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~  155 (305)
                      |.|.+|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|++.++..                          
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------------------   55 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE--------------------------   55 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTC--------------------------
T ss_pred             ccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCC--------------------------
Confidence            788888888888888888888888888888888888888888888888774322                          


Q ss_pred             HHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCC
Q psy4409         156 ILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTK  200 (305)
Q Consensus       156 ~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  200 (305)
                                        ++|.|+.|++.|.+...|..|+++|+|
T Consensus        56 ------------------~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           56 ------------------KPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             ------------------CCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             ------------------CCCcCCCcchhhCChHHHHHHHHhhCC
Confidence                              567788888888888888888877764

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.72  E-value=3.5e-18  Score=106.56  Aligned_cols=58  Identities=26%  Similarity=0.519  Sum_probs=55.1

Q ss_pred             CCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       173 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      ++||.|.+||+.|...+.|..|+++|++++||.|.+||+.|...+.|..|+++|.+++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            4899999999999999999999999999999999999999999999999999998864

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.9e-17  Score=114.68  Aligned_cols=82  Identities=34%  Similarity=0.706  Sum_probs=60.1

Q ss_pred             ccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCC--CCccCccchhhcCChH
Q psy4409         140 RIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKD--KPYECGFCSLKFSRRD  217 (305)
Q Consensus       140 ~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~  217 (305)
                      +|.|.+|+ +.|.....|..|++.|.+.      ++|.|+.|++.|.....|..|++.|++.  ++|.|++|++.|.++.
T Consensus         7 ~~~C~~C~-~~f~~~~~l~~H~~~h~~~------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~   79 (95)
T 2yt9_A            7 GVACEICG-KIFRDVYHLNRHKLSHSGE------KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD   79 (95)
T ss_dssp             CEECSSSC-CEESSSHHHHHHHHHSCSS------CSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHH
T ss_pred             CeECCCCC-CccCChHHHHHHHHhcCCC------CCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHH
Confidence            44444444 4444444444444444443      7889999999999999999999999887  8899999999999999


Q ss_pred             HHHHHHHhcCC
Q psy4409         218 NLRRHLKDQHS  228 (305)
Q Consensus       218 ~l~~H~~~hh~  228 (305)
                      .|..|++..|.
T Consensus        80 ~L~~H~~~~H~   90 (95)
T 2yt9_A           80 HLNGHIKQVHS   90 (95)
T ss_dssp             HHHHHHHHTSC
T ss_pred             HHHHHHHHhcC
Confidence            99999875444

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.72  E-value=1.4e-17  Score=114.20  Aligned_cols=84  Identities=35%  Similarity=0.729  Sum_probs=63.9

Q ss_pred             CcccC--CCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchh
Q psy4409          75 NFTCL--VCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYN  152 (305)
Q Consensus        75 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~  152 (305)
                      +|.|+  .|++.|.+...|..|+++|.++++|.|+.|++.|.+...|..|+++++.                        
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~------------------------   59 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG------------------------   59 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC------------------------
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCC------------------------
Confidence            38887  4888888888888888888888888888888888888888888777432                        


Q ss_pred             cHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCC
Q psy4409         153 DLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDK  202 (305)
Q Consensus       153 ~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  202 (305)
                                    .      ++|.|+.|++.|.+...|..|+++|++++
T Consensus        60 --------------~------~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           60 --------------E------KPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             --------------C------CCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             --------------C------CCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence                          1      56778888888888888888888877654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.1e-17  Score=119.30  Aligned_cols=89  Identities=28%  Similarity=0.521  Sum_probs=80.5

Q ss_pred             ccccCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccC
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHS   85 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f   85 (305)
                      ..|+++++|.| .|++.|.+...|..|++.|++.                             .     +|.|.+|++.|
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~-----------------------------~-----~~~C~~C~~~f   47 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGL-----------------------------R-----PYGCGVCGKKF   47 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCC-----------------------------C-----SEECTTTSCEE
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCC-----------------------------c-----CccCCCCCccc
Confidence            46899999999 9999999999999999776542                             2     29999999999


Q ss_pred             CCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          86 PRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        86 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      .+...|..|+++|.++++|.|++|++.|.+...|..|++.+|..
T Consensus        48 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           48 KMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             SSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHcccc
Confidence            99999999999999999999999999999999999999997643

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=2e-17  Score=114.59  Aligned_cols=87  Identities=29%  Similarity=0.536  Sum_probs=68.7

Q ss_pred             cCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCCCc
Q psy4409           9 SGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRS   88 (305)
Q Consensus         9 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~~   88 (305)
                      +++++|.|++|++.|.+...|..|+++|++.                             .     +|.|.+|++.|.+.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------------~-----~~~C~~C~~~f~~~   48 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGE-----------------------------K-----PYSCPVCGLRFKRK   48 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSS-----------------------------C-----SEECSSSCCEESCH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCC-----------------------------C-----CCcCCCCCCccCCH
Confidence            4678888888888888888888888665532                             2     28888888888888


Q ss_pred             HHHHHHHHhhCCC--CCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          89 IDMRRHIRRHTGE--KPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        89 ~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      ..|..|++.|++.  ++|.|+.|++.|.+...|..|++..|.+
T Consensus        49 ~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           49 DRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             HHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcCC
Confidence            8888888888876  7888888888888888888888755654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.64  E-value=5.4e-16  Score=108.34  Aligned_cols=83  Identities=34%  Similarity=0.772  Sum_probs=65.4

Q ss_pred             CccccCC--CCccchhcHHHHHHHHhhhcCccccCCCCCcccC--CCcccccCcHHHHHHHHHhCCCCCccCccchhhcC
Q psy4409         139 TRIYCTF--CRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM--VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFS  214 (305)
Q Consensus       139 ~~~~C~~--C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  214 (305)
                      ..|.|.+  |+ +.|.....|..|++.|.+.      ++|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.
T Consensus        14 ~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   86 (100)
T 2ebt_A           14 RIHYCDYPGCT-KVYTKSSHLKAHLRTHTGE------KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS   86 (100)
T ss_dssp             CCEECCSSSCC-CEESCHHHHHHHHHHHSCC------CCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCS
T ss_pred             cceEcCCCCCC-CcccCHHHHHHHHHHhCCC------CCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccC
Confidence            3555654  66 6666666666666666555      788896  59999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCC
Q psy4409         215 RRDNLRRHLKDQHS  228 (305)
Q Consensus       215 ~~~~l~~H~~~hh~  228 (305)
                      ....|..|++.|++
T Consensus        87 ~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           87 RSDHLALHMKRHQN  100 (100)
T ss_dssp             SHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHhCC
Confidence            99999999988764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=106.10  Aligned_cols=84  Identities=27%  Similarity=0.545  Sum_probs=68.3

Q ss_pred             CCCcccCC--CCccCCCcHHHHHHHHhhCCCCCeeCC--cCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCc
Q psy4409          73 QFNFTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCN--FCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRD  148 (305)
Q Consensus        73 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~  148 (305)
                      ...|.|.+  |++.|.....|..|++.|.++++|.|+  .|++.|.+...|..|++.|+..                   
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-------------------   73 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA-------------------   73 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSC-------------------
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCC-------------------
Confidence            34599986  999999999999999999999999996  5999999999999998874322                   


Q ss_pred             cchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCC
Q psy4409         149 PLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTK  200 (305)
Q Consensus       149 ~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  200 (305)
                                               ++|.|++|++.|.....|..|+++|.+
T Consensus        74 -------------------------~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           74 -------------------------KPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             -------------------------CSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             -------------------------CCeECCCCcCccCCHHHHHHHHHHhCC
Confidence                                     567777777778777888888777753

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.64  E-value=3.1e-16  Score=107.07  Aligned_cols=80  Identities=31%  Similarity=0.682  Sum_probs=62.5

Q ss_pred             ccccCC--CCccchhcHHHHHHHHhhhcCccccCCCCCcccC--CCcccccCcHHHHHHHHHhCCCCCccCccchhhcCC
Q psy4409         140 RIYCTF--CRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCM--VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSR  215 (305)
Q Consensus       140 ~~~C~~--C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  215 (305)
                      +|.|.+  |+ +.|.....|..|++.|.+.      ++|.|+  .|++.|.+...|..|+++|.++++|.|+.|++.|.+
T Consensus         5 ~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   77 (89)
T 2wbs_A            5 THTCDYAGCG-KTYTKSSHLKAHLRTHTGE------KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSR   77 (89)
T ss_dssp             CEECCSTTTC-CEESSHHHHHHHHTTSCSS------CCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred             CeeCCCCCCC-CcCCCHHHHHHHHHhcCCC------CCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCC
Confidence            555665  66 6666666666666665555      788887  589999988999999888888888999999999999


Q ss_pred             hHHHHHHHHhc
Q psy4409         216 RDNLRRHLKDQ  226 (305)
Q Consensus       216 ~~~l~~H~~~h  226 (305)
                      .+.|..|++.|
T Consensus        78 ~~~l~~H~~~H   88 (89)
T 2wbs_A           78 SDHLALHMKRH   88 (89)
T ss_dssp             HHHHHHHGGGG
T ss_pred             HHHHHHHHHhh
Confidence            99999998776

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=4.7e-16  Score=105.46  Aligned_cols=83  Identities=27%  Similarity=0.426  Sum_probs=72.1

Q ss_pred             CccccccccCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCC
Q psy4409           1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLV   80 (305)
Q Consensus         1 L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~   80 (305)
                      |.+|+++|+++++|.|++|++.|.....|..|++.++...                         ..+.     +|.|.+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~-------------------------~~~~-----~~~C~~   52 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN-------------------------FVPA-----AFVCSK   52 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS-------------------------CCCC-----CEECSS
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc-------------------------CCCc-----ceECCC
Confidence            5789999999999999999999999999999997776431                         0012     399999


Q ss_pred             CCccCCCcHHHHHHHHhhCCCCCeeCCcCcccc
Q psy4409          81 CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCF  113 (305)
Q Consensus        81 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  113 (305)
                      |++.|.....|..|+++|++++++.|..|+..|
T Consensus        53 C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           53 CGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             SCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            999999999999999999999999999999876

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.61  E-value=1.1e-15  Score=104.41  Aligned_cols=81  Identities=31%  Similarity=0.689  Sum_probs=64.2

Q ss_pred             CCcccCCC--CCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccC--CCCccCC
Q psy4409          11 EKPYTCYF--CNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCL--VCDYHSP   86 (305)
Q Consensus        11 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~--~C~~~f~   86 (305)
                      .++|.|++  |++.|.+...|..|++.|.+.                             .+     |.|.  .|++.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------------~~-----~~C~~~~C~~~f~   48 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGE-----------------------------KP-----YHCDWDGCGWKFA   48 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSS-----------------------------CC-----EECCSTTTCCEES
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCC-----------------------------CC-----cCCCCCCCCCccC
Confidence            46788888  888888888888888655432                             22     8886  4888888


Q ss_pred             CcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHH
Q psy4409          87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI  125 (305)
Q Consensus        87 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (305)
                      +...|..|++.|.++++|.|+.|++.|.+...|..|+++
T Consensus        49 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           49 RSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             SHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHHHHh
Confidence            888888888888888888888888888888888888876

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=1.1e-16  Score=109.13  Aligned_cols=82  Identities=16%  Similarity=0.286  Sum_probs=63.2

Q ss_pred             ccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHH
Q psy4409         140 RIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNL  219 (305)
Q Consensus       140 ~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  219 (305)
                      +|.|..|+ +.|.....|..|++.|.+.      ++|.|+.|++.|.....|..|+++|++ .+|.|+.|++.|.+...|
T Consensus         3 ~~~C~~C~-k~f~~~~~L~~H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L   74 (88)
T 1llm_C            3 PFQCRICM-RNFSRSDHLTTHIRTHTGE------KPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHL   74 (88)
T ss_dssp             CEECTTTC-CEESCHHHHHHHHHHHHCC------CCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCC-CccCCHHHHHHHHHHcCCC------CCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhh
Confidence            34444444 4444444444444444444      789999999999999999999999885 789999999999999999


Q ss_pred             HHHHHhcCCc
Q psy4409         220 RRHLKDQHSY  229 (305)
Q Consensus       220 ~~H~~~hh~~  229 (305)
                      ..|++.+|+.
T Consensus        75 ~~H~~~~h~~   84 (88)
T 1llm_C           75 ENEVARLKKL   84 (88)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=2.1e-16  Score=107.70  Aligned_cols=81  Identities=31%  Similarity=0.479  Sum_probs=72.6

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcH
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDL  154 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~  154 (305)
                      +|.|.+|++.|.+...|..|+++|.++++|.|+.|++.|.+...|..|++.+|..          ++.|..|+ +.|...
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~----------~~~c~~C~-~~f~~~   71 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL----------PILEDKVE-ELLSKN   71 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHH----------HHHHHHHH-HHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCC----------cchHHHHH-HHHHHH
Confidence            4999999999999999999999999999999999999999999999999997643          78888888 888888


Q ss_pred             HHHHHHHhhhcC
Q psy4409         155 KILLQHTKNCKG  166 (305)
Q Consensus       155 ~~l~~h~~~~~~  166 (305)
                      ..|..|++..++
T Consensus        72 ~~L~~H~~~~h~   83 (88)
T 1llm_C           72 YHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHH
Confidence            888888876554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=9.7e-16  Score=101.59  Aligned_cols=63  Identities=27%  Similarity=0.549  Sum_probs=60.3

Q ss_pred             CCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         172 DSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       172 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      ..++|.|.+|++.|.....|..|+++|.++++|.|++|++.|.....|..|++.|++++||.|
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            348899999999999999999999999999999999999999999999999999999999987

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.60  E-value=7e-16  Score=96.07  Aligned_cols=55  Identities=27%  Similarity=0.621  Sum_probs=51.9

Q ss_pred             CCcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          74 FNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      ++|.|.+|++.|.....|..|+++|.+++||.|+.|++.|.....|..|+++ |.+
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~-Htg   57 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV-HQN   57 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG-GSC
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc-cCC
Confidence            4599999999999999999999999999999999999999999999999998 654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.1e-15  Score=103.68  Aligned_cols=76  Identities=21%  Similarity=0.474  Sum_probs=69.0

Q ss_pred             HHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCC----CCccCccchhhcCChHHHHHHHHhcCCccccC
Q psy4409         158 LQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKD----KPYECGFCSLKFSRRDNLRRHLKDQHSYDSFR  233 (305)
Q Consensus       158 ~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  233 (305)
                      ..|++.|.++      ++|.|..|++.|.....|..|++.|+..    ++|.|.+|++.|..+..|..|++.|++++++.
T Consensus         4 ~~H~~~H~~~------k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~   77 (86)
T 1x6h_A            4 GSSGRTHTGE------KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE   77 (86)
T ss_dssp             TCCSTTCCCC------CCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCC
T ss_pred             ccccceecCC------CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcc
Confidence            3467777776      8999999999999999999999987765    78999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy4409         234 SSTKKP  239 (305)
Q Consensus       234 c~~c~~  239 (305)
                      |..|++
T Consensus        78 ~~~~~~   83 (86)
T 1x6h_A           78 GENSGP   83 (86)
T ss_dssp             CCCCCC
T ss_pred             cCCCCC
Confidence            999976

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.57  E-value=2.6e-15  Score=101.44  Aligned_cols=74  Identities=22%  Similarity=0.368  Sum_probs=57.3

Q ss_pred             CCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCC--CcccccCcHHHHHHHHHhCCCCCccCcc---chhhcCChHH
Q psy4409         144 TFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGF---CSLKFSRRDN  218 (305)
Q Consensus       144 ~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~  218 (305)
                      +.|+ +.|.....|..|++.|.+.      ++|.|+.  |++.|.+...|..|+++|++   |.|+.   |++.|.+.+.
T Consensus         7 ~~C~-~~f~~~~~l~~H~~~h~~~------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~   76 (85)
T 2j7j_A            7 ENCG-KAFKKHNQLKVHQFSHTQQ------LPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTL   76 (85)
T ss_dssp             TTCC-CEESSHHHHHHHHHHHHTT------CCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHH
T ss_pred             CCCC-cccCCHHHHHHHHHHhCCC------CCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHH
Confidence            4444 4444444444444444444      7889988  99999999999999999987   89999   9999999999


Q ss_pred             HHHHHHhcC
Q psy4409         219 LRRHLKDQH  227 (305)
Q Consensus       219 l~~H~~~hh  227 (305)
                      |..|++.||
T Consensus        77 l~~H~~~hh   85 (85)
T 2j7j_A           77 YLKHVAECH   85 (85)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            999998876

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=2.2e-15  Score=104.61  Aligned_cols=72  Identities=22%  Similarity=0.420  Sum_probs=64.5

Q ss_pred             ccCCCCCcccCCCcccccCcHHHHHHHH-Hh---CCCCCccCccchhhcCChHHHHHH-HHhcCCccccCCCCCCCC
Q psy4409         169 RENDSYRYVCMVCPYHCRQNESMKRHLR-KH---TKDKPYECGFCSLKFSRRDNLRRH-LKDQHSYDSFRSSTKKPG  240 (305)
Q Consensus       169 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~hh~~~~~~c~~c~~~  240 (305)
                      ...+.++|.|..|++.|...+.|..|++ +|   .+++||.|..|++.|..++.|..| ++.|.+++||.|.++...
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~~   88 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKRN   88 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCCS
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccCC
Confidence            3445689999999999999999999998 58   568999999999999999999999 899999999999986553

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.57  E-value=3.5e-15  Score=98.06  Aligned_cols=61  Identities=28%  Similarity=0.607  Sum_probs=58.1

Q ss_pred             CCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCcccc
Q psy4409         172 DSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF  232 (305)
Q Consensus       172 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~  232 (305)
                      +.++|.|..|++.|.....|..|+++|.++++|.|.+|++.|..+..|..|++.|++++||
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4488999999999999999999999999999999999999999999999999999999876

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.56  E-value=6.2e-16  Score=113.38  Aligned_cols=80  Identities=21%  Similarity=0.454  Sum_probs=66.3

Q ss_pred             ccccCCCCccch------hcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhc
Q psy4409         140 RIYCTFCRDPLY------NDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKF  213 (305)
Q Consensus       140 ~~~C~~C~~~~~------~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  213 (305)
                      .+.|.+|. ..|      .....|..|+ .|.+.      ++|.|.+|++.|.....|..|+++|  ++||.|++|++.|
T Consensus        41 ~~~c~~~~-~~~~~~~~~~~~~~l~~h~-~h~~~------~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f  110 (129)
T 2wbt_A           41 RLIRAIVK-TLIHNPQLLDESSYLYRLL-ASKAI------SQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEF  110 (129)
T ss_dssp             HHHHHHHH-HHHHCGGGTTTHHHHHHHH-HHHHH------CSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBC
T ss_pred             cccchhhh-cccCCCcccCCHHHHHHHH-HhCCC------CCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCccc
Confidence            45566655 333      3455666666 46665      8999999999999999999999999  8899999999999


Q ss_pred             CChHHHHHHHHhcCCc
Q psy4409         214 SRRDNLRRHLKDQHSY  229 (305)
Q Consensus       214 ~~~~~l~~H~~~hh~~  229 (305)
                      ..++.|..|++.||+.
T Consensus       111 ~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          111 TSTDSALDHVCKKHNI  126 (129)
T ss_dssp             SSHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHCCc
Confidence            9999999999999985

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.56  E-value=4.2e-15  Score=100.42  Aligned_cols=77  Identities=18%  Similarity=0.317  Sum_probs=51.6

Q ss_pred             cccC--CCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCC--CCccCCCc
Q psy4409          13 PYTC--YFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLV--CDYHSPRS   88 (305)
Q Consensus        13 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~--C~~~f~~~   88 (305)
                      ||.|  +.|++.|.+...|..|+++|.++                             +     +|.|+.  |++.|.+.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------------~-----~~~C~~~~C~~~f~~~   46 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQ-----------------------------L-----PYECPHEGCDKRFSLP   46 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTT-----------------------------C-----CEECCSTTCCCEESSH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCC-----------------------------C-----CeeCCCCCCcCccCCH
Confidence            5667  66777777777777776554432                             1     277766  77777777


Q ss_pred             HHHHHHHHhhCCCCCeeCCc---CcccccChHHHHHHHHHh
Q psy4409          89 IDMRRHIRRHTGEKPFKCNF---CFQCFTQNVSLQTHIRIK  126 (305)
Q Consensus        89 ~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~l~~H~~~~  126 (305)
                      ..|..|+++|.+   |.|+.   |++.|.+...|..|++++
T Consensus        47 ~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           47 SRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             HHHHHHHHHHHS---EECCSCSSCCCEESSHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            777777777665   77777   777777777777777664

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=6.8e-15  Score=97.93  Aligned_cols=67  Identities=19%  Similarity=0.434  Sum_probs=59.5

Q ss_pred             CCCcccCC--CcccccCcHHHHHHHH-HhCCCCCccCcc--chhhcCChHHHHHHHHhcCCccccCCCCCCC
Q psy4409         173 SYRYVCMV--CPYHCRQNESMKRHLR-KHTKDKPYECGF--CSLKFSRRDNLRRHLKDQHSYDSFRSSTKKP  239 (305)
Q Consensus       173 ~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~~~~~~c~~c~~  239 (305)
                      .++|.|..  |++.|.+...|..|++ .|.++++|.|++  |++.|.++..|..|++.|+++++|.|..|+.
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k   76 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP   76 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence            36788886  9999999999999998 698999999998  9999999999999999999999999999865

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.5e-15  Score=105.65  Aligned_cols=76  Identities=20%  Similarity=0.294  Sum_probs=67.4

Q ss_pred             HHHHHHHHhhhcCccccCCCCCcccCCCccccc-CcHHHHHHHHHhCC-CCCccCccchhhcCChHHHHHHHHhcCCccc
Q psy4409         154 LKILLQHTKNCKGAFRENDSYRYVCMVCPYHCR-QNESMKRHLRKHTK-DKPYECGFCSLKFSRRDNLRRHLKDQHSYDS  231 (305)
Q Consensus       154 ~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~  231 (305)
                      ...+..|++.|.+.      ++|.|.+|++.|. ....|..|+++|++ +++|.|.+|++.|..+..|..|++.||++++
T Consensus         9 ~~~~~~h~~~h~~~------~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A            9 GGPEEQWQRAIHER------GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             CCSCSHHHHTTTTT------SCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCcHHHHHHHhccC------CCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            34456778888777      8999999999999 99999999999998 8999999999999999999999999999887


