Psyllid ID: psy4421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHcHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEcccHHHHHHHHcccccccccccccccEccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHccccEccccHHHHHHHHccccccccccHcccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
vqeslninqcvhchltltKSTEVIVKHAQTCIsmvrpdsfkykygcyrcsyftyesnNLKKHILKhtgekpfsymYENQQYCIHCNSYISSDIKDLIEHckscshmtrpdafhFKFVCYACEYntymsgnikthlrlhlddkpykcslcnyecrqnvhlkshmksnh
Flexible Loop (DISEMBL)
vqeslninqcvHCHLTLTKSTEVIVKHAQTCismvrpdsfkYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQnvhlkshmksnh
Low Complexity Region (SEG)
VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH
Disordered region (IsUnstruct)
*****NINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVH*********
Disordered Region (DISOPRED)
VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM****
Disordered Region (DISEMBL)
VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHL********
Disordered Region (DISPRO)
****LNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVH*KS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q8VIG1	1082	RE1-silencing transcripti	no	N/A	0.724	0.111	0.279	2e-13
O54963	1069	RE1-silencing transcripti	yes	N/A	0.700	0.109	0.270	2e-13
Q6PD29	541	Zinc finger protein 513 O	yes	N/A	0.622	0.192	0.35	2e-13
Q8N8E2	541	Zinc finger protein 513 O	yes	N/A	0.622	0.192	0.35	2e-13
Q13127	1097	RE1-silencing transcripti	no	N/A	0.724	0.110	0.279	4e-13
Q5FWU5	541	Zinc finger protein 513 O	no	N/A	0.622	0.192	0.35	5e-13
Q9NPA5	681	Zinc finger protein 64 ho	no	N/A	0.646	0.158	0.330	1e-10
Q9PVG3	529	RE1-silencing transcripti	N/A	N/A	0.724	0.228	0.279	3e-10
Q2EI21	1501	RE1-silencing transcripti	N/A	N/A	0.700	0.077	0.277	9e-10
Q99KE8	643	Zinc finger protein 64 OS	no	N/A	0.634	0.164	0.303	5e-09

>sp|Q8VIG1|REST_MOUSE RE1-silencing transcription factor OS=Mus musculus GN=Rest PE=2 SV=2

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 32  ISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISS 91
           +  VR  + +  Y C  C Y + +  +L +H+  H+GEKPF         C  CN Y++S
Sbjct: 287 VQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFK--------CDQCN-YVAS 337

Query: 92  DIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY 151
           +  ++  H +   +  +P        C  C+Y T    N K H+ LH++ + + C +C+Y
Sbjct: 338 NQHEVTRHARQVHNGPKP------LNCPHCDYKTADRSNFKKHVELHVNPRQFNCPVCDY 391

Query: 152 ECRQNVHLKSHMKSNH 167
              +  +L+ H KS H
Sbjct: 392 AASKKCNLQYHFKSKH 407

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.
Mus musculus (taxid: 10090)

>sp|O54963|REST_RAT RE1-silencing transcription factor OS=Rattus norvegicus GN=Rest PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 27/144 (18%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPF--------------------SYMYENQQYCI 83
           Y C +C+YF+ E NN  +H+  HTGE+P+                    ++  E    C 
Sbjct: 275 YTCSKCNYFSTEKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCD 334

Query: 84  HCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKP 143
            CN Y++S+  ++  H +   +  +P        C  C+Y T    N K H+ LH++ + 
Sbjct: 335 QCN-YVASNQHEVTRHARQVHNGPKP------LNCPHCDYKTADRSNFKKHVELHVNPRQ 387

Query: 144 YKCSLCNYECRQNVHLKSHMKSNH 167
           + C +C+Y   +  +L+ H KS H
Sbjct: 388 FNCPVCDYAASKKCNLQYHFKSKH 411

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Rattus norvegicus (taxid: 10116)

>sp|Q6PD29|ZN513_MOUSE Zinc finger protein 513 OS=Mus musculus GN=Znf513 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H    
Sbjct: 360 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRH---- 406

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
               R       + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct: 407 ---QRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 463

Transcriptional regulator that plays a role in retinal development and maintenance.

Mus musculus (taxid: 10090)

>sp|Q8N8E2|ZN513_HUMAN Zinc finger protein 513 OS=Homo sapiens GN=ZNF513 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H    
Sbjct: 360 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRH---- 406

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
               R       + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct: 407 ---QRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 463

Transcriptional regulator that plays a role in retinal development and maintenance.

Homo sapiens (taxid: 9606)

>sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo sapiens GN=REST PE=1 SV=3

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 32  ISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISS 91
           +  VR  + +  Y C  C Y + +  +L +H+  H+GEKPF         C  C SY++S
Sbjct: 292 VQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFK--------CDQC-SYVAS 342

Query: 92  DIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY 151
           +  ++  H +   +  +P        C  C+Y T    N K H+ LH++ + + C +C+Y
Sbjct: 343 NQHEVTRHARQVHNGPKP------LNCPHCDYKTADRSNFKKHVELHVNPRQFNCPVCDY 396

Query: 152 ECRQNVHLKSHMKSNH 167
              +  +L+ H KS H
Sbjct: 397 AASKKCNLQYHFKSKH 412

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Homo sapiens (taxid: 9606)

>sp|Q5FWU5|ZN513_RAT Zinc finger protein 513 OS=Rattus norvegicus GN=Znf513 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H    
Sbjct: 360 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRH---- 406

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
               R       + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct: 407 ---QRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 463

Transcriptional regulator that plays a role in retinal development and maintenance.

Rattus norvegicus (taxid: 10116)

>sp|Q9NPA5|ZF64A_HUMAN Zinc finger protein 64 homolog, isoforms 1 and 2 OS=Homo sapiens GN=ZFP64 PE=1 SV=3

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 16/124 (12%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           Y C  C Y   +S++L KH+  H+ E+PF         C  C  Y S +   L  H +S 
Sbjct: 203 YKCKTCDYAAADSSSLNKHLRIHSDERPFK--------CQIC-PYASRNSSQLTVHLRSH 253

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
           +     DA    F C+ C     +S ++K H+R+H  +KP+KC  CN  C    +LKSH+
Sbjct: 254 TG----DA---PFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKSHI 306

Query: 164 KSNH 167
           +  H
Sbjct: 307 RIKH 310

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9PVG3|RESTB_XENLA RE1-silencing transcription factor B (Fragment) OS=Xenopus laevis GN=rest-b PE=2 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 15/136 (11%)

Query: 32  ISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISS 91
           I  +R  + +  Y C  C Y + +  +L +H+  H+GEKPF         C  C SY++S
Sbjct: 288 IQHIRTHTGERPYQCILCPYSSSQKTHLTRHMRTHSGEKPFK--------CEQC-SYVAS 338

Query: 92  DIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY 151
           +  ++  H +   +  +P        C  C+Y T    N K H+ LH++ + + C +C+Y
Sbjct: 339 NQHEVTRHARQVHNGPKP------LTCPHCDYKTADRSNFKKHVELHVNPRQFLCPVCDY 392

Query: 152 ECRQNVHLKSHMKSNH 167
              +  +L+ H+KS H
Sbjct: 393 AASKKCNLQYHIKSRH 408

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells (By similarity). Plays a role in the early development of the nervous system and is required for proper patterning of the neuroectoderm during gastrulation. This involves the correct speciation of the neuroepithelial domain and adequate development of the non-neural ectoderm.

Xenopus laevis (taxid: 8355)

>sp|Q2EI21|RESTA_XENLA RE1-silencing transcription factor A OS=Xenopus laevis GN=rest-a PE=2 SV=1

 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 27/144 (18%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPF--------------------SYMYENQQYCI 83
           Y C +CSYF+   NN  +HI  HTGE+P+                    ++  E    C 
Sbjct: 274 YTCSQCSYFSDRKNNYIQHIRTHTGERPYQCIICLYSSSQKTHLTRHMRTHSGEKPFKCE 333

Query: 84  HCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKP 143
            C SY++S+  ++  H +   +  +P        C  C+Y T    N K H+ LH++ + 
Sbjct: 334 QC-SYVASNQHEVTRHARQVHNGPKP------LTCPHCDYKTADRSNFKKHVELHVNPRQ 386

Query: 144 YKCSLCNYECRQNVHLKSHMKSNH 167
           + C +C+Y   +  +L+ H+KS H
Sbjct: 387 FLCPVCDYAASKKCNLQYHIKSRH 410

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells (By similarity). Plays a role in the early development of the nervous system and is required for proper patterning of the neuroectoderm during gastrulation. This involves the correct speciation of the neuroepithelial domain and adequate development of the non-neural ectoderm.

Xenopus laevis (taxid: 8355)

>sp|Q99KE8|ZFP64_MOUSE Zinc finger protein 64 OS=Mus musculus GN=Zfp64 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 16/122 (13%)

Query: 46  CYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSH 105
           C+ C Y   +S++LKKH+  H+ E+P+       Q C     Y S +   L  H +S + 
Sbjct: 358 CHLCDYAAVDSSSLKKHLRIHSDERPYKC-----QLC----PYASRNSSQLTVHLRSHTG 408

Query: 106 MTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKS 165
            T        F C+ C     +S ++K H+ +H  +KP+KC  C+  C    +LKSH++ 
Sbjct: 409 DT-------PFQCWLCSAKFKISSDLKRHMIVHSGEKPFKCEFCDVRCTMKANLKSHIRI 461

Query: 166 NH 167
            H
Sbjct: 462 KH 463

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
260819188	409	hypothetical protein BRAFLDRAFT_185156 [	0.700	0.286	0.360	2e-13
444516263	979	RE1-silencing transcription factor [Tupa	0.652	0.111	0.314	4e-13
332243333	632	PREDICTED: zinc finger protein 513 [Noma	0.622	0.164	0.35	2e-12
432096793	538	Zinc finger protein 513 [Myotis davidii]	0.622	0.193	0.35	3e-12
148705403	570	zinc finger protein 513, isoform CRA_b [	0.622	0.182	0.35	4e-12
311262204	1037	PREDICTED: RE1-silencing transcription f	0.724	0.116	0.279	5e-12
395851383	1172	PREDICTED: RE1-silencing transcription f	0.724	0.103	0.279	6e-12
295444870	539	zinc finger protein 513 isoform 2 [Mus m	0.622	0.192	0.35	7e-12
390460850	1244	PREDICTED: LOW QUALITY PROTEIN: RE1-sile	0.724	0.097	0.279	7e-12
431911929	539	Zinc finger protein 513 [Pteropus alecto	0.622	0.192	0.35	7e-12

>gi|260819188|ref|XP_002604919.1| hypothetical protein BRAFLDRAFT_185156 [Branchiostoma floridae] gi|229290248|gb|EEN60929.1| hypothetical protein BRAFLDRAFT_185156 [Branchiostoma floridae]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 66/133 (49%), Gaps = 16/133 (12%)

Query: 35  VRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIK 94
           +R  S +  Y C RCSY   +S++LKKH+  HT E+PF       Q C + +   S  I 
Sbjct: 137 LRVHSGEKPYACSRCSYAAADSSSLKKHVRTHTNERPFKC-----QICPYASRNSSQLIV 191

Query: 95  DLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECR 154
            L  H   C            F C  CE    +  ++K H+R H  DKPYKC LC+Y C 
Sbjct: 192 HLRSHTGDCP-----------FHCQLCEAKFKIKSDLKRHMRTHTGDKPYKCDLCDYRCA 240

Query: 155 QNVHLKSHMKSNH 167
              +LK H+++NH
Sbjct: 241 MKGNLKVHVRNNH 253

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444516263|gb|ELV11094.1| RE1-silencing transcription factor [Tupaia chinensis]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 15/124 (12%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           Y C +C+YF+   NN  +H+  HTGEKPF         C  C SY++S+  ++  H +  
Sbjct: 252 YTCGKCNYFSDRKNNYVQHVRTHTGEKPFK--------CDQC-SYVASNQHEVTRHARQV 302

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
            +  +P        C  C+Y T    N K H+ LH++ + + C +C+Y   +  +L+ H 
Sbjct: 303 HNGPKP------LNCPHCDYKTADRSNFKKHVELHVNPRQFNCPVCDYAASKKCNLQYHF 356

Query: 164 KSNH 167
           KS H
Sbjct: 357 KSKH 360

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332243333|ref|XP_003270833.1| PREDICTED: zinc finger protein 513 [Nomascus leucogenys]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H    
Sbjct: 451 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRH---- 497

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
               R       + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct: 498 ---QRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 554

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432096793|gb|ELK27371.1| Zinc finger protein 513 [Myotis davidii]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H    
Sbjct: 357 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRH---- 403

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
               R       + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct: 404 ---QRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 460

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148705403|gb|EDL37350.1| zinc finger protein 513, isoform CRA_b [Mus musculus]

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H    
Sbjct: 389 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRH---- 435

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
               R       + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct: 436 ---QRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 492

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|311262204|ref|XP_003129069.1| PREDICTED: RE1-silencing transcription factor [Sus scrofa] gi|335293561|ref|XP_003356995.1| PREDICTED: RE1-silencing transcription factor-like [Sus scrofa] gi|456753171|gb|JAA74113.1| RE1-silencing transcription factor [Sus scrofa]

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 32  ISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISS 91
           +  VR  + +  Y C  C Y + +  +L +H+  H+GEKPF         C  C SY++S
Sbjct: 291 VQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFK--------CDQC-SYVAS 341

Query: 92  DIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY 151
           +  ++  H +   +  +P        C  C+Y T    N K H+ LH++ + + C +C+Y
Sbjct: 342 NQHEVTRHARQVHNGPKP------LSCPHCDYKTADRSNFKKHVELHVNPRQFNCPVCDY 395

Query: 152 ECRQNVHLKSHMKSNH 167
              +  +L+ H KS H
Sbjct: 396 AASKKCNLQYHFKSKH 411

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395851383|ref|XP_003798239.1| PREDICTED: RE1-silencing transcription factor, partial [Otolemur garnettii]

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 32  ISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISS 91
           +  VR  + +  Y C  C Y + +  +L +H+  H+GEKPF         C  C SY++S
Sbjct: 397 VQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFK--------CDQC-SYVAS 447

Query: 92  DIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY 151
           +  ++  H +   +  +P        C  C+Y T    N K H+ LH++ + + C +C+Y
Sbjct: 448 NQHEVTRHARQVHNGPKP------LNCPHCDYKTADRSNFKKHVELHVNPRQFNCPVCDY 501

Query: 152 ECRQNVHLKSHMKSNH 167
              +  +L+ H KS H
Sbjct: 502 AASKKCNLQYHFKSKH 517

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|295444870|ref|NP_001171372.1| zinc finger protein 513 isoform 2 [Mus musculus] gi|74178313|dbj|BAE32430.1| unnamed protein product [Mus musculus]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H    
Sbjct: 358 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRH---- 404

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
               R       + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct: 405 ---QRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 461

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390460850|ref|XP_002745853.2| PREDICTED: LOW QUALITY PROTEIN: RE1-silencing transcription factor [Callithrix jacchus]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 32  ISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISS 91
           +  VR  + +  Y C  C Y + +  +L +H+  H+GEKPF         C  C SY++S
Sbjct: 459 VQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFK--------CDQC-SYVAS 509

Query: 92  DIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY 151
           +  ++  H +   +  +P        C  C+Y T    N K H+ LH++ + + C +C+Y
Sbjct: 510 NQHEVTRHARQVHNGPKP------LNCPHCDYKTADRSNFKKHVELHVNPRQFNCPVCDY 563

Query: 152 ECRQNVHLKSHMKSNH 167
              +  +L+ H KS H
Sbjct: 564 AASKKCNLQYHFKSKH 579

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431911929|gb|ELK14073.1| Zinc finger protein 513 [Pteropus alecto]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H    
Sbjct: 358 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRH---- 404

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
               R       + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct: 405 ---QRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 461

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
UNIPROTKB|F1NUB6	186	ZNF513 "Uncharacterized protei	0.622	0.559	0.341	5.4e-15
ZFIN|ZDB-GENE-110914-29	350	si:ch211-245n8.2 "si:ch211-245	0.892	0.425	0.278	1.5e-14
UNIPROTKB|Q8N8E2	541	ZNF513 "Zinc finger protein 51	0.622	0.192	0.35	2.2e-14
MGI|MGI:2141255	541	Zfp513 "zinc finger protein 51	0.622	0.192	0.35	2.2e-14
RGD|1310456	541	Zfp513 "zinc finger protein 51	0.622	0.192	0.35	2.2e-14
UNIPROTKB|Q5FWU5	541	Znf513 "Zinc finger protein 51	0.622	0.192	0.35	2.2e-14
UNIPROTKB|E1B7S0	542	ZNF513 "Uncharacterized protei	0.622	0.191	0.35	2.2e-14
UNIPROTKB|E2RFE2	543	ZNF513 "Uncharacterized protei	0.622	0.191	0.35	2.2e-14
UNIPROTKB|E1BQQ6	947	ZNF507 "Uncharacterized protei	0.275	0.048	0.456	4.9e-14
UNIPROTKB|E7EUE3	613	CTCFL "Transcriptional repress	0.850	0.231	0.291	1.2e-13

UNIPROTKB|F1NUB6 ZNF513 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 41/120 (34%), Positives = 65/120 (54%)

Query:    44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
             + C  C + T+  N+L +H+  H+GEKPF+        C  C  Y S+ + +L  H +  
Sbjct:    27 FACSLCPFVTHYPNHLARHMKTHSGEKPFA--------CPLC-PYASAHLDNLKRHQRVH 77

Query:   104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
             +   +P      + C  C+Y      N+K H R+H  DKP++CSLC+Y C Q+++LK HM
Sbjct:    78 TG-EKP------YKCQLCDYACGNLANLKRHGRIHSGDKPFQCSLCSYSCNQSMNLKRHM 130

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-110914-29 si:ch211-245n8.2 "si:ch211-245n8.2" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 47/169 (27%), Positives = 80/169 (47%)

Query:    10 CVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGE 69
             C  C  + ++S+  + KH +T    V+P      + C +C     +S++LK+H++ HTGE
Sbjct:   180 CTQCGKSFSQSSN-LNKHMKTHTG-VKP------FTCTQCGKSFSQSSDLKQHMMIHTGE 231

Query:    70 KPFSYMYENQQYC--IHCNSYISSDIKDLIEHCKSC-------SHMTRPDAFHF---KFV 117
             KPF+     + +    H N +    I++    C  C       S + +    H     F 
Sbjct:   232 KPFTCTQCGKSFSRSSHLNEHTMIHIREKPFTCTQCGKRFSLSSSLNKHTRIHTGEKPFT 291

Query:   118 CYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN 166
             C  C  +   S N+K H+R+H  +KP++C+ C     Q+ HL  HM S+
Sbjct:   292 CTQCRKSFSQSSNLKKHMRIHTGEKPFRCTQCGKSFSQSSHLNKHMMSH 340

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q8N8E2 ZNF513 "Zinc finger protein 513" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 42/120 (35%), Positives = 63/120 (52%)

Query:    44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
             + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H +  
Sbjct:   360 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRHQRVH 410

Query:   104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
             +   +P      + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct:   411 TG-EKP------YKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 463

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0060041 "retina development in camera-type eye" evidence=IMP

MGI|MGI:2141255 Zfp513 "zinc finger protein 513" [Mus musculus (taxid:10090)]

 Score = 193 (73.0 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 42/120 (35%), Positives = 63/120 (52%)

Query:    44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
             + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H +  
Sbjct:   360 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRHQRVH 410

Query:   104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
             +   +P      + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct:   411 TG-EKP------YKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 463

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=ISO

RGD|1310456 Zfp513 "zinc finger protein 513" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 42/120 (35%), Positives = 63/120 (52%)

Query:    44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
             + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H +  
Sbjct:   360 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRHQRVH 410

Query:   104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
             +   +P      + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct:   411 TG-EKP------YKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 463

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0060041 "retina development in camera-type eye" evidence=ISO;ISS

UNIPROTKB|Q5FWU5 Znf513 "Zinc finger protein 513" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 42/120 (35%), Positives = 63/120 (52%)

Query:    44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
             + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H +  
Sbjct:   360 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRHQRVH 410

Query:   104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
             +   +P      + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct:   411 TG-EKP------YKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 463

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1B7S0 ZNF513 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 42/120 (35%), Positives = 63/120 (52%)

Query:    44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
             + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H +  
Sbjct:   361 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRHQRVH 411

Query:   104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
             +   +P      + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct:   412 TG-EKP------YKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 464

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RFE2 ZNF513 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 193 (73.0 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 42/120 (35%), Positives = 63/120 (52%)

Query:    44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
             + C  C + T+  N+L +H+  H+GEKPF         C  C  Y S+ + +L  H +  
Sbjct:   362 FACSLCPFATHYPNHLARHMKTHSGEKPFR--------CARC-PYASAHLDNLKRHQRVH 412

Query:   104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
             +   +P      + C  C Y      N+K H R+H  DKP++CSLCNY C Q+++LK HM
Sbjct:   413 TG-EKP------YKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHM 465

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BQQ6 ZNF507 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 4.9e-14, Sum P(3) = 4.9e-14
 Identities = 21/46 (45%), Positives = 27/46 (58%)