Q ss_pred             cCCC
Q psy4409         232 FRSS  235 (305)
Q Consensus       232 ~~c~  235 (305)
                      +...
T Consensus        83 ~~~~   86 (98)
T 2gqj_A           83 SDAE   86 (98)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            5433

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=9.7e-15  Score=100.78  Aligned_cols=78  Identities=18%  Similarity=0.332  Sum_probs=66.3

Q ss_pred             cchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccc-cCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHH-HHhc
Q psy4409         149 PLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHC-RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH-LKDQ  226 (305)
Q Consensus       149 ~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h  226 (305)
                      ..+.....+..|...+.+.      ++|.|+.|++.| .....|..|+++| ++++|.|.+|++.|..++.|..| ++.|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~------~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDK------GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHT------SCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CCCCCchHHHHHHHHhcCC------CCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            4555666777888877776      899999999999 9999999999999 99999999999999999999999 6666


Q ss_pred             CCccccC
Q psy4409         227 HSYDSFR  233 (305)
Q Consensus       227 h~~~~~~  233 (305)
                      .+...|.
T Consensus        87 ~~~p~~~   93 (96)
T 2ctd_A           87 NSLPSGP   93 (96)
T ss_dssp             CCCSSCS
T ss_pred             CCCCCCC
Confidence            5543333

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=9.1e-15  Score=94.92  Aligned_cols=61  Identities=30%  Similarity=0.658  Sum_probs=57.8

Q ss_pred             CCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCcccc
Q psy4409         172 DSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF  232 (305)
Q Consensus       172 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~  232 (305)
                      ..++|.|.+|++.|.....|..|+++|.++++|.|.+|++.|.....|..|++.|+++++.
T Consensus         6 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            3489999999999999999999999999999999999999999999999999999998764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.52  E-value=8.5e-15  Score=90.91  Aligned_cols=55  Identities=36%  Similarity=0.716  Sum_probs=51.0

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      ++|.|+.|++.|.+...|..|+++|.+++||.|++|++.|..+..|..|++.||+
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            7899999999999999999999999999999999999999999999999999884

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=2.1e-14  Score=95.58  Aligned_cols=68  Identities=21%  Similarity=0.506  Sum_probs=50.3

Q ss_pred             ccccCC--CCccchhcHHHHHHHHh-hhcCccccCCCCCcccCC--CcccccCcHHHHHHHHHhCCCCCccCccchhhcC
Q psy4409         140 RIYCTF--CRDPLYNDLKILLQHTK-NCKGAFRENDSYRYVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFS  214 (305)
Q Consensus       140 ~~~C~~--C~~~~~~~~~~l~~h~~-~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  214 (305)
                      +|.|..  |+ +.|.....|..|++ .|.+.      ++|.|+.  |++.|.....|..|+++|+++++|.|.+|++.|.
T Consensus         7 ~~~C~~~~C~-~~f~~~~~L~~H~~~~H~~~------~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            7 GMPCDFPGCG-RIFSNRQYLNHHKKYQHIHQ------KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SEECSSTTTC-CEESSHHHHHHHHHHGGGSC------CCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CccCCCCCCc-CccCCHHHHHHHHHHHhCCC------CCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            344443  44 44444444444444 34444      7899998  9999999999999999999999999999999884

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.2e-14  Score=94.91  Aligned_cols=57  Identities=30%  Similarity=0.512  Sum_probs=54.8

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      ++|.|++|++.|.....|..|+++|.++++|.|++|++.|..+..|..|++.|+++.
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            899999999999999999999999999999999999999999999999999998764

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.50  E-value=2.6e-14  Score=88.70  Aligned_cols=56  Identities=30%  Similarity=0.841  Sum_probs=53.3

Q ss_pred             CcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      ||.|+.|++.|.....|..|+++|.++++|.|++|++.|.+...|..|++.|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            58899999999999999999999999999999999999999999999999998865

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=3.9e-14  Score=93.75  Aligned_cols=67  Identities=24%  Similarity=0.431  Sum_probs=38.3

Q ss_pred             ccccCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccC
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHS   85 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f   85 (305)
                      ..+.++++|.|++|++.|.....|..|+++|.+.                             .+     |.|.+|++.|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------------~~-----~~C~~C~~~f   56 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE-----------------------------KP-----YKCDECGKAF   56 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS-----------------------------CS-----EECSSSCCEE
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCC-----------------------------cC-----eeCCCCCCcc
Confidence            3445556666666666666666666665444321                             11     6666666666


Q ss_pred             CCcHHHHHHHHhhCCCCCeeC
Q psy4409          86 PRSIDMRRHIRRHTGEKPFKC  106 (305)
Q Consensus        86 ~~~~~l~~H~~~h~~~~~~~C  106 (305)
                      .....|..|+++|++++||.|
T Consensus        57 ~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           57 IQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCHHHHHHHHHHhCCCCCCCC
Confidence            666666666666666666655

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.49  E-value=2.4e-14  Score=95.84  Aligned_cols=56  Identities=25%  Similarity=0.521  Sum_probs=52.3

Q ss_pred             CCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       173 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      .++|.|++|++.|.+...|..|+++|++++||.|.+|++.|..+..|.+|+++.|.
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            47899999999999999999999999999999999999999999999999876554

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=2.5e-14  Score=99.35  Aligned_cols=77  Identities=16%  Similarity=0.195  Sum_probs=48.6

Q ss_pred             CCCcHHHHHHHHhhCCCCCeeCCcCccccc-ChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhh
Q psy4409          85 SPRSIDMRRHIRRHTGEKPFKCNFCFQCFT-QNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKN  163 (305)
Q Consensus        85 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~  163 (305)
                      +.....+..|+++|.++++|.|++|++.|. ....|..|+++|+..                                  
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~----------------------------------   51 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKL----------------------------------   51 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHH----------------------------------
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCC----------------------------------
Confidence            444455666777777777777777777777 777777777664320                                  


Q ss_pred             hcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCc
Q psy4409         164 CKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPY  204 (305)
Q Consensus       164 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  204 (305)
                         .      ++|.|.+|++.|.....|..|+++|++++|+
T Consensus        52 ---~------~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A           52 ---Q------DALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             ---H------HHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             ---C------CCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence               0      4556666666666666666666666666553

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=4.5e-14  Score=90.42  Aligned_cols=55  Identities=35%  Similarity=0.644  Sum_probs=52.4

Q ss_pred             CCcccCCCcccccCcHHHHHHHHH-h-CCCCCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRK-H-TKDKPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      ++|.|+.|++.|.+...|..|++. | .++++|.|+.|++.|.+.+.|..|++.+|+
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            899999999999999999999998 7 588999999999999999999999999986

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=6.7e-14  Score=92.59  Aligned_cols=66  Identities=32%  Similarity=0.673  Sum_probs=58.4

Q ss_pred             HHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHH-HhCCC-CCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         159 QHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLR-KHTKD-KPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       159 ~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      .|++.|.++      ++|.|.+|++.|.....|..|++ .|.+. ++|.|++|++.|..+..|..|++.+|+..
T Consensus         5 ~H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            5 SSGRTHSGE------KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCCCSCC------CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             ccccccCCC------CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            466667666      89999999999999999999997 67764 89999999999999999999999988754

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.44  E-value=1.3e-13  Score=92.17  Aligned_cols=55  Identities=25%  Similarity=0.454  Sum_probs=52.4

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      .|.|++|++.|.+...|..|+++|++++||.|++|++.|.....|..|++..|..
T Consensus        28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             TEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             CEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            4999999999999999999999999999999999999999999999999877865

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.44  E-value=1.5e-13  Score=85.17  Aligned_cols=53  Identities=36%  Similarity=0.676  Sum_probs=50.7

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhc
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH  127 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  127 (305)
                      +|.|.+|++.|.+...|..|+++|.+++||.|+.|++.|.....|..|++.+|
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            49999999999999999999999999999999999999999999999999976

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=2.8e-13  Score=93.36  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=56.3

Q ss_pred             ccCCCcHHHHHHHHhhCCCCCeeCCcCcccc-cChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHH
Q psy4409          83 YHSPRSIDMRRHIRRHTGEKPFKCNFCFQCF-TQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHT  161 (305)
Q Consensus        83 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f-~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~  161 (305)
                      ..|.....|..|++.+.++++|.|+.|++.| .+...|..|+++|  +   +                            
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h--~---~----------------------------   60 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC--K---Q----------------------------   60 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH--C---C----------------------------
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH--C---C----------------------------
Confidence            3556677777777777777788888888888 7777787777773  3   1                            


Q ss_pred             hhhcCccccCCCCCcccCCCcccccCcHHHHHH-HHHhCCCCCccC
Q psy4409         162 KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRH-LRKHTKDKPYEC  206 (305)
Q Consensus       162 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C  206 (305)
                                  ++|.|.+|++.|.....|..| +++|++...|.+
T Consensus        61 ------------k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           61 ------------EMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             ------------CCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCSC
T ss_pred             ------------CCeECCCCCCeeCCHHHHHHHhHHhcCCCCCCCC
Confidence                        567777777777777777777 777766544443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=1.5e-13  Score=90.94  Aligned_cols=34  Identities=35%  Similarity=0.737  Sum_probs=20.9

Q ss_pred             CccccccccCCCcccCCCCCCcCcChHHHHhhhh
Q psy4409           1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLK   34 (305)
Q Consensus         1 L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   34 (305)
                      |.+|+++|++++||.|++|++.|.....|..|++
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHH
Confidence            3456666666666666666666666666666654

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=6.7e-14  Score=97.10  Aligned_cols=71  Identities=21%  Similarity=0.539  Sum_probs=49.4

Q ss_pred             cCCCcccCCCCCCcCcChHHHHhhhhh-ccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCCCCccCCC
Q psy4409           9 SGEKPYTCYFCNFKSAHMSSINNHLKI-KHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPR   87 (305)
Q Consensus         9 ~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~C~~~f~~   87 (305)
                      +|++||.|+.|++.|.....|..|++. |.+.                          .+++     +|.|..|++.|..
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~--------------------------~~ek-----pf~C~~Cgk~F~~   62 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV--------------------------VLNS-----SYVCVECNFLTKR   62 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSC--------------------------CCSC-----CEEETTTTEEESS
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC--------------------------CCCC-----CcCCCCCCcccCC
Confidence            467788888888888887777777753 4210                          1112     2788888888888


Q ss_pred             cHHHHHH-HHhhCCCCCeeCCcCc
Q psy4409          88 SIDMRRH-IRRHTGEKPFKCNFCF  110 (305)
Q Consensus        88 ~~~l~~H-~~~h~~~~~~~C~~C~  110 (305)
                      ...|..| +++|.+++||.|.++.
T Consensus        63 ~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           63 YDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             THHHHTHHHHTSTTCCCEEEEECC
T ss_pred             HHHHHHHHHHhcCCCCCeeCCccc
Confidence            8888888 6778888888887643

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.6e-13  Score=86.04  Aligned_cols=55  Identities=47%  Similarity=0.927  Sum_probs=50.5

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      ++|.|+.|++.|.....|..|+++|.++++|.|++|++.|.++..|..|++..|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999999999999999999854443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.42  E-value=1e-13  Score=101.43  Aligned_cols=110  Identities=22%  Similarity=0.286  Sum_probs=52.8

Q ss_pred             ccccCCCcccCCCCCCcCcChHHHHhhhhhccccc-------cceeeehh--hhccchHHHHHhhhccCCCCCCCCCCCc
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK-------IQCRYSIL--KLQSHEESLVQHAKRCSYVPRPNIQFNF   76 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-------~~c~~~~~--~~~~~~~~l~~h~~~~h~~~~~~~~~~~   76 (305)
                      .++.|.++|.|...+....  ..+..|.+.+....       ..|.+.|.  ..+.....|..|+.  |.++++     |
T Consensus         5 ~~~~~~k~~~~~~k~~~~~--~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~--h~~~~~-----~   75 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFIH--VTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLA--SKAISQ-----F   75 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEEE--CCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHHH--HHHHCS-----E
T ss_pred             hhcccccccccccCCeeee--ecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHHH--hCCCCC-----e
Confidence            4688999999987655422  22333332222111       22333333  11112233333431  333333     5


Q ss_pred             ccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHh
Q psy4409          77 TCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIK  126 (305)
Q Consensus        77 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  126 (305)
                      .|.+|++.|.....|..|+++|  ++||.|+.|++.|.....|..|++.+
T Consensus        76 ~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h  123 (129)
T 2wbt_A           76 VCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK  123 (129)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             ECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHH
Confidence            5555555555555555555554  45555555555555555555555553

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=6.9e-13  Score=86.41  Aligned_cols=61  Identities=38%  Similarity=0.638  Sum_probs=55.1

Q ss_pred             ccCCCCCCCCCCCcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcC
Q psy4409          63 RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT  128 (305)
Q Consensus        63 ~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  128 (305)
                      +.|..+++     |.|.+|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|+.
T Consensus         7 ~~H~~~k~-----~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            7 GIHSGEKP-----YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CTTTTCCC-----EECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             cccCCCCC-----ccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            45555555     99999999999999999999999999999999999999999999999999544

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.38  E-value=4.5e-13  Score=87.80  Aligned_cols=52  Identities=35%  Similarity=0.673  Sum_probs=44.1

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHh
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIK  126 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  126 (305)
                      +|.|..|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|
T Consensus        17 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   68 (74)
T 2lce_A           17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH   68 (74)
T ss_dssp             SBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhc
Confidence            4888888888888888888888888888888888888888888888888874

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=4.9e-13  Score=88.61  Aligned_cols=57  Identities=32%  Similarity=0.729  Sum_probs=52.6

Q ss_pred             CCCcccCCCcccccCcHHHHHHHHHhCC---CCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         173 SYRYVCMVCPYHCRQNESMKRHLRKHTK---DKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       173 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      .++|.|.+|++.|.....|..|+++|.+   +++|.|.+|++.|..+..|..|++.+|..
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            3899999999999999999999999986   89999999999999999999999766654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=7.6e-13  Score=91.22  Aligned_cols=62  Identities=18%  Similarity=0.157  Sum_probs=58.3

Q ss_pred             CCcccCCCcccccCcHHHHHHHHH-hCCCCC--------ccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRK-HTKDKP--------YECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      ..+.|..|++.|.....|..|+++ |.++++        |.|.+|++.|..+..|..|+++|+++++|.|.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            457899999999999999999998 988887        99999999999999999999999999999996

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.37  E-value=8.1e-13  Score=81.76  Aligned_cols=53  Identities=26%  Similarity=0.696  Sum_probs=50.6

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcC
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT  128 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  128 (305)
                      |.|..|++.|.+...|..|+++|.++++|.|+.|++.|.+...|..|+++++.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999998543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=6.9e-15  Score=96.28  Aligned_cols=68  Identities=15%  Similarity=0.265  Sum_probs=60.4

Q ss_pred             CccccccccCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCC
Q psy4409           1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLV   80 (305)
Q Consensus         1 L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~   80 (305)
                      |.+|++.|++++||.|++|++.|.....|..                                    ..     +|.|..
T Consensus         6 l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~------------------------------------~~-----~~~C~~   44 (73)
T 2ctu_A            6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR------------------------------------RK-----TPMCEK   44 (73)
T ss_dssp             CCCCCCCCCCCSEEECSSSCCEEECCCCCCC------------------------------------SS-----SCCCHH
T ss_pred             HHHHHHHhCCCCCeeCCcccchhCCHHHhCc------------------------------------CC-----CCCCCC
Confidence            6789999999999999999999998666544                                    11     299999


Q ss_pred             CCccCCCcHHHHHHHHhhCCCCCeeCCcC
Q psy4409          81 CDYHSPRSIDMRRHIRRHTGEKPFKCNFC  109 (305)
Q Consensus        81 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  109 (305)
                      |++.|.....|..|+++|.++++|.|++|
T Consensus        45 C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           45 CRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             HHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            99999999999999999999999999987

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=1.2e-12  Score=84.70  Aligned_cols=55  Identities=31%  Similarity=0.592  Sum_probs=52.3

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      +|.|.+|++.|.....|..|+++|.++++|.|++|++.|.....|..|++++|..
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCC
Confidence            4999999999999999999999999999999999999999999999999997654

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=1.1e-12  Score=82.07  Aligned_cols=55  Identities=36%  Similarity=0.717  Sum_probs=51.3

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      +|.|..|++.|.+...|..|+++|.++++|.|+.|++.|.+...|..|++..|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            4999999999999999999999999999999999999999999999998655765

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=6.7e-13  Score=84.86  Aligned_cols=60  Identities=27%  Similarity=0.568  Sum_probs=52.4

Q ss_pred             cCCCCCCCCCCCcccCCCCccCCCcHHHHHHHHh-h-CCCCCeeCCcCcccccChHHHHHHHHHhcC
Q psy4409          64 CSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRR-H-TGEKPFKCNFCFQCFTQNVSLQTHIRIKHT  128 (305)
Q Consensus        64 ~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  128 (305)
                      .|.++++     |.|..|++.|.+...|..|++. | .++++|.|+.|++.|.+...|..|++.+|.
T Consensus         4 ~h~~~k~-----~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHT-----YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTE-----EECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcc-----eECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            4444555     9999999999999999999987 6 588999999999999999999999999764

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=1.8e-12  Score=84.68  Aligned_cols=55  Identities=33%  Similarity=0.767  Sum_probs=51.6

Q ss_pred             CCCcccC--CCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcC
Q psy4409         173 SYRYVCM--VCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       173 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  227 (305)
                      .++|.|+  .|++.|.....|..|+++|.++++|.|++|++.|...+.|..|++.|+
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            4889997  599999999999999999999999999999999999999999998763

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.5e-12  Score=84.39  Aligned_cols=55  Identities=24%  Similarity=0.571  Sum_probs=51.5

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCC---CCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTG---EKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      +|.|.+|++.|.....|..|+++|.+   +++|.|++|++.|.....|..|++.+|..
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            39999999999999999999999986   89999999999999999999999887876

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.2e-14  Score=95.13  Aligned_cols=68  Identities=15%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             HHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         157 LLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       157 l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |..|++.|.+.      ++|.|.+|++.|.....|..       +++|.|++|++.|...+.|..|++.|+++++|.|+.
T Consensus         6 l~~H~~~h~~~------~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~   72 (73)
T 2ctu_A            6 SGKRQKIHLGD------RSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSS   72 (73)
T ss_dssp             CCCCCCCCCCC------SEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCC
T ss_pred             HHHHHHHhCCC------CCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCC
Confidence            44566677666      89999999999999888876       788999999999999999999999999999999998


Q ss_pred             C
Q psy4409         237 K  237 (305)
Q Consensus       237 c  237 (305)
                      |
T Consensus        73 C   73 (73)
T 2ctu_A           73 G   73 (73)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=3.1e-12  Score=83.47  Aligned_cols=66  Identities=38%  Similarity=0.728  Sum_probs=56.0

Q ss_pred             HHHHHhhhccCCCCCCCCCCCcccC--CCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHH
Q psy4409          55 ESLVQHAKRCSYVPRPNIQFNFTCL--VCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI  125 (305)
Q Consensus        55 ~~l~~h~~~~h~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (305)
                      ..+..|....+.+.++     |.|+  .|++.|.....|..|+++|.++++|.|+.|++.|.....|..|+++
T Consensus         4 ~~~~~~~~~~~~~~~~-----~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G            4 HPMNNLLNYVVPKMRP-----YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             ----CTTSCCCCCCCC-----EECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CCccchhhccCCCCCc-----cCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            3455566666766666     9997  5999999999999999999999999999999999999999999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.8e-12  Score=81.94  Aligned_cols=57  Identities=21%  Similarity=0.380  Sum_probs=50.7

Q ss_pred             CCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc-cchhhcCChHHHHHHHHhcCCccc
Q psy4409         173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG-FCSLKFSRRDNLRRHLKDQHSYDS  231 (305)
Q Consensus       173 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~hh~~~~  231 (305)
                      .++|.|..|++.|. ...|..|+++ ++++||.|+ .|++.|..++.|..|++.|-...+
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            37899999999999 9999999998 899999999 999999999999999988766543

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.6e-12  Score=75.03  Aligned_cols=44  Identities=25%  Similarity=0.305  Sum_probs=32.5

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|++|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            56667777777777777777777777777777777777777765

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.21  E-value=3.1e-12  Score=75.35  Aligned_cols=44  Identities=30%  Similarity=0.389  Sum_probs=28.9

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|.+++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666666654

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.9e-12  Score=74.68  Aligned_cols=44  Identities=20%  Similarity=0.365  Sum_probs=28.3

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34556666666666666666666666666666666666666654

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.3e-12  Score=75.19  Aligned_cols=44  Identities=18%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55666667777777777777777777777777777777777655

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.3e-12  Score=75.19  Aligned_cols=44  Identities=30%  Similarity=0.474  Sum_probs=31.7

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.3e-12  Score=74.68  Aligned_cols=44  Identities=30%  Similarity=0.410  Sum_probs=32.7

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|.+|++.|..++.|..|++.|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56667777777777777777777777777777777777777764

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.20  E-value=3.8e-12  Score=74.93  Aligned_cols=44  Identities=27%  Similarity=0.409  Sum_probs=29.1

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|++|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666666666666666666666666666666666654

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.1e-12  Score=74.81  Aligned_cols=44  Identities=25%  Similarity=0.434  Sum_probs=29.9

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|++|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666677777777777777777777766666667766654

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.9e-12  Score=74.87  Aligned_cols=44  Identities=23%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.4e-12  Score=75.15  Aligned_cols=44  Identities=25%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            55666677777777777777777777777777777777777655

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.2e-12  Score=74.75  Aligned_cols=44  Identities=25%  Similarity=0.467  Sum_probs=33.0

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56667777777777777777777777777777777777777765

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.1e-12  Score=75.34  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56667777777777777777777777777777777777777765

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.20  E-value=3.5e-12  Score=75.08  Aligned_cols=44  Identities=27%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56667777777777777777777777777777777777777765

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.9e-12  Score=74.86  Aligned_cols=44  Identities=23%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666677777777777777777777777777777776654

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.4e-12  Score=74.65  Aligned_cols=44  Identities=27%  Similarity=0.406  Sum_probs=28.7

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666666654

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.3e-12  Score=75.20  Aligned_cols=44  Identities=25%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            55666777777777777777777777777777777777777665