Query:   118 CYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
             C  C+Y +     ++ H R+H  DKPY+CSLC Y C     LKSHM
Sbjct:   755 CDVCDYTSTTYVGVRNHRRIHNSDKPYRCSLCGYVCSHPPSLKSHM 800

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E7EUE3 CTCFL "Transcriptional repressor CTCFL" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 47/161 (29%), Positives = 79/161 (49%)

Query:     9 QCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTG 68
             +C  C++    S E +V+H +   +  +P  FK    C  C Y + E++ LK+H+  HTG
Sbjct:   314 KCNDCNMAFVTSGE-LVRHRRYKHTHEKP--FK----CSMCKYASVEASKLKRHVRSHTG 366

Query:    69 EKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCS--HMTRPDAFHF-KFVCYACEYNT 125
             E+PF         C  C SY S D   L  H ++ S  HM    A+   +  C  C    
Sbjct:   367 ERPFQ--------CCQC-SYASRDTYKLKRHMRTHSGVHMRNLHAYSAAELKCRYCSAVF 417

Query:   126 YMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN 166
             +    +  H + H ++K +KC  C+Y C+Q  H+ +H++++
Sbjct:   418 HERYALIQHQKTHKNEKRFKCKHCSYACKQERHMTAHIRTH 458

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
KOG2462|consensus	279		99.97
KOG2462|consensus	279		99.89
KOG1074|consensus	958		99.77
KOG1074|consensus	958		99.75
KOG3608|consensus	467		99.71
KOG3608|consensus	467		99.7
KOG3576|consensus	267		99.69
KOG3576|consensus	267		99.63
KOG3623|consensus	1007		99.63
KOG3623|consensus	1007		99.43
PLN03086	567	PRLI-interacting factor K; Provisional	99.27
PHA00733	128	hypothetical protein	99.22
PHA02768	55	hypothetical protein; Provisional	99.12
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.98
PLN03086	567	PRLI-interacting factor K; Provisional	98.96
PHA00733	128	hypothetical protein	98.94
KOG3993|consensus	500		98.9
PHA02768	55	hypothetical protein; Provisional	98.71
PHA00732	79	hypothetical protein	98.51
PHA00616	44	hypothetical protein	98.47
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.37
PHA00616	44	hypothetical protein	98.29
KOG3993|consensus	500		98.26
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.23
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.19
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.18
PHA00732	79	hypothetical protein	98.12
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.07
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.02
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.81
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.69
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.6
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.5
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.47
smart00355	26	ZnF_C2H2 zinc finger.	97.41
PRK04860	160	hypothetical protein; Provisional	97.38
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.27
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.23
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.15
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.06
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.05
smart00355	26	ZnF_C2H2 zinc finger.	96.99
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.95
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.91
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.62
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.47
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.59
COG5048	467	FOG: Zn-finger [General function prediction only]	95.54
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.52
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.09
PRK04860	160	hypothetical protein; Provisional	94.91
KOG2231|consensus	669		94.58
KOG2893|consensus	341		93.77
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	93.53
COG4049	65	Uncharacterized protein containing archaeal-type C	92.93
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.92
PHA00626	59	hypothetical protein	92.27
COG5048	467	FOG: Zn-finger [General function prediction only]	92.02
KOG2231|consensus	669		91.8
KOG2482|consensus	423		91.33
KOG1146|consensus	1406		91.02
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	91.01
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	90.92
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	90.2
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.16
COG1592	166	Rubrerythrin [Energy production and conversion]	89.71
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	89.68
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	89.18
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	88.99
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	88.92
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	88.33
KOG1146|consensus	1406		87.91
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	86.68
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.68
PRK09678	72	DNA-binding transcriptional regulator; Provisional	85.99
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	85.99
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	85.83
smart00531	147	TFIIE Transcription initiation factor IIE.	85.35
COG5236	493	Uncharacterized conserved protein, contains RING Z	85.35
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	85.06
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.0
KOG2893|consensus	341		84.53
PF09845	131	DUF2072: Zn-ribbon containing protein (DUF2072); I	84.11
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	83.45
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	82.74
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	82.54
COG1592	166	Rubrerythrin [Energy production and conversion]	82.33
COG4049	65	Uncharacterized protein containing archaeal-type C	82.03
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	81.72
PF08790	28	zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IP	80.9
KOG2482|consensus	423		80.31

>KOG2462|consensus

Probab=99.97  E-value=6.1e-31  Score=181.89  Aligned_cols=134  Identities=23%  Similarity=0.346  Sum_probs=125.5

Q ss_pred             CcccccccccccCchHHHHHHhhhhhccccCCCC---CccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCccc
Q psy4421           6 NINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDS---FKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYC   82 (167)
Q Consensus         6 ~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~---~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c   82 (167)
                      .-|.|.+|++.+...++|.        +|.++|-   .++.+.|.+|++.+.+...|..|+++|+  .+.+        |
T Consensus       129 ~r~~c~eCgk~ysT~snLs--------rHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~--------C  190 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLS--------RHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCE--------C  190 (279)
T ss_pred             Cceeccccccccccccccc--------hhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcc--------c
Confidence            4589999999999999999        8888773   3677999999999999999999999998  4777        9


Q ss_pred             ccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHH
Q psy4421          83 IHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSH  162 (167)
Q Consensus        83 ~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  162 (167)
                      .+||+. |+....|.-|+++       ++||+||.|+.|++.|..+++|+.|+++|.+.|+|.|..|+|+|...+.|.+|
T Consensus       191 ~iCGKa-FSRPWLLQGHiRT-------HTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH  262 (279)
T KOG2462|consen  191 GICGKA-FSRPWLLQGHIRT-------HTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKH  262 (279)
T ss_pred             cccccc-ccchHHhhccccc-------ccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHh
Confidence            999999 9999999999999       99999999999999999999999999999999999999999999999999999


Q ss_pred             hhh
Q psy4421         163 MKS  165 (167)
Q Consensus       163 ~~~  165 (167)
                      ..+
T Consensus       263 ~ES  265 (279)
T KOG2462|consen  263 SES  265 (279)
T ss_pred             hhh
Confidence            864

>KOG2462|consensus

Probab=99.89  E-value=7.5e-24  Score=146.88  Aligned_cols=109  Identities=25%  Similarity=0.503  Sum_probs=99.5

Q ss_pred             ccceecCccCccccChHHHHHHHHHhhC---CCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCccc
Q psy4421          41 KYKYGCYRCSYFTYESNNLKKHILKHTG---EKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFV  117 (167)
Q Consensus        41 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~---~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~  117 (167)
                      ...|.|+.||+.+.+.++|.+|+++|-.   .+.+.        |..|++. +.....|..|+.+       +.  -+++
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~--------C~~C~K~-YvSmpALkMHirT-------H~--l~c~  189 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFS--------CKYCGKV-YVSMPALKMHIRT-------HT--LPCE  189 (279)
T ss_pred             CCceeccccccccccccccchhhccccccccccccc--------CCCCCce-eeehHHHhhHhhc-------cC--CCcc
Confidence            3459999999999999999999999853   44566        9999999 8899999999988       66  5789


Q ss_pred             CCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         118 CYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       118 C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      |.+||+.|...+-|+.|+|+|+|||||.|..|++.|..+++|+.|++||.
T Consensus       190 C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS  239 (279)
T KOG2462|consen  190 CGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHS  239 (279)
T ss_pred             cccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999973

>KOG1074|consensus

Probab=99.77  E-value=6e-20  Score=143.25  Aligned_cols=56  Identities=18%  Similarity=0.347  Sum_probs=51.2

Q ss_pred             cccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCC
Q psy4421           7 INQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus         7 ~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      +.+|..|.+.|...+.|+        .|.+.|++++||+|++||..|..+.+|+.|...|...-
T Consensus       353 khkCr~CakvfgS~SaLq--------iHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~~  408 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQ--------IHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREKY  408 (958)
T ss_pred             cchhhhhHhhcCchhhhh--------hhhhccCCCCCeeecccccccccccceeeeeeeccccC
Confidence            467999999999999999        99999999999999999999999999999987776543

>KOG1074|consensus

Probab=99.75  E-value=4.9e-19  Score=138.23  Aligned_cols=52  Identities=29%  Similarity=0.571  Sum_probs=50.3

Q ss_pred             ccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ..|.+|++.|...+.|..|+++|+|+|||.|..|++.|..+.+|..|+.+|+
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~  931 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHM  931 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhcccc
Confidence            6899999999999999999999999999999999999999999999999875

>KOG3608|consensus

Probab=99.71  E-value=8.3e-18  Score=120.46  Aligned_cols=134  Identities=23%  Similarity=0.473  Sum_probs=102.2

Q ss_pred             cccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHH-hhCCCCCCcccccCcccccc
Q psy4421           7 INQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILK-HTGEKPFSYMYENQQYCIHC   85 (167)
Q Consensus         7 ~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~-h~~~~~~~~~~~~~~~c~~c   85 (167)
                      +|.|..|.+.|..+..|.        .|+..|-  ..|+|+.|+.+....+.|..|++. |...+|++        |..|
T Consensus       237 ~fqC~~C~KrFaTeklL~--------~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfK--------Cd~C  298 (467)
T KOG3608|consen  237 SFQCAQCFKRFATEKLLK--------SHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFK--------CDEC  298 (467)
T ss_pred             chHHHHHHHHHhHHHHHH--------HHHHHhh--hcccccccccCCCChHHHHHHHHhhhccCCCcc--------ccch
Confidence            455555555555555555        5555442  247888888888888888888875 77788888        8889


Q ss_pred             cccccCChHHHHHHHhhcCCCCCCCCCCCcccCCC--CCccccCchhHHHHHhh-hCCCC--ceeCCCCcccccCchhHH
Q psy4421          86 NSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYA--CEYNTYMSGNIKTHLRL-HLDDK--PYKCSLCNYECRQNVHLK  160 (167)
Q Consensus        86 ~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~-h~~~~--~~~C~~C~~~f~~~~~l~  160 (167)
                      +.. +.+..+|.+|..+       +. +..|.|..  |...+.....++.|++. |.|..  +|.|-.|++.|.+..+|.
T Consensus       299 d~~-c~~esdL~kH~~~-------HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~  369 (467)
T KOG3608|consen  299 DTR-CVRESDLAKHVQV-------HS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLS  369 (467)
T ss_pred             hhh-hccHHHHHHHHHh-------cc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHH
Confidence            888 8888899999887       66 67788877  88888888999999664 44544  499999999999999999


Q ss_pred             HHhhhcC
Q psy4421         161 SHMKSNH  167 (167)
Q Consensus       161 ~H~~~hh  167 (167)
                      +|++..|
T Consensus       370 ~HL~kkH  376 (467)
T KOG3608|consen  370 AHLMKKH  376 (467)
T ss_pred             HHHHHhh
Confidence            9987654

>KOG3608|consensus

Probab=99.70  E-value=1e-17  Score=119.96  Aligned_cols=106  Identities=21%  Similarity=0.499  Sum_probs=58.4

Q ss_pred             ceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCC
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACE  122 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~  122 (167)
                      +|.|..|.+.|..+..|..|+..|..  .|+        |+.|+.. ....+.|..|+...      +..++||+|+.|.
T Consensus       237 ~fqC~~C~KrFaTeklL~~Hv~rHvn--~yk--------CplCdmt-c~~~ssL~~H~r~r------Hs~dkpfKCd~Cd  299 (467)
T KOG3608|consen  237 SFQCAQCFKRFATEKLLKSHVVRHVN--CYK--------CPLCDMT-CSSASSLTTHIRYR------HSKDKPFKCDECD  299 (467)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHhhh--ccc--------ccccccC-CCChHHHHHHHHhh------hccCCCccccchh
Confidence            44444444444444444444444432  334        6666655 55556666665552      3445566666666


Q ss_pred             ccccCchhHHHHHhhhCCCCceeCCC--CcccccCchhHHHHhhhc
Q psy4421         123 YNTYMSGNIKTHLRLHLDDKPYKCSL--CNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       123 ~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  166 (167)
                      +.+...+.|..|..+|. +-.|.|..  |-++|++..+|.+|.+.+
T Consensus       300 ~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~ev  344 (467)
T KOG3608|consen  300 TRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEV  344 (467)
T ss_pred             hhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHh
Confidence            66666666666666555 44466655  666666666666665544

>KOG3576|consensus

Probab=99.69  E-value=1.2e-17  Score=111.32  Aligned_cols=110  Identities=23%  Similarity=0.368  Sum_probs=91.9

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYAC  121 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C  121 (167)
                      ..|.|..|++.|.....|.+|++-|...+.+-        |..||+. |.+.-+|.+|.++       ++|-+||+|..|
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~l--------ct~cgkg-fndtfdlkrh~rt-------htgvrpykc~~c  179 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHL--------CTFCGKG-FNDTFDLKRHTRT-------HTGVRPYKCSLC  179 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhhhccHHHHHH--------HhhccCc-ccchhhhhhhhcc-------ccCccccchhhh
Confidence            34889999999988888888988888888887        8889888 8888888888888       888889999999


Q ss_pred             CccccCchhHHHHHhhhCC-----------CCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         122 EYNTYMSGNIKTHLRLHLD-----------DKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       122 ~~~~~~~~~l~~H~~~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++.|.++.+|..|.+.-+|           ++.|+|+.||.+-.....+..|++.+|
T Consensus       180 ~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h  236 (267)
T KOG3576|consen  180 EKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH  236 (267)
T ss_pred             hHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence            9999999888888663332           566899999988888888888887765

>KOG3576|consensus

Probab=99.63  E-value=9.2e-17  Score=107.14  Aligned_cols=122  Identities=20%  Similarity=0.297  Sum_probs=104.9

Q ss_pred             cCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccc
Q psy4421           4 SLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCI   83 (167)
Q Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~   83 (167)
                      +...|.|.+|++.|.....|.        +|++.|+..+.+.|.-||+.|.....|++|.++|+|.+||+        |.
T Consensus       114 d~d~ftCrvCgK~F~lQRmln--------rh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpyk--------c~  177 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLN--------RHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYK--------CS  177 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHH--------HHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccc--------hh
Confidence            355699999999999999999        99999999999999999999999999999999999999999        99


Q ss_pred             cccccccCChHHHHHHHhhcCCCCCC----CCCCCcccCCCCCccccCchhHHHHHhhhCCCC
Q psy4421          84 HCNSYISSDIKDLIEHCKSCSHMTRP----DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus        84 ~c~~~~~~~~~~l~~h~~~~~~~~~~----~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      .|++. |...-.|..|+..-+.....    ...++.|.|+.||.+-.....+..|+..++-..
T Consensus       178 ~c~ka-ftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  178 LCEKA-FTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             hhhHH-HHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence            99999 99888899998763322211    123578999999999999988999988776433

>KOG3623|consensus

Probab=99.63  E-value=1.5e-16  Score=123.16  Aligned_cols=113  Identities=27%  Similarity=0.439  Sum_probs=91.3

Q ss_pred             eecCccCccccChHHHHHHHHHhh--CCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCC------CCCCCc
Q psy4421          44 YGCYRCSYFTYESNNLKKHILKHT--GEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRP------DAFHFK  115 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~h~--~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~------~~~~~~  115 (167)
                      ..|++|++.+.....|..|+.-.+  .+..|.        |..|... |.....|.+|+.........      ....+.
T Consensus       211 ltcpycdrgykrltslkeHikyrhekne~nfs--------C~lCsyt-FAyRtQLErhm~~hkpg~dqa~sltqsa~lRK  281 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFS--------CMLCSYT-FAYRTQLERHMQLHKPGGDQAISLTQSALLRK  281 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCc--------chhhhhh-hhhHHHHHHHHHhhcCCCcccccccchhhhcc
Confidence            568888888888888888885432  334466        8888888 88888888888775433322      233567


Q ss_pred             ccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhh
Q psy4421         116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      |+|..|++.|..+..|+.|+|+|.|||||.|..|+|+|+...++..|+.+
T Consensus       282 FKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  282 FKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             ccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            99999999999999999999999999999999999999999999999854

>KOG3623|consensus

Probab=99.43  E-value=2.9e-14  Score=110.68  Aligned_cols=84  Identities=23%  Similarity=0.390  Sum_probs=78.3

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcc
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQY   81 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~   81 (167)
                      .+.+.+|.|..|++.|...+.|.        +|.-.|+|.+||+|.+|.+.|+.+-.|..|+|.|.|||||+        
T Consensus       889 kte~gmyaCDqCDK~FqKqSSLa--------RHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQ--------  952 (1007)
T KOG3623|consen  889 KTEDGMYACDQCDKAFQKQSSLA--------RHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQ--------  952 (1007)
T ss_pred             cCccccchHHHHHHHHHhhHHHH--------HhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcch--------
Confidence            35677899999999999999999        99889999999999999999999999999999999999999        


Q ss_pred             cccccccccCChHHHHHHHhh
Q psy4421          82 CIHCNSYISSDIKDLIEHCKS  102 (167)
Q Consensus        82 c~~c~~~~~~~~~~l~~h~~~  102 (167)
                      |..|++. |+..-.+.+||.-
T Consensus       953 CdKClKR-FSHSGSYSQHMNH  972 (1007)
T KOG3623|consen  953 CDKCLKR-FSHSGSYSQHMNH  972 (1007)
T ss_pred             hhhhhhh-cccccchHhhhcc
Confidence            9999999 9988888888754

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.27  E-value=1.4e-11  Score=95.48  Aligned_cols=104  Identities=16%  Similarity=0.339  Sum_probs=85.5

Q ss_pred             ccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCC
Q psy4421          41 KYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYA  120 (167)
Q Consensus        41 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~  120 (167)
                      ++.+.|+.|++.|. ...|..|+.+++  +++.        |+ |+.. + ....|..|+..       +...+++.|+.
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~--------Cp-Cg~~-~-~R~~L~~H~~t-------hCp~Kpi~C~f  509 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQ--------CP-CGVV-L-EKEQMVQHQAS-------TCPLRLITCRF  509 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC--CCcc--------CC-CCCC-c-chhHHHhhhhc-------cCCCCceeCCC
Confidence            34578999999995 678999999874  6888        99 9965 4 66899999988       88999999999


Q ss_pred             CCccccC----------chhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         121 CEYNTYM----------SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       121 C~~~~~~----------~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      |+..+..          ...|..|.... |.+++.|..||+.|..+ +|..|+...|
T Consensus       510 C~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h  564 (567)
T PLN03086        510 CGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVH  564 (567)
T ss_pred             CCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhh
Confidence            9999852          34789998875 89999999999988876 6667776543

>PHA00733 hypothetical protein

Probab=99.22  E-value=9.9e-12  Score=79.50  Aligned_cols=98  Identities=18%  Similarity=0.220  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHh
Q psy4421          57 NNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLR  136 (167)
Q Consensus        57 ~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~  136 (167)
                      ..|.++-..-...+++.        |.+|... +.+...|..+......+  ...+.++|.|+.|++.|.....|..|++
T Consensus        26 ~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~l~~~~~l~~~~--~~~~~kPy~C~~Cgk~Fss~s~L~~H~r   94 (128)
T PHA00733         26 EELKRYHSLTPEQKRLI--------RAVVKTL-IYNPQLLDESSYLYKLL--TSKAVSPYVCPLCLMPFSSSVSLKQHIR   94 (128)
T ss_pred             HHhhhhhcCChhhhhHH--------HHHHhhh-ccChhhhcchHHHHhhc--ccCCCCCccCCCCCCcCCCHHHHHHHHh
Confidence            34444333333345566        7777666 55544444331111111  1334678999999999999999999998


Q ss_pred             hhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         137 LHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      .+  +.+|.|..|++.|.....|..|+...|
T Consensus        95 ~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         95 YT--EHSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             cC--CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence            76  457999999999999999999998765

>PHA02768 hypothetical protein; Provisional

Probab=99.12  E-value=3.1e-11  Score=64.49  Aligned_cols=44  Identities=23%  Similarity=0.242  Sum_probs=40.9

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHH
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLK  160 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  160 (167)
                      .|.|+.||+.|...++|..|+++|.  ++|+|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            4899999999999999999999998  7999999999999888774

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.98  E-value=5e-10  Score=51.39  Aligned_cols=26  Identities=38%  Similarity=0.925  Sum_probs=23.9

Q ss_pred             hHHHHHhhhCCCCceeCCCCcccccC
Q psy4421         130 NIKTHLRLHLDDKPYKCSLCNYECRQ  155 (167)
Q Consensus       130 ~l~~H~~~h~~~~~~~C~~C~~~f~~  155 (167)
                      +|..|+++|.|++||.|+.|+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            58899999999999999999999974

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.96  E-value=1.8e-09  Score=83.92  Aligned_cols=102  Identities=15%  Similarity=0.273  Sum_probs=82.9

Q ss_pred             cCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccc
Q psy4421           4 SLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCI   83 (167)
Q Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~   83 (167)
                      .++.+.|+.|+..|. ..+|.        .|+..++  +++.|+ |++.+ ....|..|+.+|-+++++.        |.
T Consensus       450 l~~H~~C~~Cgk~f~-~s~Le--------kH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~--------C~  508 (567)
T PLN03086        450 AKNHVHCEKCGQAFQ-QGEME--------KHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLIT--------CR  508 (567)
T ss_pred             cccCccCCCCCCccc-hHHHH--------HHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCcee--------CC
Confidence            456789999999996 57788        7877664  679999 99765 6689999999999999999        99


Q ss_pred             cccccccC----------ChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHh
Q psy4421          84 HCNSYISS----------DIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLR  136 (167)
Q Consensus        84 ~c~~~~~~----------~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~  136 (167)
                      .|+.. +.          ....|..|..+       . +.+++.|..|++.+..+. +..|+.
T Consensus       509 fC~~~-v~~g~~~~d~~d~~s~Lt~HE~~-------C-G~rt~~C~~Cgk~Vrlrd-m~~H~~  561 (567)
T PLN03086        509 FCGDM-VQAGGSAMDVRDRLRGMSEHESI-------C-GSRTAPCDSCGRSVMLKE-MDIHQI  561 (567)
T ss_pred             CCCCc-cccCccccchhhhhhhHHHHHHh-------c-CCcceEccccCCeeeehh-HHHHHH
Confidence            99988 42          24578888876       4 778999999999988874 677754

>PHA00733 hypothetical protein

Probab=98.94  E-value=2.1e-09  Score=68.78  Aligned_cols=87  Identities=14%  Similarity=0.107  Sum_probs=60.2

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcc
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQY   81 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~   81 (167)
                      +...+++.|..|...|.....|..  .+.+..++.. .+.++|.|+.|++.|.....|..|++.+  +.++.        
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~l~~~~~~-~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~--------  101 (128)
T PHA00733         35 TPEQKRLIRAVVKTLIYNPQLLDE--SSYLYKLLTS-KAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKV--------  101 (128)
T ss_pred             ChhhhhHHHHHHhhhccChhhhcc--hHHHHhhccc-CCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCcc--------
Confidence            345677888888888777665551  1112233333 3467788888888888888888888765  34677        


Q ss_pred             cccccccccCChHHHHHHHhh
Q psy4421          82 CIHCNSYISSDIKDLIEHCKS  102 (167)
Q Consensus        82 c~~c~~~~~~~~~~l~~h~~~  102 (167)
                      |..|++. |.....|..|+..
T Consensus       102 C~~CgK~-F~~~~sL~~H~~~  121 (128)
T PHA00733        102 CPVCGKE-FRNTDSTLDHVCK  121 (128)
T ss_pred             CCCCCCc-cCCHHHHHHHHHH
Confidence            8888888 7877788877665

>KOG3993|consensus

Probab=98.90  E-value=5e-10  Score=82.67  Aligned_cols=157  Identities=15%  Similarity=0.155  Sum_probs=105.8

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCC--------CCC
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEK--------PFS   73 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~--------~~~   73 (167)
                      .+...-|.|..|...|.+.+.|.        +|.-.-+-...|+|++|++.|....||..|.|+|....        |-+
T Consensus       262 ~n~iGdyiCqLCK~kYeD~F~LA--------QHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k  333 (500)
T KOG3993|consen  262 PNVIGDYICQLCKEKYEDAFALA--------QHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPK  333 (500)
T ss_pred             cccHHHHHHHHHHHhhhhHHHHh--------hccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChh
Confidence            44555689999999999999999        77654444455999999999999999999999986322        111


Q ss_pred             -c----------------ccccCcccccccccccCChHHHHHHHhhcCCCCCCCC-------------------------
Q psy4421          74 -Y----------------MYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDA-------------------------  111 (167)
Q Consensus        74 -~----------------~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~-------------------------  111 (167)
                       -                +.+.-..|..|++. |.....|.+|+.++........                         
T Consensus       334 ~~~~~rae~~ea~rsg~dss~gi~~C~~C~Kk-FrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~  412 (500)
T KOG3993|consen  334 QAVETRAEVQEAERSGDDSSSGIFSCHTCGKK-FRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSS  412 (500)
T ss_pred             hhhhhhhhhhhccccCCcccCceeecHHhhhh-hHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccc
Confidence             0                11223357788888 7777788888666542221110                         


Q ss_pred             ------CCC--------cccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         112 ------FHF--------KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       112 ------~~~--------~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                            .+.        ...++.++..+..++.--.+.+.-..+..|.|.+|--.|.+...|.+|+...|
T Consensus       413 a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~H  482 (500)
T KOG3993|consen  413 ASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCH  482 (500)
T ss_pred             cccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcC
Confidence                  000        12445555555555443344443444667889999999999999999987765

>PHA02768 hypothetical protein; Provisional

Probab=98.71  E-value=3.1e-09  Score=56.83  Aligned_cols=42  Identities=19%  Similarity=0.412  Sum_probs=24.8

Q ss_pred             eecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHH
Q psy4421          44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDL   96 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l   96 (167)
                      |.|+.||+.|...+.|..|+++|+  ++++        |..|++. |...+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~k--------c~~C~k~-f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLK--------LSNCKRI-SLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--Cccc--------CCcccce-eccccee
Confidence            556666666666666666666666  3555        6666665 4444433

>PHA00732 hypothetical protein

Probab=98.51  E-value=9.5e-08  Score=55.80  Aligned_cols=45  Identities=36%  Similarity=0.612  Sum_probs=32.8

Q ss_pred             cccCCCCCccccCchhHHHHHhh-hCCCCceeCCCCcccccCchhHHHHhhh
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRL-HLDDKPYKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      ||.|..|++.|....+|..|++. |.   ++.|+.||+.|.   .|..|.++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            46788888888888888888774 54   347888888887   46666654

>PHA00616 hypothetical protein

Probab=98.47  E-value=5.4e-08  Score=49.62  Aligned_cols=34  Identities=12%  Similarity=0.145  Sum_probs=31.6

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      ||+|+.||+.|....+|..|++.|+|++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            6899999999999999999999999999998875

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.37  E-value=5.8e-07  Score=48.77  Aligned_cols=50  Identities=24%  Similarity=0.531  Sum_probs=37.8

Q ss_pred             cccCCCCCccccCchhHHHHHh-hhCCC-CceeCCCCcccccCchhHHHHhhhcC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLR-LHLDD-KPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      .|.||.|++ ..+...|..|.. .|.++ +.+.|++|...+.  .+|..|+..+|
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            478999999 566678999955 45544 4689999998655  48999998776

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=98.29  E-value=4e-07  Score=46.43  Aligned_cols=31  Identities=19%  Similarity=0.488  Sum_probs=25.1

Q ss_pred             ceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      ||+|..||+.|...+.|.+|++.|++++++.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~   31 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLT   31 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccc
Confidence            4778888888888888888888888888776

>KOG3993|consensus

Probab=98.26  E-value=2e-07  Score=69.25  Aligned_cols=78  Identities=22%  Similarity=0.457  Sum_probs=57.7

Q ss_pred             cccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhC--------C-------------
Q psy4421          82 CIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHL--------D-------------  140 (167)
Q Consensus        82 c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~--------~-------------  140 (167)
                      |..|... +.+.=.|.+|.-.       .....-|+|+.|++.|.-..+|-.|+|=|-        |             
T Consensus       270 CqLCK~k-YeD~F~LAQHrC~-------RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae  341 (500)
T KOG3993|consen  270 CQLCKEK-YEDAFALAQHRCP-------RIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAE  341 (500)
T ss_pred             HHHHHHh-hhhHHHHhhccCC-------eeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhh
Confidence            6677666 5555566666544       444456888888888888888888877442        1             


Q ss_pred             ------------CCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         141 ------------DKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       141 ------------~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                                  +.-|.|.+|++.|+...+|+.|+-+||
T Consensus       342 ~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  342 VQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             hhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhh
Confidence                        224899999999999999999998875

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.23  E-value=6.2e-07  Score=39.71  Aligned_cols=22  Identities=36%  Similarity=0.844  Sum_probs=18.2

Q ss_pred             eeCCCCcccccCchhHHHHhhh
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      |.|+.|++.|...++|..|+++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6788888888888888888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.19  E-value=8.8e-07  Score=40.46  Aligned_cols=15  Identities=53%  Similarity=1.121  Sum_probs=7.8

Q ss_pred             HHHHHHHhhCCCCCC
Q psy4421          59 LKKHILKHTGEKPFS   73 (167)
Q Consensus        59 l~~H~~~h~~~~~~~   73 (167)
                      |.+|+++|++++||+
T Consensus         2 l~~H~~~H~~~k~~~   16 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYK   16 (26)
T ss_dssp             HHHHHHHHSSSSSEE
T ss_pred             HHHHhhhcCCCCCCC
Confidence            445555555555555

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.18  E-value=1.2e-06  Score=39.08  Aligned_cols=24  Identities=29%  Similarity=0.891  Sum_probs=18.4

Q ss_pred             eeCCCCcccccCchhHHHHhhhcC
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      |.|+.|++.|.+..+|..|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            678888888888888888888776

...

>PHA00732 hypothetical protein

Probab=98.12  E-value=1.7e-06  Score=50.58  Aligned_cols=47  Identities=17%  Similarity=0.314  Sum_probs=35.1

Q ss_pred             cccccccccccCchHHHHHHhhhhhccccCC-CCCccceecCccCccccChHHHHHHHHHhh
Q psy4421           7 INQCVHCHLTLTKSTEVIVKHAQTCISMVRP-DSFKYKYGCYRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus         7 ~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~-~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      ||.|..|++.|....+|.        .|++. |.+   +.|+.|++.|.   .+..|..+..
T Consensus         1 py~C~~Cgk~F~s~s~Lk--------~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALK--------QHARRNHTL---TKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHH--------HHhhcccCC---CccCCCCCEeC---ChhhhhcccC
Confidence            688999999999888888        78763 543   57999999887   4666765443

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.07  E-value=2.8e-06  Score=39.14  Aligned_cols=25  Identities=24%  Similarity=0.580  Sum_probs=20.5

Q ss_pred             ceeCCCCcccccCchhHHHHhhhcC
Q psy4421         143 PYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ||.|..|++.|.+..+|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5788888888888888888887764

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.02  E-value=5.6e-06  Score=36.55  Aligned_cols=23  Identities=35%  Similarity=0.660  Sum_probs=18.4

Q ss_pred             eecCccCccccChHHHHHHHHHh
Q psy4421          44 YGCYRCSYFTYESNNLKKHILKH   66 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~h   66 (167)
                      |.|++|++.|..+..|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            57888888888888888888764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.81  E-value=1.5e-05  Score=48.73  Aligned_cols=72  Identities=25%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             cccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHH
Q psy4421          82 CIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKS  161 (167)
Q Consensus        82 c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  161 (167)
                      |..|+.. +.+...+..|+...+.....           ....+.....+....+... ...+.|..|++.|.+...|..
T Consensus         2 C~~C~~~-f~~~~~l~~H~~~~H~~~~~-----------~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~   68 (100)
T PF12756_consen    2 CLFCDES-FSSVDDLLQHMKKKHGFDIP-----------DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQE   68 (100)
T ss_dssp             ------------------------------------------------------------SSEEBSSSS-EESSHHHHHH
T ss_pred             ccccccc-cccccccccccccccccccc-----------ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHH
Confidence            7889999 88899999998763322211           0111112233333333221 236889999999999999999


Q ss_pred             Hhhhc
Q psy4421         162 HMKSN  166 (167)
Q Consensus       162 H~~~h  166 (167)
                      |++.+
T Consensus        69 Hm~~~   73 (100)
T PF12756_consen   69 HMRSK   73 (100)
T ss_dssp             HHHHT
T ss_pred             HHcCc
Confidence            98754

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.69  E-value=3.8e-05  Score=41.58  Aligned_cols=47  Identities=17%  Similarity=0.255  Sum_probs=23.8

Q ss_pred             ccccccccccCchHHHHHHhhhhhccccC-CCCC-ccceecCccCccccChHHHHHHHHH
Q psy4421           8 NQCVHCHLTLTKSTEVIVKHAQTCISMVR-PDSF-KYKYGCYRCSYFTYESNNLKKHILK   65 (167)
Q Consensus         8 ~~C~~C~~~f~~~~~l~~~~~~~~~~h~~-~~~~-~~~~~C~~C~~~~~~~~~l~~H~~~   65 (167)
                      |.|+.|++. .+..+|.        .|.. .|.. .+.+.|++|...+.  .+|.+|+..
T Consensus         3 f~CP~C~~~-~~~~~L~--------~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~   51 (54)
T PF05605_consen    3 FTCPYCGKG-FSESSLV--------EHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS   51 (54)
T ss_pred             cCCCCCCCc-cCHHHHH--------HHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence            566666663 3345566        4443 2322 23456666665432  356666554

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.60  E-value=8.2e-05  Score=32.80  Aligned_cols=23  Identities=22%  Similarity=0.519  Sum_probs=16.6

Q ss_pred             eecCccCccccChHHHHHHHHHh
Q psy4421          44 YGCYRCSYFTYESNNLKKHILKH   66 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~h   66 (167)
                      |.|+.|++.|.+...|.+|++++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            56888888888888888888764

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.50  E-value=4.9e-05  Score=34.86  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=22.6

Q ss_pred             cccCCCCCccccCchhHHHHHhhhC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHL  139 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~  139 (167)
                      ||.|..|+..|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5889999999999999999998775

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.47  E-value=5.6e-05  Score=54.66  Aligned_cols=52  Identities=27%  Similarity=0.508  Sum_probs=44.0

Q ss_pred             CCcccCCC--CCccccCchhHHHHHhhhC-------------------CCCceeCCCCcccccCchhHHHHhh
Q psy4421         113 HFKFVCYA--CEYNTYMSGNIKTHLRLHL-------------------DDKPYKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       113 ~~~~~C~~--C~~~~~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      ++||+|++  |.+.+.....|+.|+..-+                   .+|||.|+.|+|++....-|.-|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            48999986  8999999999999977322                   2589999999999999988887764

>smart00355 ZnF_C2H2 zinc finger

Probab=97.41  E-value=8.4e-05  Score=33.33  Aligned_cols=23  Identities=30%  Similarity=0.749  Sum_probs=16.7

Q ss_pred             eeCCCCcccccCchhHHHHhhhc
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |.|..|++.|...++|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46777777777777777777644

>PRK04860 hypothetical protein; Provisional

Probab=97.38  E-value=0.00013  Score=48.57  Aligned_cols=40  Identities=20%  Similarity=0.468  Sum_probs=35.1

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCch
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNV  157 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  157 (167)
                      -+|.|. |+.   ....++.|.+++.|+++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            479998 987   6778899999999999999999999987654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.27  E-value=0.00018  Score=43.81  Aligned_cols=72  Identities=21%  Similarity=0.370  Sum_probs=20.6

Q ss_pred             ecCccCccccChHHHHHHHHHhhC-CCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCc
Q psy4421          45 GCYRCSYFTYESNNLKKHILKHTG-EKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEY  123 (167)
Q Consensus        45 ~C~~C~~~~~~~~~l~~H~~~h~~-~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~  123 (167)
                      +|..|+..|.....|..|+...++ ..+-.             .. ......+.....        ......+.|..|+.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~-------------~~-l~~~~~~~~~~~--------~~~~~~~~C~~C~~   58 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQ-------------KY-LVDPNRLLNYLR--------KKVKESFRCPYCNK   58 (100)
T ss_dssp             ----------------------------------------------------------------------SSEEBSSSS-
T ss_pred             Cccccccccccccccccccccccccccccc-------------cc-cccccccccccc--------cccCCCCCCCccCC
Confidence            478888888888888888854332 21100             00 111122222211        12223688999999


Q ss_pred             cccCchhHHHHHhhh
Q psy4421         124 NTYMSGNIKTHLRLH  138 (167)
Q Consensus       124 ~~~~~~~l~~H~~~h  138 (167)
                      .|.+...|..|++.+
T Consensus        59 ~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   59 TFRSREALQEHMRSK   73 (100)
T ss_dssp             EESSHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHcCc
Confidence            999999999998864

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.23  E-value=0.00041  Score=36.29  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCc
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKP  143 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~  143 (167)
                      ...+.|..|++|+..+.+.-+|++|+.+.++.+|
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            4455677888888888888888888877776654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.15  E-value=0.00028  Score=31.58  Aligned_cols=22  Identities=27%  Similarity=0.750  Sum_probs=16.8

Q ss_pred             eeCCCCcccccCchhHHHHhhh
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      |.|..|++.|.+..+|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            5677788888888888887765

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.06  E-value=0.00095  Score=34.96  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=23.5

Q ss_pred             CCccceecCccCccccChHHHHHHHHHhhCCCC
Q psy4421          39 SFKYKYGCYRCSYFTYESNNLKKHILKHTGEKP   71 (167)
Q Consensus        39 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~   71 (167)
                      ..+.|-.|++|+..+....+|.+|++++++.+|
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            345678999999999999999999988887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.05  E-value=0.00036  Score=50.63  Aligned_cols=70  Identities=21%  Similarity=0.263  Sum_probs=45.2

Q ss_pred             ccceecCc--cCccccChHHHHHHHHH-hhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCccc
Q psy4421          41 KYKYGCYR--CSYFTYESNNLKKHILK-HTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFV  117 (167)
Q Consensus        41 ~~~~~C~~--C~~~~~~~~~l~~H~~~-h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~  117 (167)
                      ++||+|+.  |++.+++...|+-|+.. |...+..+        -+.-.           .+...       -...+||+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~--------~p~p~-----------~~~~F-------~~~~KPYr  400 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHE--------NPSPE-----------KMNIF-------SAKDKPYR  400 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCC--------CCCcc-----------ccccc-------cccCCcee
Confidence            37788875  88888888888877753 43333222        11000           00000       34468999


Q ss_pred             CCCCCccccCchhHHHHHh
Q psy4421         118 CYACEYNTYMSGNIKTHLR  136 (167)
Q Consensus       118 C~~C~~~~~~~~~l~~H~~  136 (167)
                      |++|++.+.....|+.|+.
T Consensus       401 CevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         401 CEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ccccchhhccCccceeccc
Confidence            9999999999999999865

>smart00355 ZnF_C2H2 zinc finger

Probab=96.99  E-value=0.00084  Score=29.87  Aligned_cols=24  Identities=29%  Similarity=0.546  Sum_probs=16.6

Q ss_pred             eecCccCccccChHHHHHHHHHhh
Q psy4421          44 YGCYRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            357777777777777777776543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.95  E-value=0.0013  Score=29.12  Aligned_cols=23  Identities=48%  Similarity=0.938  Sum_probs=17.5

Q ss_pred             eecCccCccccChHHHHHHHHHhh
Q psy4421          44 YGCYRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      |.|+.|++... +..|.+|++.+.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            67999999887 889999988754

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.91  E-value=0.00045  Score=30.63  Aligned_cols=23  Identities=43%  Similarity=0.980  Sum_probs=14.3

Q ss_pred             eeCCCCcccccCchhHHHHhhhcC
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      |.|+.|++... ...|..|++++|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            56777777666 667777776654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.62  E-value=0.00089  Score=30.60  Aligned_cols=22  Identities=36%  Similarity=0.680  Sum_probs=18.6

Q ss_pred             eeCCCCcccccCchhHHHHhhh
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788899999988888888865

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.47  E-value=0.0021  Score=28.65  Aligned_cols=22  Identities=23%  Similarity=0.467  Sum_probs=14.7

Q ss_pred             eecCccCccccChHHHHHHHHH
Q psy4421          44 YGCYRCSYFTYESNNLKKHILK   65 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~   65 (167)
                      |.|..|++.|.++..|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4567777777777777776643

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.59  E-value=0.0096  Score=26.64  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=12.8

Q ss_pred             eeCCCCcccccCchhHHHHhhh
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      ..|+.||+.| ..+.|.+|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3566777777 44566666643

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.54  E-value=0.0031  Score=48.23  Aligned_cols=60  Identities=23%  Similarity=0.425  Sum_probs=54.4

Q ss_pred             CcccccccccccCchHHHHHHhhhhhccccC--CCCCc--cceecC--ccCccccChHHHHHHHHHhhCCCCCC
Q psy4421           6 NINQCVHCHLTLTKSTEVIVKHAQTCISMVR--PDSFK--YKYGCY--RCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus         6 ~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~--~~~~~--~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .++.|..|...|.....+.        .|..  .|.++  +++.|+  .|++.|.....+..|...|.+..+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~--------~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLT--------RHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAK  353 (467)
T ss_pred             cCCCCccccCCcccccccc--------ccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccc
Confidence            4788999999999999999        8988  79999  999999  89999999999999999998877665

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.52  E-value=0.016  Score=26.32  Aligned_cols=17  Identities=12%  Similarity=0.327  Sum_probs=12.7

Q ss_pred             ccccccccccCchHHHH
Q psy4421           8 NQCVHCHLTLTKSTEVI   24 (167)
Q Consensus         8 ~~C~~C~~~f~~~~~l~   24 (167)
                      |.|..|++.|.+...+.
T Consensus         2 ~~C~~C~k~f~~~~~~~   18 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLK   18 (27)
T ss_dssp             CBBTTTTBBBSSHHHHH
T ss_pred             CCcccCCCCcCCHHHHH
Confidence            56777777777777777

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.09  E-value=0.02  Score=27.60  Aligned_cols=23  Identities=26%  Similarity=0.743  Sum_probs=16.6

Q ss_pred             ceeCCCCcccccCchhHHHHhhh
Q psy4421         143 PYKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      +|.|..|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46777888877777777777653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK04860 hypothetical protein; Provisional