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.20  E-value=3.7e-12  Score=74.97  Aligned_cols=44  Identities=20%  Similarity=0.300  Sum_probs=31.7

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            55667777777777777777777777777777777777777665

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.8e-12  Score=74.47  Aligned_cols=44  Identities=23%  Similarity=0.411  Sum_probs=32.3

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56667777777777777777777777777777777777777765

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.8e-12  Score=74.95  Aligned_cols=44  Identities=20%  Similarity=0.394  Sum_probs=30.1

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            55566666777777777777777777777777777677776654

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.6e-12  Score=74.59  Aligned_cols=44  Identities=23%  Similarity=0.392  Sum_probs=32.1

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.1e-12  Score=74.81  Aligned_cols=44  Identities=27%  Similarity=0.434  Sum_probs=32.0

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|.+|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.5e-12  Score=75.08  Aligned_cols=44  Identities=25%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55666677777777777777777777777777777777777655

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.9e-12  Score=74.87  Aligned_cols=44  Identities=27%  Similarity=0.415  Sum_probs=28.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666666654

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.19  E-value=3.4e-12  Score=75.14  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=32.0

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.9e-12  Score=74.90  Aligned_cols=44  Identities=27%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.19  E-value=1.5e-11  Score=79.87  Aligned_cols=55  Identities=31%  Similarity=0.693  Sum_probs=50.7

Q ss_pred             CCCCcccCC--CcccccCcHHHHHHHHHhCCCCCccCcc--chhhcCChHHHHHHHHhc
Q psy4409         172 DSYRYVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       172 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  226 (305)
                      ..++|.|..  |++.|.....|..|+++|.++++|.|.+  |++.|..+..|..|++.|
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            447899998  9999999999999999999999999976  999999999999998764

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=3.8e-12  Score=74.93  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=31.6

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.5e-12  Score=74.61  Aligned_cols=44  Identities=25%  Similarity=0.286  Sum_probs=31.6

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.7e-12  Score=75.01  Aligned_cols=44  Identities=27%  Similarity=0.435  Sum_probs=31.6

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777654

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=4.1e-12  Score=74.77  Aligned_cols=44  Identities=25%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.7e-12  Score=74.52  Aligned_cols=44  Identities=25%  Similarity=0.480  Sum_probs=28.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666666654

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.4e-12  Score=74.67  Aligned_cols=44  Identities=25%  Similarity=0.390  Sum_probs=30.4

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45566667777777777777777777777777777777777655

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.9e-12  Score=74.46  Aligned_cols=44  Identities=18%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56667777777777777777777777777777777777777765

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.8e-12  Score=74.94  Aligned_cols=44  Identities=27%  Similarity=0.473  Sum_probs=30.5

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|...+.|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            55666667777777777777777777777777777777777654

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.6e-12  Score=74.56  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=29.2

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|.+++.|..|++.|+++++|.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666666654

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5e-12  Score=74.39  Aligned_cols=44  Identities=20%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666666654

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=6.1e-12  Score=74.03  Aligned_cols=44  Identities=16%  Similarity=0.296  Sum_probs=31.2

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|...+.|..|++.|+++++|.|..|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45666777777777777777777777777777777777777665

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.18  E-value=4.8e-12  Score=74.48  Aligned_cols=44  Identities=23%  Similarity=0.340  Sum_probs=31.4

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|++|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=5.1e-12  Score=74.37  Aligned_cols=44  Identities=23%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            45566666667777777777777777777766666666766654

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=5.3e-12  Score=74.29  Aligned_cols=44  Identities=18%  Similarity=0.211  Sum_probs=31.4

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|...+.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55666777777777777777777777777777777777777655

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.6e-12  Score=74.55  Aligned_cols=44  Identities=25%  Similarity=0.352  Sum_probs=31.5

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=6.6e-12  Score=73.87  Aligned_cols=44  Identities=16%  Similarity=0.148  Sum_probs=29.5

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666666776777777666667777666666666666654

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.17  E-value=7.5e-12  Score=73.65  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..+..|..|++.|+++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45667777777777777777777777777777777777777665

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6.1e-12  Score=74.02  Aligned_cols=44  Identities=30%  Similarity=0.416  Sum_probs=34.4

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|.+|++.|..++.|..|++.|+++++|.|+++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66677777888888888888888888888888888888887753

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=5.1e-11  Score=81.87  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             CCeeCCcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchhcHHHHHHHHhhhcCccccCCCCCcccCCC
Q psy4409         102 KPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVC  181 (305)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C  181 (305)
                      ..|.|+.|++.|.+...|..|++.+|..   . .    +..+..|                           ..|.|..|
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~---~-~----~~~~~~c---------------------------~~~~C~~C   68 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVG---G-P----EQNNHVC---------------------------YWEECPRE   68 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTC---C-T----TCSCCCC---------------------------CCTTCSST
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccC---C-C----CCCccce---------------------------eccCCCCC
Confidence            3466777777777777777777764433   1 0    1111111                           23899999


Q ss_pred             cccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         182 PYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       182 ~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      ++.|.....|..|+++|++++||.|.
T Consensus        69 ~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           69 GKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             TCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            99999999999999999999999996

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.9e-12  Score=74.91  Aligned_cols=44  Identities=25%  Similarity=0.418  Sum_probs=27.0

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|.+|++.|..++.|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44556666666666666666666666666666666666666554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=4e-12  Score=74.85  Aligned_cols=44  Identities=23%  Similarity=0.440  Sum_probs=29.2

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|+++++|.|++|++.|..++.|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666666666666666666666666666666666654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=7.1e-12  Score=73.75  Aligned_cols=44  Identities=23%  Similarity=0.331  Sum_probs=28.2

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|.++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            44556666666666666666666666666666666666666654

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.1e-11  Score=73.26  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=30.9

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHH-hcCCccccCCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLK-DQHSYDSFRSSTK  237 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~hh~~~~~~c~~c  237 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++ .|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            5566677777777777777777777777777 6777777777655

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.1e-11  Score=72.91  Aligned_cols=43  Identities=21%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5566777777777777777777777777777777777777765

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.11  E-value=1.1e-11  Score=75.65  Aligned_cols=52  Identities=19%  Similarity=0.348  Sum_probs=47.1

Q ss_pred             cccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccC
Q psy4409         182 PYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFR  233 (305)
Q Consensus       182 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  233 (305)
                      ++.|.....|..|+++|.++++|.|.+|++.|...+.|..|++.|+++++|.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4568888889999999999999999999999999999999999999988874

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.11  E-value=1.6e-11  Score=70.68  Aligned_cols=42  Identities=26%  Similarity=0.494  Sum_probs=29.4

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            345666777777777777777777777777777777777663

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.10  E-value=4.1e-11  Score=70.40  Aligned_cols=44  Identities=25%  Similarity=0.340  Sum_probs=39.7

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGE------KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSS------CSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCC------CceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=5.1e-11  Score=72.61  Aligned_cols=44  Identities=20%  Similarity=0.455  Sum_probs=37.5

Q ss_pred             CCCCcccCCCcccccCcHHHHHHHH-HhCCCCCccCccchhhcCC
Q psy4409         172 DSYRYVCMVCPYHCRQNESMKRHLR-KHTKDKPYECGFCSLKFSR  215 (305)
Q Consensus       172 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~  215 (305)
                      ..++|.|.+|++.|.....|..|++ +|.++++|.|.+|++.|.+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            3478889999999999999999986 8888888999999988875

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.10  E-value=4.1e-11  Score=70.38  Aligned_cols=44  Identities=18%  Similarity=0.316  Sum_probs=39.7

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGE------KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCC------CSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCC------CCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.10  E-value=1.8e-11  Score=72.00  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=33.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..+..|..|++.|.++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777788888888888888888888888888888887764

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.9e-11  Score=71.89  Aligned_cols=43  Identities=26%  Similarity=0.399  Sum_probs=34.6

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            5667788888888888888888888888888888888888764

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.8e-11  Score=71.90  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=33.9

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667777888888888888888888888888888888887764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.8e-11  Score=71.96  Aligned_cols=43  Identities=23%  Similarity=0.370  Sum_probs=33.3

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|...+.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667777778888888888888888888887777777777764

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.3e-11  Score=71.49  Aligned_cols=43  Identities=26%  Similarity=0.441  Sum_probs=34.7

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6667788888888888888888888888888888888888864

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4e-11  Score=70.42  Aligned_cols=44  Identities=23%  Similarity=0.251  Sum_probs=39.8

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|...+.|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGE------RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCC------CSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCC------CCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999988

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.8e-11  Score=71.98  Aligned_cols=43  Identities=23%  Similarity=0.373  Sum_probs=35.0

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|+++++|.|.+|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888888888888888888888888888888888864

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.9e-11  Score=70.03  Aligned_cols=44  Identities=16%  Similarity=0.216  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|...+.|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGE------KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSC------CSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCC------CCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2e-11  Score=71.76  Aligned_cols=43  Identities=30%  Similarity=0.526  Sum_probs=33.6

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777788888888888888888888888888878887764

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.9e-11  Score=69.74  Aligned_cols=43  Identities=16%  Similarity=0.311  Sum_probs=38.6

Q ss_pred             HhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         161 TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       161 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      ++.|.+.      ++|.|.+|++.|...+.|..|+++|.++++|.|.+|
T Consensus         2 ~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGE------KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSC------CCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCC------cCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3455555      899999999999999999999999999999999987

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.1e-11  Score=71.65  Aligned_cols=43  Identities=26%  Similarity=0.410  Sum_probs=34.7

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            5667788888888888888888888888888888888888764

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.1e-11  Score=70.36  Aligned_cols=44  Identities=20%  Similarity=0.306  Sum_probs=39.7

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGE------KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCC------CCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCC------CCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.8e-11  Score=70.50  Aligned_cols=44  Identities=27%  Similarity=0.312  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|...+.|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGE------KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCC------CSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCC------CCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556655      899999999999999999999999999999999988

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4e-11  Score=70.41  Aligned_cols=44  Identities=20%  Similarity=0.309  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|...+.|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGE------NPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSS------CCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCC------cCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.1e-11  Score=69.97  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGE------KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSS------CSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCC------CCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556655      899999999999999999999999999999999987

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.2e-11  Score=71.59  Aligned_cols=43  Identities=21%  Similarity=0.349  Sum_probs=34.5

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            6677788888888888888888888888888888888888764

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2e-11  Score=71.71  Aligned_cols=43  Identities=28%  Similarity=0.443  Sum_probs=34.2

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|+++++|.|.+|++.|..++.|..|++.|.++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667778888888888888888888888888888888888764

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.5e-11  Score=70.20  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGE------KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCC------CSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCC------cCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999988

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.2e-11  Score=70.34  Aligned_cols=44  Identities=27%  Similarity=0.365  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|+.|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGE------KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSS------CSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCC------CCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.3e-11  Score=71.50  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=33.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..+..|..|++.|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777788888888888888888888888888888887764

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.2e-11  Score=70.32  Aligned_cols=44  Identities=25%  Similarity=0.362  Sum_probs=39.7

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGE------KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSC------CSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCC------CCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.3e-11  Score=71.45  Aligned_cols=43  Identities=26%  Similarity=0.434  Sum_probs=34.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667788888888888888888888888888888888888864

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4e-11  Score=70.44  Aligned_cols=44  Identities=27%  Similarity=0.337  Sum_probs=39.5

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGK------KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCC------SSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCC------cCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            44556655      899999999999999999999999999999999987

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.3e-11  Score=71.46  Aligned_cols=43  Identities=26%  Similarity=0.378  Sum_probs=35.4

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888888888888888888888888888888888864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.8e-11  Score=69.56  Aligned_cols=41  Identities=27%  Similarity=0.413  Sum_probs=28.0

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      |+++|.+++||.|.+|++.|..++.|..|++.|.++++|.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34556666777777777777777777777777777666666

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.2e-11  Score=71.61  Aligned_cols=43  Identities=26%  Similarity=0.427  Sum_probs=34.4

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6667788888888888888888888888888888888888764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.8e-11  Score=71.15  Aligned_cols=43  Identities=16%  Similarity=0.271  Sum_probs=33.2

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|.++++|.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667777778888888888888888888887787777777764

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.9e-11  Score=70.49  Aligned_cols=44  Identities=30%  Similarity=0.404  Sum_probs=39.7

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGE------KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCS------SSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCC------CCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999988

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.5e-11  Score=71.32  Aligned_cols=43  Identities=19%  Similarity=0.422  Sum_probs=34.1

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667777888888888888888888888888888888888764

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6e-11  Score=69.65  Aligned_cols=44  Identities=23%  Similarity=0.367  Sum_probs=39.9

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|..|++.|...+.|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGE------KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSC------CSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCC------cCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666      899999999999999999999999999999999987

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.3e-11  Score=71.49  Aligned_cols=43  Identities=23%  Similarity=0.384  Sum_probs=33.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6667777788888888888888888888888888888887764

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.08  E-value=4.3e-11  Score=70.32  Aligned_cols=44  Identities=20%  Similarity=0.293  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|+.|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGE------KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCC------CCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCC------cCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.7e-11  Score=71.22  Aligned_cols=43  Identities=21%  Similarity=0.375  Sum_probs=34.2

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667778888888888888888888888888888888888764

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4e-11  Score=70.45  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|...+.|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGV------KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCC------CSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCC------cCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.9e-11  Score=70.06  Aligned_cols=44  Identities=20%  Similarity=0.325  Sum_probs=39.5

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGE------KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCC------CSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCC------CCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556655      899999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.5e-11  Score=69.80  Aligned_cols=44  Identities=27%  Similarity=0.366  Sum_probs=39.9

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGE------KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCC------CSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCC------CCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45566665      899999999999999999999999999999999988

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.9e-11  Score=70.49  Aligned_cols=44  Identities=18%  Similarity=0.323  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGG------KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSS------CCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCC------CCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566665      899999999999999999999999999999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.3e-11  Score=71.53  Aligned_cols=43  Identities=23%  Similarity=0.373  Sum_probs=34.2

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..+..|..|++.|+++++|.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            5667778888888888888888888888888888888888764

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.5e-11  Score=69.83  Aligned_cols=44  Identities=18%  Similarity=0.169  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|+.|++.|...+.|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGE------KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCC------CSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCC------CCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556655      899999999999999999999999999999999987

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.1e-11  Score=70.18  Aligned_cols=42  Identities=29%  Similarity=0.458  Sum_probs=32.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      |+++|.++++|.|.+|++.|...+.|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            566777778888888888888888888888888777777774

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.3e-11  Score=69.91  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=39.3

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGE------KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCC------CSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCC------CCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44555555      899999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=4.2e-11  Score=70.35  Aligned_cols=44  Identities=18%  Similarity=0.220  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|...+.|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSST------KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCS------CSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCC------CCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556655      899999999999999999999999999999999988

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.3e-11  Score=69.90  Aligned_cols=44  Identities=27%  Similarity=0.379  Sum_probs=39.3

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         3 h~~~h~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGE------KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSC------CSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCC------CCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455555      899999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5e-11  Score=69.99  Aligned_cols=44  Identities=27%  Similarity=0.374  Sum_probs=39.7

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|...+.|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGE------KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSC------CTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCC------cCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999988

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.3e-11  Score=70.28  Aligned_cols=44  Identities=27%  Similarity=0.370  Sum_probs=39.5

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|..|++.|...+.|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGE------KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCC------CCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCC------CCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44556555      899999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5e-11  Score=69.99  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGE------KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCC------CSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCC------CCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556655      899999999999999999999999999999999987

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.4e-11  Score=70.74  Aligned_cols=43  Identities=26%  Similarity=0.379  Sum_probs=33.3

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777778888888888888888888888887777777763

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.4e-11  Score=71.40  Aligned_cols=43  Identities=26%  Similarity=0.423  Sum_probs=33.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            5667777788888888888888888888888888888887764

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.6e-11  Score=71.27  Aligned_cols=43  Identities=28%  Similarity=0.503  Sum_probs=34.7

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6667788888888888888888888888888888888888764

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.07  E-value=5.1e-11  Score=69.96  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=39.7

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGE------KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTS------CCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCC------cCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.07  E-value=4e-11  Score=70.41  Aligned_cols=44  Identities=23%  Similarity=0.271  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|+.|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGV------KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCC------CSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCC------CceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.8e-11  Score=69.72  Aligned_cols=44  Identities=20%  Similarity=0.348  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|...+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGE------KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCC------CSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCC------cCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556655      899999999999999999999999999999999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.4e-11  Score=70.69  Aligned_cols=42  Identities=33%  Similarity=0.494  Sum_probs=32.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            566777778888888888888888888888877777777774

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.8e-11  Score=70.33  Aligned_cols=42  Identities=24%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            566777777777777777777777777777777777777774

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.4e-11  Score=69.87  Aligned_cols=44  Identities=16%  Similarity=0.149  Sum_probs=39.3

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         3 h~~~h~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVE------KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCC------SSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCC------CCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44555555      899999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.6e-11  Score=70.17  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=39.7

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.++      ++|.|.+|++.|...+.|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGE------RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCC------CCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCC------CCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.6e-11  Score=70.16  Aligned_cols=44  Identities=23%  Similarity=0.412  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.++      ++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGE------RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCC------CSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCC------CCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.1e-11  Score=70.40  Aligned_cols=44  Identities=30%  Similarity=0.366  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|+.|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGE------KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCC------SSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCC------CCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44556655      899999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=4.7e-11  Score=70.11  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=39.4

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGE------KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCC------CSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCC------cCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44555555      899999999999999999999999999999999987

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.9e-11  Score=71.02  Aligned_cols=43  Identities=26%  Similarity=0.454  Sum_probs=33.9

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.+++||.|.+|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            6667777888888888888888888888888888888887763

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.8e-11  Score=69.72  Aligned_cols=44  Identities=25%  Similarity=0.334  Sum_probs=39.5

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         3 h~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGE------KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSS------CCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCC------cCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            44556665      899999999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=6.5e-11  Score=69.51  Aligned_cols=44  Identities=16%  Similarity=0.003  Sum_probs=39.4

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSRE------KSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCC------CCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCC------CCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44555555      899999999999999999999999999999999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=5.9e-11  Score=75.65  Aligned_cols=51  Identities=16%  Similarity=0.207  Sum_probs=47.6

Q ss_pred             CCcccCCCCccCCCcHHHHHHHHhhCCCCCeeCC-cCcccccChHHHHHHHHHh
Q psy4409          74 FNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN-FCFQCFTQNVSLQTHIRIK  126 (305)
Q Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~~  126 (305)
                      .+|.|..|++.|. ...|..|+++ .+++||.|+ .|++.|.....|..|+++|
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             CCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            3499999999999 9999999999 999999999 9999999999999999883

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=6.9e-11  Score=69.40  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=39.2

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|...+.|..|+++|++++||.|.+|
T Consensus         3 h~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGE------KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCC------CSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCC------CCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34455555      899999999999999999999999999999999987

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=3.7e-11  Score=69.83  Aligned_cols=42  Identities=19%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      |+++|.+++||.|.+|++.|..+..|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            566677777777777777777777777777777777777763

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.1e-11  Score=69.64  Aligned_cols=44  Identities=25%  Similarity=0.365  Sum_probs=40.0

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGE------KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCC------CSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCC------CCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55666666      899999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.05  E-value=5.7e-11  Score=69.73  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|.....|..|+++|.+++||.|.+|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGE------KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCC------CSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCC------cCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=5.7e-11  Score=69.74  Aligned_cols=44  Identities=16%  Similarity=0.129  Sum_probs=39.5

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|+.|++.|...+.|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGE------KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCC------SSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCC------CCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556655      899999999999999999999999999999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.8e-11  Score=70.55  Aligned_cols=42  Identities=24%  Similarity=0.419  Sum_probs=27.6

Q ss_pred             HHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       196 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      ++|.++++|.|.+|++.|..+..|..|++.|+++++|.|..|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            345666666666666666666666666666666666666654

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5e-11  Score=70.00  Aligned_cols=44  Identities=18%  Similarity=0.280  Sum_probs=39.5

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~h~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGE------KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSC------CSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCC------CCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            44556655      899999999999999999999999999999999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.05  E-value=2e-10  Score=74.46  Aligned_cols=52  Identities=35%  Similarity=0.671  Sum_probs=48.6

Q ss_pred             CCcccCC--CCccCCCcHHHHHHHHhhCCCCCeeCCc--CcccccChHHHHHHHHH
Q psy4409          74 FNFTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRI  125 (305)
Q Consensus        74 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~  125 (305)
                      .+|.|.+  |++.|.....|..|+++|.++++|.|++  |++.|.....|..|+++
T Consensus        16 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             CceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            3499999  9999999999999999999999999975  99999999999999876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4.1e-11  Score=70.37  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=39.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|++|++.|...+.|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGE------KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSC------CSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCC------CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556655      899999999999999999999999999999999988

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.6e-11  Score=70.60  Aligned_cols=43  Identities=30%  Similarity=0.438  Sum_probs=35.0

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888888888888888888888888888888888864

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.8e-11  Score=70.55  Aligned_cols=42  Identities=24%  Similarity=0.400  Sum_probs=25.0

Q ss_pred             HHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       196 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      ++|.++++|.|.+|++.|..++.|..|++.|+++++|.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345555666666666666666666666666666666666554

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.6e-11  Score=69.21  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=35.1

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      ++|.|++|++.|.....|..|+++|.++++|.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            899999999999999999999999999999999988

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.5e-11  Score=69.76  Aligned_cols=41  Identities=22%  Similarity=0.443  Sum_probs=31.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      |+++|.++++|.|++|++.|..++.|..|++.|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            55677777788888888888888888888877777777776

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.04  E-value=9.2e-11  Score=68.84  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=38.6

Q ss_pred             HhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         161 TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       161 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      ++.|.+.      ++|.|.+|++.|.....|..|+++|++++||.|.+|
T Consensus         4 ~~~h~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGV------NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCC------CSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCC------CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4455555      899999999999999999999999999999999987

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4.2e-11  Score=70.35  Aligned_cols=43  Identities=28%  Similarity=0.475  Sum_probs=32.9

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|..+..|..|++.|+++++|.|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4566777778888888888888888888887777777777763

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=3.5e-11  Score=69.20  Aligned_cols=41  Identities=22%  Similarity=0.485  Sum_probs=29.6

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      |+++|.+++||.|.+|++.|..++.|..|++.|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45566777777777777777777777777777777777765