Probab=94.91  E-value=0.023  Score=37.94  Aligned_cols=35  Identities=23%  Similarity=0.618  Sum_probs=31.5

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCCCCCcccccCccccccccc
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSY   88 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~   88 (167)
                      .+|.|. |+.   ....+.+|.+++.++++|.        |..|+..
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~Yr--------C~~C~~~  152 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYR--------CRRCGET  152 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEE--------CCCCCce
Confidence            469998 998   6788999999999999999        9999987

>KOG2231|consensus

Probab=94.58  E-value=0.12  Score=42.06  Aligned_cols=48  Identities=23%  Similarity=0.437  Sum_probs=32.9

Q ss_pred             ccCCCCCccccCchhHHHHHhhhCCCCceeCCCC------cccccCchhHHHHhhhcC
Q psy4421         116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC------NYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C------~~~f~~~~~l~~H~~~hh  167 (167)
                      -.|..|...|.....|..|++.++    |.|..|      +.-|....+|..|.+.+|
T Consensus       183 p~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  183 PLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             ccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            467788888888888888877543    344444      344566778888877765

>KOG2893|consensus

Probab=93.77  E-value=0.027  Score=39.55  Aligned_cols=32  Identities=25%  Similarity=0.538  Sum_probs=18.0

Q ss_pred             cCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccc
Q psy4421          46 CYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYI   89 (167)
Q Consensus        46 C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~   89 (167)
                      |.+|++.|..+..|.+|++    .|.|+        |-+|.+.+
T Consensus        13 cwycnrefddekiliqhqk----akhfk--------chichkkl   44 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQK----AKHFK--------CHICHKKL   44 (341)
T ss_pred             eeecccccchhhhhhhhhh----hccce--------eeeehhhh
Confidence            5566666666555555554    45555        55555553

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=93.53  E-value=0.047  Score=26.14  Aligned_cols=24  Identities=29%  Similarity=0.790  Sum_probs=14.1

Q ss_pred             ccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcc
Q psy4421         116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY  151 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  151 (167)
                      |.|.+||..+....            .++.|+.||.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            56667766554332            4566777764

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=92.93  E-value=0.045  Score=29.23  Aligned_cols=24  Identities=17%  Similarity=0.447  Sum_probs=11.9

Q ss_pred             CCCceeCCCCcccccCchhHHHHh
Q psy4421         140 DDKPYKCSLCNYECRQNVHLKSHM  163 (167)
Q Consensus       140 ~~~~~~C~~C~~~f~~~~~l~~H~  163 (167)
                      ||--+.|+.||..|+..-++.+|.
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHV   37 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHV   37 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHh
Confidence            344445555555555554554444

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.92  E-value=0.11  Score=24.83  Aligned_cols=23  Identities=13%  Similarity=0.312  Sum_probs=18.4

Q ss_pred             ceecCccCccccChHHHHHHHHH
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILK   65 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~   65 (167)
                      +|.|.+|+..|.+...+..|...
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            47789999988888888888743

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PHA00626 hypothetical protein

Probab=92.27  E-value=0.069  Score=28.58  Aligned_cols=13  Identities=31%  Similarity=0.787  Sum_probs=7.8

Q ss_pred             CceeCCCCccccc
Q psy4421         142 KPYKCSLCNYECR  154 (167)
Q Consensus       142 ~~~~C~~C~~~f~  154 (167)
                      ..|+|+.||+.|+
T Consensus        22 nrYkCkdCGY~ft   34 (59)
T PHA00626         22 DDYVCCDCGYNDS   34 (59)
T ss_pred             cceEcCCCCCeec
Confidence            4566666666554

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.02  E-value=0.052  Score=41.47  Aligned_cols=53  Identities=28%  Similarity=0.505  Sum_probs=48.3

Q ss_pred             CcccCCCCCccccCchhHHHHHh--hhCCC--CceeCC--CCcccccCchhHHHHhhhc
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLR--LHLDD--KPYKCS--LCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h  166 (167)
                      .++.|..|...|.....|..|.+  .|.++  +++.|+  .|++.|.+...+..|..+|
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  346 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH  346 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccc
Confidence            36889999999999999999999  89999  999999  7999999999998887765

>KOG2231|consensus

Probab=91.80  E-value=0.65  Score=37.95  Aligned_cols=93  Identities=17%  Similarity=0.341  Sum_probs=55.2

Q ss_pred             cccChHHHHHHHHH-hhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCC------Ccc
Q psy4421          52 FTYESNNLKKHILK-HTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYAC------EYN  124 (167)
Q Consensus        52 ~~~~~~~l~~H~~~-h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C------~~~  124 (167)
                      ..+....|..|+.. -.++..+.    +-..|..|... |.....+.+|+..           .-|.|..|      +.-
T Consensus       158 k~Yt~~el~~h~~~gd~d~~s~r----Ghp~C~~C~~~-fld~~el~rH~~~-----------~h~~chfC~~~~~~ney  221 (669)
T KOG2231|consen  158 KLYTRAELNLHLMFGDPDDESCR----GHPLCKFCHER-FLDDDELYRHLRF-----------DHEFCHFCDYKTGQNEY  221 (669)
T ss_pred             ehehHHHHHHHHhcCCCcccccc----CCccchhhhhh-hccHHHHHHhhcc-----------ceeheeecCcccccchh
Confidence            34456677777754 22222221    12339999999 8888889998775           22445554      455


Q ss_pred             ccCchhHHHHHhhhCCCCceeCC--CCc-ccccCchhHHHHhh
Q psy4421         125 TYMSGNIKTHLRLHLDDKPYKCS--LCN-YECRQNVHLKSHMK  164 (167)
Q Consensus       125 ~~~~~~l~~H~~~h~~~~~~~C~--~C~-~~f~~~~~l~~H~~  164 (167)
                      |.....|..|-+.+    -|.|.  .|. +.|.....+..+++
T Consensus       222 y~~~~dLe~HfR~~----HflCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  222 YNDYDDLEEHFRKG----HFLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             cccchHHHHHhhhc----CccccccccccceeeehhHHHHHHH
Confidence            66677888887744    36777  454 34554445545544

>KOG2482|consensus

Probab=91.33  E-value=0.63  Score=34.73  Aligned_cols=55  Identities=20%  Similarity=0.348  Sum_probs=35.0

Q ss_pred             cccccccccCChHHHHHHHhhcCCCCCCCCCCCc---------------ccCCCCCccccCchhHHHHHh
Q psy4421          82 CIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFK---------------FVCYACEYNTYMSGNIKTHLR  136 (167)
Q Consensus        82 c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~---------------~~C~~C~~~~~~~~~l~~H~~  136 (167)
                      |..|......+.+.+..|+-..+.+..+.+..-+               +.|-.|.+.|..+..|+.||+
T Consensus       147 ClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMr  216 (423)
T KOG2482|consen  147 CLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMR  216 (423)
T ss_pred             EEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHH
Confidence            8888887677888888887765555544444322               455555555555555555555

>KOG1146|consensus

Probab=91.02  E-value=0.13  Score=44.55  Aligned_cols=55  Identities=31%  Similarity=0.689  Sum_probs=46.6

Q ss_pred             CCCCcccCCCCCccccCchhHHHHHhh-hC------------------------CCCceeCCCCcccccCchhHHHHhhh
Q psy4421         111 AFHFKFVCYACEYNTYMSGNIKTHLRL-HL------------------------DDKPYKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       111 ~~~~~~~C~~C~~~~~~~~~l~~H~~~-h~------------------------~~~~~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      ...+.++|+.|+..|.....|-.|+|. |.                        +-++|.|..|...+....+|.+|+.+
T Consensus       461 S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  461 SFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             cccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence            345789999999999999999999997 11                        24678999999999999999999864

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=91.01  E-value=0.24  Score=26.92  Aligned_cols=36  Identities=25%  Similarity=0.545  Sum_probs=23.6

Q ss_pred             CCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcc
Q psy4421         111 AFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY  151 (167)
Q Consensus       111 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  151 (167)
                      .....|.|+.||...-.+..-   -|.+  ..+|.|+.||.
T Consensus        23 e~~v~F~CPnCGe~~I~Rc~~---CRk~--g~~Y~Cp~CGF   58 (61)
T COG2888          23 ETAVKFPCPNCGEVEIYRCAK---CRKL--GNPYRCPKCGF   58 (61)
T ss_pred             CceeEeeCCCCCceeeehhhh---HHHc--CCceECCCcCc
Confidence            344579999999665554321   1222  46899999984

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.92  E-value=0.25  Score=25.22  Aligned_cols=27  Identities=33%  Similarity=0.603  Sum_probs=16.0

Q ss_pred             CCCceeCCCCcccccC----chhHHHHhhhc
Q psy4421         140 DDKPYKCSLCNYECRQ----NVHLKSHMKSN  166 (167)
Q Consensus       140 ~~~~~~C~~C~~~f~~----~~~l~~H~~~h  166 (167)
                      ++....|..|++.+..    .+.|.+|++..
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~   43 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKKK   43 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHHHT
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhhhh
Confidence            3455778888887765    36788888543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=90.20  E-value=0.71  Score=28.64  Aligned_cols=25  Identities=28%  Similarity=0.792  Sum_probs=22.3

Q ss_pred             ceeC----CCCcccccCchhHHHHhhhcC
Q psy4421         143 PYKC----SLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       143 ~~~C----~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      .|.|    ..|++.+.+...+..|++.+|
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~H  108 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEH  108 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence            4889    899999999999999998876

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.16  E-value=0.22  Score=30.99  Aligned_cols=14  Identities=29%  Similarity=0.648  Sum_probs=7.1

Q ss_pred             CceeCCCCcccccC
Q psy4421         142 KPYKCSLCNYECRQ  155 (167)
Q Consensus       142 ~~~~C~~C~~~f~~  155 (167)
                      .|..|+.||..|..
T Consensus        25 ~PivCP~CG~~~~~   38 (108)
T PF09538_consen   25 DPIVCPKCGTEFPP   38 (108)
T ss_pred             CCccCCCCCCccCc
Confidence            44555555555543

The function of members of this family is unknown.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=89.71  E-value=0.21  Score=33.48  Aligned_cols=23  Identities=35%  Similarity=0.987  Sum_probs=19.3

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCCCceeCCCCc
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCN  150 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~  150 (167)
                      .|.|++||.+             +.|+.|-+|+.||
T Consensus       134 ~~vC~vCGy~-------------~~ge~P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYT-------------HEGEAPEVCPICG  156 (166)
T ss_pred             EEEcCCCCCc-------------ccCCCCCcCCCCC
Confidence            7999999876             4567889999998

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=89.68  E-value=0.33  Score=23.81  Aligned_cols=33  Identities=18%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             cCCCCCccccCchhHHHHHhhhCCCCceeCCCCccccc
Q psy4421         117 VCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECR  154 (167)
Q Consensus       117 ~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  154 (167)
                      .|+.|+..|.....-     +..+.+...|+.|+..|.
T Consensus         4 ~CP~C~~~f~v~~~~-----l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    4 TCPNCQTRFRVPDDK-----LPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             ECCCCCceEEcCHHH-----cccCCcEEECCCCCcEee
Confidence            577777777766532     223345677888877664

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=89.18  E-value=0.25  Score=23.77  Aligned_cols=25  Identities=32%  Similarity=0.773  Sum_probs=15.3

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcc
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY  151 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  151 (167)
                      .|+|.+||..+...            +.|..|+.||.
T Consensus         2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE------------EAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC------------cCCCcCcCCCC
Confidence            36777777664432            24567777774

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=88.99  E-value=0.13  Score=34.16  Aligned_cols=12  Identities=17%  Similarity=0.468  Sum_probs=7.6

Q ss_pred             eeCCCCcccccC
Q psy4421         144 YKCSLCNYECRQ  155 (167)
Q Consensus       144 ~~C~~C~~~f~~  155 (167)
                      +.|+.||++|..
T Consensus        29 ~~c~~c~~~f~~   40 (154)
T PRK00464         29 RECLACGKRFTT   40 (154)
T ss_pred             eeccccCCcceE
Confidence            666666666654

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=88.92  E-value=0.4  Score=23.53  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=23.1

Q ss_pred             cccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCcccc
Q psy4421           7 INQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTY   54 (167)
Q Consensus         7 ~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~   54 (167)
                      .+.|+.|+..|....+..        .    . ......|+.|+..|.
T Consensus         2 ~~~CP~C~~~~~v~~~~~--------~----~-~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         2 RIQCPNCKTSFRVVDSQL--------G----A-NGGKVRCGKCGHVWY   36 (38)
T ss_pred             EEECCCCCCEEEeCHHHc--------C----C-CCCEEECCCCCCEEE
Confidence            367888998887766544        1    1 112477999988764

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=88.33  E-value=0.49  Score=23.07  Aligned_cols=33  Identities=15%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             ccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccc
Q psy4421         116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYEC  153 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f  153 (167)
                      ..|+.|+..|.-....     +-.+.....|+.|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~-----ip~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK-----IPPKGRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHH-----CCCCCcEEECCCCCCEe
Confidence            3577777777666542     22333456777777666

>KOG1146|consensus

Probab=87.91  E-value=0.088  Score=45.58  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=68.0

Q ss_pred             cccccccccCchHHHHHHhhhhhccccCC--C--CCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCccccc
Q psy4421           9 QCVHCHLTLTKSTEVIVKHAQTCISMVRP--D--SFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIH   84 (167)
Q Consensus         9 ~C~~C~~~f~~~~~l~~~~~~~~~~h~~~--~--~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~   84 (167)
                      .|..|...|.......        .+..-  +  .....+.|..|++.+.....+. ++   ....+|.        |..
T Consensus      1230 ~~~~~e~~f~~~~~~~--------~~a~~~~~~~~~sGe~~c~~~~~~~~~~~~~~-~l---~~~~~~~--------~~~ 1289 (1406)
T KOG1146|consen 1230 LPNALEQPFPQEPEPT--------ATAPPKPPELPASGEGECGAVDELLTPSFGIS-TL---DVTHRYL--------CRQ 1289 (1406)
T ss_pred             cHHhhhcCccCccccc--------ccCCCCCCcCcCCCcchhhhccccccCcccee-ec---ccchhHH--------HHH
Confidence            4556666666665555        33221  1  1122367888888877766554 33   2344566        888


Q ss_pred             ccccccCChHHHHHHHhhcCCCCCCCCCC----------CcccCCCCCccccCchhHHHHHhhhCCC
Q psy4421          85 CNSYISSDIKDLIEHCKSCSHMTRPDAFH----------FKFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus        85 c~~~~~~~~~~l~~h~~~~~~~~~~~~~~----------~~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      |... |.....+..|...+..+.+...+.          ..| |..|...|.....|..|+++-+++
T Consensus      1290 ~~~~-~~~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm~~~~~~ 1354 (1406)
T KOG1146|consen 1290 CKMA-FDGEAPLTAHQRKFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLSGREALQIHMRSSAHR 1354 (1406)
T ss_pred             HHhh-hcchhHHHHHHHHHHhccCccccCCCCcccCcccccc-chHHHhhcchhHHHHHHHHHhhhc
Confidence            8777 888888888876655444332221          124 888888888888888887754443

>TIGR00622 ssl1 transcription factor ssl1

Probab=86.68  E-value=2  Score=26.89  Aligned_cols=48  Identities=15%  Similarity=0.258  Sum_probs=32.1

Q ss_pred             cCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         117 VCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       117 ~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      .|-.|+..|........  ..-.....|.|+.|...|-..-++..|...|
T Consensus        57 ~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             cccCcCCCCCCcccccc--cccccccceeCCCCCCccccccchhhhhhcc
Confidence            48888888876532110  0012245799999999998888888887655

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.68  E-value=0.21  Score=35.11  Aligned_cols=43  Identities=19%  Similarity=0.393  Sum_probs=25.0

Q ss_pred             CcccCCCCCccccCchhHHHHHhh----------hCCCCc-----eeCCCCcccccCc
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRL----------HLDDKP-----YKCSLCNYECRQN  156 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~----------h~~~~~-----~~C~~C~~~f~~~  156 (167)
                      +.+.||+|+..|....-.....++          -.|..|     ..|+.||.+|...
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            456778888777765433322221          122344     3799999887653

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=85.99  E-value=0.37  Score=27.57  Aligned_cols=40  Identities=13%  Similarity=0.199  Sum_probs=22.9

Q ss_pred             ccCCCCCccccCchhHHHHHhhhCCCCceeCC--CCcccccCch
Q psy4421         116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS--LCNYECRQNV  157 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~  157 (167)
                      +.|+.|+.......+-.....  ..+..+.|.  .||.+|....
T Consensus         2 m~CP~Cg~~a~irtSr~~s~~--~~~~Y~qC~N~eCg~tF~t~e   43 (72)
T PRK09678          2 FHCPLCQHAAHARTSRYITDT--TKERYHQCQNVNCSATFITYE   43 (72)
T ss_pred             ccCCCCCCccEEEEChhcChh--hheeeeecCCCCCCCEEEEEE
Confidence            457777765544433222222  346667887  7888886543

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=85.99  E-value=0.58  Score=24.10  Aligned_cols=30  Identities=17%  Similarity=0.561  Sum_probs=17.6

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCCCceeCCCCccccc
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECR  154 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  154 (167)
                      .|.|+.||..+.....          .....|+.||..+.
T Consensus         3 ~y~C~~CG~~~~~~~~----------~~~~~Cp~CG~~~~   32 (46)
T PRK00398          3 EYKCARCGREVELDEY----------GTGVRCPYCGYRIL   32 (46)
T ss_pred             EEECCCCCCEEEECCC----------CCceECCCCCCeEE
Confidence            4677777766554321          11567777776543

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=85.83  E-value=0.37  Score=31.97  Aligned_cols=43  Identities=12%  Similarity=0.252  Sum_probs=24.4

Q ss_pred             ccccccccccCchHHHHHHhhhhhccccCC-CCCccceecCccCccccChHHH
Q psy4421           8 NQCVHCHLTLTKSTEVIVKHAQTCISMVRP-DSFKYKYGCYRCSYFTYESNNL   59 (167)
Q Consensus         8 ~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~-~~~~~~~~C~~C~~~~~~~~~l   59 (167)
                      +.|+.|+..+....+-+         -+.. ..-++.++|+.||++|.....+
T Consensus         1 m~cp~c~~~~~~~~~s~---------~~~~~~~~~~~~~c~~c~~~f~~~e~~   44 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSR---------PAEDGNAIRRRRECLACGKRFTTFERV   44 (154)
T ss_pred             CcCCCCCCCCCEeEecc---------ccCCCCceeeeeeccccCCcceEeEec
Confidence            47999998763221111         0111 1122348999999999866543

>smart00531 TFIIE Transcription initiation factor IIE

Probab=85.35  E-value=0.87  Score=29.97  Aligned_cols=17  Identities=18%  Similarity=0.188  Sum_probs=9.8

Q ss_pred             ccceecCccCccccChH
Q psy4421          41 KYKYGCYRCSYFTYESN   57 (167)
Q Consensus        41 ~~~~~C~~C~~~~~~~~   57 (167)
                      ..-|.|+.|+..|....
T Consensus        97 ~~~Y~Cp~C~~~y~~~e  113 (147)
T smart00531       97 NAYYKCPNCQSKYTFLE  113 (147)
T ss_pred             CcEEECcCCCCEeeHHH
Confidence            33466666666665443

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=85.35  E-value=0.49  Score=35.35  Aligned_cols=48  Identities=19%  Similarity=0.449  Sum_probs=25.7

Q ss_pred             cCCCCCccccCchhHHHHHhhhCCCCceeCCCCc----ccccCchhHHHHhhh
Q psy4421         117 VCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCN----YECRQNVHLKSHMKS  165 (167)
Q Consensus       117 ~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~----~~f~~~~~l~~H~~~  165 (167)
                      .|..|...|.....|..|+|..+ |+-|.|..=+    .-|....+|.+|.+.
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~HF~~  273 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAHFRN  273 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHHhhc
Confidence            56666666666677777766433 3333333222    224455566666653

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=85.06  E-value=0.81  Score=23.45  Aligned_cols=28  Identities=18%  Similarity=0.627  Sum_probs=17.6

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccc
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYEC  153 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f  153 (167)
                      .|.|..||..|...           ...+..|+.||.+-
T Consensus         2 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~rI   29 (44)
T smart00659        2 IYICGECGRENEIK-----------SKDVVRCRECGYRI   29 (44)
T ss_pred             EEECCCCCCEeecC-----------CCCceECCCCCceE
Confidence            36777777766543           13457788887643

present in RNA polymerase I, II and III

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.00  E-value=0.41  Score=33.61  Aligned_cols=44  Identities=20%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             CCcccccccccccCchHHHHHHhhhhhccccC---CCC-------Cccc-----eecCccCccccCh
Q psy4421           5 LNINQCVHCHLTLTKSTEVIVKHAQTCISMVR---PDS-------FKYK-----YGCYRCSYFTYES   56 (167)
Q Consensus         5 ~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~---~~~-------~~~~-----~~C~~C~~~~~~~   56 (167)
                      ++.++|++|+..|....-..        ...+   .++       +..|     ..|+.||+.+...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs--------~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRS--------GKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEc--------CCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            57789999999998864322        2221   122       2222     5799999977644