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=4e-11  Score=70.45  Aligned_cols=42  Identities=26%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCC-ccccCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS-YDSFRSS  235 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~-~~~~~c~  235 (305)
                      |+++|.+++||.|.+|++.|...+.|..|++.|.+ +++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            55667777777777777777777777777777777 7777775

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.03  E-value=4.8e-11  Score=68.55  Aligned_cols=41  Identities=22%  Similarity=0.436  Sum_probs=27.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      |+++|.++++|.|.+|++.|..++.|..|++.|+++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            34556666777777777777777777777777777666665

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=4.5e-11  Score=69.47  Aligned_cols=42  Identities=26%  Similarity=0.382  Sum_probs=31.8

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      |+++|.++++|.|.+|++.|...+.|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            566777777777777777777777777777777777777764

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.6e-11  Score=70.66  Aligned_cols=43  Identities=26%  Similarity=0.474  Sum_probs=33.4

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      |+++|.++++|.|.+|++.|...+.|..|++.|+++++|.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777788888888888888888888888887777777763

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.2e-10  Score=68.67  Aligned_cols=44  Identities=32%  Similarity=0.421  Sum_probs=39.4

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHH-HhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLR-KHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|++ +|.+++||.|.+|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGK------KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCC------CSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCC------CCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            44556655      89999999999999999999999 9999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1e-10  Score=68.67  Aligned_cols=44  Identities=20%  Similarity=0.300  Sum_probs=39.2

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGE------KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCC------CSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCC------CCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556665      899999999999999999999999999999999875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=1.7e-10  Score=67.32  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=20.4

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccch
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCS  210 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  210 (305)
                      ++|.|..|++.|.....|..|+++|+++++|.|++||
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4555555555555555555555555555555555553

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.4e-11  Score=69.21  Aligned_cols=41  Identities=22%  Similarity=0.428  Sum_probs=28.6

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      |+++|.+++||.|.+|++.|...+.|..|++.|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45566677777777777777777777777777777776665

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.5e-10  Score=67.94  Aligned_cols=44  Identities=30%  Similarity=0.403  Sum_probs=39.1

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGE------KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCC------CSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCC------CCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556555      899999999999999999999999999999999875

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=1.6e-10  Score=68.54  Aligned_cols=39  Identities=28%  Similarity=0.470  Sum_probs=27.1

Q ss_pred             CCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchh
Q psy4409         173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSL  211 (305)
Q Consensus       173 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  211 (305)
                      .++|.|.+|++.|.....|..|+++|++++||.|.+|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            366777777777777777777777777777777777764

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=8.8e-11  Score=68.22  Aligned_cols=42  Identities=17%  Similarity=0.122  Sum_probs=27.3

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      |+++|.++++|.|.+|++.|...+.|..|++.|.++++|.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            345566666666666666666666666666666666666663

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=4.2e-11  Score=70.34  Aligned_cols=42  Identities=29%  Similarity=0.499  Sum_probs=32.5

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      |+++|.++++|.|.+|++.|..+..|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566777777788888888888778888887777777777775

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=2.7e-10  Score=66.46  Aligned_cols=42  Identities=24%  Similarity=0.603  Sum_probs=39.8

Q ss_pred             HhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCCC
Q psy4409         197 KHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKK  238 (305)
Q Consensus       197 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c~  238 (305)
                      +|+++++|.|.+|++.|..++.|..|++.|+++++|.|+.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            578999999999999999999999999999999999999984

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=3.4e-10  Score=68.86  Aligned_cols=42  Identities=26%  Similarity=0.499  Sum_probs=38.3

Q ss_pred             CCcccCCCCccCCCcHHHHHHHH-hhCCCCCeeCCcCcccccC
Q psy4409          74 FNFTCLVCDYHSPRSIDMRRHIR-RHTGEKPFKCNFCFQCFTQ  115 (305)
Q Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~  115 (305)
                      .+|.|.+|++.|.....|..|++ +|.+++||.|++|++.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            34999999999999999999987 8999999999999999975

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=5.3e-11  Score=69.18  Aligned_cols=41  Identities=29%  Similarity=0.364  Sum_probs=29.1

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      |+++|.++++|.|.+|++.|...+.|..|++.|+++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            55666777777777777777777777777777777777766

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.1e-10  Score=67.79  Aligned_cols=41  Identities=24%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      |+++|.++++|.|.+|++.|...+.|..|++.|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            56677777778888888888777788888777777777765

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.1e-10  Score=67.29  Aligned_cols=42  Identities=14%  Similarity=0.179  Sum_probs=30.0

Q ss_pred             HHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCC
Q psy4409         195 LRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSST  236 (305)
Q Consensus       195 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~  236 (305)
                      +++|.++++|.|.+|++.|..++.|..|++.|+++++|.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            345667777777777777777777777777777777777753

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=3.9e-10  Score=65.06  Aligned_cols=39  Identities=31%  Similarity=0.469  Sum_probs=23.0

Q ss_pred             HhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         197 KHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       197 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      +|+++++|.|..|++.|..++.|..|++.|+++++|.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            345555666666666666666666666666666666554

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=3.8e-10  Score=66.80  Aligned_cols=41  Identities=20%  Similarity=0.336  Sum_probs=39.0

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCCC
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKK  238 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c~  238 (305)
                      |.++++|.|.+|++.|.....|..|++.|+++++|.|.+|+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            57789999999999999999999999999999999999995

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.95  E-value=3.5e-10  Score=64.85  Aligned_cols=41  Identities=20%  Similarity=0.428  Sum_probs=36.5

Q ss_pred             HhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         161 TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       161 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      ++.|.+.      ++|.|+.|++.|...+.|..|+++|.++++|.|+
T Consensus         2 ~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            2 SSGSSGE------NPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CSSSSSC------CSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCC------CCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            3455555      8999999999999999999999999999999995

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=3.7e-10  Score=66.20  Aligned_cols=43  Identities=26%  Similarity=0.400  Sum_probs=38.3

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQ------RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCS------SSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCC------cCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            45566665      89999999999999999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.93  E-value=4.2e-10  Score=65.96  Aligned_cols=43  Identities=21%  Similarity=0.322  Sum_probs=38.1

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGE------KPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC------CSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCC------CCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45556655      89999999999999999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.6e-10  Score=67.39  Aligned_cols=40  Identities=33%  Similarity=0.484  Sum_probs=27.6

Q ss_pred             HHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCC
Q psy4409         196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS  235 (305)
Q Consensus       196 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~  235 (305)
                      ++|.++++|.|.+|++.|..+..|..|++.|+++++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            3466667777777777777777777777777777777665

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.2e-10  Score=66.43  Aligned_cols=36  Identities=33%  Similarity=0.433  Sum_probs=35.0

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      ++|.|.+|++.|.....|..|+++|.+++||.|.+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            899999999999999999999999999999999987

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.6e-10  Score=65.74  Aligned_cols=43  Identities=26%  Similarity=0.434  Sum_probs=38.1

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~------~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGE------KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSC------CSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCC------cCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45556655      89999999999999999999999999999999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5.8e-10  Score=63.90  Aligned_cols=41  Identities=22%  Similarity=0.421  Sum_probs=36.3

Q ss_pred             HhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         161 TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       161 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      ++.|.++      ++|.|.+|++.|...+.|..|+++|.++++|.|.
T Consensus         2 ~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            2 SSGSSGE------KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CSSSCSC------CSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCcCCC------CCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3455555      8999999999999999999999999999999984

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.2e-10  Score=66.45  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=35.4

Q ss_pred             CCCcccCCCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       173 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      .++|.|.+|++.|.....|..|+++|++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3899999999999999999999999999999999987

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.5e-10  Score=65.80  Aligned_cols=43  Identities=23%  Similarity=0.342  Sum_probs=38.1

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGE------KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCC------CCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCC------CCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            45556655      89999999999999999999999999999999974

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.92  E-value=1.7e-10  Score=72.38  Aligned_cols=54  Identities=11%  Similarity=0.344  Sum_probs=43.1

Q ss_pred             CccccccccCCCcccCCCCCCcCcChHHHHhhhhhccccccceeeehhhhccchHHHHHhhhccCCCCCCCCCCCcccCC
Q psy4409           1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLV   80 (305)
Q Consensus         1 L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~c~~~~~~~~~~~~~l~~h~~~~h~~~~~~~~~~~~C~~   80 (305)
                      |..|+++|++++||.|+.|++.|.....|.   ++|.+                             +.+     |.|.+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~-----------------------------~k~-----~~C~~   44 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPM-----------------------------TGT-----FRCTF   44 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETT-----------------------------TTE-----EBCSS
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCC-----------------------------CCC-----EECCC
Confidence            678999999999999999999999877664   34433                             233     99999


Q ss_pred             CCccCCCcHHH
Q psy4409          81 CDYHSPRSIDM   91 (305)
Q Consensus        81 C~~~f~~~~~l   91 (305)
                      |++.|.....+
T Consensus        45 C~k~f~~~~~~   55 (62)
T 1vd4_A           45 CHTEVEEDESA   55 (62)
T ss_dssp             SCCBCEECTTC
T ss_pred             CCCccccCccc
Confidence            99999876543

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4e-10  Score=66.06  Aligned_cols=43  Identities=23%  Similarity=0.355  Sum_probs=38.1

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGE------RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCC------CCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCC------CCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45556655      89999999999999999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.7e-10  Score=65.73  Aligned_cols=43  Identities=16%  Similarity=0.324  Sum_probs=37.9

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGE------NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSC------CSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCC------CCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44556555      89999999999999999999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.5e-10  Score=65.81  Aligned_cols=43  Identities=28%  Similarity=0.353  Sum_probs=38.0

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGE------KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC------CSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCC------cCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            44556555      89999999999999999999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.3e-10  Score=65.89  Aligned_cols=43  Identities=23%  Similarity=0.363  Sum_probs=38.1

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGE------KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCC------CSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCC------cCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            45556655      89999999999999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=5.8e-10  Score=65.29  Aligned_cols=43  Identities=21%  Similarity=0.314  Sum_probs=38.0

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGE------KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSC------CSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCC------CCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45556655      89999999999999999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=6.6e-10  Score=65.08  Aligned_cols=43  Identities=26%  Similarity=0.343  Sum_probs=37.9

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         3 h~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGK------KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSS------CCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCC------CCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44555555      89999999999999999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.4e-10  Score=65.46  Aligned_cols=43  Identities=23%  Similarity=0.346  Sum_probs=38.1

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~------~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGE------RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSC------CCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCC------CCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            45556665      89999999999999999999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.3e-10  Score=65.51  Aligned_cols=43  Identities=28%  Similarity=0.407  Sum_probs=38.1

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGG------KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSS------CSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCC------CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            45556665      89999999999999999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.1e-10  Score=65.57  Aligned_cols=43  Identities=28%  Similarity=0.363  Sum_probs=37.8

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGE------KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCC------CTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCC------cCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            44555555      89999999999999999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.2e-10  Score=65.53  Aligned_cols=43  Identities=21%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGE------KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCC------CSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCC------CCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44555555      89999999999999999999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=4.6e-10  Score=63.98  Aligned_cols=38  Identities=18%  Similarity=0.368  Sum_probs=26.2

Q ss_pred             HhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         197 KHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       197 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      +|.++++|.|++|++.|..++.|..|++.|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            45666677777777777777777777777777666665

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=6.1e-10  Score=65.24  Aligned_cols=43  Identities=26%  Similarity=0.387  Sum_probs=37.9

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGE------KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCS------SSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCC------cCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            45556655      89999999999999999999999999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=7.2e-10  Score=64.93  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=37.4

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGK------KPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCS------CSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCC------CCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            44555555      8999999999999999999999999999999997

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.2e-10  Score=67.13  Aligned_cols=42  Identities=31%  Similarity=0.578  Sum_probs=27.2

Q ss_pred             HHhCCCCCccCc--cchhhcCChHHHHHHHHhcCCccccCCCCC
Q psy4409         196 RKHTKDKPYECG--FCSLKFSRRDNLRRHLKDQHSYDSFRSSTK  237 (305)
Q Consensus       196 ~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c  237 (305)
                      ++|.++++|.|.  .|++.|..+..|..|++.|.++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455666666665  566666666666666666666666666654

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.8e-10  Score=65.34  Aligned_cols=43  Identities=28%  Similarity=0.401  Sum_probs=37.9

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGE------KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCC------CCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCC------CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44556555      89999999999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.1e-10  Score=65.56  Aligned_cols=43  Identities=28%  Similarity=0.427  Sum_probs=38.0

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|...+.|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGE------KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSC------CSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCC------cCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            44556655      89999999999999999999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6.3e-10  Score=65.16  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=38.0

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGE------KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCS------CCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCC------CCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45556655      89999999999999999999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.7e-10  Score=65.39  Aligned_cols=43  Identities=21%  Similarity=0.371  Sum_probs=37.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|++++||.|++
T Consensus         3 h~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGE------KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSC------CSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCC------cccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            34455555      89999999999999999999999999999999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6e-10  Score=65.25  Aligned_cols=43  Identities=26%  Similarity=0.369  Sum_probs=37.9

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~------~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGE------KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC------CCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCC------CCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44556555      89999999999999999999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.3e-10  Score=64.90  Aligned_cols=43  Identities=23%  Similarity=0.347  Sum_probs=38.1

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|++|++.|.....|..|+++|+++++|.|+.
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGE------KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSC------CSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCC------CCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45556665      89999999999999999999999999999999973

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.2e-10  Score=64.20  Aligned_cols=42  Identities=26%  Similarity=0.396  Sum_probs=37.3

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGM------KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSS------SSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCC------cCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            45556665      8999999999999999999999999999999985

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.6e-10  Score=64.09  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=37.3

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGE------KPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCC------CSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCC------CCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            44556655      8999999999999999999999999999999985

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.2e-10  Score=64.67  Aligned_cols=42  Identities=17%  Similarity=0.294  Sum_probs=37.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGE------KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSC------CCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCC------CCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            45556665      8999999999999999999999999999999996

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=9.8e-10  Score=63.64  Aligned_cols=42  Identities=19%  Similarity=0.351  Sum_probs=37.3

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.++      ++|.|..|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGE------NPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCC------CSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCC------CCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            45556655      8999999999999999999999999999999985

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.87  E-value=1.2e-10  Score=73.20  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=27.1

Q ss_pred             HHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCCCC
Q psy4409         193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKP  239 (305)
Q Consensus       193 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c~~  239 (305)
                      .|+++|.+++||.|+.|++.|.....|.   +.|.++++|.|..|+.
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k   47 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHT   47 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCC
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCC
Confidence            3555666666666666666666655554   5566666666666644

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.9e-10  Score=64.29  Aligned_cols=42  Identities=17%  Similarity=0.354  Sum_probs=37.5

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.+.      ++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGE------NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSC------CSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCC------cCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            45566665      8999999999999999999999999999999995

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=7.6e-10  Score=64.80  Aligned_cols=43  Identities=16%  Similarity=0.181  Sum_probs=37.8

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCC-CCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTK-DKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+ ++||.|++
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKE------KCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCS------CCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCC------CCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44555555      899999999999999999999999999 99999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.87  E-value=1.8e-09  Score=59.90  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=33.7

Q ss_pred             cccccccCCCcccCCCCCCcCcChHHHHhhhhhccc
Q psy4409           3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus         3 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      .|+++|++++||.|+.|++.|.....|..|+++|.+
T Consensus         1 ~H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            388999999999999999999999999999999875

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.85  E-value=1.2e-09  Score=62.59  Aligned_cols=40  Identities=23%  Similarity=0.383  Sum_probs=35.7

Q ss_pred             HhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccC
Q psy4409         161 TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC  206 (305)
Q Consensus       161 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  206 (305)
                      ++.|.+.      ++|.|..|++.|...+.|..|+++|++++||.|
T Consensus         3 ~~~H~~~------~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGE------TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSCCCSS------CCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CccCCCC------CCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            4455555      899999999999999999999999999999988

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=7.9e-10  Score=64.73  Aligned_cols=43  Identities=19%  Similarity=0.321  Sum_probs=37.8

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      |++.|.+.      ++|.|.+|++.|.....|..|+++|.++++|.|++
T Consensus         3 h~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGE------RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCC------CSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCcCCCCC------CCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44555555      89999999999999999999999999999999973

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.4e-09  Score=62.92  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=32.8

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      ++|.|.+|++.|.....|..|+++|++++||.|+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            8999999999999999999999999999999985

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=9.8e-10  Score=63.64  Aligned_cols=42  Identities=17%  Similarity=0.318  Sum_probs=37.2

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.+.      ++|.|..|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTR------KRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCC------SSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCC------CCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            44556555      8999999999999999999999999999999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.2e-09  Score=63.90  Aligned_cols=34  Identities=29%  Similarity=0.514  Sum_probs=33.0

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      ++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            8999999999999999999999999999999996

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.3e-09  Score=61.33  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=34.8

Q ss_pred             cccccccCCCcccCCCCCCcCcChHHHHhhhhhccccc
Q psy4409           3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus         3 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      +|+++|++++||.|++|++.|.....|..|+++|.++.
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   38 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG   38 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCS
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCC
Confidence            58999999999999999999999999999998887654

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=9.6e-10  Score=62.98  Aligned_cols=41  Identities=29%  Similarity=0.532  Sum_probs=36.0

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccC
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC  206 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  206 (305)
                      |++.|.++      ++|.|..|++.|...+.|..|+++|++++||.|
T Consensus         2 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGE------KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSS------CCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCC------CCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            34455555      899999999999999999999999999999988

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.1e-09  Score=64.05  Aligned_cols=42  Identities=24%  Similarity=0.319  Sum_probs=37.5

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.+.      ++|.|+.|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGE------KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCC------CSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCC------CCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45556655      8999999999999999999999999999999996

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=9.4e-10  Score=63.00  Aligned_cols=41  Identities=22%  Similarity=0.361  Sum_probs=36.3

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccC
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC  206 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  206 (305)
                      |++.|.++      ++|.|..|++.|.....|..|+++|.+++||.|
T Consensus         2 H~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGE------KPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSS------CSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCC------CCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            34455555      899999999999999999999999999999988

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1e-09  Score=64.25  Aligned_cols=42  Identities=21%  Similarity=0.388  Sum_probs=37.6

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.++      ++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGE------KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCC------CSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCC------CCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45556665      8999999999999999999999999999999996

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=3.5e-09  Score=60.91  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=33.9

Q ss_pred             CCCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       173 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      .++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            389999999999999999999999999999999974

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.3e-09  Score=63.11  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=37.1

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.++      ++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~------~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDS------KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCC------CCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCC------CCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44555555      8999999999999999999999999999999984

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=4.2e-10  Score=75.78  Aligned_cols=63  Identities=14%  Similarity=0.266  Sum_probs=52.5

Q ss_pred             HHHhCCCCCccCccchhhcCChHHHHHHHHhcCCccccCCCCCCCCCCceeeecCCccccceecCCCCCCC
Q psy4409         195 LRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNISTMRVTSPSSQEL  265 (305)
Q Consensus       195 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c~~c~~~~~~~~~~~~~~~~h~~~~~~~~~~~  265 (305)
                      .++|.++++|.|++|++.|...+.|..|++.|+++++|.|..+.        ....|.+|.+.+.....+.
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~--------~~~~~~~~~~~~~~~~~~~   79 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE--------RRKQLLSKQKYADGAFADF   79 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS--------CCCCCCCCCCCCCCSSSCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh--------hHHHHHhhhcccccccccc
Confidence            45688999999999999999999999999999999999998763        4557788888777665443

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=3.8e-09  Score=61.74  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=33.5

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      ++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            89999999999999999999999999999999963

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2e-09  Score=63.53  Aligned_cols=36  Identities=22%  Similarity=0.455  Sum_probs=34.7

Q ss_pred             CCcccC--CCcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         174 YRYVCM--VCPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       174 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      ++|.|.  .|++.|.....|..|+++|.+++||.|.+|
T Consensus        11 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A           11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            899998  899999999999999999999999999987

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=1.9e-09  Score=70.33  Aligned_cols=47  Identities=21%  Similarity=0.403  Sum_probs=25.1

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHH
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI  125 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (305)
                      +.|..|++.|. ...|..|+ .+.+.+|+.|+.|++.|. ...|..|+++
T Consensus        18 ~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~   64 (75)
T 2d9k_A           18 AVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEV   64 (75)
T ss_dssp             EECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHH
T ss_pred             cCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHH
Confidence            55555555552 45555555 555555555555555544 3455555555

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=3e-09  Score=61.54  Aligned_cols=42  Identities=19%  Similarity=0.211  Sum_probs=36.9

Q ss_pred             HHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         160 HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       160 h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |++.|.+.      ++|.|.+|++.|...+.|..|+++|++++||.|.
T Consensus         3 H~~~H~~~------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGE------KPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCC------CSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCC------cCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            45556655      8999999999999999999999999999999873

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.8e-09  Score=61.98  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=33.4

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCcc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF  208 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  208 (305)
                      ++|.|.+|++.|.....|..|+++|.++++|.|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             cCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            89999999999999999999999999999999973

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.74  E-value=6.3e-09  Score=58.40  Aligned_cols=37  Identities=19%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      |.++++|.|.+|++.|...+.|..|++.|+++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            3455566666666666666666666666666665543

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=4.6e-10  Score=73.27  Aligned_cols=53  Identities=19%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      +++.|..|++.|. ...|..|+ .|.+.+||.|+.|++.|. ...|..|+..+.++
T Consensus        16 r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A           16 RLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             cccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            6777777777774 77777777 677777777777777765 47777777766654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.72  E-value=3.2e-09  Score=58.83  Aligned_cols=35  Identities=37%  Similarity=0.550  Sum_probs=28.5

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      |+++|.+++||.|+.|++.|..++.|..|++.|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            56678888888888888888888888888887765

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.70  E-value=2e-09  Score=65.37  Aligned_cols=51  Identities=18%  Similarity=0.182  Sum_probs=43.3

Q ss_pred             cchhcHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCcc
Q psy4409         149 PLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYE  205 (305)
Q Consensus       149 ~~~~~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  205 (305)
                      +.|.....|..|++.|.+.      ++|.|..|++.|...+.|..|+++|++++||.
T Consensus         4 k~~~~~~~l~~h~~~H~~~------k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSE------QPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSS------CCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHHHhcCCC------CCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4455556677788888877      89999999999999999999999999999873

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=4e-09  Score=58.43  Aligned_cols=35  Identities=23%  Similarity=0.532  Sum_probs=24.9

Q ss_pred             HHhCCCCCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       196 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      ++|.++++|.|..|++.|..++.|..|++.|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            35667777777777777777777777777776654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1e-08  Score=56.68  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=32.7

Q ss_pred             cccccCCCcccCCCCCCcCcChHHHHhhhhhccccc
Q psy4409           5 LRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus         5 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      +++|++++||.|+.|++.|.....|..|+++|+++.
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            367999999999999999999999999999988753

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.64  E-value=1.3e-08  Score=55.37  Aligned_cols=33  Identities=27%  Similarity=0.574  Sum_probs=22.6

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      |.++++|.|.+|++.|..++.|..|++.|++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            556667777777777777777777777666654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.8e-08  Score=57.18  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=31.0

Q ss_pred             ccCCCCCCCCCCCcccCCCCccCCCcHHHHHHHHhhCCCCCeeC
Q psy4409          63 RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKC  106 (305)
Q Consensus        63 ~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  106 (305)
                      +.|.++++     |.|.+|++.|.....|..|+++|.+++||.|
T Consensus         3 ~~h~~~k~-----~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRV-----YECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCC-----EECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCC-----eECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            34555555     8888888888888888888888888888877

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.60  E-value=2e-08  Score=54.71  Aligned_cols=33  Identities=27%  Similarity=0.561  Sum_probs=22.0

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      |.++++|.|.+|++.|..++.|..|++.|++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            556666777777777777777777766666544

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.59  E-value=2.9e-08  Score=54.06  Aligned_cols=33  Identities=24%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             cccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           7 KHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +|++++||.|++|++.|.....|..|+++|.++
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            478999999999999999999999999998765

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.58  E-value=2.8e-08  Score=54.05  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=30.6

Q ss_pred             cccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           7 KHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +|+++++|.|++|++.|.....|..|++.|+++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            478999999999999999999999999998865

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.58  E-value=4.1e-08  Score=61.19  Aligned_cols=39  Identities=26%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             CCCCCccCcc--chhhcCChHHHHHHH-HhcCCccccCCCCC
Q psy4409         199 TKDKPYECGF--CSLKFSRRDNLRRHL-KDQHSYDSFRSSTK  237 (305)
Q Consensus       199 ~~~~~~~C~~--C~~~f~~~~~l~~H~-~~hh~~~~~~c~~c  237 (305)
                      .+++||.|..  |++.|...+.|..|+ ++|.+++||.|..-
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~   64 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEV   64 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccc
Confidence            5778888865  888888888888886 56888888887754

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.57  E-value=3.5e-08  Score=52.97  Aligned_cols=30  Identities=17%  Similarity=0.475  Sum_probs=16.0

Q ss_pred             CcccCCCcccccCcHHHHHHHHHhCCCCCc
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPY  204 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  204 (305)
                      +|.|..|++.|...+.|..|+++|+++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            445555555555555555555555555544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.57  E-value=5e-08  Score=52.36  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=30.3

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcCCccccCC
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRS  234 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~c  234 (305)
                      +||.|..|++.|...+.|..|++.|.++++|..
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            579999999999999999999999999998863

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=3.1e-08  Score=54.89  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=30.2

Q ss_pred             cccCCCcccCCC--CCCcCcChHHHHhhhhhcccc
Q psy4409           7 KHSGEKPYTCYF--CNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         7 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      .+++++||.|+.  |++.|.....|..|+++|.+.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            578999999986  999999999999999999764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=2.4e-08  Score=55.24  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=31.3

Q ss_pred             cccccCCCcccCCCCCCcCcChHHHHhh-hhhcccc
Q psy4409           5 LRKHSGEKPYTCYFCNFKSAHMSSINNH-LKIKHLE   39 (305)
Q Consensus         5 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~   39 (305)
                      +++|++++||.|+.|++.|.....|..| ++.|.+.
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            3679999999999999999999999999 8887653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=3.5e-08  Score=54.11  Aligned_cols=34  Identities=24%  Similarity=0.595  Sum_probs=31.4

Q ss_pred             ccccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +.|++++||.|++|++.|.....|..|+++|.++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            4689999999999999999999999999998764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=3.8e-08  Score=53.96  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=31.2

Q ss_pred             ccccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +.|++++||.|++|++.|.....|..|+++|.++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            4688999999999999999999999999998764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=3.2e-08  Score=54.66  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=31.3

Q ss_pred             ccccCCCcccCCCCCCcCcCh-HHHHhhhhhcccc
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHM-SSINNHLKIKHLE   39 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~   39 (305)
                      ++|++++||.|+.|++.|... ..|..|+++|.++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            578999999999999999999 9999999998764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.53  E-value=6.1e-08  Score=54.19  Aligned_cols=34  Identities=21%  Similarity=0.491  Sum_probs=31.8

Q ss_pred             CCCcccCCCcccccCcHHHHHHHHHhCCCCCccC
Q psy4409         173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC  206 (305)
Q Consensus       173 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  206 (305)
                      .++|.|..|++.|...+.|..|+++|++++||.+
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            3899999999999999999999999999999876

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=4.5e-08  Score=53.60  Aligned_cols=34  Identities=35%  Similarity=0.583  Sum_probs=31.3

Q ss_pred             ccccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      .+|++++||.|++|++.|.....|..|+++|.++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            4689999999999999999999999999998764

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=8.5e-08  Score=52.45  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             cccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           7 KHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      .|+++++|.|++|++.|.....|..|+++|.++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            688999999999999999999999999998765

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=7.6e-08  Score=53.31  Aligned_cols=31  Identities=19%  Similarity=0.353  Sum_probs=18.0

Q ss_pred             hCCCCCccCcc--chhhcCChHHHHHHHHhcCC
Q psy4409         198 HTKDKPYECGF--CSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       198 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +.+++||.|+.  |++.|..++.|..|+++|++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            34555666654  66666666666666665554

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.46  E-value=1.5e-07  Score=58.66  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=33.0

Q ss_pred             CCCCcccCC--CcccccCcHHHHHHH-HHhCCCCCccCcc
Q psy4409         172 DSYRYVCMV--CPYHCRQNESMKRHL-RKHTKDKPYECGF  208 (305)
Q Consensus       172 ~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~  208 (305)
                      ..+||.|..  |++.|...+.|..|+ ++|++++||.|..
T Consensus        24 GEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           24 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            349999975  999999999999997 6899999999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=8.4e-08  Score=52.47  Aligned_cols=32  Identities=31%  Similarity=0.593  Sum_probs=20.6

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      |.+++||.|.+|++.|...+.|..|++.|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            55566666666666666666666666666553

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.45  E-value=7.2e-08  Score=52.59  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=17.0

Q ss_pred             CCCCCccCccchhhcCChHHHHHHH
Q psy4409         199 TKDKPYECGFCSLKFSRRDNLRRHL  223 (305)
Q Consensus       199 ~~~~~~~C~~C~~~f~~~~~l~~H~  223 (305)
                      .+++||.|+.|++.|..++.|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4566677777777777777777666

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=9.9e-08  Score=52.21  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=30.4

Q ss_pred             cccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           7 KHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      .|.+++||.|++|++.|.....|..|+++|.++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            578899999999999999999999999998764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.44  E-value=6e-08  Score=56.80  Aligned_cols=38  Identities=16%  Similarity=0.272  Sum_probs=33.8

Q ss_pred             ccccccccCCCcccCC--CCCCcCcChHHHHhhhhhcccc
Q psy4409           2 RRHLRKHSGEKPYTCY--FCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         2 ~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      ..|...|++++||.|+  .|++.|.....|..|+++|.++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            4567789999999996  7999999999999999998764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=3.8e-08  Score=54.37  Aligned_cols=33  Identities=18%  Similarity=0.473  Sum_probs=23.7

Q ss_pred             HHhCCCCCccCccchhhcCChHHHHHH-HHhcCC
Q psy4409         196 RKHTKDKPYECGFCSLKFSRRDNLRRH-LKDQHS  228 (305)
Q Consensus       196 ~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~hh~  228 (305)
                      ++|.+++||.|..|++.|..++.|..| ++.|.+
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            356777777777777777777777777 666654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.43  E-value=9e-08  Score=56.31  Aligned_cols=34  Identities=21%  Similarity=0.472  Sum_probs=29.6

Q ss_pred             cccCCCcccCCCCCCcCcChHHHHhhhh-hccccc
Q psy4409           7 KHSGEKPYTCYFCNFKSAHMSSINNHLK-IKHLEK   40 (305)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~   40 (305)
                      +|++++||.|.+|++.|.....|..|++ +|.++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            4889999999999999999999999999 887764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.43  E-value=1e-07  Score=52.90  Aligned_cols=35  Identities=29%  Similarity=0.568  Sum_probs=20.6

Q ss_pred             hCCCCCccCc--cchhhcCChHHHHHHHHhcCCcccc
Q psy4409         198 HTKDKPYECG--FCSLKFSRRDNLRRHLKDQHSYDSF  232 (305)
Q Consensus       198 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~hh~~~~~  232 (305)
                      |+++++|.|.  .|++.|...+.|..|++.|.++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3455566666  3666666666666666666655554

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.3e-07  Score=51.68  Aligned_cols=32  Identities=22%  Similarity=0.648  Sum_probs=21.1

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      |.+++||.|.+|++.|...+.|..|++.|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            55666667777777776666777776666553

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=6.3e-08  Score=53.41  Aligned_cols=33  Identities=18%  Similarity=0.593  Sum_probs=20.7

Q ss_pred             HhCCCCCccCccchhhcCCh-HHHHHHHHhcCCc
Q psy4409         197 KHTKDKPYECGFCSLKFSRR-DNLRRHLKDQHSY  229 (305)
Q Consensus       197 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~hh~~  229 (305)
                      +|.+++||.|+.|++.|..+ +.|..|++.|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            35566666666666666666 6666666665543

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.3e-07  Score=51.72  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=18.3

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      |.++++|.|.+|++.|..+..|..|++.|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            44555566666666666666666665555543

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.3e-07  Score=51.77  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=20.9

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      |.+++||.|.+|++.|..++.|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            45566666766776676666666666666543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.9e-07  Score=51.00  Aligned_cols=31  Identities=23%  Similarity=0.579  Sum_probs=17.9

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      |.++++|.|++|++.|.....|..|++.|++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            3445556666666666666666666655554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.37  E-value=6.6e-08  Score=64.93  Aligned_cols=38  Identities=21%  Similarity=0.336  Sum_probs=33.5

Q ss_pred             cccccccCCCcccCCCCCCcCcChHHHHhhhhhccccc
Q psy4409           3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus         3 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      .|.++|++++||.|++|++.|.....|..|+++|.++.
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ek   52 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEF   52 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCC
Confidence            35567999999999999999999999999999887654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.36  E-value=1.7e-07  Score=55.13  Aligned_cols=34  Identities=26%  Similarity=0.675  Sum_probs=26.6

Q ss_pred             HhCCCCCccCccchhhcCChHHHHHHHH-hcCCcc
Q psy4409         197 KHTKDKPYECGFCSLKFSRRDNLRRHLK-DQHSYD  230 (305)
Q Consensus       197 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~hh~~~  230 (305)
                      +|+++++|.|.+|++.|..+..|..|++ .|.++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            4778888999999999988889999988 777654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.30  E-value=3.1e-07  Score=50.57  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             cccCCCcccCCC--CCCcCcChHHHHhhhhhcccc
Q psy4409           7 KHSGEKPYTCYF--CNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         7 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      .|++++||.|.+  |++.|.....|..|+++|.++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            478999999995  999999999999999998764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.25  E-value=4.4e-07  Score=45.91  Aligned_cols=27  Identities=33%  Similarity=0.806  Sum_probs=24.8

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      ++||.|+.|++.|.....|..|+++|.
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            479999999999999999999998873

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.25  E-value=4.9e-07  Score=46.12  Aligned_cols=28  Identities=18%  Similarity=0.539  Sum_probs=25.5

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      ++||.|+.|++.|.....|..|+++|.+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4799999999999999999999988753

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.23  E-value=6.2e-07  Score=46.42  Aligned_cols=29  Identities=28%  Similarity=0.555  Sum_probs=26.7

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      ++||.|+.|++.|.....|..|+++|.++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            47999999999999999999999998764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.23  E-value=5.1e-07  Score=49.67  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=18.7

Q ss_pred             hCCCCCccCcc--chhhcCChHHHHHHHHhcCCc
Q psy4409         198 HTKDKPYECGF--CSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       198 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      |+++++|.|.+  |++.|..++.|..|++.|.++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            44556666653  666666666666666655543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.23  E-value=5.9e-07  Score=46.19  Aligned_cols=28  Identities=11%  Similarity=0.269  Sum_probs=25.9

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +||.|+.|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999998764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.22  E-value=3.7e-07  Score=46.28  Aligned_cols=27  Identities=22%  Similarity=0.620  Sum_probs=24.7

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      ++||.|+.|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            479999999999999999999998873

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.22  E-value=8.4e-07  Score=45.54  Aligned_cols=28  Identities=18%  Similarity=0.434  Sum_probs=25.8

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +||.|+.|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999998764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.22  E-value=7.3e-07  Score=46.15  Aligned_cols=27  Identities=37%  Similarity=0.875  Sum_probs=14.4

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +||.|..|++.|.....|..|++.|++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            345555555555555555555555444

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=9e-07  Score=55.51  Aligned_cols=35  Identities=9%  Similarity=0.121  Sum_probs=32.0

Q ss_pred             ccccCCCcccCCCCCCcCcChHHHHhhhhhccccc
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      ..+.+++||.|..|++.|.....|..|+++|.+..
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            45788999999999999999999999999998865

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.21  E-value=4.8e-08  Score=52.01  Aligned_cols=30  Identities=27%  Similarity=0.617  Sum_probs=16.3

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCCcccc
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHSYDSF  232 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~  232 (305)
                      ||.|..|++.|...+.|..|++.|.++++|
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            455555555555555555555555555443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=6.4e-07  Score=49.51  Aligned_cols=33  Identities=18%  Similarity=0.368  Sum_probs=29.7

Q ss_pred             ccCCCcccCC--CCCCcCcChHHHHhhhhhccccc
Q psy4409           8 HSGEKPYTCY--FCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus         8 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      |++++||.|.  .|++.|.....|..|+++|.++.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   35 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTL   35 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCC
Confidence            6789999999  59999999999999999987653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.20  E-value=7.8e-07  Score=46.02  Aligned_cols=27  Identities=33%  Similarity=0.861  Sum_probs=14.2

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      +|.|..|++.|...+.|..|++.|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            455555555555555555555555443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.20  E-value=8.7e-07  Score=45.47  Aligned_cols=26  Identities=27%  Similarity=0.838  Sum_probs=12.8

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      ||.|..|++.|...+.|..|++.|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            34455555555555555555544443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.19  E-value=6.7e-07  Score=45.96  Aligned_cols=26  Identities=27%  Similarity=0.588  Sum_probs=13.2

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      ||.|+.|++.|...+.|..|++.|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            44555555555555555555554443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.19  E-value=5.8e-07  Score=48.93  Aligned_cols=27  Identities=15%  Similarity=0.311  Sum_probs=25.1

Q ss_pred             cccCCCcccCCCCCCcCcChHHHHhhh
Q psy4409           7 KHSGEKPYTCYFCNFKSAHMSSINNHL   33 (305)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~   33 (305)
                      .+.+++||.|+.|++.|...+.|..|+
T Consensus         2 ~~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            2 SLLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CSSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCCccCeECCCCCCccCCHhHccCcC
Confidence            357899999999999999999999998

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.16  E-value=7.5e-08  Score=56.37  Aligned_cols=37  Identities=32%  Similarity=0.560  Sum_probs=25.5

Q ss_pred             HHHHHhCCCCCccCc--cchhhcCChHHHHHHHHhcCCc
Q psy4409         193 RHLRKHTKDKPYECG--FCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       193 ~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      .|+..|.+++||.|.  .|++.|..++.|..|++.|.++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            344457777777774  5777777777777777777654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.16  E-value=8.6e-07  Score=45.16  Aligned_cols=26  Identities=27%  Similarity=0.811  Sum_probs=14.6

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcC
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh  227 (305)
                      +||.|..|++.|...+.|..|++.|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            45555555555555555555555443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.16  E-value=1.3e-06  Score=44.01  Aligned_cols=26  Identities=19%  Similarity=0.511  Sum_probs=23.6

Q ss_pred             cccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      ||.|+.|++.|.....|..|+++|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            69999999999999999999998875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.15  E-value=1e-06  Score=44.50  Aligned_cols=25  Identities=24%  Similarity=0.745  Sum_probs=13.1

Q ss_pred             CCccCccchhhcCChHHHHHHHHhc
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      +||.|..|++.|...+.|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            3455555555555555555555443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.15  E-value=7.3e-07  Score=45.11  Aligned_cols=25  Identities=20%  Similarity=0.675  Sum_probs=14.4

Q ss_pred             CCccCccchhhcCChHHHHHHHHhc
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      +||.|+.|++.|...+.|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4555666666666666666665544

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.15  E-value=1.9e-06  Score=45.43  Aligned_cols=29  Identities=21%  Similarity=0.433  Sum_probs=26.6

Q ss_pred             CCcccCC--CCCCcCcChHHHHhhhhhcccc
Q psy4409          11 EKPYTCY--FCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        11 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      ++||.|+  .|++.|.....|..|+++|.++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4799999  8999999999999999998764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.14  E-value=1.1e-06  Score=45.00  Aligned_cols=28  Identities=29%  Similarity=0.523  Sum_probs=25.8

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +||.|+.|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            5899999999999999999999998764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.14  E-value=8e-08  Score=51.12  Aligned_cols=31  Identities=16%  Similarity=0.546  Sum_probs=27.6

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPY  204 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  204 (305)
                      ++|.|..|++.|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            3688999999999999999999999998876

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.13  E-value=1.9e-06  Score=45.09  Aligned_cols=28  Identities=18%  Similarity=0.570  Sum_probs=25.8

Q ss_pred             CcccCC--CCCCcCcChHHHHhhhhhcccc
Q psy4409          12 KPYTCY--FCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        12 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +||.|+  .|++.|.....|..|+++|.++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            589998  9999999999999999998765

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.12  E-value=1e-06  Score=45.20  Aligned_cols=26  Identities=35%  Similarity=0.774  Sum_probs=12.9

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      ||.|..|++.|.....|..|++.|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            44455555555555555555544443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.11  E-value=1.1e-06  Score=45.12  Aligned_cols=28  Identities=25%  Similarity=0.478  Sum_probs=25.8

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +||.|+.|++.|.....|..|+++|.++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            5899999999999999999999998764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.39  E-value=3.6e-07  Score=47.07  Aligned_cols=26  Identities=23%  Similarity=0.673  Sum_probs=15.8

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      ||.|..|++.|...+.|..|++.|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            45666666666666666666655554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.10  E-value=2.7e-06  Score=43.85  Aligned_cols=30  Identities=17%  Similarity=0.572  Sum_probs=26.4

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCC
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKP  203 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  203 (305)
                      ++|.|..|++.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            368999999999999999999999987653

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.37  E-value=4.2e-07  Score=46.83  Aligned_cols=28  Identities=29%  Similarity=0.489  Sum_probs=25.7

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +||.|+.|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5899999999999999999999988764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.37  E-value=4.2e-07  Score=47.15  Aligned_cols=29  Identities=31%  Similarity=0.629  Sum_probs=26.3

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      ++||.|+.|++.|.....|..|+++|.++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            47899999999999999999999988764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.09  E-value=1.9e-06  Score=54.04  Aligned_cols=33  Identities=21%  Similarity=0.447  Sum_probs=26.6

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      +.+++||.|..|++.|..++.|..|+++|+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            566788888888888888888888888887753

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.36  E-value=4.4e-07  Score=45.45  Aligned_cols=26  Identities=31%  Similarity=0.662  Sum_probs=23.9

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      +||.|+.|++.|.....|..|+++|.
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999998763

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.08  E-value=2.1e-06  Score=43.93  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=13.6

Q ss_pred             CcccCCCcccccCcHHHHHHHHHhCC
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRKHTK  200 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~h~~  200 (305)
                      +|.|+.|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            34555555555555555555555544

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.35  E-value=4.6e-07  Score=47.00  Aligned_cols=27  Identities=33%  Similarity=0.735  Sum_probs=15.9

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +||.|..|++.|...+.|..|++.|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            455666666666666666666655544

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.07  E-value=2.5e-06  Score=44.94  Aligned_cols=26  Identities=27%  Similarity=0.535  Sum_probs=12.8

Q ss_pred             CcccC--CCcccccCcHHHHHHHHHhCC
Q psy4409         175 RYVCM--VCPYHCRQNESMKRHLRKHTK  200 (305)
Q Consensus       175 ~~~C~--~C~~~f~~~~~l~~H~~~h~~  200 (305)
                      +|.|.  .|++.|...+.|..|+++|++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            44454  455555555555555554443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.07  E-value=2e-06  Score=44.97  Aligned_cols=26  Identities=35%  Similarity=0.966  Sum_probs=13.5

Q ss_pred             CccCc--cchhhcCChHHHHHHHHhcCC
Q psy4409         203 PYECG--FCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       203 ~~~C~--~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      ||.|+  .|++.|...+.|..|++.|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            45554  455555555555555555444

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.07  E-value=1.5e-06  Score=43.78  Aligned_cols=24  Identities=33%  Similarity=0.868  Sum_probs=13.0

Q ss_pred             ccCccchhhcCChHHHHHHHHhcC
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~hh  227 (305)
                      |.|..|++.|..++.|..|++.|+
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcC
Confidence            455555555555555555555444

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.04  E-value=3.3e-06  Score=43.61  Aligned_cols=28  Identities=29%  Similarity=0.441  Sum_probs=24.9

Q ss_pred             CcccCCCCCCcCcChHHHHhh-hhhcccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNH-LKIKHLE   39 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H-~~~h~~~   39 (305)
                      +||.|+.|++.|.....|..| +++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            589999999999999999999 6777654

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.24  E-value=8.5e-07  Score=44.32  Aligned_cols=24  Identities=29%  Similarity=0.816  Sum_probs=14.6

Q ss_pred             CccCccchhhcCChHHHHHHHHhc
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      ||.|+.|++.|...+.|..|++.|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            456666666666666666665544