>KOG2893|consensus

Probab=84.53  E-value=0.29  Score=34.54  Aligned_cols=45  Identities=31%  Similarity=0.595  Sum_probs=35.3

Q ss_pred             cccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHH-Hhhh
Q psy4421          82 CIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTH-LRLH  138 (167)
Q Consensus        82 c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H-~~~h  138 (167)
                      |=.|++. |....-|++|++.           +-|+|.+|-+...+...|..| +++|
T Consensus        13 cwycnre-fddekiliqhqka-----------khfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   13 CWYCNRE-FDDEKILIQHQKA-----------KHFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             eeecccc-cchhhhhhhhhhh-----------ccceeeeehhhhccCCCceeehhhhh
Confidence            8889988 8888888887766           678899998877777777777 5555

>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function

Probab=84.11  E-value=0.68  Score=29.65  Aligned_cols=15  Identities=20%  Similarity=0.569  Sum_probs=13.1

Q ss_pred             cccccccccccCchH
Q psy4421           7 INQCVHCHLTLTKST   21 (167)
Q Consensus         7 ~~~C~~C~~~f~~~~   21 (167)
                      |+.|..|+..|.+.+
T Consensus         1 PH~Ct~Cg~~f~dgs   15 (131)
T PF09845_consen    1 PHQCTKCGRVFEDGS   15 (131)
T ss_pred             CcccCcCCCCcCCCc
Confidence            678999999998876

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=83.45  E-value=2.2  Score=23.29  Aligned_cols=34  Identities=26%  Similarity=0.676  Sum_probs=21.9

Q ss_pred             CCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcc
Q psy4421         113 HFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY  151 (167)
Q Consensus       113 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  151 (167)
                      ...|.|+.||.....+..   .-|..  ..+|.|+.||.
T Consensus        23 ~~~F~CPnCG~~~I~RC~---~CRk~--~~~Y~CP~CGF   56 (59)
T PRK14890         23 AVKFLCPNCGEVIIYRCE---KCRKQ--SNPYTCPKCGF   56 (59)
T ss_pred             cCEeeCCCCCCeeEeech---hHHhc--CCceECCCCCC
Confidence            356999999987444322   11112  36899999985

>smart00614 ZnF_BED BED zinc finger

Probab=82.74  E-value=1  Score=23.63  Aligned_cols=22  Identities=23%  Similarity=0.631  Sum_probs=14.8

Q ss_pred             ceeCCCCcccccCc-----hhHHHHhh
Q psy4421         143 PYKCSLCNYECRQN-----VHLKSHMK  164 (167)
Q Consensus       143 ~~~C~~C~~~f~~~-----~~l~~H~~  164 (167)
                      .-.|..|++.+...     +.|.+|++
T Consensus        18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       18 RAKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            35677777766554     57777776

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=82.54  E-value=1  Score=28.68  Aligned_cols=14  Identities=7%  Similarity=-0.446  Sum_probs=6.8

Q ss_pred             CcccCCCCCccccC
Q psy4421         114 FKFVCYACEYNTYM  127 (167)
Q Consensus       114 ~~~~C~~C~~~~~~  127 (167)
                      .|..|+.||..|..
T Consensus        25 ~p~vcP~cg~~~~~   38 (129)
T TIGR02300        25 RPAVSPYTGEQFPP   38 (129)
T ss_pred             CCccCCCcCCccCc
Confidence            34455555554433

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=82.33  E-value=0.96  Score=30.39  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.2

Q ss_pred             cccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCc
Q psy4421          82 CIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEY  123 (167)
Q Consensus        82 c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~  123 (167)
                      |++||..                     ..++.|.+||+|+-
T Consensus       137 C~vCGy~---------------------~~ge~P~~CPiCga  157 (166)
T COG1592         137 CPVCGYT---------------------HEGEAPEVCPICGA  157 (166)
T ss_pred             cCCCCCc---------------------ccCCCCCcCCCCCC
Confidence            9999987                     66688999999994

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=82.03  E-value=0.43  Score=25.58  Aligned_cols=20  Identities=15%  Similarity=0.514  Sum_probs=10.4

Q ss_pred             CCcccccccccccCchHHHH
Q psy4421           5 LNINQCVHCHLTLTKSTEVI   24 (167)
Q Consensus         5 ~~~~~C~~C~~~f~~~~~l~   24 (167)
                      +.-+.|+-|+..|....++.
T Consensus        15 E~~lrCPRC~~~FR~~K~Y~   34 (65)
T COG4049          15 EEFLRCPRCGMVFRRRKDYI   34 (65)
T ss_pred             ceeeeCCchhHHHHHhHHHH
Confidence            33445555555555555555

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=81.72  E-value=1.3  Score=23.91  Aligned_cols=43  Identities=16%  Similarity=0.372  Sum_probs=25.9

Q ss_pred             CcccCCC-CCccccCchhHHHHHhhhCCCCceeCCC----CcccccCc
Q psy4421         114 FKFVCYA-CEYNTYMSGNIKTHLRLHLDDKPYKCSL----CNYECRQN  156 (167)
Q Consensus       114 ~~~~C~~-C~~~~~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~  156 (167)
                      .+..|+. |+..-..+..|..|....-..++..|.+    |+..+...
T Consensus         8 ~~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~   55 (60)
T PF02176_consen    8 RPVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPRE   55 (60)
T ss_dssp             SEEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHH
T ss_pred             CEeeCCCCCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchh
Confidence            4567877 3333334668899998777778889999    88776543

>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.90  E-value=0.51  Score=21.61  Aligned_cols=18  Identities=28%  Similarity=0.606  Sum_probs=11.5

Q ss_pred             eeCCCCcccccCchhHHHH
Q psy4421         144 YKCSLCNYECRQNVHLKSH  162 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H  162 (167)
                      |.|..|++.| ...++..|
T Consensus         1 ~sCiDC~~~F-~~~~y~~H   18 (28)
T PF08790_consen    1 FSCIDCSKDF-DGDSYKSH   18 (28)
T ss_dssp             EEETTTTEEE-EGGGTTT-
T ss_pred             CeeecCCCCc-CcCCcCCC
Confidence            5688899888 44444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.

>KOG2482|consensus

Probab=80.31  E-value=2.3  Score=31.86  Aligned_cols=49  Identities=20%  Similarity=0.358  Sum_probs=37.0

Q ss_pred             ccCCCCCccccCchhHHHHHhhhCC---------------------------CCceeCCCCcccccCchhHHHHhh
Q psy4421         116 FVCYACEYNTYMSGNIKTHLRLHLD---------------------------DKPYKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      .+|-.|.....+...|..||..-+.                           ...-.|-.|...|-....|..|+-
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV  355 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence            6888888888888888888774332                           112357789889999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-08
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		1e-06
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		8e-06
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-05
1bbo_A	57	High-Resolution Solution Structure Of The Double Cy		4e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           Y C  C      S++L +H   HTGEKP+         C  C    S D KDL  H    
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYK--------CPECGKSFS-DKKDLTRH---- 68
Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
               R       + C  C  +     N++ H R H  +KPY C  C     Q  HL++H 
Sbjct: 69  ---QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ 125
Query: 164 KS 165
           ++
Sbjct: 126 RT 127

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 44/120 (36%)
Query: 46  CYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSH 105
           C  C     ES+ LK+H L HTGEKPF   +E       C    S D             
Sbjct: 37  CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG------CGKRFSLDF------------ 78
Query: 106 MTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL--CNYECRQNVHLKSHM 163
                                   N++TH+R+H  D+PY C    CN +  Q+ +LKSH+
Sbjct: 79  ------------------------NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKS 165
           + C  C+Y    S ++  HLR+H D++P+KC +C Y  R +  L  H++S
Sbjct: 37  YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS 86

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 59  LKKHILKHTGEKPFSYMYENQQYCIHCNS-YISSDIKDLIEH-CKSCSHMTRPDAFHFKF 116
           LK H  KHTGEKPF         C  C   Y   +  +L+EH  ++C  M R +     F
Sbjct: 23  LKVHNRKHTGEKPFE--------CPKCGKCYFRKE--NLLEHEARNC--MNRSEQV---F 67
Query: 117 VCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
            C  C+        ++ H+  H  + PYKCS C+ +  Q   L+SHM
Sbjct: 68  TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114

>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2 Zinc Finger From The Human Enhancer Binding Protein Mbp-1 Length = 57

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKS 165
           K++C  C         +K H+R H D +PY C+ CN+  +   +L  HMKS
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	9e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	6e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-04

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 46/112 (41%)

Query: 58  NLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFV 117
           +       H+GEKP+         C  C+                 +             
Sbjct: 2   SSGSSGRTHSGEKPYE--------CYICH--------------ARFTQ------------ 27

Query: 118 CYACEYNTYMSGNIKTHLRLHL--DDKPYKCSLCNYECRQNVHLKSHMKSNH 167
                     SG +K H+      +   + C  C+    +   L  H++  H
Sbjct: 28  ----------SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.0 bits (92), Expect = 5e-05
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 129 GNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
           G+  +  R H  +KPY+C +C+    Q+  +K H+ 
Sbjct: 1   GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL 36

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 116 FVCYACEYNTYMSGNIKTHLRLHLD---DKPYKCSLCNYECRQNVHLKSHMKSNH 167
             C  C +      ++  H R H +      + C  C     +   + +H   +H
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 118 CYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
           C  C Y+      ++ H R+H  D+P+KC+ C+++ +Q  +L  HMK
Sbjct: 12  CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 41.7 bits (99), Expect = 5e-06
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 44/110 (40%)

Query: 55  ESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHF 114
           +S +L +HI  HTG+KPF         C  C               ++ S          
Sbjct: 18  QSGSLTRHIRIHTGQKPFQ--------CRICM--------------RNFSR--------- 46

Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
                        S ++ TH+R H  +KP+ C +C  +  ++   K H K
Sbjct: 47  -------------SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.1 bits (98), Expect = 9e-06
 Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 13/114 (11%)

Query: 55  ESNNLKKHILKHTGEKPFSYMYENQQYCIHCN-SYISSDIKDLIEHCKSCSHMTRPDAFH 113
             ++ K +    TG   F         C  C+ +Y +    +L  H     H    D  H
Sbjct: 3   SGSSGKLYGSIFTGASKFR--------CKDCSAAYDTLV--ELTVHMNETGH--YRDDNH 50

Query: 114 FKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
                    ++     ++          K  KC  C +       L  HM    
Sbjct: 51  ETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 49/124 (39%)

Query: 47  YRCSYFT-----YESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHC- 100
           + C+Y       ++ ++L+ H  KHTGEKP+            C+           + C 
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPY-----------QCDF----------KDCE 45

Query: 101 KSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLK 160
           +  S                       S  +K H R H   KP++C  C  +  ++ HLK
Sbjct: 46  RRFSR----------------------SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83

Query: 161 SHMK 164
           +H +
Sbjct: 84  THTR 87

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 25/114 (21%), Positives = 35/114 (30%), Gaps = 50/114 (43%)

Query: 55  ESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHF 114
            S+ LK+H  +HTG KPF         C  C               +  S          
Sbjct: 50  RSDQLKRHQRRHTGVKPFQ--------CKTCQ--------------RKFSR--------- 78

Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYEC----RQNVHLKSHMK 164
                        S ++KTH R H  +KP+ C      C     ++  L  H  
Sbjct: 79  -------------SDHLKTHTRTHTGEKPFSCRWP--SCQKKFARSDELVRHHN 117

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 38.2 bits (88), Expect = 6e-05
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN 166
           K++C  C         +K H+R H D +PY C+ CN+  +   +L  HMKS 
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 22/121 (18%), Positives = 33/121 (27%), Gaps = 45/121 (37%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
           + C  C      S++L  HI  HTGEKPF+        C  C               +  
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFA--------CDICG--------------RKF 41

Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
           +                       S   K H  +     P           +N HL++ +
Sbjct: 42  AR----------------------SDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEV 78

Query: 164 K 164
            
Sbjct: 79  A 79

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 42/109 (38%)

Query: 56  SNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFK 115
           S++LK H+  HTGEKP+                              C+           
Sbjct: 30  SSHLKAHLRTHTGEKPYK-----------------------------CTWE--------- 51

Query: 116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
                C++    S  +  H R H   KP++C +CN    ++ HL  HMK
Sbjct: 52  ----GCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 21/128 (16%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHC-NSYISSDIKDLIEHCKS 102
             C  C         LK H  KHTGEKPF         C  C   Y   +  +L+EH   
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFE--------CPKCGKCYFRKE--NLLEH--- 54

Query: 103 CSHMTRPDAFHFK---FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHL 159
                  +  +     F C  C+        ++ H+  H  + PYKCS C+ +  Q   L
Sbjct: 55  ----EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110

Query: 160 KSHMKSNH 167
           +SHM   H
Sbjct: 111 QSHMIKLH 118

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 35/126 (27%), Positives = 46/126 (36%), Gaps = 50/126 (39%)

Query: 44  YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHC-KS 102
           + C  C     ES+ LK+H L HTGEKPF            C            E C K 
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTGEKPFQ-----------CTF----------EGCGKR 73

Query: 103 CSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYEC----RQNVH 158
            S                         N++TH+R+H  D+PY C      C     Q+ +
Sbjct: 74  FSL----------------------DFNLRTHVRIHTGDRPYVCP--FDGCNKKFAQSTN 109

Query: 159 LKSHMK 164
           LKSH+ 
Sbjct: 110 LKSHIL 115

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
           S  +  H+R+H   KP++C +C     ++ HL +H++
Sbjct: 34  SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.98
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.96
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.94
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.93
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.9
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.82
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.81
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.8
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.8
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.79
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.79
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.79
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.79
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.78
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.78
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.78
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.77
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.77
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.76
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.76
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.74
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.73
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.71
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.69
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.66
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.66
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.65
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.65
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.64
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.64
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.64
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.64
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.64
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.63
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.62
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.62
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.61
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.61
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.61
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.6
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.6
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.6
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.59
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.59
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.59
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.59
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.59
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.59
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.58
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.57
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.57
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.55
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.55
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.54
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.52
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.51
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.5
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.5
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.5
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.49
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.47
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.46
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.43
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.43
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.4
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.39
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.37
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.37
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.37
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.31
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.29
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.29
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.28
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.28
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.28
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.27
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.27
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.26
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.26
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.26
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.26
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.26
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.26
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.25
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.25
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.25
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.24
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.23
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.23
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.21
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.2
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.18
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.18
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.16
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.15
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.14
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.14
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.14
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.14
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.14
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.13
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.12
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.11
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.1
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.1
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.1
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.09
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.09
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.09
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.08
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.07
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.06
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.06
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.05
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.04
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.03
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.03
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.03
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.01
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.98
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.97
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.95
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.94
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.94
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.94
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.89
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.85
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.85
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.83
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.79
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.78
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.76
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.74
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.72
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.71
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.69
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.68
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.66
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.65
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.64
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.62
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.58
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.58
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.56
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.53
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.5
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.49
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.49
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.47
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.45
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.43
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.81
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.43
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.42
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.41
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.4
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.4
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.4
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.4
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.39
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.39
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.38
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.37
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.37
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.37
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.36
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.35
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.33
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.33
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.32
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.32
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.65
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.28
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.27
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.27
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.58
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.26
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.57
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.57
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.24
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.21
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.2
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.19
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.29
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.93
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.93
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.43
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.18
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.69
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.46
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.33
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.05
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.66
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.56
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.38
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	93.84
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	93.14
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	92.71
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.11
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	90.09
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	90.01
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	89.95
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	87.26
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	87.15
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	85.67
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	83.63
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	83.56
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	81.6
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.54
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	81.09

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1.4e-33  Score=192.64  Aligned_cols=150  Identities=24%  Similarity=0.449  Sum_probs=99.5

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCccc-----
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMY-----   76 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~-----   76 (167)
                      +++++||.|+.|++.|.....|.        .|++.|.++++|.|+.|++.|.....|..|++.|.++++|.|..     
T Consensus        16 ~~~~~~~~C~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   87 (190)
T 2i13_A           16 EPGEKPYACPECGKSFSRSDHLA--------EHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSF   87 (190)
T ss_dssp             ---------------CCSSHHHH--------HGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             cCCCCCCcCCCCccccCCHHHHH--------HHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCcc
Confidence            45677777777777777777777        77777777777777777777777777777777777777766432     


Q ss_pred             ---------------ccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCC
Q psy4421          77 ---------------ENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus        77 ---------------~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                                     +....|+.|++. |.+...|..|+.+       +.++++|.|++|++.|.....|..|+++|.++
T Consensus        88 ~~~~~l~~H~~~h~~~~~~~C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  159 (190)
T 2i13_A           88 SQRANLRAHQRTHTGEKPYACPECGKS-FSQLAHLRAHQRT-------HTGEKPYKCPECGKSFSREDNLHTHQRTHTGE  159 (190)
T ss_dssp             SCHHHHHHHHHHHHTCCCEECTTTCCE-ESSHHHHHHHHHH-------HHCCCCEECTTTCCEESCHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHhcCCCCCCcCCCCCCc-cCCHHHHHHHHHH-------hCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence                           122347777777 7777777777777       77778888888888888888888888888888


Q ss_pred             CceeCCCCcccccCchhHHHHhhhcC
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++|.|+.|++.|.....|..|+++|+
T Consensus       160 ~~~~C~~C~~~f~~~~~L~~H~~~H~  185 (190)
T 2i13_A          160 KPYKCPECGKSFSRRDALNVHQRTHT  185 (190)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTTC-
T ss_pred             CCeECCCCCCccCCHHHHHHHHHhcC
Confidence            88888888888888888888888764

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.98  E-value=6.5e-33  Score=189.39  Aligned_cols=126  Identities=25%  Similarity=0.458  Sum_probs=61.3

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCccc--------------------ccCcccccccccccCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMY--------------------ENQQYCIHCNSYISSD   92 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~--------------------~~~~~c~~c~~~~~~~   92 (167)
                      .|+..+.++++|.|+.|++.|.....|..|++.|.++++|.|..                    +....|+.|++. |.+
T Consensus        11 ~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~-f~~   89 (190)
T 2i13_A           11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS-FSQ   89 (190)
T ss_dssp             --------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCE-ESC
T ss_pred             hhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCc-cCC
Confidence            78888999999999999999999999999999999999999432                    122334444444 444


Q ss_pred             hHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421          93 IKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus        93 ~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      ...|..|+..       +.++++|.|++|++.|.....|..|+++|.++++|.|..|++.|...+.|..|+++|
T Consensus        90 ~~~l~~H~~~-------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H  156 (190)
T 2i13_A           90 RANLRAHQRT-------HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH  156 (190)
T ss_dssp             HHHHHHHHHH-------HHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-------cCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            4444444444       444455555555555555555555555555555555555555555555555555544

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.97  E-value=6.4e-30  Score=169.06  Aligned_cols=139  Identities=22%  Similarity=0.398  Sum_probs=129.5

Q ss_pred             CCcccccccccccCchHHHHHHhhhhhccccC---CCCCccceecCcc-----CccccChHHHHHHHHHhhCCCCCCccc
Q psy4421           5 LNINQCVHCHLTLTKSTEVIVKHAQTCISMVR---PDSFKYKYGCYRC-----SYFTYESNNLKKHILKHTGEKPFSYMY   76 (167)
Q Consensus         5 ~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~---~~~~~~~~~C~~C-----~~~~~~~~~l~~H~~~h~~~~~~~~~~   76 (167)
                      |.+|.|+.|++.|.....|.        .|+.   .|.++++|.|.+|     ++.|.....|..|+++|.++++|.   
T Consensus         1 E~~~~C~~C~~~f~~~~~L~--------~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~---   69 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLV--------HHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHK---   69 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHH--------HHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCC---
T ss_pred             CCcCCcCCCccccCCHHHHH--------HHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCcc---
Confidence            46899999999999999999        7776   6888899988753     499999999999999999999999   


Q ss_pred             ccCccccc--ccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCC--CCccccCchhHHHHH-hhhCCCCceeCCC--C
Q psy4421          77 ENQQYCIH--CNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYA--CEYNTYMSGNIKTHL-RLHLDDKPYKCSL--C  149 (167)
Q Consensus        77 ~~~~~c~~--c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~-~~h~~~~~~~C~~--C  149 (167)
                           |+.  |++. |.....|..|+.+       +.++++|.|++  |++.|.....|..|+ ++|.++++|.|..  |
T Consensus        70 -----C~~~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  136 (155)
T 2gli_A           70 -----CTFEGCRKS-YSRLENLKTHLRS-------HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGC  136 (155)
T ss_dssp             -----CCSTTCCCC-CSSHHHHHHHHHH-------TTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTT
T ss_pred             -----CCCCCCCCc-ccCHHHHHHHHHH-------cCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCC
Confidence                 875  9999 9999999999999       99999999998  999999999999998 8999999999998  9


Q ss_pred             cccccCchhHHHHhhhcC
Q psy4421         150 NYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       150 ~~~f~~~~~l~~H~~~hh  167 (167)
                      ++.|...+.|..|+++||
T Consensus       137 ~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          137 TKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             CCEESSHHHHHHHHHHSC
T ss_pred             ccccCCHHHHHHHHHhhc
Confidence            999999999999999987

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=1.7e-30  Score=177.31  Aligned_cols=142  Identities=22%  Similarity=0.372  Sum_probs=111.9