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.94  E-value=3.2e-06  Score=43.67  Aligned_cols=20  Identities=55%  Similarity=1.163  Sum_probs=10.7

Q ss_pred             CccCccchhhcCChHHHHHH
Q psy4409         203 PYECGFCSLKFSRRDNLRRH  222 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H  222 (305)
                      ||.|..|++.|...+.|..|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHH
Confidence            45555555555555555555

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.78  E-value=8.7e-06  Score=41.49  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=24.2

Q ss_pred             CcccCC--CCCCcCcChHHHHhhhhhcc
Q psy4409          12 KPYTCY--FCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        12 ~~~~C~--~C~~~f~~~~~l~~H~~~h~   37 (305)
                      ++|.|+  .|++.|.....|..|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            589999  99999999999999999875

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.72  E-value=1.4e-05  Score=40.66  Aligned_cols=24  Identities=38%  Similarity=0.656  Sum_probs=12.4

Q ss_pred             CccCc--cchhhcCChHHHHHHHHhc
Q psy4409         203 PYECG--FCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       203 ~~~C~--~C~~~f~~~~~l~~H~~~h  226 (305)
                      +|.|.  .|++.|...+.|..|++.|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            34555  5555555555555555444

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.00011  Score=45.60  Aligned_cols=49  Identities=27%  Similarity=0.497  Sum_probs=39.9

Q ss_pred             CCCCccCCCcHHHHHHHH-hhCCCC------CeeCC--cCcccccChHHHHHHHHHhc
Q psy4409          79 LVCDYHSPRSIDMRRHIR-RHTGEK------PFKCN--FCFQCFTQNVSLQTHIRIKH  127 (305)
Q Consensus        79 ~~C~~~f~~~~~l~~H~~-~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~~H  127 (305)
                      ..|++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            348899999999999984 787655      78897  69998888888999988754

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00013  Score=45.31  Aligned_cols=48  Identities=25%  Similarity=0.519  Sum_probs=37.6

Q ss_pred             CCcccccCcHHHHHHHH-HhCCCC------CccCc--cchhhcCChHHHHHHHHhcC
Q psy4409         180 VCPYHCRQNESMKRHLR-KHTKDK------PYECG--FCSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       180 ~C~~~f~~~~~l~~H~~-~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~hh  227 (305)
                      .|++.|.+...|..|+. .|.+.+      +|.|.  -|+..+.....|..|++..|
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            38888888888888874 676654      68886  68888888888888888654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.13  E-value=0.002  Score=48.69  Aligned_cols=53  Identities=15%  Similarity=0.246  Sum_probs=27.6

Q ss_pred             CcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      +..|+.|+..+ ....|..|+......++..|++|+..|. ...|..|...+.+.
T Consensus       110 ~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~  162 (170)
T 3hcs_A          110 LMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLA  162 (170)
T ss_dssp             EEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC-
T ss_pred             eeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcCh
Confidence            44555665555 3444555655555555555666655552 34455555554443

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.71  E-value=0.00036  Score=49.00  Aligned_cols=33  Identities=15%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             cccccCCCcccCCCCCCcCcChHHHHhhhhhcc
Q psy4409           5 LRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus         5 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      -..|+|+++|.|..|++.|.+...|..|+++..
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            346889999999999999999999999987643

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.70  E-value=0.0016  Score=46.55  Aligned_cols=77  Identities=16%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             cCccccCCCCccchhcHHHHHHHH--hhhcCccccCCCCCcccCC------CcccccCcHHHHHHHHHhCCCCCccCccc
Q psy4409         138 STRIYCTFCRDPLYNDLKILLQHT--KNCKGAFRENDSYRYVCMV------CPYHCRQNESMKRHLRKHTKDKPYECGFC  209 (305)
Q Consensus       138 ~~~~~C~~C~~~~~~~~~~l~~h~--~~~~~~~~~~~~~~~~C~~------C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  209 (305)
                      ..++.|.+|. ..|.+...+..|.  +.|....     +.+.+..      =+..+....    +...+.+.+.|.|.+|
T Consensus        30 ~~~~~C~~C~-v~~~S~s~~~~H~~gkkH~~~v-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C   99 (127)
T 1zu1_A           30 FSDTQCKVCS-AVLISESQKLAHYQSRKHANKV-----RRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVC   99 (127)
T ss_dssp             BCSSEETTTT-EECCSHHHHHHHHHCHHHHHHH-----HHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTT
T ss_pred             CCCCcCcCCC-CEeCCHHHHHHHHCcHHHHHHH-----HHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCC
Confidence            4567888888 7888888888887  3343221     1111100      011221111    1123445677999999


Q ss_pred             hhhcCChHHHHHHHH
Q psy4409         210 SLKFSRRDNLRRHLK  224 (305)
Q Consensus       210 ~~~f~~~~~l~~H~~  224 (305)
                      +..|.+...|..|+.
T Consensus       100 ~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A          100 NMTFSSPVVAESHYI  114 (127)
T ss_dssp             TEECSSHHHHHHHHT
T ss_pred             CCEeCCHHHHHHHHC
Confidence            999999999999986

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.43  E-value=0.0034  Score=44.81  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=20.9

Q ss_pred             CcccCCCCCCcCcChHHHHhhh
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHL   33 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~   33 (305)
                      +++.|.+|+..|.+...+..|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHH
Confidence            6789999999999999999998

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.37  E-value=0.0052  Score=34.39  Aligned_cols=26  Identities=23%  Similarity=0.427  Sum_probs=18.1

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhC
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHT  199 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~  199 (305)
                      .+|.|+.|+..|.....|+.||+.-.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CceeCCcccccccchHHHHhhhhhcC
Confidence            56677777777777777777776433

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.35  E-value=0.0024  Score=35.77  Aligned_cols=25  Identities=16%  Similarity=0.219  Sum_probs=22.7

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIK   36 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h   36 (305)
                      -+|.||.|+..|.....|+.||+-.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            6799999999999999999999743

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.21  E-value=0.00076  Score=47.33  Aligned_cols=30  Identities=20%  Similarity=0.345  Sum_probs=24.4

Q ss_pred             HHhCCCCCccCccchhhcCChHHHHHHHHh
Q psy4409         196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKD  225 (305)
Q Consensus       196 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  225 (305)
                      ..|+|.++|.|..|++.|.+.+.|..|++.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            346778888888888888888888888764

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.35  E-value=0.016  Score=30.35  Aligned_cols=27  Identities=22%  Similarity=0.423  Sum_probs=22.6

Q ss_pred             CeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409         103 PFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      .|.||+|.+.|.+...|..|....|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            488999998999998999998887764

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.33  E-value=0.0092  Score=31.25  Aligned_cols=25  Identities=24%  Similarity=0.539  Sum_probs=18.9

Q ss_pred             ccCccchhhcCChHHHHHHHHhcCC
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      |.||+|.+.|.+...|..|....|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            6777777777777777777776665

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.65  E-value=0.012  Score=44.28  Aligned_cols=109  Identities=15%  Similarity=0.111  Sum_probs=68.3

Q ss_pred             cccCCCCccCCCcHHHH-HHHHhhCCCCCeeC--CcCcccccChHHHHHHHHHhcCccccccccCcCccccCCCCccchh
Q psy4409          76 FTCLVCDYHSPRSIDMR-RHIRRHTGEKPFKC--NFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYN  152 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~-~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~~~~  152 (305)
                      ..|+.|...+.....+. .-+..........|  ..|+..+. ...|..|...          -...+..|+.|+ ..+ 
T Consensus        54 ~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~-~~~l~~H~~~----------C~~~~v~C~~C~-~~~-  120 (170)
T 3hcs_A           54 HKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKME-LRHLEDHQAH----------CEFALMDCPQCQ-RPF-  120 (170)
T ss_dssp             SBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEE-GGGHHHHHTT----------CTTSEEECTTTC-CEE-
T ss_pred             CCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceec-HhHHHHHHhc----------CCceeeECCCCC-hHH-
Confidence            48999988776531111 00111122456778  46887655 4457777643          233377899998 444 


Q ss_pred             cHHHHHHHHhhhcCccccCCCCCcccCCCcccccCcHHHHHHHHHhCCCCCc
Q psy4409         153 DLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPY  204 (305)
Q Consensus       153 ~~~~l~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  204 (305)
                      ....|..|....-..      ++..|+.|+..+. ...|..|..++.|..++
T Consensus       121 ~r~~l~~H~~~~C~~------r~~~C~~C~~~~~-~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          121 QKFHINIHILKDCPR------RQVSCDNCAASMA-FEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             EGGGHHHHHHHTCTT------CEEECTTTCCEEE-GGGHHHHHTTCCC----
T ss_pred             HHHHHHHHhhhhCCC------CCeECCCCCCccC-HHHHHhHHHhCcChhhh
Confidence            566788888654444      6788999999885 56789999998887653

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=92.86  E-value=0.039  Score=34.69  Aligned_cols=14  Identities=21%  Similarity=0.548  Sum_probs=9.6

Q ss_pred             CCcccCCCcccccC
Q psy4409         174 YRYVCMVCPYHCRQ  187 (305)
Q Consensus       174 ~~~~C~~C~~~f~~  187 (305)
                      ..|+||.||..|..
T Consensus        50 F~FkCP~CgEEFyG   63 (95)
T 2k5c_A           50 FVFKCPVCGEEFYG   63 (95)
T ss_dssp             SEEECTTTCCEEET
T ss_pred             HhhcCCCccHHHhc
Confidence            56777777777653

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=92.11  E-value=0.28  Score=28.27  Aligned_cols=47  Identities=21%  Similarity=0.535  Sum_probs=35.7

Q ss_pred             cccCCCcccccCcHHHHHHHHHhCCCCCccCccchh-hcCChHHHHHHHHh
Q psy4409         176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSL-KFSRRDNLRRHLKD  225 (305)
Q Consensus       176 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~-~f~~~~~l~~H~~~  225 (305)
                      ..|.+|....-+...|..|...-...   +||+|-. .-.+.+.|+.|.+.
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp~g---qCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCING---QCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHTTT---BCTTTCCBCCSSHHHHHHHHTT
T ss_pred             chhhHHHhhhhhHHHHHHHhccCCCC---CCCcccCcCCcCHHHHHHHHHH
Confidence            46888888888888899998775543   7888853 45778889998763

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.29  E-value=0.17  Score=26.53  Aligned_cols=25  Identities=12%  Similarity=0.172  Sum_probs=22.0

Q ss_pred             CCCcccCCCCCCcCcChHHHHhhhh
Q psy4409          10 GEKPYTCYFCNFKSAHMSSINNHLK   34 (305)
Q Consensus        10 ~~~~~~C~~C~~~f~~~~~l~~H~~   34 (305)
                      ...++.|..|+.+|+....+..|.+
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHH
T ss_pred             ccCcCeeccccceehhhHHHhhhhe
Confidence            3467899999999999999999975

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=89.58  E-value=0.59  Score=24.48  Aligned_cols=24  Identities=13%  Similarity=0.235  Sum_probs=17.0

Q ss_pred             CCcccCCCcccccCcHHHHHHHHH
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRK  197 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~  197 (305)
                      .++.|..|+-.|.+...+..|++.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhee
Confidence            556777777777777777777654

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=89.48  E-value=0.14  Score=28.50  Aligned_cols=12  Identities=25%  Similarity=0.448  Sum_probs=6.4

Q ss_pred             cccCCCcccccC
Q psy4409         176 YVCMVCPYHCRQ  187 (305)
Q Consensus       176 ~~C~~C~~~f~~  187 (305)
                      |.|..||+.|..
T Consensus         4 Y~C~rCg~~fs~   15 (48)
T 4ayb_P            4 YRCGKCWKTFTD   15 (48)
T ss_dssp             -CCCCTTTTCCC
T ss_pred             EEeeccCCCccH
Confidence            556666666554

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=87.99  E-value=0.27  Score=31.04  Aligned_cols=40  Identities=23%  Similarity=0.448  Sum_probs=30.8

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccCh
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN  116 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  116 (305)
                      |.|..|+..+. +..+..|+..-.+-..|.|..|+..|...
T Consensus        11 F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~~   50 (79)
T 1wjv_A           11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWGD   50 (79)
T ss_dssp             EEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEGG
T ss_pred             EEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCCC
Confidence            88999997765 46788887665555678999999999754

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=87.82  E-value=0.94  Score=26.09  Aligned_cols=45  Identities=20%  Similarity=0.510  Sum_probs=20.4

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCccc-ccChHHHHHHH
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQC-FTQNVSLQTHI  123 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~-f~~~~~l~~H~  123 (305)
                      ..|.+|...-.+...|..|...-...   .||+|-.- ..+.+.|+.|.
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp~g---qCPYC~~~~e~tesAlQaHf   49 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCING---QCPYCMTITEATESALQAHY   49 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHTTT---BCTTTCCBCCSSHHHHHHHH
T ss_pred             chhhHHHhhhhhHHHHHHHhccCCCC---CCCcccCcCCcCHHHHHHHH
Confidence            44555555555555555555443322   35544322 23344444444

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=86.55  E-value=0.37  Score=27.82  Aligned_cols=20  Identities=30%  Similarity=0.595  Sum_probs=19.1

Q ss_pred             ccCCCCCCcCcChHHHHhhh
Q psy4409          14 YTCYFCNFKSAHMSSINNHL   33 (305)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~   33 (305)
                      -.|.+|+..|..+..|+.|+
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            69999999999999999998

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=85.55  E-value=0.38  Score=24.25  Aligned_cols=26  Identities=23%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             cccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      .-.|..|.+.|+.-..|..|++.-|.
T Consensus         9 kqhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A            9 KQHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45699999999999999999987664

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=84.28  E-value=0.45  Score=30.05  Aligned_cols=46  Identities=17%  Similarity=0.425  Sum_probs=27.7

Q ss_pred             CcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHH
Q psy4409         175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH  222 (305)
Q Consensus       175 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  222 (305)
                      .|.|..||..++ +..+..|...-.+...|.|-.|++.|.. ..++.|
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             EEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            366777776654 4456677655554455777777777754 344444

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=84.02  E-value=0.33  Score=31.44  Aligned_cols=24  Identities=38%  Similarity=0.636  Sum_probs=16.9

Q ss_pred             ccCccchhhcCChHHHHHHHHhcCCcc
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      ..|.+||+.|..   |.+|+..+|+..
T Consensus        22 iiClecGK~fK~---LkRHL~~~hglt   45 (87)
T 2jsp_A           22 IVCLECGGSFKS---LKRHLTTHHSMT   45 (87)
T ss_dssp             EECTBTCCEESB---HHHHHHHTTCSC
T ss_pred             eEecccchhhHH---HHHHHHHccCCC
Confidence            567777777764   667877777654

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=83.89  E-value=0.59  Score=23.14  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=14.3

Q ss_pred             ccCccchhhcCChHHHHHHHH
Q psy4409         204 YECGFCSLKFSRRDNLRRHLK  224 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~  224 (305)
                      |.|++|.....+...|..|..
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHH
Confidence            567777777777777776654

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=83.82  E-value=0.66  Score=23.36  Aligned_cols=23  Identities=43%  Similarity=0.959  Sum_probs=12.4

Q ss_pred             cCccchhhcCChHHHHHHHHhcC
Q psy4409         205 ECGFCSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       205 ~C~~C~~~f~~~~~l~~H~~~hh  227 (305)
                      .|.+|.+.|+.-..|..|++..|
T Consensus        11 hcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            35555555555555555555433

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=80.55  E-value=1  Score=30.26  Aligned_cols=10  Identities=20%  Similarity=0.574  Sum_probs=6.4

Q ss_pred             cccCCCCccC
Q psy4409          76 FTCLVCDYHS   85 (305)
Q Consensus        76 ~~C~~C~~~f   85 (305)
                      |.|..||..|
T Consensus        68 ~~C~~CG~~F   77 (105)
T 2gmg_A           68 AQCRKCGFVF   77 (105)
T ss_dssp             CBBTTTCCBC
T ss_pred             cChhhCcCee
Confidence            6666666666

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=80.35  E-value=0.79  Score=30.78  Aligned_cols=28  Identities=18%  Similarity=0.446  Sum_probs=15.7

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhh
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLK  212 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  212 (305)
                      .+++|..||..|..           .-.+|-+||.|+..
T Consensus        66 ~p~~C~~CG~~F~~-----------~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           66 KPAQCRKCGFVFKA-----------EINIPSRCPKCKSE   93 (105)
T ss_dssp             CCCBBTTTCCBCCC-----------CSSCCSSCSSSCCC
T ss_pred             ECcChhhCcCeecc-----------cCCCCCCCcCCCCC
Confidence            45667777766611           12345566666644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-07
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	8e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	5e-07
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	5e-05
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	5e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	8e-07
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	7e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	0.002
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	1e-06
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	2e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	3e-05
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.001
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.001
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	4e-04
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	5e-04
d2adra2	31	g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Sac	7e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.003

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 96  RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
           R H+GEKP++C  C   FTQ+ +++ HI  KHT 
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE 34

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 6e-05
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
           R H+ +KPYEC  C  +F++   ++ H+  +H+
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 33

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (79), Expect = 8e-04
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 6  RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI 41
          R HSGEKPY CY C+ +     ++  H+  KH E +
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 5e-07
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 93  RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           R   +    + +KC+ C + F+ +  L  H R  HT
Sbjct: 2   RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HT 36

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
           R   +  + + Y+C  C   FS   +L +H +
Sbjct: 2   RSEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 3  RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
          R   +    + Y C  C    +H S ++ H + 
Sbjct: 2  RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 34

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (101), Expect = 8e-07
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 94  HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
             R  TG KPF+C  C + F+++  L  H + 
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (87), Expect = 7e-05
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
             R  T  KP++C  C   FSR D+L  H K
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 4  HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
            R  +G KP+ C  C+   +    +  H K 
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (99), Expect = 1e-06
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 98  HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           H+GEKP+ C  C + F+++  L  H R+ HT
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRV-HT 31

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 198 HTKDKPYECGFCSLKFSRRDNLRRHLK 224
           H+ +KPY C  C   FSR   L +H +
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQR 28

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 96  RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
           R HTGEKP+ C+ C + F Q   L  H +  H
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 4e-04
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
           R HT +KPY C  C   F ++  L  H K  H
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 6  RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
          R H+GEKPY C  C+        ++ H K  H   
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 98  HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
            +G++PF C  C   FT   +   H+++ HT
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKV-HT 31

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (85), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 76  FTCLVCDYHSPRSIDMRRHIRR-HTGEKPFKCN 107
           + C  C     R   +  HI++ HT E+P KC 
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 99  TGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           +  KP+ C  C + F++   L  HI+  HT
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVHT 30

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 199 TKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
           +  KPY C  C   FSR D+L  H+K  H+
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVHT 30

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.001
 Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 176 YVCMVCPYHCRQNESMKRHLRK-HTKDKPYEC 206
           Y+C  C     + + +  H+++ HT ++P++C
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 4e-04
 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 75  NFTC--LVCDYHSPRSIDMRRHIRRHTGEKPFKCNF 108
           +F+C    C         ++ H++ H+  + + C F
Sbjct: 1   SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (80), Expect = 5e-04
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           +KPF+C  C + F+++  L THIR  HT
Sbjct: 1   QKPFQCRICMRNFSRSDHLTTHIRT-HT 27

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 34.4 bits (79), Expect = 7e-04
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 203 PYECGFCSLKFSRRDNLRRHLKDQHS 228
           PY CG C+  F+RRD L RH +  HS
Sbjct: 1   PYPCGLCNRAFTRRDLLIRHAQKIHS 26

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 32.6 bits (75), Expect = 0.003
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKHT 128
           + F C  C + F +   L+ H R  HT
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRS-HT 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.62
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.54
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.31
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.26
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.22
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.19
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.17
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.15
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.14
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.13
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.12
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.1
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.1
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.01
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.97
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.96
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.93
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.92
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.91
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.91
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.9
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.87
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.83
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.77
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.77
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.71
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.7
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.68
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.65
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.62
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.58
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.56
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.55
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.46
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.41
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.4
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.36
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.27
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.2
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.16
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.14
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.11
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.08
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.04
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.01
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.96
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.95
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.94
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.86
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.72
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.68
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.67
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.64
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.57
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.55
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.48
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.4
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.38
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.37
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.37
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.35
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.35
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.3
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.28
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.21
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.21
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.17
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.16
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.14
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.12
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.08
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.0
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.96
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.95
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.85
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.77
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.73
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.69
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.69
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.67
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.62
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.6
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.51
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.5
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.47
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.47
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.35
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.32
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.97
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.97
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.6
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.3
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.11
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.03
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.71
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.24
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.96
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.94
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	93.32
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	93.08
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.68
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.41
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	91.93
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.51
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.36
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	91.02
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.63
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.51
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	90.09
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	89.77
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	88.15
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	88.13
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	88.08
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.74
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	87.69
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.35
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	86.17
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	84.43
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	84.36
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	83.66
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	83.09
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	81.66
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	80.81
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	80.43
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	80.31

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-16  Score=95.30  Aligned_cols=52  Identities=31%  Similarity=0.642  Sum_probs=49.8

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCccCccchhhcCChHHHHHHHHhc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      ++|.|. ||+.|.....|..|+++|++++||.|.+||+.|...+.|..|+++|
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            799995 9999999999999999999999999999999999999999999875

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.7e-15  Score=89.45  Aligned_cols=50  Identities=26%  Similarity=0.593  Sum_probs=48.2

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcccccChHHHHHHHHH
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI  125 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (305)
                      +|.|. ||+.|.....|..|+++|.+++||.|+.|++.|.....|..|+++
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            49995 999999999999999999999999999999999999999999987

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.3e-13  Score=72.16  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=35.4

Q ss_pred             cccccccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         3 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +|+++|++++||.|+.||+.|...+.|..|+++|.++
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            7999999999999999999999999999999999874

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.8e-12  Score=69.78  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=33.1

Q ss_pred             ccccccCCCcccCCCCCCcCcChHHHHhhhhhccc
Q psy4409           4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus         4 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      |.|+|+|++||.|+.|++.|.....|..|+++|..
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            78999999999999999999999999999998864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.6e-12  Score=68.60  Aligned_cols=35  Identities=34%  Similarity=0.648  Sum_probs=32.8

Q ss_pred             ccccCCCcccCCCCCCcCcChHHHHhhhhhccccc
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      |+|+|++||.|.+|++.|...+.|..|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            68999999999999999999999999999998753