Q ss_pred             CCcCCcccc--cccccccCchHHHHHHhhhhhccccCCCCCccceec--CccCccccChHHHHHHHHHhhCCCCCCcccc
Q psy4421           2 QESLNINQC--VHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGC--YRCSYFTYESNNLKKHILKHTGEKPFSYMYE   77 (167)
Q Consensus         2 ~~~~~~~~C--~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C--~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~   77 (167)
                      +...++|.|  +.|++.|.....|.        .|++.|.++++|.|  ..|++.|.....|..|+++|.++++|.    
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~--------~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~----   74 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQ--------AHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT----   74 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHH--------HHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEE----
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHH--------HHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCcee----
Confidence            456778888  67888888888888        77777778888888  778888888888888888888888888    


Q ss_pred             cCcccc--cccccccCChHHHHHHH-hhcCCCCCCC-CCCCcccC--CCCCccccCchhHHHHHhhhCCCCceeCCC--C
Q psy4421          78 NQQYCI--HCNSYISSDIKDLIEHC-KSCSHMTRPD-AFHFKFVC--YACEYNTYMSGNIKTHLRLHLDDKPYKCSL--C  149 (167)
Q Consensus        78 ~~~~c~--~c~~~~~~~~~~l~~h~-~~~~~~~~~~-~~~~~~~C--~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C  149 (167)
                          |.  .|++. |.+...|..|+ ..       + .++++|.|  +.|++.|.....|..|+++|.++++|.|+.  |
T Consensus        75 ----C~~~~C~~~-f~~~~~l~~H~~~~-------h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C  142 (190)
T 1tf6_A           75 ----CDSDGCDLR-FTTKANMKKHFNRF-------HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGC  142 (190)
T ss_dssp             ----CCSSSCCCE-ESCHHHHHHHHHTT-------SSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSC
T ss_pred             ----CCCCCCCCc-cCCHHHHHHHHHHh-------cCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence                77  78888 78888888887 44       4 35667888  778888888888888888888888888876  8


Q ss_pred             cccccCchhHHHHhhhcC
Q psy4421         150 NYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       150 ~~~f~~~~~l~~H~~~hh  167 (167)
                      ++.|.+.+.|..|+++|+
T Consensus       143 ~k~F~~~~~L~~H~~~H~  160 (190)
T 1tf6_A          143 DKRFSLPSRLKRHEKVHA  160 (190)
T ss_dssp             CCBCSSHHHHHHHHTSSC
T ss_pred             CchhcCHHHHHHHHHHhC
Confidence            888888888888887764

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.96  E-value=3.7e-29  Score=170.73  Aligned_cols=139  Identities=18%  Similarity=0.330  Sum_probs=130.8

Q ss_pred             CCcCCcccc--cccccccCchHHHHHHhhhhhccccCCCCCccceecC--ccCccccChHHHHHHH-HHh-hCCCCCCcc
Q psy4421           2 QESLNINQC--VHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCY--RCSYFTYESNNLKKHI-LKH-TGEKPFSYM   75 (167)
Q Consensus         2 ~~~~~~~~C--~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~-~~h-~~~~~~~~~   75 (167)
                      |.+++||.|  +.|++.|.....|.        .|++.|.++++|.|.  .|++.|.....|..|+ +.| .++++|.  
T Consensus        37 h~~~~~~~C~~~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~--  106 (190)
T 1tf6_A           37 HTGEKPFPCKEEGCEKGFTSLHHLT--------RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYV--  106 (190)
T ss_dssp             HHCCCSSCCSSTTCCCCCSSHHHHH--------HHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCE--
T ss_pred             cCCCCCccCCCCCCChhhCCHHHHH--------HHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceee--
Confidence            567899999  88999999999999        999999999999999  8999999999999999 567 4678898  


Q ss_pred             cccCccc--ccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCC--CCccccCchhHHHHHhhhCCCCceeCCC---
Q psy4421          76 YENQQYC--IHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYA--CEYNTYMSGNIKTHLRLHLDDKPYKCSL---  148 (167)
Q Consensus        76 ~~~~~~c--~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~---  148 (167)
                            |  ..|++. |.+...|..|+.+       +.++++|.|+.  |++.|.....|..|+++|.|   |.|..   
T Consensus       107 ------C~~~~C~k~-f~~~~~L~~H~~~-------H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~  169 (190)
T 1tf6_A          107 ------CHFENCGKA-FKKHNQLKVHQFS-------HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDS  169 (190)
T ss_dssp             ------ECSSSSCEE-CSSHHHHHHHHGG-------GSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTT
T ss_pred             ------CCCCCCccc-cCCHHHHHHHHHH-------hCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCc
Confidence                  8  889999 9999999999999       99999999988  99999999999999999987   89999   


Q ss_pred             CcccccCchhHHHHhhhcC
Q psy4421         149 CNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       149 C~~~f~~~~~l~~H~~~hh  167 (167)
                      |++.|.....|..|+++||
T Consensus       170 C~~~f~~~~~l~~H~~~h~  188 (190)
T 1tf6_A          170 CSFVGKTWTLYLKHVAECH  188 (190)
T ss_dssp             CCCCCSCHHHHHHHHTTCC
T ss_pred             CCCccccHHHHHHHHHhhc
Confidence            9999999999999999986

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=2.6e-26  Score=146.23  Aligned_cols=116  Identities=31%  Similarity=0.473  Sum_probs=100.4

Q ss_pred             CCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccC
Q psy4421          39 SFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVC  118 (167)
Q Consensus        39 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C  118 (167)
                      +++++|.|+.|++.|.....|..|+++|.++++|.        |+.|++. |.....|..|+....    .+.++++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~--------C~~C~~~-f~~~~~l~~H~~~~~----~~~~~~~~~C   69 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFE--------CPKCGKC-YFRKENLLEHEARNC----MNRSEQVFTC   69 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCB--------CTTTCCB-CSSHHHHHHHHHHCC----CCSCCCCEEC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeE--------CCCCCch-hcCHHHHHHHHhhhh----cCCCCCCeEC
Confidence            35677889999999988889999998888888888        8889888 888888888887511    1456788999


Q ss_pred             CCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         119 YACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       119 ~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++|++.|.....|..|+++|.++++|.|..|++.|.....|..|++..|
T Consensus        70 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             SSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999998644

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.93  E-value=2.7e-26  Score=145.20  Aligned_cols=112  Identities=29%  Similarity=0.512  Sum_probs=100.1

Q ss_pred             CCccceecCc--cCccccChHHHHHHHHHhhCCCCCCcccccCcccc--cccccccCChHHHHHHHhhcCCCCCCCCCCC
Q psy4421          39 SFKYKYGCYR--CSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCI--HCNSYISSDIKDLIEHCKSCSHMTRPDAFHF  114 (167)
Q Consensus        39 ~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~--~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~  114 (167)
                      +++++|.|.+  |++.|.....|..|++.|.++++|.        |+  .|++. |.....|..|+..       +.+++
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~--------C~~~~C~~~-f~~~~~l~~H~~~-------h~~~~   65 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQ--------CDFKDCERR-FSRSDQLKRHQRR-------HTGVK   65 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEE--------CCSTTCCCE-ESSHHHHHHHHHH-------HHCCC
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCcc--------CCCCCCcCc-cCCHHHHHHHHHH-------cCCCC
Confidence            4567888886  8888888888888888888888888        77  68888 8888888888888       78888


Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCCCceeC--CCCcccccCchhHHHHhhhc
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKC--SLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h  166 (167)
                      +|.|++|++.|.....|..|+++|.++++|.|  +.|++.|.+.+.|..|+++|
T Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            89999999999999999999999999999999  78999999999999999986

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.92  E-value=1.7e-25  Score=147.86  Aligned_cols=122  Identities=25%  Similarity=0.322  Sum_probs=99.7

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccCC-CCCccc--------eecCccCccccChHHHHHHHHHhhCCCCC
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRP-DSFKYK--------YGCYRCSYFTYESNNLKKHILKHTGEKPF   72 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~-~~~~~~--------~~C~~C~~~~~~~~~l~~H~~~h~~~~~~   72 (167)
                      +..+.+|.|..|++.|....+|.        .|++. |.+..+        |.|..|++.|.....|..|+++|.++++|
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~--------~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   91 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELV--------THVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPF   91 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHH--------HHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSE
T ss_pred             chhhcccccccCCcccCCHHHHH--------HHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcc
Confidence            45667788888888888888888        77765 555443        77888888888888888888888888888


Q ss_pred             CcccccCccccc--ccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCC--CCccccCchhHHHHHhhhCCCCceeCC
Q psy4421          73 SYMYENQQYCIH--CNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYA--CEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus        73 ~~~~~~~~~c~~--c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      .        |..  |++. |.....|..|+.+       +.++++|.|++  |++.|.....|..|+++|.|++||.|.
T Consensus        92 ~--------C~~~~C~~~-f~~~~~L~~H~~~-------h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           92 P--------CPFPGCGKI-FARSENLKIHKRT-------HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             E--------CSCTTTCCE-ESCHHHHHHHHTT-------TCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             c--------CCcCCCCCc-cCCHHHHHHHHHh-------hCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            8        876  8888 8888888888887       88888888886  888888888888888888888888875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=9.3e-26  Score=145.44  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=98.7

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFH  113 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~  113 (167)
                      |..++.|+++|.|++|++.|.....|..|+++|.+++||.        |+.|++. |.....|..|+.+       +.++
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~--------C~~C~k~-F~~~~~L~~H~~~-------H~~~   76 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYP--------CRYCEKV-FPLAEYRTKHEIH-------HTGE   76 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEE--------CSSSSCE-ESSHHHHHHHHHH-------HHTC
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCee--------CCccCee-cccccchhhhccc-------cCCC
Confidence            3446789999999999999999999999999999999999        9999999 9999999999999       9999


Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCC------CceeCCCCcccccCchh
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDD------KPYKCSLCNYECRQNVH  158 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~------~~~~C~~C~~~f~~~~~  158 (167)
                      ++|.|++|++.|.....|..|++.|+++      ++|.|..|++.|.....
T Consensus        77 k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           77 RRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             CCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             ccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence            9999999999999999999999988765      45899999998876543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.91  E-value=1.1e-24  Score=138.72  Aligned_cols=113  Identities=27%  Similarity=0.411  Sum_probs=56.1

Q ss_pred             Cccccc--ccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccc
Q psy4421           6 NINQCV--HCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCI   83 (167)
Q Consensus         6 ~~~~C~--~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~   83 (167)
                      ++|.|+  .|++.|.....|.        .|++.| ++++|.|..|++.|.....|..|+++|.++++|.        |+
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~--------~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~--------C~   66 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMR--------KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ--------CT   66 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHH--------HHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEE--------CC
T ss_pred             CcccCCCCCCcCccCCHHHHH--------HHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCee--------CC
Confidence            455555  4555555555555        444444 4445555555555555555555555555555555        43


Q ss_pred             c--ccccccCChHHHHHHHhhcCCCCCCCCCCCcccCC--CCCccccCchhHHHHHhhhCCCCc
Q psy4421          84 H--CNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCY--ACEYNTYMSGNIKTHLRLHLDDKP  143 (167)
Q Consensus        84 ~--c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~  143 (167)
                      .  |++. |.....|..|+.+       +.++++|.|+  .|++.|.....|..|+++|.++++
T Consensus        67 ~~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~  122 (124)
T 1ubd_C           67 FEGCGKR-FSLDFNLRTHVRI-------HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN  122 (124)
T ss_dssp             STTCCCE-ESCHHHHHHHHHH-------HHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC----
T ss_pred             CCCCcCc-cCCHHHHHHHHHH-------hCCCCceECCCCCCCCccCCHHHHHHHHHHHccccc
Confidence            2  5555 4555555555544       4444555553  255555555555555555554443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=9.8e-25  Score=138.85  Aligned_cols=116  Identities=18%  Similarity=0.351  Sum_probs=108.1

Q ss_pred             CcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHH---hhCCCCCCcccccC
Q psy4421           3 ESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILK---HTGEKPFSYMYENQ   79 (167)
Q Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~---h~~~~~~~~~~~~~   79 (167)
                      +++++|.|+.|++.|.....|.        .|++.|.++++|.|+.|++.|.....|..|++.   +.++++|.      
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~------   68 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLK--------VHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT------   68 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHH--------HHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEE------
T ss_pred             CCCCCCCCCCCCCcCCCHHHHH--------HHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeE------
Confidence            6789999999999999999999        888899999999999999999999999999985   57788898      


Q ss_pred             cccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHh-hhCCCC
Q psy4421          80 QYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLR-LHLDDK  142 (167)
Q Consensus        80 ~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~  142 (167)
                        |+.|++. |.....|..|+.+       +.++++|.|++|++.|.....|..|++ .|.++.
T Consensus        69 --C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           69 --CSVCQET-FRRRMELRLHMVS-------HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             --CSSSCCE-ESSHHHHHHHHHH-------HSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             --CCCCCCc-cCCHHHHHHHHHH-------cCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence              9999999 9999999999999       999999999999999999999999987 576653

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.91  E-value=8.5e-25  Score=139.31  Aligned_cols=111  Identities=26%  Similarity=0.501  Sum_probs=102.8

Q ss_pred             CccceecC--ccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCccc
Q psy4421          40 FKYKYGCY--RCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFV  117 (167)
Q Consensus        40 ~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~  117 (167)
                      ++++|.|+  .|++.|.+...|..|+++| ++++|.        |..|++. |.....|..|+.+       +.++++|.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~--------C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~   64 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHV--------CAECGKA-FVESSKLKRHQLV-------HTGEKPFQ   64 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEE--------CTTTCCE-ESSHHHHHHHGGG-------TSCCCCEE
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeE--------CCCCCch-hCCHHHHHHHHHH-------cCCCCCee
Confidence            35679999  8999999999999999999 888999        9999999 9999999999999       99999999


Q ss_pred             CCC--CCccccCchhHHHHHhhhCCCCceeCC--CCcccccCchhHHHHhhhcC
Q psy4421         118 CYA--CEYNTYMSGNIKTHLRLHLDDKPYKCS--LCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       118 C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~hh  167 (167)
                      |+.  |++.|.....|..|+++|.++++|.|+  .|++.|.+.++|..|+++|+
T Consensus        65 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~  118 (124)
T 1ubd_C           65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA  118 (124)
T ss_dssp             CCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHc
Confidence            986  999999999999999999999999996  59999999999999999875

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=9e-25  Score=138.14  Aligned_cols=112  Identities=25%  Similarity=0.408  Sum_probs=106.8

Q ss_pred             CcCCcccccc--cccccCchHHHHHHhhhhhccccCCCCCccceecC--ccCccccChHHHHHHHHHhhCCCCCCccccc
Q psy4421           3 ESLNINQCVH--CHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCY--RCSYFTYESNNLKKHILKHTGEKPFSYMYEN   78 (167)
Q Consensus         3 ~~~~~~~C~~--C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~   78 (167)
                      ++++||.|..  |++.|.....|.        .|++.|.++++|.|+  .|++.|.....|..|+++|.++++|.     
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~-----   68 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQ--------MHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ-----   68 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHH--------HHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEE-----
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHH--------HHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCcc-----
Confidence            6789999997  999999999999        888888899999999  79999999999999999999999999     


Q ss_pred             CcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccC--CCCCccccCchhHHHHHhhh
Q psy4421          79 QQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVC--YACEYNTYMSGNIKTHLRLH  138 (167)
Q Consensus        79 ~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C--~~C~~~~~~~~~l~~H~~~h  138 (167)
                         |+.|++. |.....|..|+.+       +.++++|.|  +.|++.|.....|..|+++|
T Consensus        69 ---C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           69 ---CKTCQRK-FSRSDHLKTHTRT-------HTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ---CTTTCCE-ESCHHHHHHHHHH-------HHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             ---CCccCch-hCCHHHHHHHHHH-------hcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence               9999999 9999999999999       999999999  89999999999999999876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.90  E-value=5.8e-25  Score=141.72  Aligned_cols=110  Identities=19%  Similarity=0.315  Sum_probs=97.0

Q ss_pred             CCCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCc
Q psy4421           1 VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQ   80 (167)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~   80 (167)
                      |++|+++|.|++|+++|.....|.        .|+++|.++++|.|++|++.|.....|..|+++|++++||.       
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~~L~--------~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~-------   80 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLTSLR--------RHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ-------   80 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHHHHH--------HHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEE-------
T ss_pred             ecCCCcCeECCCCCCCcCCHHHHH--------HHHHHcCCCCCeeCCccCeecccccchhhhccccCCCcccc-------
Confidence            478999999999999999999999        89999999999999999999999999999999999999999       


Q ss_pred             ccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCc
Q psy4421          81 YCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMS  128 (167)
Q Consensus        81 ~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  128 (167)
                       |++|++. |.....|..|+.+... ..+....++|+|.+|++.|...
T Consensus        81 -C~~C~k~-F~~~~~L~~H~~~hh~-~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           81 -CLACGKS-FINYQFMSSHIKSVHS-QDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             -ESSSCCE-ESSHHHHHHHHHHHTC-CCTTSSSCCEEECCCCSSCCCC
T ss_pred             -CCCCCCC-cCCHHHHHHHhHHhcC-CCCCCCCCCeecCCCCchhhhc
Confidence             9999999 9999999999988221 1122334679999999887654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.90  E-value=1e-23  Score=139.27  Aligned_cols=122  Identities=21%  Similarity=0.287  Sum_probs=105.9

Q ss_pred             CCCccceecCccCccccChHHHHHHHHH-hhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcc
Q psy4421          38 DSFKYKYGCYRCSYFTYESNNLKKHILK-HTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKF  116 (167)
Q Consensus        38 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~-h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~  116 (167)
                      +.+..+|.|..|++.|.....|..|++. |.++.+..........|..|++. |.....|..|+.+       +.++++|
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~   91 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKS-FKAKYKLVNHIRV-------HTGEKPF   91 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCC-CSSHHHHHHHTHH-------HHCCCSE
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccc-cCCHHHHHHHHHh-------cCCCCcc
Confidence            4556779999999999999999999997 77765511111111129999999 9999999999999       8999999


Q ss_pred             cCCC--CCccccCchhHHHHHhhhCCCCceeCCC--CcccccCchhHHHHhhhcC
Q psy4421         117 VCYA--CEYNTYMSGNIKTHLRLHLDDKPYKCSL--CNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       117 ~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh  167 (167)
                      .|+.  |++.|.....|..|+++|.++++|.|..  |++.|...+.|..|+++|+
T Consensus        92 ~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  146 (155)
T 2rpc_A           92 PCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT  146 (155)
T ss_dssp             ECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTT
T ss_pred             cCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhc
Confidence            9998  9999999999999999999999999997  9999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=6.6e-23  Score=135.25  Aligned_cols=116  Identities=21%  Similarity=0.342  Sum_probs=106.9

Q ss_pred             CCCcCCccccccc-----ccccCchHHHHHHhhhhhccccCCCCCccceecCc--cCccccChHHHHHHHHHhhCCCCCC
Q psy4421           1 VQESLNINQCVHC-----HLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYR--CSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus         1 ~~~~~~~~~C~~C-----~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      ++.++++|.|..|     ++.|.....|.        .|++.|.++++|.|+.  |++.|.....|..|+++|.++++|.
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~--------~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~   99 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLV--------VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYM   99 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHH--------HHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEE
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHH--------HHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCee
Confidence            3678899998753     49999999999        9999999999999985  9999999999999999999999999


Q ss_pred             cccccCccccc--ccccccCChHHHHHHH-hhcCCCCCCCCCCCcccCCC--CCccccCchhHHHHHhhhCC
Q psy4421          74 YMYENQQYCIH--CNSYISSDIKDLIEHC-KSCSHMTRPDAFHFKFVCYA--CEYNTYMSGNIKTHLRLHLD  140 (167)
Q Consensus        74 ~~~~~~~~c~~--c~~~~~~~~~~l~~h~-~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~  140 (167)
                              |+.  |++. |.+...|..|+ .+       +.++++|.|++  |++.|.....|..|+++|+|
T Consensus       100 --------C~~~~C~~~-f~~~~~L~~H~~~~-------H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          100 --------CEHEGCSKA-FSNASDRAKHQNRT-------HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             --------CCSTTCCCE-ESSSSTTHHHHHHT-------TCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             --------CCCCCCCCc-cCCHHHHHHHHHHh-------cCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence                    998  9999 99999999998 77       88999999988  99999999999999999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.82  E-value=9e-20  Score=112.84  Aligned_cols=93  Identities=24%  Similarity=0.359  Sum_probs=86.3

Q ss_pred             CCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCccc
Q psy4421          38 DSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFV  117 (167)
Q Consensus        38 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~  117 (167)
                      ...+++|.|..|++.|.....|..|+++|.++++|.        |..|++. |.....|..|+.+       +.++++|.
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~--------C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~   75 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYT--------CDICHKA-FRRQDHLRDHRYI-------HSKEKPFK   75 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCB--------CSSSCCB-CSCHHHHHHHGGG-------SCCCCTTS
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcC--------CCCccch-hCCHHHHHHHHHH-------hCCCCCeE
Confidence            345678999999999999999999999999999999        9999999 9999999999998       88999999


Q ss_pred             CCCCCccccCchhHHHHHhhhCCCCceeC
Q psy4421         118 CYACEYNTYMSGNIKTHLRLHLDDKPYKC  146 (167)
Q Consensus       118 C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  146 (167)
                      |++|++.|.....|..|+++|.++++|.+
T Consensus        76 C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           76 CQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            99999999999999999999999998864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=8.2e-20  Score=111.03  Aligned_cols=87  Identities=29%  Similarity=0.495  Sum_probs=45.0

Q ss_pred             CccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCC
Q psy4421          40 FKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCY  119 (167)
Q Consensus        40 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~  119 (167)
                      ++++|.|..|++.|.....|..|++.|.++++|.        |+.|++. |.....|..|+.+       +.++++|.|+
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~--------C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~   68 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK--------CKTCDYA-AADSSSLNKHLRI-------HSDERPFKCQ   68 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEE--------CSSSCCE-ESSHHHHHHHHHH-------SCCCCCEECS
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEe--------CCCCCCc-cCCHHHHHHHHHH-------hCCCCCccCC
Confidence            3445555555555555555555555555555555        5555555 4445555555544       4444445555


Q ss_pred             CCCccccCchhHHHHHhhhCCCC
Q psy4421         120 ACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       120 ~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      +|++.|.....|..|+++|.+++
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           69 ICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             SSSCEESSHHHHHHHHTTCCSCC
T ss_pred             CCCCccCCHHHHHHHHHHhcCCC
Confidence            55555555555555555444443

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.80  E-value=5.1e-20  Score=102.08  Aligned_cols=55  Identities=24%  Similarity=0.475  Sum_probs=53.5

Q ss_pred             CCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         113 HFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       113 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      |+||.|.+|++.|...+.|..|+++|.|++||.|.+||++|.+.++|..|+++|.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Ht   56 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ   56 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGS
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccC
Confidence            7899999999999999999999999999999999999999999999999999984

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.2e-19  Score=112.60  Aligned_cols=96  Identities=21%  Similarity=0.113  Sum_probs=86.0

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAF  112 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~  112 (167)
                      .+++.|.++++|.|.+|++.|.....|..|+++|.  ++|.        |..|++. |.....|..|+ .       +.+
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~--------C~~C~~~-f~~~~~l~~H~-~-------H~~   66 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAV--------CPYCSLR-FFSPELKQEHE-S-------KCE   66 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBC--------CTTTCCC-BSSHHHHHHHH-H-------HCS
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCcc--------CCCCCCc-cCCHHHHHHHH-H-------cCC
Confidence            56678888999999999999999999999999984  5888        9999999 89999999998 5       778


Q ss_pred             CCcccCCCCCccccCchhHHHHHh-hhCCCCceeCC
Q psy4421         113 HFKFVCYACEYNTYMSGNIKTHLR-LHLDDKPYKCS  147 (167)
Q Consensus       113 ~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~C~  147 (167)
                      +++|.|++|++.|.....|..|++ +|.++++|.|.
T Consensus        67 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           67 YKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             TGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            889999999999999999999997 89999998875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.79  E-value=1.5e-19  Score=108.47  Aligned_cols=85  Identities=31%  Similarity=0.516  Sum_probs=49.4

Q ss_pred             ccceecC--ccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccC
Q psy4421          41 KYKYGCY--RCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVC  118 (167)
Q Consensus        41 ~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C  118 (167)
                      +++|.|+  .|++.|.....|..|+++|.++++|.        |+.|++. |.....|..|+.+       +.++++|.|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~--------C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C   65 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ--------CRICMRN-FSRSDHLTTHIRT-------HTGEKPFAC   65 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEE--------CTTTCCE-ESCHHHHHHHHHH-------HHCCCCEEC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCcc--------CCCCCcc-cCCHHHHHHHHHH-------cCCCCCccC
Confidence            4566676  47777777777777776666666665        5566555 5555555555554       444455555


Q ss_pred             CCCCccccCchhHHHHHhhhCCC
Q psy4421         119 YACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       119 ~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      ++|++.|.....|..|+++|.|+
T Consensus        66 ~~C~~~f~~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           66 DICGRKFARSDERKRHTKIHLRQ   88 (90)
T ss_dssp             TTTCCEESSHHHHHHHHGGGGC-
T ss_pred             CCCCchhCCHHHHHHHHHHhccc
Confidence            55555555555555555555544

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=8.8e-20  Score=113.65  Aligned_cols=85  Identities=19%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             CCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcc
Q psy4421          37 PDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKF  116 (167)
Q Consensus        37 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~  116 (167)
                      .|.++++|.| .|++.|.....|..|++.|.++++|.        |+.|++. |.....|..|+.+       +.++++|
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~--------C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~   66 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYG--------CGVCGKK-FKMKHHLVGHMKI-------HTGIKPY   66 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEE--------CTTTSCE-ESSSHHHHHHHTT-------TCCCCCE
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCcc--------CCCCCcc-cCCHHHHHHHHHH-------cCCCCCe
Confidence            4567777888 78888888888888888777777766        6666666 5555555555555       5555555


Q ss_pred             cCCCCCccccCchhHHHHHhhh
Q psy4421         117 VCYACEYNTYMSGNIKTHLRLH  138 (167)
Q Consensus       117 ~C~~C~~~~~~~~~l~~H~~~h  138 (167)
                      .|++|++.|.....|..|++.|
T Consensus        67 ~C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           67 ECNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             ECSSSCCEESCHHHHHHHHHHH
T ss_pred             eCCCCcchhcCHHHHHHHHHHc
Confidence            5555555555555555555544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=4.2e-19  Score=107.82  Aligned_cols=84  Identities=26%  Similarity=0.500  Sum_probs=81.0

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcc
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQY   81 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~   81 (167)
                      +.+++||.|..|++.|.....|.        .|++.|.++++|.|..|++.|.....|..|+++|.++++|.        
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~--------   66 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLK--------THMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK--------   66 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHH--------HHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEE--------
T ss_pred             CCCCcCeECCCCCCccCCHHHHH--------HHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCcc--------
Confidence            57899999999999999999999        99999999999999999999999999999999999999999        


Q ss_pred             cccccccccCChHHHHHHHhh
Q psy4421          82 CIHCNSYISSDIKDLIEHCKS  102 (167)
Q Consensus        82 c~~c~~~~~~~~~~l~~h~~~  102 (167)
                      |+.|++. |.....|..|+.+
T Consensus        67 C~~C~~~-f~~~~~l~~H~~~   86 (96)
T 2dmd_A           67 CQICPYA-SRNSSQLTVHLRS   86 (96)
T ss_dssp             CSSSSCE-ESSHHHHHHHHTT
T ss_pred             CCCCCCc-cCCHHHHHHHHHH
Confidence            9999999 9999999999988

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.79  E-value=9.8e-20  Score=109.34  Aligned_cols=84  Identities=27%  Similarity=0.530  Sum_probs=78.0

Q ss_pred             CCCCCCcccccCcccc--cccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCCCcee
Q psy4421          68 GEKPFSYMYENQQYCI--HCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYK  145 (167)
Q Consensus        68 ~~~~~~~~~~~~~~c~--~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~  145 (167)
                      |+++|.        |+  .|++. |.....|..|+.+       +.++++|.|+.|++.|.....|..|+++|.++++|.
T Consensus         1 ~~k~~~--------C~~~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   64 (90)
T 1a1h_A            1 MERPYA--------CPVESCDRR-FSQSGSLTRHIRI-------HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA   64 (90)
T ss_dssp             --CCEE--------CCSSSCCCE-ESSHHHHHHHHHH-------HHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEE
T ss_pred             CCCceE--------CCCCCCCCc-cCCHHHHHHHHHH-------hCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCcc
Confidence            357787        87  69999 9999999999999       888999999999999999999999999999999999


Q ss_pred             CCCCcccccCchhHHHHhhhcC
Q psy4421         146 CSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       146 C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      |..|++.|...+.|..|+++|+
T Consensus        65 C~~C~~~f~~~~~l~~H~~~H~   86 (90)
T 1a1h_A           65 CDICGRKFARSDERKRHTKIHL   86 (90)
T ss_dssp             CTTTCCEESSHHHHHHHHGGGG
T ss_pred             CCCCCchhCCHHHHHHHHHHhc
Confidence            9999999999999999999874

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=6.1e-20  Score=115.27  Aligned_cols=96  Identities=13%  Similarity=0.066  Sum_probs=68.7

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHH--hhCCCCC-CcccccCccccccccccc--CChHHHHHHHhhcCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILK--HTGEKPF-SYMYENQQYCIHCNSYIS--SDIKDLIEHCKSCSHMT  107 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~--h~~~~~~-~~~~~~~~~c~~c~~~~~--~~~~~l~~h~~~~~~~~  107 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++  |.+++++ .        |..|++. |  .....|..|+.+     
T Consensus         9 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~--------C~~C~~~-f~f~~~~~l~~H~~~-----   74 (115)
T 2dmi_A            9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHET--------DNNNPKR-WSKPRKRSLLEMEGK-----   74 (115)
T ss_dssp             CCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCC--------CCCCCSC-CSSCCCCCCCCCCCS-----
T ss_pred             hheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCcc--------CCCCCcc-cccccHHHHHHHhhc-----
Confidence            899999999999999999999999999999998  5554443 3        6667666 4  555556666555     


Q ss_pred             CCCCCCCcccCCCCCccccCchhHHHHHhhhCCCCce
Q psy4421         108 RPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPY  144 (167)
Q Consensus       108 ~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  144 (167)
                        +.++++|.|++|++.|.....|..|++.|......
T Consensus        75 --H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~  109 (115)
T 2dmi_A           75 --EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV  109 (115)
T ss_dssp             --CCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCS
T ss_pred             --cCCCcceECCCCCCccCCHHHHHHHHHHhCCcccC
Confidence              56666666666666666666666666655544433

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.78  E-value=1.1e-19  Score=107.19  Aligned_cols=78  Identities=22%  Similarity=0.396  Sum_probs=74.5

Q ss_pred             cccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHH
Q psy4421          82 CIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKS  161 (167)
Q Consensus        82 c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  161 (167)
                      |..|++. |.....|..|+.+       +.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.+.++|..
T Consensus         4 C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   75 (82)
T 2kmk_A            4 CKICGKS-FKRSSTLSTHLLI-------HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLIT   75 (82)
T ss_dssp             CSSSCCE-ESSHHHHHHHHHH-------HHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHH
T ss_pred             CCCCccc-ccCchhHHHHHHH-------cCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHH
Confidence            8999999 8999999999998       8888999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcC
Q psy4421         162 HMKSNH  167 (167)
Q Consensus       162 H~~~hh  167 (167)
                      |+++|+
T Consensus        76 H~~~H~   81 (82)
T 2kmk_A           76 HSRKHT   81 (82)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.78  E-value=2.6e-19  Score=110.75  Aligned_cols=92  Identities=22%  Similarity=0.318  Sum_probs=86.5

Q ss_pred             CcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCccc
Q psy4421           3 ESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYC   82 (167)
Q Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c   82 (167)
                      .++++|.|..|++.|.....|.        .|++.|.++++|.|..|++.|.....|..|+++|.++++|.        |
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~--------C   76 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLL--------IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK--------C   76 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHH--------HHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTS--------C
T ss_pred             CCCcCeECCCCCCccCCHHHHH--------HHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeE--------C
Confidence            4678999999999999999999        88888999999999999999999999999999999999999        9


Q ss_pred             ccccccccCChHHHHHHHhhcCCCCCCCCCCCcccC
Q psy4421          83 IHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVC  118 (167)
Q Consensus        83 ~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C  118 (167)
                      ..|++. |.....|..|+.+       +.++++|.+
T Consensus        77 ~~C~~~-f~~~~~L~~H~~~-------H~~~~~~~~  104 (106)
T 2ee8_A           77 QECGKG-FCQSRTLAVHKTL-------HMQTSSPTA  104 (106)
T ss_dssp             SSSCCC-CSSHHHHHHHHHH-------TTSCCCCCC
T ss_pred             CCcCCc-ccCHHHHHHHHHH-------hCCCCCCcC
Confidence            999999 9999999999999       888888764

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.78  E-value=4.2e-19  Score=104.68  Aligned_cols=82  Identities=24%  Similarity=0.416  Sum_probs=65.8

Q ss_pred             ceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCC
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACE  122 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~  122 (167)
                      ||.|..|++.|.....|..|+++|.++++|.        |+.|++. |.....|..|+..       +.++++|.|+.|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~--------C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~C~   64 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYP--------CQYCGKR-FHQKSDMKKHTFI-------HTGEKPHKCQVCG   64 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEE--------CSSSCCE-ESSHHHHHHHHHH-------HHTCCCEECTTTS
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCee--------CCcCChh-hCCHHHHHHHHHH-------hcCCCCCcCCCcc
Confidence            4778888888888888888888888877887        8888888 7778888888877       7777788888888


Q ss_pred             ccccCchhHHHHHhhhCC
Q psy4421         123 YNTYMSGNIKTHLRLHLD  140 (167)
Q Consensus       123 ~~~~~~~~l~~H~~~h~~  140 (167)
                      +.|.....|..|+++|+|
T Consensus        65 ~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           65 KAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CEESSHHHHHHHHHHHC-
T ss_pred             hhhCChHHHHHHHHhhCC
Confidence            888888888888888764

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=6.4e-19  Score=106.82  Aligned_cols=83  Identities=25%  Similarity=0.456  Sum_probs=74.0

Q ss_pred             hCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCC--Cce
Q psy4421          67 TGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDD--KPY  144 (167)
Q Consensus        67 ~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~--~~~  144 (167)
                      .++++|.        |..|++. |.....|..|+.+       +.++++|.|++|++.|.....|..|++.|.++  ++|
T Consensus         3 ~~~~~~~--------C~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~   66 (95)
T 2yt9_A            3 SGSSGVA--------CEICGKI-FRDVYHLNRHKLS-------HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY   66 (95)
T ss_dssp             CCCSCEE--------CSSSCCE-ESSSHHHHHHHHH-------SCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSB
T ss_pred             CCCCCeE--------CCCCCCc-cCChHHHHHHHHh-------cCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCce
Confidence            3566777        8888888 8888888888888       88889999999999999999999999999987  899


Q ss_pred             eCCCCcccccCchhHHHHhhh
Q psy4421         145 KCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       145 ~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      .|..|++.|.....|..|++.
T Consensus        67 ~C~~C~~~f~~~~~L~~H~~~   87 (95)
T 2yt9_A           67 ICQSCGKGFSRPDHLNGHIKQ   87 (95)
T ss_dssp             CCSSSCCCBSSHHHHHHHHHH
T ss_pred             ECCCccchhCCHHHHHHHHHH
Confidence            999999999999999999863

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=9.6e-21  Score=118.96  Aligned_cols=98  Identities=15%  Similarity=0.097  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCc-ccCCCCCccc--cCchhHH
Q psy4421          56 SNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFK-FVCYACEYNT--YMSGNIK  132 (167)
Q Consensus        56 ~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~-~~C~~C~~~~--~~~~~l~  132 (167)
                      ...|..|+++|.++++|.        |..|++. |.....|..|+.. .    .+.+.++ +.|++|++.|  .....|.
T Consensus         4 ~~~l~~H~~~H~~~~~~~--------C~~C~k~-f~~~~~L~~H~~~-~----~h~~~~~~~~C~~C~~~f~f~~~~~l~   69 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFR--------CKDCSAA-YDTLVELTVHMNE-T----GHYRDDNHETDNNNPKRWSKPRKRSLL   69 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEE--------BSSSSCE-ESSHHHHHHHHHH-T----CCCBCSCCCCCCCCCSCCSSCCCCCCC
T ss_pred             chhhhhheeeeCCCCCEE--------CCccCch-hcCHHHHHHHHHH-h----CccccCCCccCCCCCcccccccHHHHH
Confidence            345777888999999999        9999999 9999999999986 1    1233444 5599999998  8999999


Q ss_pred             HHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         133 THLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       133 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      .|+++|.+++||.|.+|++.|...+.|..|+++||
T Consensus        70 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh  104 (115)
T 2dmi_A           70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK  104 (115)
T ss_dssp             CCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTT
T ss_pred             HHhhccCCCcceECCCCCCccCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.76  E-value=7.3e-20  Score=101.47  Aligned_cols=59  Identities=15%  Similarity=0.215  Sum_probs=55.5

Q ss_pred             cCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCC
Q psy4421           4 SLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      +||||.|.+|+++|...+.|.        .|+++|.+++||.|++||+.|...+.|.+|+++|+|++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~--------~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLS--------RHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHH--------HHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHH--------HHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            589999999999999999999        99999999999999999999999999999999999874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=2.8e-18  Score=103.96  Aligned_cols=59  Identities=15%  Similarity=0.225  Sum_probs=32.4

Q ss_pred             CcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCC
Q psy4421           3 ESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      +++++|.|..|++.|.....|.        .|++.|.++++|.|..|++.|.....|..|++.|.++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLN--------RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHH--------HHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred             CCCCCeECCCCCCccCChHHHH--------HHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            3455555555555555555555        5555555555555555555555555555555555543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=6.5e-19  Score=109.20  Aligned_cols=93  Identities=17%  Similarity=0.165  Sum_probs=84.6

Q ss_pred             CCCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCc
Q psy4421           1 VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQ   80 (167)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~   80 (167)
                      +++++++|.|..|++.|.....|.        .|++.|  .++|.|..|++.|.....|..|++ |.++++|.       
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~--------~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~-------   71 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQG--------SHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLT-------   71 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHH--------HHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGE-------
T ss_pred             ccCCCcCeECCCCCCccCCHHHHH--------HHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCcc-------
Confidence            478899999999999999999999        777776  468999999999999999999996 99999999       


Q ss_pred             ccccccccccCChHHHHHHHh-hcCCCCCCCCCCCcccCCC
Q psy4421          81 YCIHCNSYISSDIKDLIEHCK-SCSHMTRPDAFHFKFVCYA  120 (167)
Q Consensus        81 ~c~~c~~~~~~~~~~l~~h~~-~~~~~~~~~~~~~~~~C~~  120 (167)
                       |..|++. |.....|..|+. +       +.++++|.+..
T Consensus        72 -C~~C~~~-f~~~~~L~~H~~~~-------H~~~~~~~~~~  103 (107)
T 1wjp_A           72 -CLECMRT-FKSSFSIWRHQVEV-------HNQNNMAPTSG  103 (107)
T ss_dssp             -EGGGTEE-CSSHHHHHHHHHHT-------SCCCCCCCCCC
T ss_pred             -Cccccch-hCCHHHHHHHHHHH-------cCCCCCCCCCC
Confidence             9999999 999999999997 7       88888888753

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=5e-18  Score=105.62  Aligned_cols=84  Identities=20%  Similarity=0.419  Sum_probs=54.9

Q ss_pred             hhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCCCcee
Q psy4421          66 HTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYK  145 (167)
Q Consensus        66 h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~  145 (167)
                      |+++++|.        | .|++. |.....|..|+..       +.++++|.|++|++.|.....|..|+++|.++++|.
T Consensus         5 h~~~k~~~--------C-~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   67 (110)
T 2csh_A            5 SSGDKLYP--------C-QCGKS-FTHKSQRDRHMSM-------HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE   67 (110)
T ss_dssp             CCCCCCEE--------C-TTSCE-ESSHHHHHHHHHH-------HSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEE
T ss_pred             CCCCCCEe--------c-cCCCc-cCCHHHHHHHHHH-------cCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCee
Confidence            45556666        6 66666 6666666666666       566666666666666666666666666666666666


Q ss_pred             CCCCcccccCchhHHHHhhhc
Q psy4421         146 CSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       146 C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |..|++.|.....|..|+++|
T Consensus        68 C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           68 CNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             CSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCCcchhcCHHHHHHHHHHc
Confidence            666666666666666666654

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.73  E-value=6.3e-18  Score=101.12  Aligned_cols=77  Identities=23%  Similarity=0.510  Sum_probs=72.6

Q ss_pred             ccc--ccccccCChHHHHHHHhhcCCCCCCCCCCCcccCC--CCCccccCchhHHHHHhhhCCCCceeCCCCcccccCch
Q psy4421          82 CIH--CNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCY--ACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNV  157 (167)
Q Consensus        82 c~~--c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  157 (167)
                      |..  |++. |.....|..|+.+       +.++++|.|+  .|++.|.....|..|++.|.++++|.|+.|++.|...+
T Consensus         8 C~~~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   79 (89)
T 2wbs_A            8 CDYAGCGKT-YTKSSHLKAHLRT-------HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD   79 (89)
T ss_dssp             CCSTTTCCE-ESSHHHHHHHHTT-------SCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHH
T ss_pred             CCCCCCCCc-CCCHHHHHHHHHh-------cCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHH
Confidence            877  9998 8889999999988       8889999997  69999999999999999999999999999999999999


Q ss_pred             hHHHHhhhc
Q psy4421         158 HLKSHMKSN  166 (167)
Q Consensus       158 ~l~~H~~~h  166 (167)
                      +|..|+++|
T Consensus        80 ~l~~H~~~H   88 (89)
T 2wbs_A           80 HLALHMKRH   88 (89)
T ss_dssp             HHHHHGGGG
T ss_pred             HHHHHHHhh
Confidence            999999987

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.71  E-value=2e-17  Score=101.07  Aligned_cols=78  Identities=26%  Similarity=0.555  Sum_probs=71.9