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.9e-12  Score=68.76  Aligned_cols=34  Identities=24%  Similarity=0.681  Sum_probs=22.9

Q ss_pred             CCcccCCCcccccCcHHHHHHHH-HhCCCCCccCc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLR-KHTKDKPYECG  207 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~  207 (305)
                      +||.|..||+.|...+.|..|++ +|++++||.|.
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            66667777777776667777654 46666666665

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.9e-12  Score=67.77  Aligned_cols=34  Identities=44%  Similarity=0.901  Sum_probs=31.1

Q ss_pred             ccccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      |+|+|++||.|++|++.|+....|..|++.+|.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            6899999999999999999999999999777654

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.3e-12  Score=65.18  Aligned_cols=33  Identities=36%  Similarity=0.580  Sum_probs=31.2

Q ss_pred             cccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           7 KHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +|++++||.|..|++.|...+.|..|+++|.++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            589999999999999999999999999999874

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.1e-12  Score=67.47  Aligned_cols=37  Identities=35%  Similarity=0.590  Sum_probs=34.1

Q ss_pred             CCCCccCccchhhcCChHHHHHHHH-hcCCccccCCCC
Q psy4409         200 KDKPYECGFCSLKFSRRDNLRRHLK-DQHSYDSFRSST  236 (305)
Q Consensus       200 ~~~~~~C~~C~~~f~~~~~l~~H~~-~hh~~~~~~c~~  236 (305)
                      -++||.|..||+.|...+.|.+|++ .|.+++||.|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            3689999999999999999999986 699999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.6e-12  Score=69.64  Aligned_cols=37  Identities=22%  Similarity=0.504  Sum_probs=29.9

Q ss_pred             HHHHHhCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       193 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      +|+++|++++||.|..||+.|...+.|..|+++|++|
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            3677788888888888888888888888888888774

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.1e-11  Score=64.26  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=26.3

Q ss_pred             HhCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         197 KHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       197 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      +|++++||.|..||+.|..++.|..|+++|.+|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            477888888888888888888888888887764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1e-11  Score=66.28  Aligned_cols=34  Identities=38%  Similarity=0.772  Sum_probs=29.6

Q ss_pred             HHhCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       196 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      ++|+|++||.|.+|++.|..++.|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4688999999999999999999999999888875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.5e-11  Score=64.67  Aligned_cols=32  Identities=25%  Similarity=0.529  Sum_probs=30.1

Q ss_pred             ccCCCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409           8 HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus         8 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      |+|++||.|++|++.|+....|..|+++|.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            79999999999999999999999999998764

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.3e-11  Score=65.75  Aligned_cols=34  Identities=32%  Similarity=0.838  Sum_probs=30.4

Q ss_pred             HHhCCCCCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       196 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      ++|+|++||.|++|++.|..++.|..|++.+|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4689999999999999999999999999887765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=9.4e-12  Score=66.91  Aligned_cols=35  Identities=37%  Similarity=0.550  Sum_probs=29.6

Q ss_pred             HHHHhCCCCCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       194 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      |.++|++++||.|..|++.|..++.|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            56788899999999999999999999999887753

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=7e-11  Score=62.03  Aligned_cols=31  Identities=29%  Similarity=0.660  Sum_probs=22.9

Q ss_pred             hCCCCCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       198 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      |+|++||+|.+|++.|..++.|.+|+++|..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            5677777777777777777777777777655

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.97  E-value=1.4e-10  Score=58.21  Aligned_cols=28  Identities=25%  Similarity=0.778  Sum_probs=15.8

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      +||.|++|++.|..++.|.+|+++|+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            3555555555555555555555555554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=9.9e-11  Score=58.02  Aligned_cols=28  Identities=18%  Similarity=0.520  Sum_probs=26.5

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      ||||.|++|++.|.....|..|+++|.+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6999999999999999999999999864

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.93  E-value=3.2e-10  Score=56.91  Aligned_cols=29  Identities=21%  Similarity=0.456  Sum_probs=27.3

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhccccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      +||.|++|++.|.....|..|+++|.+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999863

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.2e-10  Score=65.86  Aligned_cols=39  Identities=18%  Similarity=0.465  Sum_probs=34.5

Q ss_pred             CccccccccCCCcccCCC--CCCcCcChHHHHhhhhhccccc
Q psy4409           1 MRRHLRKHSGEKPYTCYF--CNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus         1 L~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      |.+|+ .|++++||.|++  |++.|...+.|..|+++|.+++
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34566 599999999988  9999999999999999998863

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.3e-10  Score=56.74  Aligned_cols=28  Identities=32%  Similarity=0.737  Sum_probs=15.0

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      +||.|++|++.|..++.|.+|+++|.++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            3455555555555555555555555544

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=2e-10  Score=56.87  Aligned_cols=26  Identities=38%  Similarity=0.940  Sum_probs=12.9

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcC
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh  227 (305)
                      +||+|++|++.|..++.|.+|+++|+
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCCcc
Confidence            44555555555555555555554443

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.2e-10  Score=60.02  Aligned_cols=32  Identities=22%  Similarity=0.617  Sum_probs=21.8

Q ss_pred             cccCC--CcccccCcHHHHHHHHHhCCCCCccCc
Q psy4409         176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECG  207 (305)
Q Consensus       176 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~  207 (305)
                      |.|+.  |++.|.....|..|+++|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45654  777777777777777777777777765

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.1e-10  Score=55.48  Aligned_cols=29  Identities=21%  Similarity=0.437  Sum_probs=27.2

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhccccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      |||.|++|++.|...+.|..|+++|.+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            69999999999999999999999998863

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.3e-10  Score=58.58  Aligned_cols=33  Identities=21%  Similarity=0.641  Sum_probs=30.8

Q ss_pred             cccCC--CCccCCCcHHHHHHHHhhCCCCCeeCCc
Q psy4409          76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNF  108 (305)
Q Consensus        76 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~  108 (305)
                      |.|+.  |++.|.....|+.|+++|++++||+|++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            88987  9999999999999999999999999974

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1e-09  Score=52.80  Aligned_cols=26  Identities=35%  Similarity=0.636  Sum_probs=24.5

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      |||.|..||+.|...+.|..|+++|.
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            79999999999999999999999873

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=1.1e-10  Score=66.07  Aligned_cols=39  Identities=33%  Similarity=0.692  Sum_probs=27.7

Q ss_pred             HHHHHHHhCCCCCccCcc--chhhcCChHHHHHHHHhcCCcc
Q psy4409         191 MKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHLKDQHSYD  230 (305)
Q Consensus       191 l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~~~  230 (305)
                      |..|+ .|.+++||.|.+  |++.|..++.|..|+++|.+++
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34455 377777777776  7777777777777777777753

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.9e-09  Score=51.86  Aligned_cols=24  Identities=33%  Similarity=0.660  Sum_probs=12.0

Q ss_pred             CccCccchhhcCChHHHHHHHHhc
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      ||+|..||+.|..++.|.+|+++|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            455555555555555555554444

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.9e-09  Score=52.66  Aligned_cols=28  Identities=29%  Similarity=0.621  Sum_probs=26.3

Q ss_pred             CcccCCC--CCCcCcChHHHHhhhhhcccc
Q psy4409          12 KPYTCYF--CNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        12 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      |||.|++  |++.|...+.|..|+++|.++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6999999  999999999999999999874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.6e-09  Score=52.76  Aligned_cols=27  Identities=41%  Similarity=0.910  Sum_probs=15.0

Q ss_pred             CCccCcc--chhhcCChHHHHHHHHhcCC
Q psy4409         202 KPYECGF--CSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       202 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +||.|++  |++.|..++.|.+|+++|++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            3555555  55555555555555555554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.6e-09  Score=52.90  Aligned_cols=28  Identities=25%  Similarity=0.619  Sum_probs=26.1

Q ss_pred             CcccCCC--CCCcCcChHHHHhhhhhcccc
Q psy4409          12 KPYTCYF--CNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        12 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      |||.|++  |+++|.....|..|+++|.++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999988  999999999999999999874

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.8e-09  Score=52.50  Aligned_cols=27  Identities=41%  Similarity=0.864  Sum_probs=14.9

Q ss_pred             CCccCcc--chhhcCChHHHHHHHHhcCC
Q psy4409         202 KPYECGF--CSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       202 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +||.|++  |++.|..++.|.+|+++|++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCC
Confidence            3555554  55555555555555555554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.9e-08  Score=51.06  Aligned_cols=29  Identities=21%  Similarity=0.570  Sum_probs=26.2

Q ss_pred             CcccCCC--CCCcCcChHHHHhhhhhccccc
Q psy4409          12 KPYTCYF--CNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus        12 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      +||.|++  |++.|+....|..|+++|.+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            6999964  9999999999999999998763

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.5e-08  Score=51.42  Aligned_cols=27  Identities=33%  Similarity=0.879  Sum_probs=14.2

Q ss_pred             CccCcc--chhhcCChHHHHHHHHhcCCc
Q psy4409         203 PYECGF--CSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       203 ~~~C~~--C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      ||.|++  |++.|...+.|.+|+++|+++
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            455532  555555555555555555544

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=3e-08  Score=50.52  Aligned_cols=29  Identities=21%  Similarity=0.492  Sum_probs=26.7

Q ss_pred             CCcccCCC--CCCcCcChHHHHhhhhhcccc
Q psy4409          11 EKPYTCYF--CNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        11 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      ++||.|++  |++.|+....|..|+++|...
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999998  999999999999999999753

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=2.7e-08  Score=49.41  Aligned_cols=27  Identities=22%  Similarity=0.673  Sum_probs=25.1

Q ss_pred             CcccCCC--CCCcCcChHHHHhhhhhccc
Q psy4409          12 KPYTCYF--CNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        12 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   38 (305)
                      |||.|++  |++.|.+...|..|+++|.+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6999988  99999999999999999864

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=8.7e-08  Score=48.76  Aligned_cols=27  Identities=37%  Similarity=0.856  Sum_probs=14.2

Q ss_pred             CCccCcc--chhhcCChHHHHHHHHhcCC
Q psy4409         202 KPYECGF--CSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       202 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +||.|.+  |++.|+..+.|.+|+++|..
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            4555554  55555555555555555443

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.3e-08  Score=48.08  Aligned_cols=26  Identities=35%  Similarity=0.781  Sum_probs=24.3

Q ss_pred             CcccCCC--CCCcCcChHHHHhhhhhcc
Q psy4409          12 KPYTCYF--CNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        12 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   37 (305)
                      +||.|++  |++.|.+...|..|+++|.
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999998  9999999999999999874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6.7e-08  Score=46.08  Aligned_cols=29  Identities=24%  Similarity=0.605  Sum_probs=26.9

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      ++||.||+|+.+|..+..+..|++.|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            68999999999999999999999998764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=4.7e-08  Score=48.53  Aligned_cols=26  Identities=38%  Similarity=0.939  Sum_probs=14.5

Q ss_pred             CCccCcc--chhhcCChHHHHHHHHhcC
Q psy4409         202 KPYECGF--CSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       202 ~~~~C~~--C~~~f~~~~~l~~H~~~hh  227 (305)
                      +||.|++  |++.|.+.+.|.+|+++|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            3555555  5555555555555555554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=2.5e-07  Score=43.50  Aligned_cols=27  Identities=37%  Similarity=0.624  Sum_probs=25.0

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      ++||.|.+||+.|.......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999998874

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.9e-07  Score=45.06  Aligned_cols=24  Identities=33%  Similarity=0.696  Sum_probs=11.5

Q ss_pred             CcccCC--CcccccCcHHHHHHHHHh
Q psy4409         175 RYVCMV--CPYHCRQNESMKRHLRKH  198 (305)
Q Consensus       175 ~~~C~~--C~~~f~~~~~l~~H~~~h  198 (305)
                      ||.|+.  |++.|...+.|..|+++|
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            444444  444444444444444444

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7.2e-07  Score=40.40  Aligned_cols=26  Identities=15%  Similarity=0.369  Sum_probs=23.8

Q ss_pred             cccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      |.+|++|++.|+.+..|..|++.|.+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            67899999999999999999998864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.6e-07  Score=40.76  Aligned_cols=23  Identities=35%  Similarity=0.679  Sum_probs=11.3

Q ss_pred             ccCCCcccccCcHHHHHHHHHhC
Q psy4409         177 VCMVCPYHCRQNESMKRHLRKHT  199 (305)
Q Consensus       177 ~C~~C~~~f~~~~~l~~H~~~h~  199 (305)
                      +|+.|++.|+.+..|..||+.|+
T Consensus         3 kc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             ccchhhhHhcchhHHHHHhhccC
Confidence            44455555555555555554444

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.4e-07  Score=42.50  Aligned_cols=27  Identities=37%  Similarity=0.700  Sum_probs=24.9

Q ss_pred             CcccCCC--CCCcCcChHHHHhhhhhccc
Q psy4409          12 KPYTCYF--CNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        12 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   38 (305)
                      +||.|.+  |+++|...++|++|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6999998  99999999999999998774

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=9.4e-07  Score=42.14  Aligned_cols=27  Identities=37%  Similarity=0.947  Sum_probs=22.7

Q ss_pred             CCccCcc--chhhcCChHHHHHHHHhcCC
Q psy4409         202 KPYECGF--CSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       202 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +||.|.+  |++.++.++.|++|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5788877  88889999999999888775

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.6e-06  Score=40.69  Aligned_cols=25  Identities=36%  Similarity=0.789  Sum_probs=21.5

Q ss_pred             CCCeeCCcCcccccChHHHHHHHHH
Q psy4409         101 EKPFKCNFCFQCFTQNVSLQTHIRI  125 (305)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~  125 (305)
                      ++||.|.+||+.|.......+|.++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhh
Confidence            4788999999999998888888877

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.7e-06  Score=42.15  Aligned_cols=31  Identities=29%  Similarity=0.582  Sum_probs=20.2

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCCCc
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPY  204 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  204 (305)
                      +...|..||+.|...-.|.+|...|.+++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            3445666666666666666666666666665

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.1e-06  Score=40.85  Aligned_cols=27  Identities=37%  Similarity=0.995  Sum_probs=15.2

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +||.|++|+..|..+.-+.-|.+.|-+
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            455555555555555555555555443

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3.2e-06  Score=39.51  Aligned_cols=27  Identities=19%  Similarity=0.452  Sum_probs=25.1

Q ss_pred             cccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      .|.|++||......+.|.+|++.|.++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCC
Confidence            489999999999999999999999875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.6e-06  Score=39.56  Aligned_cols=28  Identities=29%  Similarity=0.677  Sum_probs=26.3

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      ++||+|..|.+.-+..+.|..|++.|.+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            5899999999999999999999999976

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.3e-06  Score=39.74  Aligned_cols=27  Identities=22%  Similarity=0.669  Sum_probs=16.9

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcCC
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +||+|.+|...-.+.++|..|++.|++
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            556666666666666666666666654

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.2e-06  Score=41.18  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=29.1

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcCCccccC
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQHSYDSFR  233 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  233 (305)
                      +...|..||+.|.....|.+|...|.+++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            44679999999999999999999999999983

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.7e-06  Score=38.95  Aligned_cols=26  Identities=19%  Similarity=0.621  Sum_probs=16.0

Q ss_pred             ccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      |.|++||....-++.|+.|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            55666666666666666666666553

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=1.1e-05  Score=37.61  Aligned_cols=29  Identities=21%  Similarity=0.326  Sum_probs=26.5

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +..|.|..|...|..+..|+.||..|.++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            57899999999999999999999998764

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=1.2e-05  Score=36.49  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=15.2

Q ss_pred             cCccchhhcCChHHHHHHHHhcCCc
Q psy4409         205 ECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       205 ~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      +|+.|.+.|.++..|..|-++|+++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            4666666666666666666666554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=9e-06  Score=37.98  Aligned_cols=24  Identities=38%  Similarity=0.917  Sum_probs=22.1

Q ss_pred             cccCCCCCCcCcChHHHHhhhhhc
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKIK   36 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~h   36 (305)
                      ||.|..|+..|.++..|..||+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999999999999999653

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.5e-05  Score=36.81  Aligned_cols=24  Identities=33%  Similarity=0.529  Sum_probs=12.4

Q ss_pred             ccCCCcccccCcHHHHHHHHHhCC
Q psy4409         177 VCMVCPYHCRQNESMKRHLRKHTK  200 (305)
Q Consensus       177 ~C~~C~~~f~~~~~l~~H~~~h~~  200 (305)
                      .|..||+.|.-.+.|++|..+|++
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            355555555555555555555544

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.3e-05  Score=36.73  Aligned_cols=28  Identities=43%  Similarity=0.935  Sum_probs=25.6

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +||.|.+|.++....+.|..|+++.|..
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            6999999999999999999999987753

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.8e-05  Score=36.54  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=23.8

Q ss_pred             ccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      ..|..||+.|...+.|.+|...|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            57999999999999999999998874

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=3.9e-05  Score=34.78  Aligned_cols=26  Identities=35%  Similarity=0.600  Sum_probs=20.9

Q ss_pred             ccCCCCccCCCcHHHHHHHHhhCCCC
Q psy4409          77 TCLVCDYHSPRSIDMRRHIRRHTGEK  102 (305)
Q Consensus        77 ~C~~C~~~f~~~~~l~~H~~~h~~~~  102 (305)
                      +|+.|.+.|.++..|+.|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57888888888888888888887764

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.48  E-value=2.9e-05  Score=36.10  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=23.0

Q ss_pred             CcccCCC--CCCcCcChHHHHhhhhhc
Q psy4409          12 KPYTCYF--CNFKSAHMSSINNHLKIK   36 (305)
Q Consensus        12 ~~~~C~~--C~~~f~~~~~l~~H~~~h   36 (305)
                      .||.|+.  |++.|+..+.|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            6899997  999999999999998876

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.40  E-value=4.1e-05  Score=35.58  Aligned_cols=25  Identities=44%  Similarity=0.830  Sum_probs=17.7

Q ss_pred             CCccCcc--chhhcCChHHHHHHHHhc
Q psy4409         202 KPYECGF--CSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       202 ~~~~C~~--C~~~f~~~~~l~~H~~~h  226 (305)
                      .||.|+.  |++.|..++.|.+|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4677766  777777777777776654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.38  E-value=6.2e-05  Score=38.67  Aligned_cols=29  Identities=24%  Similarity=0.645  Sum_probs=20.4

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCCC
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKDK  202 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  202 (305)
                      +.|.|.+|++.|.+.+.|--||+.|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            55777777777777777777777775543

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.37  E-value=4.4e-05  Score=34.02  Aligned_cols=23  Identities=35%  Similarity=0.897  Sum_probs=12.0

Q ss_pred             ccCccchhhcCChHHHHHHHHhc
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      |+|..|..+|..++.|.+|.+.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            44555555555555555554443

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=9.5e-05  Score=34.61  Aligned_cols=28  Identities=32%  Similarity=0.750  Sum_probs=20.9

Q ss_pred             CCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409         102 KPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      +||.|.+|...-...+.|..|+++.|..
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            4677777777777777888888777653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.35  E-value=9.1e-05  Score=32.98  Aligned_cols=24  Identities=21%  Similarity=0.580  Sum_probs=22.5

Q ss_pred             ccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          14 YTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      |+|..|.+.|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999875

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.5e-05  Score=35.68  Aligned_cols=28  Identities=32%  Similarity=0.864  Sum_probs=20.7

Q ss_pred             CCccCccchhhcCChHHHHHHHHhcCCc
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQHSY  229 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~  229 (305)
                      +||+|.+|..--.+++.|..|++..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            4677888877777778888887776653

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00012  Score=37.64  Aligned_cols=27  Identities=37%  Similarity=0.762  Sum_probs=22.9

Q ss_pred             CCCCCeeCCcCcccccChHHHHHHHHH
Q psy4409          99 TGEKPFKCNFCFQCFTQNVSLQTHIRI  125 (305)
Q Consensus        99 ~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (305)
                      +|.+||.|.+|++.|.+...+.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            367899999999999999999888754

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=5.5e-05  Score=35.25  Aligned_cols=23  Identities=39%  Similarity=1.133  Sum_probs=19.3

Q ss_pred             CccCccchhhcCChHHHHHHHHh
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKD  225 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~  225 (305)
                      ||.|..|+..|.++..|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            67888888888888888888874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=9e-05  Score=38.18  Aligned_cols=25  Identities=32%  Similarity=0.701  Sum_probs=23.5

Q ss_pred             cCCCcccCCCCCCcCcChHHHHhhh
Q psy4409           9 SGEKPYTCYFCNFKSAHMSSINNHL   33 (305)
Q Consensus         9 ~~~~~~~C~~C~~~f~~~~~l~~H~   33 (305)
                      +|.|||.|..|++.|--+..+.+|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhh
Confidence            5789999999999999999999997

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0001  Score=33.79  Aligned_cols=26  Identities=46%  Similarity=0.970  Sum_probs=24.4

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      +||+|..|.+.-...+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999874

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=9.1e-05  Score=34.61  Aligned_cols=27  Identities=30%  Similarity=0.818  Sum_probs=24.6

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      +||+|.+|.......+.|..|++.-|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            699999999999999999999987665

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.16  E-value=0.00011  Score=35.19  Aligned_cols=26  Identities=27%  Similarity=0.489  Sum_probs=22.8

Q ss_pred             cccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      ||.|.+|++.|+.+..|.+|.+.-|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            79999999999999999999865543

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.14  E-value=0.00015  Score=37.21  Aligned_cols=29  Identities=21%  Similarity=0.630  Sum_probs=26.0

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhhcccc
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      .+.|.|.+|++.|.+-..|--|++.|..+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcch
Confidence            46799999999999999999999888654

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00016  Score=33.19  Aligned_cols=25  Identities=32%  Similarity=0.752  Sum_probs=11.9

Q ss_pred             CCccCccchhhcCChHHHHHHHHhc
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      +||+|..|...-...+.|..|++.|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            3444444444444444444444443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.08  E-value=0.00012  Score=34.99  Aligned_cols=26  Identities=54%  Similarity=1.073  Sum_probs=21.7

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      ||.|.+|++.|..+.-|.+|..+-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            68888999999888888888877665

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.00038  Score=32.26  Aligned_cols=28  Identities=25%  Similarity=0.565  Sum_probs=19.1

Q ss_pred             CCcccCCCcccccCcHHHHHHHHHhCCC
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRKHTKD  201 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  201 (305)
                      .-|.|..|...|+..-.|+.||..|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            3466777777777777777777777653

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00012  Score=35.10  Aligned_cols=26  Identities=27%  Similarity=0.538  Sum_probs=23.0

Q ss_pred             CcccCCC--CCCcCcChHHHHhhh-hhcc
Q psy4409          12 KPYTCYF--CNFKSAHMSSINNHL-KIKH   37 (305)
Q Consensus        12 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~   37 (305)
                      +||.|++  |++.|+..+.-.+|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            6999998  999999999999997 6664

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00024  Score=31.59  Aligned_cols=23  Identities=35%  Similarity=0.931  Sum_probs=16.8

Q ss_pred             CccCccchhhcCChHHHHHHHHh
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKD  225 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~  225 (305)
                      ||+|..|...|..+..|+.|+..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            57777777777777777777654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.85  E-value=0.00022  Score=33.26  Aligned_cols=27  Identities=30%  Similarity=0.614  Sum_probs=17.0

Q ss_pred             CCccCcc--chhhcCChHHHHHHHHhcCC
Q psy4409         202 KPYECGF--CSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       202 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +||.|.+  |.+.|.+...|.+|...|++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhccccC
Confidence            3566655  66666666666666666654

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00041  Score=35.21  Aligned_cols=29  Identities=31%  Similarity=0.702  Sum_probs=21.8

Q ss_pred             CCCCccCcc--chhhcCChHHHHHHHHhcCC
Q psy4409         200 KDKPYECGF--CSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       200 ~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~  228 (305)
                      .++||.|..  |+..|.+...|..|..+|-.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~m   33 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEM   33 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhee
Confidence            467888854  88888888888888777643

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.73  E-value=0.00035  Score=31.17  Aligned_cols=25  Identities=32%  Similarity=0.638  Sum_probs=22.0

Q ss_pred             cccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      .|.||.|-+.|+.+..+..|++.-|
T Consensus         1 vypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             CcCCchhhHHhccccCceEEEEEec
Confidence            3899999999999999999987643

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00047  Score=34.99  Aligned_cols=28  Identities=18%  Similarity=0.415  Sum_probs=24.6

Q ss_pred             CCCcccCC--CCCCcCcChHHHHhhhhhcc
Q psy4409          10 GEKPYTCY--FCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        10 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~   37 (305)
                      .++||.|.  -|+.+|.+...|..|.+.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            48999995  59999999999999987764

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.69  E-value=0.00048  Score=30.72  Aligned_cols=24  Identities=46%  Similarity=0.967  Sum_probs=16.3

Q ss_pred             ccCccchhhcCChHHHHHHHHhcC
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~hh  227 (305)
                      |.|+.|-+.|+.+..+..|.+.-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            667777777777777777766543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00047  Score=31.55  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=22.7

Q ss_pred             cccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      .|.||.|.-....++.|+.|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            5899999999999999999997655

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00023  Score=34.02  Aligned_cols=22  Identities=41%  Similarity=0.822  Sum_probs=15.3

Q ss_pred             CCccCcc--chhhcCChHHHHHHH
Q psy4409         202 KPYECGF--CSLKFSRRDNLRRHL  223 (305)
Q Consensus       202 ~~~~C~~--C~~~f~~~~~l~~H~  223 (305)
                      +||.|.+  |++.|++.+.-.+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccccCCChhhhhcchhhhhhhc
Confidence            4677766  777777777777776

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.0012  Score=29.30  Aligned_cols=21  Identities=48%  Similarity=0.950  Sum_probs=10.3

Q ss_pred             CeeCCcCcccccChHHHHHHH
Q psy4409         103 PFKCNFCFQCFTQNVSLQTHI  123 (305)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~  123 (305)
                      ||+|..|+..|..+..|+.||
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            344555555555555554444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00077  Score=30.94  Aligned_cols=25  Identities=20%  Similarity=0.529  Sum_probs=22.8

Q ss_pred             cccCCCCCCcCcChHHHHhhhhhcc
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      |-+|+.|++...++..|+.|-++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999998874

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00078  Score=30.80  Aligned_cols=26  Identities=35%  Similarity=0.782  Sum_probs=20.8

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      .|+||.|+-....++.|+.|++.-|.
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CccCCcchhheeehhhhhHHhhhccc
Confidence            37888888888888888888876553

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.001  Score=30.30  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             cccCCCCCCcCcChHHHHhhhh
Q psy4409          13 PYTCYFCNFKSAHMSSINNHLK   34 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~   34 (305)
                      ||.|+.||+.|-.+..|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7999999999999999988863

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00098  Score=30.57  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=14.2

Q ss_pred             ccCccchhhcCChHHHHHHHHhc
Q psy4409         204 YECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       204 ~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      -+|+.|+.+.+++..|+.|.+.|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            35666666666666666666554

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.35  E-value=0.00087  Score=31.16  Aligned_cols=28  Identities=21%  Similarity=0.403  Sum_probs=24.4

Q ss_pred             CcccCCC--CCCcCcChHHHHhhhhhcccc
Q psy4409          12 KPYTCYF--CNFKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        12 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   39 (305)
                      +||.|..  |.+.|.+...|.+|.-+|.++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            6899986  999999999999998887653

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.0013  Score=29.98  Aligned_cols=23  Identities=35%  Similarity=0.736  Sum_probs=17.7

Q ss_pred             CccCccchhhcCChHHHHHHHHh
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKD  225 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~  225 (305)
                      ||+|+.||+.+-.+..|..|..+
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            57888888888888888887643

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0047  Score=28.63  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCC
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTG  100 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~  100 (305)
                      |.|.+|++...+...++.|+...+.
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            7888888888888888888665443

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0017  Score=34.59  Aligned_cols=25  Identities=28%  Similarity=0.656  Sum_probs=21.5

Q ss_pred             CCccCccchhhcCChHHHHHHHHhc
Q psy4409         202 KPYECGFCSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       202 ~~~~C~~C~~~f~~~~~l~~H~~~h  226 (305)
                      ..|.|..|++.|+....|+.|.-.|
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHhc
Confidence            4589999999999999999997654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.003  Score=33.64  Aligned_cols=27  Identities=11%  Similarity=0.208  Sum_probs=23.8

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      ..|.|..|+|.|.....|+.|...|--
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            469999999999999999999877653

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.60  E-value=0.0041  Score=29.97  Aligned_cols=22  Identities=18%  Similarity=0.464  Sum_probs=20.3

Q ss_pred             CcccCCCCCCcCcChHHHHhhh
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHL   33 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~   33 (305)
                      ..|.|+.||.+|++.+.|..|+
T Consensus         7 arf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cceeccccceeecChhHHHhhh
Confidence            4699999999999999999997

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0047  Score=30.09  Aligned_cols=27  Identities=11%  Similarity=0.201  Sum_probs=23.1

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      ..|.|..|++.|..+..+.+|.....+
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            359999999999999999999866554

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.007  Score=27.76  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             cCCC--CCCcCcChHHHHhhhhhcc
Q psy4409          15 TCYF--CNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        15 ~C~~--C~~~f~~~~~l~~H~~~h~   37 (305)
                      .|+.  |++.|+..+.+++|+.+|-
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGGS
T ss_pred             cCCcccHHHHhhchHHHHHHhhccC
Confidence            4765  9999999999999998774

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0068  Score=29.49  Aligned_cols=26  Identities=27%  Similarity=0.695  Sum_probs=20.6

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      .|.|..||+.|+.+..+.+|-..-.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47888899999888888888765443

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.71  E-value=0.0091  Score=28.15  Aligned_cols=27  Identities=30%  Similarity=0.716  Sum_probs=16.9

Q ss_pred             CCccCcc--chhhcCChHHHHHHHHhcCC
Q psy4409         202 KPYECGF--CSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       202 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~  228 (305)
                      +.|.|.+  |+..|...+.|..|+-+|++
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcC
Confidence            3456644  66666666666666666655

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.012  Score=29.09  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=17.8

Q ss_pred             cCCCcccccCcHHHHHHHHHhCCC
Q psy4409         178 CMVCPYHCRQNESMKRHLRKHTKD  201 (305)
Q Consensus       178 C~~C~~~f~~~~~l~~H~~~h~~~  201 (305)
                      |+.=++.|.....|..||++|+|+
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            444556688888888888888774

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.015  Score=26.60  Aligned_cols=21  Identities=29%  Similarity=0.766  Sum_probs=14.0

Q ss_pred             Ccc--chhhcCChHHHHHHHHhc
Q psy4409         206 CGF--CSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       206 C~~--C~~~f~~~~~l~~H~~~h  226 (305)
                      |+.  |++.|...+.++.|+-+|
T Consensus         4 CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           4 CPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCSTTCCCEESSHHHHHHHHGGG
T ss_pred             CCcccHHHHhhchHHHHHHhhcc
Confidence            444  777777777777776554

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.94  E-value=0.011  Score=28.43  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=17.2

Q ss_pred             CccCccchhhcCChHHHHHHHH
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLK  224 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~  224 (305)
                      .|.|+.||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4778888888888888888753

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.32  E-value=0.021  Score=27.83  Aligned_cols=29  Identities=31%  Similarity=0.610  Sum_probs=24.9

Q ss_pred             CCCcccCCCCCCcCcChHHHHhhhhhccc
Q psy4409          10 GEKPYTCYFCNFKSAHMSSINNHLKIKHL   38 (305)
Q Consensus        10 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   38 (305)
                      ++-.|+|.+|.+.|+..+.+-+|..+-|.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            45689999999999999999999876554

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.068  Score=24.62  Aligned_cols=22  Identities=27%  Similarity=0.523  Sum_probs=15.1

Q ss_pred             cccCCCcccccCcHHHHHHHHH
Q psy4409         176 YVCMVCPYHCRQNESMKRHLRK  197 (305)
Q Consensus       176 ~~C~~C~~~f~~~~~l~~H~~~  197 (305)
                      |.|..||+..++...++.|...
T Consensus         3 ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEee
Confidence            5677777777777777777443

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.68  E-value=0.041  Score=25.86  Aligned_cols=28  Identities=36%  Similarity=0.694  Sum_probs=23.2

Q ss_pred             CCcccCC--CcccccCcHHHHHHHHHhCCC
Q psy4409         174 YRYVCMV--CPYHCRQNESMKRHLRKHTKD  201 (305)
Q Consensus       174 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  201 (305)
                      +.|.|..  |+..|.....|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            4566765  999999999999999999874

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.41  E-value=0.062  Score=26.13  Aligned_cols=28  Identities=21%  Similarity=0.583  Sum_probs=19.7

Q ss_pred             CCCeeCCcCcccccChHHHHHHHHHhcC
Q psy4409         101 EKPFKCNFCFQCFTQNVSLQTHIRIKHT  128 (305)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~  128 (305)
                      +..|.|.+|.+.|...+.+.+|..+-|.
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            3457777777777777777777766554

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.93  E-value=0.091  Score=27.67  Aligned_cols=30  Identities=27%  Similarity=0.727  Sum_probs=22.7

Q ss_pred             CCCCeeCCcCcccccChHHHHHHHHHhcCc
Q psy4409         100 GEKPFKCNFCFQCFTQNVSLQTHIRIKHTR  129 (305)
Q Consensus       100 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  129 (305)
                      .+.|-.|++|+.......+|++|+..-|-.
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~   50 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSC
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence            356788888888888888888888775543

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.052  Score=31.33  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=17.3

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCccc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQC  112 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  112 (305)
                      |.|+.|++.|.....+   ...-.....|.|..|+..
T Consensus        15 y~Cp~C~~~ys~Lda~---~L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          15 FKCPVCSSTFTDLEAN---QLFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             EECSSSCCEEEHHHHH---HHEETTTTEEBCSSSCCB
T ss_pred             eECCCCCCCcchhhHH---HhcCcCCCeEEecCCCCE
Confidence            6666666666433332   222233345666666543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.025  Score=33.31  Aligned_cols=27  Identities=19%  Similarity=0.360  Sum_probs=23.4

Q ss_pred             CCCcccCCCCCCcCcChHHHHhhhhhc
Q psy4409          10 GEKPYTCYFCNFKSAHMSSINNHLKIK   36 (305)
Q Consensus        10 ~~~~~~C~~C~~~f~~~~~l~~H~~~h   36 (305)
                      |...|-|..|++.|.+...|..|+++-
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksK   38 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSK   38 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CCCEEecccccCccCCHHHHHHHHccc
Confidence            445699999999999999999998663

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.02  E-value=0.082  Score=27.84  Aligned_cols=24  Identities=29%  Similarity=0.537  Sum_probs=13.8

Q ss_pred             CCcccCCCcccccCcHHHHHHHHH
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRK  197 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~  197 (305)
                      .|-.|++|+.......+|++|+..
T Consensus        23 qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666543

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.63  E-value=0.059  Score=24.21  Aligned_cols=17  Identities=24%  Similarity=0.569  Sum_probs=8.3

Q ss_pred             chhhcCChHHHHHHHHh
Q psy4409         209 CSLKFSRRDNLRRHLKD  225 (305)
Q Consensus       209 C~~~f~~~~~l~~H~~~  225 (305)
                      |++.|....+|..|.-.
T Consensus         9 c~kafkkhnqlkvhqf~   25 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQFS   25 (28)
T ss_dssp             CCCEESSHHHHHHHHHH
T ss_pred             chHHHhhccceEEEeec
Confidence            45555554455554443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.51  E-value=0.081  Score=25.98  Aligned_cols=27  Identities=15%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             cccCCC--CC---CcCcChHHHHhhhhhcccc
Q psy4409          13 PYTCYF--CN---FKSAHMSSINNHLKIKHLE   39 (305)
Q Consensus        13 ~~~C~~--C~---~~f~~~~~l~~H~~~h~~~   39 (305)
                      .|.|..  |.   +.|.....|..||+.|.++
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            466653  64   4699999999999999874

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.084  Score=30.40  Aligned_cols=22  Identities=9%  Similarity=0.380  Sum_probs=16.9

Q ss_pred             ccCCCcccCCCCCCcCcChHHH
Q psy4409           8 HSGEKPYTCYFCNFKSAHMSSI   29 (305)
Q Consensus         8 h~~~~~~~C~~C~~~f~~~~~l   29 (305)
                      -+..+-|.||.|+++|+....+
T Consensus         9 ~~~~~~y~Cp~C~~~ys~Lda~   30 (62)
T d1vd4a_           9 STNRASFKCPVCSSTFTDLEAN   30 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHH
T ss_pred             cccCCceECCCCCCCcchhhHH
Confidence            3456779999999999875544

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=0.16  Score=28.83  Aligned_cols=25  Identities=20%  Similarity=0.592  Sum_probs=19.4

Q ss_pred             CcccCCCCccCCCcHHHHHHHHhhC
Q psy4409          75 NFTCLVCDYHSPRSIDMRRHIRRHT   99 (305)
Q Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~~h~   99 (305)
                      .|+|.+|.-.|.+...|..|+..|.
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhcc
Confidence            4888888888888888888877763

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.15  E-value=0.066  Score=31.46  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             CCcccCCCcccccCcHHHHHHHHH
Q psy4409         174 YRYVCMVCPYHCRQNESMKRHLRK  197 (305)
Q Consensus       174 ~~~~C~~C~~~f~~~~~l~~H~~~  197 (305)
                      ..|.|..|++.|.+...|..|++.
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            457899999999999888888653

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.13  E-value=0.17  Score=22.37  Aligned_cols=20  Identities=30%  Similarity=0.657  Sum_probs=15.3

Q ss_pred             cCccchhhcCChHHHHHHHH
Q psy4409         205 ECGFCSLKFSRRDNLRRHLK  224 (305)
Q Consensus       205 ~C~~C~~~f~~~~~l~~H~~  224 (305)
                      .||+|+..|.++..-..|..
T Consensus         2 vcpycslrf~sp~lk~ehe~   21 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEHES   21 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHhhh
Confidence            58888888888777777754

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.15  Score=23.28  Aligned_cols=18  Identities=44%  Similarity=0.615  Sum_probs=12.3

Q ss_pred             chhhcCChHHHHHHHHhc
Q psy4409         209 CSLKFSRRDNLRRHLKDQ  226 (305)
Q Consensus       209 C~~~f~~~~~l~~H~~~h  226 (305)
                      |++.|+++..|..|++-.
T Consensus         8 c~kifsnrqylnhh~kyq   25 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKKYQ   25 (30)
T ss_dssp             TCCEESSHHHHHHHHHHG
T ss_pred             chhhhccHHHHHhHHHHH
Confidence            777777777777776543

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.74  E-value=0.23  Score=22.79  Aligned_cols=19  Identities=32%  Similarity=0.934  Sum_probs=11.9

Q ss_pred             chhhcCChHHHHHHHHhcC
Q psy4409         209 CSLKFSRRDNLRRHLKDQH  227 (305)
Q Consensus       209 C~~~f~~~~~l~~H~~~hh  227 (305)
                      |...|+++..+..|..+-|
T Consensus        10 cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3          10 CDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CCCEESSHHHHHHHHHHHT
T ss_pred             cceEEeehHHHHHHHhhhc
Confidence            6666666666666665544

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=87.69  E-value=0.12  Score=26.09  Aligned_cols=23  Identities=43%  Similarity=1.042  Sum_probs=13.6

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQ  111 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  111 (305)
                      |.|..||..             +.++-|-+|++|+.
T Consensus         6 ~vC~vCGyi-------------~~g~~Pe~CPvCg~   28 (36)
T d1yuza2           6 HLCPICGYI-------------HKGEDFEKCPICFR   28 (36)
T ss_dssp             EECSSSCCE-------------EESSCCSBCTTTCC
T ss_pred             EECCCCCCE-------------eeCCCCCcCCCCCC
Confidence            667777663             23445566777664

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.35  E-value=0.43  Score=21.81  Aligned_cols=26  Identities=27%  Similarity=0.566  Sum_probs=17.5

Q ss_pred             CeeCCc--CcccccChHHHHHHHHHhcC
Q psy4409         103 PFKCNF--CFQCFTQNVSLQTHIRIKHT  128 (305)
Q Consensus       103 ~~~C~~--C~~~f~~~~~l~~H~~~~H~  128 (305)
                      .|+|..  |..+|.++..+..|....|.
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhcc
Confidence            466643  77777777777777766543

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.17  E-value=0.14  Score=25.98  Aligned_cols=23  Identities=30%  Similarity=0.850  Sum_probs=13.6

Q ss_pred             cccCCCCccCCCcHHHHHHHHhhCCCCCeeCCcCcc
Q psy4409          76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQ  111 (305)
Q Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  111 (305)
                      |.|..||..+             .++-|-.|++|+.
T Consensus         6 ~~C~vCG~i~-------------~g~~P~~CPvCg~   28 (37)
T d1nnqa2           6 YICPICGYTA-------------VDEAPEYCPVCGA   28 (37)
T ss_dssp             EECTTTCCEE-------------ESCCCSBCTTTCC
T ss_pred             EECCCCCCEe-------------cCCCCCcCCCCCC
Confidence            6677776642             2345566777664

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.36  E-value=0.54  Score=26.60  Aligned_cols=26  Identities=27%  Similarity=0.623  Sum_probs=15.1

Q ss_pred             CccCccchhhcCChHHHHHHHHhcCC
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLKDQHS  228 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~~hh~  228 (305)
                      .|+|..|...|.+...|..|+..|..
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhccH
Confidence            35666666666666666666555543

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.09  E-value=0.43  Score=23.26  Aligned_cols=22  Identities=36%  Similarity=0.727  Sum_probs=12.0

Q ss_pred             CccCccchhhcCChHHHHHHHH
Q psy4409         203 PYECGFCSLKFSRRDNLRRHLK  224 (305)
Q Consensus       203 ~~~C~~C~~~f~~~~~l~~H~~  224 (305)
                      .|.|.+|-+-..+...|.+|+.
T Consensus         7 LyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           7 LYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeehhhhhhhCCHHHHHHHHH
Confidence            3555555555555555555553

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.66  E-value=0.42  Score=22.77  Aligned_cols=21  Identities=14%  Similarity=0.254  Sum_probs=17.8

Q ss_pred             CCCCCcCcChHHHHhhhhhcc
Q psy4409          17 YFCNFKSAHMSSINNHLKIKH   37 (305)
Q Consensus        17 ~~C~~~f~~~~~l~~H~~~h~   37 (305)
                      .-|++.|.+...|..|+..-|
T Consensus         7 ~~C~~eFdtQd~LV~HinndH   27 (32)
T d2glia1           7 DGCSQEFDSQEQLVHHINSEH   27 (32)
T ss_dssp             TTCCCBCSCHHHHHHHHHHHT
T ss_pred             cccccccCCHHHHHHHccccc
Confidence            359999999999999996643

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.81  E-value=0.25  Score=24.18  Aligned_cols=29  Identities=28%  Similarity=0.209  Sum_probs=23.9

Q ss_pred             CcccCCCCCCcCcChHHHHhhhhhccccc
Q psy4409          12 KPYTCYFCNFKSAHMSSINNHLKIKHLEK   40 (305)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   40 (305)
                      +...|-.|-+.|.+...+++|+...|+..
T Consensus         2 kkltclecmrtfkssfsiwrhqvevhnqn   30 (41)
T d1wjpa3           2 KKLTCLECMRTFKSSFSIWRHQVEVHNQN   30 (41)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHHTSCCC
T ss_pred             CcccHHHHHHHHHHHHHHHHhhheecccc
Confidence            45789999999999999999987776644

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.43  E-value=0.32  Score=25.76  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=19.4

Q ss_pred             cccCCCCCCcCcChHHHHhhh
Q psy4409          13 PYTCYFCNFKSAHMSSINNHL   33 (305)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~   33 (305)
                      +-.|.+|+..|+.+..++.|+
T Consensus         6 ~~eC~lC~vKYs~~~SvrdHi   26 (48)
T d2yrka1           6 KPECTLCGVKYSARLSIRDHI   26 (48)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHH
T ss_pred             cccCcccceeeeeecchHhhh
Confidence            378999999999999999998

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.31  E-value=0.51  Score=23.00  Aligned_cols=25  Identities=28%  Similarity=0.479  Sum_probs=22.2

Q ss_pred             CCcccCCCCCCcCcChHHHHhhhhh
Q psy4409          11 EKPYTCYFCNFKSAHMSSINNHLKI   35 (305)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~   35 (305)
                      .+.|.|..|-+=+.+...|.+|+..
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHHh
Confidence            4789999999999999999999853