Q ss_pred             ccc--ccccccCChHHHHHHHhhcCCCCCCCCCCCcccCC--CCCccccCchhHHHHHhhhCCCCceeCCCCcccccCch
Q psy4421          82 CIH--CNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCY--ACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNV  157 (167)
Q Consensus        82 c~~--c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  157 (167)
                      |..  |++. |.....|..|+..       +.++++|.|+  .|++.|.....|..|+++|.++++|.|..|++.|....
T Consensus        18 C~~~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   89 (100)
T 2ebt_A           18 CDYPGCTKV-YTKSSHLKAHLRT-------HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD   89 (100)
T ss_dssp             CCSSSCCCE-ESCHHHHHHHHHH-------HSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHH
T ss_pred             cCCCCCCCc-ccCHHHHHHHHHH-------hCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHH
Confidence            665  8888 8888888888888       8888999996  69999999999999999999999999999999999999


Q ss_pred             hHHHHhhhcC
Q psy4421         158 HLKSHMKSNH  167 (167)
Q Consensus       158 ~l~~H~~~hh  167 (167)
                      .|..|+++|+
T Consensus        90 ~l~~H~~~H~   99 (100)
T 2ebt_A           90 HLALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999874

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.69  E-value=8.7e-17  Score=98.15  Aligned_cols=85  Identities=26%  Similarity=0.460  Sum_probs=74.1

Q ss_pred             CccceecCc--cCccccChHHHHHHHHHhhCCCCCCcccccCcccc--cccccccCChHHHHHHHhhcCCCCCCCCCCCc
Q psy4421          40 FKYKYGCYR--CSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCI--HCNSYISSDIKDLIEHCKSCSHMTRPDAFHFK  115 (167)
Q Consensus        40 ~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~--~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~  115 (167)
                      ..++|.|..  |++.|.....|..|+++|.++++|.        |+  .|++. |.....|..|+.+       +.++++
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~--------C~~~~C~~~-f~~~~~l~~H~~~-------h~~~~~   75 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYK--------CTWEGCDWR-FARSDELTRHYRK-------HTGAKP   75 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEE--------CCSSSCCCE-ESSHHHHHHHHHH-------HTSCCS
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCee--------CCCCCCCCc-cCCHHHHHHHHHH-------hCCCCC
Confidence            456788986  9999999999999999999888888        75  59988 8888999999988       888889


Q ss_pred             ccCCCCCccccCchhHHHHHhhhCC
Q psy4421         116 FVCYACEYNTYMSGNIKTHLRLHLD  140 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~~h~~  140 (167)
                      |.|++|++.|.....|..|+++|.+
T Consensus        76 ~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           76 FQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             eECCCCcCccCCHHHHHHHHHHhCC
Confidence            9999999999999999999998864

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.66  E-value=7.6e-17  Score=88.45  Aligned_cols=56  Identities=30%  Similarity=0.562  Sum_probs=51.0

Q ss_pred             CCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         112 FHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       112 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++++|.|++|++.|.....|..|+++|.+++||.|..|++.|...+.|..|+++||
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            35789999999999999999999999999999999999999999999999999987

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.66  E-value=8e-17  Score=95.34  Aligned_cols=75  Identities=20%  Similarity=0.441  Sum_probs=71.2

Q ss_pred             c--ccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCC--CCccccCchhHHHHHhhhCCCCceeCCC---Cccccc
Q psy4421          82 C--IHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYA--CEYNTYMSGNIKTHLRLHLDDKPYKCSL---CNYECR  154 (167)
Q Consensus        82 c--~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~  154 (167)
                      |  +.|++. |.....|..|+.+       +.++++|.|+.  |++.|.....|..|+++|.+   |.|..   |++.|.
T Consensus         4 C~~~~C~~~-f~~~~~l~~H~~~-------h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~   72 (85)
T 2j7j_A            4 CHFENCGKA-FKKHNQLKVHQFS-------HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGK   72 (85)
T ss_dssp             CCSTTCCCE-ESSHHHHHHHHHH-------HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEES
T ss_pred             CCCCCCCcc-cCCHHHHHHHHHH-------hCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccC
Confidence            8  889999 8999999999998       88899999988  99999999999999999987   99999   999999


Q ss_pred             CchhHHHHhhhcC
Q psy4421         155 QNVHLKSHMKSNH  167 (167)
Q Consensus       155 ~~~~l~~H~~~hh  167 (167)
                      ..++|..|+++||
T Consensus        73 ~~~~l~~H~~~hh   85 (85)
T 2j7j_A           73 TWTLYLKHVAECH   85 (85)
T ss_dssp             SHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999987

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.65  E-value=2.7e-16  Score=93.91  Aligned_cols=82  Identities=30%  Similarity=0.526  Sum_probs=75.6

Q ss_pred             cCCcccccc--cccccCchHHHHHHhhhhhccccCCCCCccceecC--ccCccccChHHHHHHHHHhhCCCCCCcccccC
Q psy4421           4 SLNINQCVH--CHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCY--RCSYFTYESNNLKKHILKHTGEKPFSYMYENQ   79 (167)
Q Consensus         4 ~~~~~~C~~--C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~   79 (167)
                      ..++|.|..  |++.|.....|.        .|++.|.++++|.|+  .|++.|.....|..|+++|.++++|.      
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~------   67 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLK--------AHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ------   67 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHH--------HHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEE------
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHH--------HHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCcc------
Confidence            357899999  999999999999        999999999999997  59999999999999999999999999      


Q ss_pred             cccccccccccCChHHHHHHHhh
Q psy4421          80 QYCIHCNSYISSDIKDLIEHCKS  102 (167)
Q Consensus        80 ~~c~~c~~~~~~~~~~l~~h~~~  102 (167)
                        |+.|++. |.....|..|+.+
T Consensus        68 --C~~C~~~-f~~~~~l~~H~~~   87 (89)
T 2wbs_A           68 --CQKCDRA-FSRSDHLALHMKR   87 (89)
T ss_dssp             --CSSSSCE-ESSHHHHHHHGGG
T ss_pred             --CCCCCcc-cCCHHHHHHHHHh
Confidence              9999999 8888888888765

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.65  E-value=4e-18  Score=102.01  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=71.9

Q ss_pred             cccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHH
Q psy4421          82 CIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKS  161 (167)
Q Consensus        82 c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  161 (167)
                      |..|++. |.....|..|+.+       +.++++|.|++|++.|.....|..|++.|++ .+|.|..|++.|.....|..
T Consensus         6 C~~C~k~-f~~~~~L~~H~~~-------H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~   76 (88)
T 1llm_C            6 CRICMRN-FSRSDHLTTHIRT-------HTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLEN   76 (88)
T ss_dssp             CTTTCCE-ESCHHHHHHHHHH-------HHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCc-cCCHHHHHHHHHH-------cCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHH
Confidence            9999999 8999999999998       8899999999999999999999999999985 78999999999999999999


Q ss_pred             HhhhcC
Q psy4421         162 HMKSNH  167 (167)
Q Consensus       162 H~~~hh  167 (167)
                      |++..|
T Consensus        77 H~~~~h   82 (88)
T 1llm_C           77 EVARLK   82 (88)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.64  E-value=1.4e-16  Score=92.10  Aligned_cols=63  Identities=25%  Similarity=0.405  Sum_probs=59.3

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCC
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPF   72 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~   72 (167)
                      +.++++|.|..|++.|.....|.        .|++.|.++++|.|..|++.|.....|.+|+++|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~--------~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLA--------SHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHH--------HHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHH--------HHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            57889999999999999999999        8889999999999999999999999999999999999886

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.1e-16  Score=92.06  Aligned_cols=64  Identities=23%  Similarity=0.370  Sum_probs=61.3

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      +.+++||.|..|++.|.....|.        .|++.|.++++|.|.+|++.|.....|.+|+++|++++||.
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~   76 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLS--------KHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS   76 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHH--------HHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHH--------HHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            46789999999999999999999        99999999999999999999999999999999999999998

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.6e-16  Score=92.00  Aligned_cols=71  Identities=13%  Similarity=0.261  Sum_probs=67.0

Q ss_pred             CCcCCcccccc--cccccCchHHHHHHhhhhhccccC-CCCCccceecCc--cCccccChHHHHHHHHHhhCCCCCCccc
Q psy4421           2 QESLNINQCVH--CHLTLTKSTEVIVKHAQTCISMVR-PDSFKYKYGCYR--CSYFTYESNNLKKHILKHTGEKPFSYMY   76 (167)
Q Consensus         2 ~~~~~~~~C~~--C~~~f~~~~~l~~~~~~~~~~h~~-~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~~~~   76 (167)
                      .+++++|.|..  |++.|....+|.        .|++ .|.++++|.|..  |++.|.....|..|+++|+++++|.   
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~--------~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~---   70 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLN--------HHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI---   70 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHH--------HHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCS---
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHH--------HHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCee---
Confidence            46889999997  999999999999        8988 799999999999  9999999999999999999999999   


Q ss_pred             ccCccccccccc
Q psy4421          77 ENQQYCIHCNSY   88 (167)
Q Consensus        77 ~~~~~c~~c~~~   88 (167)
                           |..|++.
T Consensus        71 -----C~~C~k~   77 (79)
T 2dlk_A           71 -----CEFSGPS   77 (79)
T ss_dssp             -----CCSSSCC
T ss_pred             -----CCCCCCC
Confidence                 9999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.7e-16  Score=92.75  Aligned_cols=74  Identities=22%  Similarity=0.385  Sum_probs=63.4

Q ss_pred             hCCCCCCcccccCcccccccccccCChHHHHHHHh-hcCCCCCCCCCCCcccCCC--CCccccCchhHHHHHhhhCCCCc
Q psy4421          67 TGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCK-SCSHMTRPDAFHFKFVCYA--CEYNTYMSGNIKTHLRLHLDDKP  143 (167)
Q Consensus        67 ~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~-~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~  143 (167)
                      +++++|.|.      |+.|++. |.....|..|+. .       +.++++|.|+.  |++.|.....|..|+++|.++++
T Consensus         3 ~~~~~~~C~------~~~C~~~-f~~~~~L~~H~~~~-------H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~   68 (79)
T 2dlk_A            3 SGSSGMPCD------FPGCGRI-FSNRQYLNHHKKYQ-------HIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD   68 (79)
T ss_dssp             SCCSSEECS------STTTCCE-ESSHHHHHHHHHHG-------GGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             CCCCCccCC------CCCCcCc-cCCHHHHHHHHHHH-------hCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC
Confidence            356677722      3348888 888888888887 6       77889999998  99999999999999999999999


Q ss_pred             eeCCCCccccc
Q psy4421         144 YKCSLCNYECR  154 (167)
Q Consensus       144 ~~C~~C~~~f~  154 (167)
                      |.|..|+++|.
T Consensus        69 ~~C~~C~k~F~   79 (79)
T 2dlk_A           69 YICEFSGPSSG   79 (79)
T ss_dssp             CSCCSSSCCCC
T ss_pred             eeCCCCCCCCC
Confidence            99999999985

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.64  E-value=4e-16  Score=92.35  Aligned_cols=58  Identities=22%  Similarity=0.361  Sum_probs=53.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ....++|.|++|++.|.....|..|+++|++++||.|.+|+++|...+.|.+|+++.|
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            5567789999999999999999999999999999999999999999999999986543

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.63  E-value=1.1e-17  Score=106.94  Aligned_cols=56  Identities=23%  Similarity=0.392  Sum_probs=39.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      +.++++|.|++|++.|.....|..|+++|  ++||.|..|++.|...+.|..|+++||
T Consensus        69 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           69 SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             HHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTT
T ss_pred             hCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHC
Confidence            45566677777777777777777777776  667777777777777777777777664

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=4.5e-16  Score=88.99  Aligned_cols=58  Identities=29%  Similarity=0.679  Sum_probs=55.4

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++||
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   61 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH   61 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHh
Confidence            6778999999999999999999999999999999999999999999999999999874

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=5.6e-16  Score=89.09  Aligned_cols=58  Identities=28%  Similarity=0.447  Sum_probs=55.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|+
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~   66 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT   66 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcC
Confidence            7888999999999999999999999999999999999999999999999999999873

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.5e-16  Score=94.44  Aligned_cols=82  Identities=15%  Similarity=0.137  Sum_probs=61.1

Q ss_pred             ccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCC
Q psy4421          32 ISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDA  111 (167)
Q Consensus        32 ~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~  111 (167)
                      ..|+++|.++++|.|..|++.|.....|..|++.+.+..                                        .
T Consensus         4 ~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~----------------------------------------~   43 (86)
T 1x6h_A            4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN----------------------------------------F   43 (86)
T ss_dssp             TCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS----------------------------------------C
T ss_pred             ccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc----------------------------------------C
Confidence            378888888899999999999999999999988766531                                        0


Q ss_pred             CCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccc
Q psy4421         112 FHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYEC  153 (167)
Q Consensus       112 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f  153 (167)
                      .+++|.|++|++.|.....|..|+++|.+++++.|..|+..|
T Consensus        44 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           44 VPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            123566677777777777777777777777777777777654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=8.4e-16  Score=87.83  Aligned_cols=64  Identities=22%  Similarity=0.362  Sum_probs=60.5

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      +++++||.|..|++.|.....|.        .|++.|.++++|.|.+|++.|.....|..|+++|.+++|..
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~--------~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALR--------IHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHH--------HHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCeECCCCCcccCCHHHHH--------HHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            67899999999999999999999        99999999999999999999999999999999999998754

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=88.12  Aligned_cols=58  Identities=24%  Similarity=0.603  Sum_probs=55.4

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ..++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|...+.|.+|+++|+
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   69 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS   69 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcC
Confidence            6778899999999999999999999999999999999999999999999999999874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.60  E-value=1.3e-15  Score=83.39  Aligned_cols=53  Identities=34%  Similarity=0.752  Sum_probs=50.8

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ||.|+.|++.|.....|..|+++|.++++|.|..|++.|...+.|..|+++|+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999999999999999999875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=3.8e-16  Score=88.19  Aligned_cols=58  Identities=22%  Similarity=0.376  Sum_probs=54.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhh-h-CCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRL-H-LDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      +.++++|.|+.|++.|.....|..|++. | .++++|.|+.|++.|...+.|..|++++|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            6788999999999999999999999998 7 58999999999999999999999999886

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=2.8e-15  Score=87.22  Aligned_cols=58  Identities=28%  Similarity=0.520  Sum_probs=54.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ..++++|.|++|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|+
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~   70 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT   70 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhC
Confidence            6678899999999999999999999999999999999999999999999999999875

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=6.5e-17  Score=96.66  Aligned_cols=80  Identities=21%  Similarity=0.298  Sum_probs=52.9

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYAC  121 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C  121 (167)
                      ++|.|..|++.|.....|..|+++|.++++|.        |+.|++. |.....|..|+..       +.+ .+|.|+.|
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~--------C~~C~k~-f~~~~~L~~H~~~-------h~~-~~~~c~~C   64 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA--------CDICGRK-FARSDERKRHRDI-------QHI-LPILEDKV   64 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEE--------CTTTCCE-ESSHHHHHHHHHH-------HTH-HHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCcc--------CCCCCCc-cCCHHHHHHHHHH-------hCC-CcchHHHH
Confidence            45666666666666666666666666666666        6666666 6666666666665       332 56677777


Q ss_pred             CccccCchhHHHHHhhh
Q psy4421         122 EYNTYMSGNIKTHLRLH  138 (167)
Q Consensus       122 ~~~~~~~~~l~~H~~~h  138 (167)
                      ++.|.....|..|++..
T Consensus        65 ~~~f~~~~~L~~H~~~~   81 (88)
T 1llm_C           65 EELLSKNYHLENEVARL   81 (88)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHH
Confidence            77777777777776543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=2.6e-16  Score=96.32  Aligned_cols=64  Identities=20%  Similarity=0.414  Sum_probs=59.4

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccC-CC---CCccceecCccCccccChHHHHHH-HHHhhCCCCCC
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVR-PD---SFKYKYGCYRCSYFTYESNNLKKH-ILKHTGEKPFS   73 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~-~~---~~~~~~~C~~C~~~~~~~~~l~~H-~~~h~~~~~~~   73 (167)
                      .+|++||.|..|++.|...+.|.        .|++ .|   .++++|.|..|++.|.....|..| +++|++++||.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~--------~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~   81 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFT--------FHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFK   81 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHH--------HHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHH--------HHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCee
Confidence            36899999999999999999999        8886 47   568899999999999999999999 79999999999

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.59  E-value=1.7e-15  Score=89.55  Aligned_cols=77  Identities=27%  Similarity=0.405  Sum_probs=53.0

Q ss_pred             ceec--CccCccccChHHHHHHHHHhhCCCCCCcccccCccccc--ccccccCChHHHHHHHhhcCCCCCCCCCCCcccC
Q psy4421          43 KYGC--YRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIH--CNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVC  118 (167)
Q Consensus        43 ~~~C--~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~--c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C  118 (167)
                      ||.|  +.|++.|.....|..|+++|.++++|.        |+.  |++. |.....|..|+.+       +.+   |.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~--------C~~~~C~~~-f~~~~~l~~H~~~-------h~~---~~C   61 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE--------CPHEGCDKR-FSLPSRLKRHEKV-------HAG---YPC   61 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEE--------CCSTTCCCE-ESSHHHHHHHHHH-------HHS---EEC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCee--------CCCCCCcCc-cCCHHHHHHHHHH-------hCC---CCC
Confidence            4666  667777777777777777777766766        665  7776 6666777777666       544   667


Q ss_pred             CC---CCccccCchhHHHHHhhh
Q psy4421         119 YA---CEYNTYMSGNIKTHLRLH  138 (167)
Q Consensus       119 ~~---C~~~~~~~~~l~~H~~~h  138 (167)
                      +.   |++.|.....|..|+++|
T Consensus        62 ~~~~~C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           62 KKDDSCSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             CSCSSCCCEESSHHHHHHHHHHC
T ss_pred             CCCCCCCCccCCHHHHHHHHHhc
Confidence            76   777777777777777665

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=4.9e-15  Score=87.80  Aligned_cols=72  Identities=13%  Similarity=0.189  Sum_probs=64.4

Q ss_pred             CCCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCc----cceecCccCccccChHHHHHHHHHhhCCCCCCccc
Q psy4421           1 VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFK----YKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMY   76 (167)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~----~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~   76 (167)
                      +|++++||.|..|++.|.....|.        .|++.+...    ++|.|..|++.|.....|..|+++|.+++++.   
T Consensus         9 ~H~~~k~~~C~~C~~~f~~~~~l~--------~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~---   77 (86)
T 1x6h_A            9 THTGEKPYACSHCDKTFRQKQLLD--------MHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE---   77 (86)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHH--------HHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCC---
T ss_pred             eecCCCCCcCCCCCCccCCHHHHH--------HHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcc---
Confidence            578999999999999999999999        887654443    78999999999999999999999999999999   


Q ss_pred             ccCccccccccc
Q psy4421          77 ENQQYCIHCNSY   88 (167)
Q Consensus        77 ~~~~~c~~c~~~   88 (167)
                           |..|+..
T Consensus        78 -----~~~~~~~   84 (86)
T 1x6h_A           78 -----GENSGPS   84 (86)
T ss_dssp             -----CCCCCCC
T ss_pred             -----cCCCCCC
Confidence                 8888764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=8.8e-16  Score=88.25  Aligned_cols=62  Identities=19%  Similarity=0.352  Sum_probs=55.4

Q ss_pred             CCCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCC
Q psy4421           1 VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      +|++++||.|..|++.|.....|.        .|++.|.++++|.|.+|++.|.....|.+|+++|+++.
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~--------~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILV--------QHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHH--------HHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             ccCCCCCccCCCCCCccCCHHHHH--------HHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            578889999999999999999999        88888888899999999999999999999999988764

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.59  E-value=3.6e-16  Score=99.86  Aligned_cols=113  Identities=13%  Similarity=0.059  Sum_probs=88.4

Q ss_pred             CCCcCCcccccccccccCc--hHHHHHHhhhhhccccCCCCCccceecCccCcccc------ChHHHHHHHHHhhCCCCC
Q psy4421           1 VQESLNINQCVHCHLTLTK--STEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTY------ESNNLKKHILKHTGEKPF   72 (167)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~--~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~------~~~~l~~H~~~h~~~~~~   72 (167)
                      +++++++|.|...+.....  ...+.        . .......+.+.|+.|++.|.      ....|..|+ .|++++||
T Consensus         6 ~~~~~k~~~~~~k~~~~~~s~ee~~~--------~-~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~   75 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIHVTLEELKR--------Y-HQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQF   75 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEECCHHHHHH--------H-TTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSE
T ss_pred             hcccccccccccCCeeeeecHHhhhc--------c-ccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCe
Confidence            4789999988765554322  22212        1 22344556788998887766      445666666 68889999


Q ss_pred             CcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCC
Q psy4421          73 SYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus        73 ~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      .        |..|++. |.....|..|+.+       +  +++|.|++|++.|.....|..|++.|+|.
T Consensus        76 ~--------C~~C~k~-f~~~~~l~~H~~~-------H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           76 V--------CPLCLMP-FSSSVSLKQHIRY-------T--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             E--------CTTTCCE-ESSHHHHHHHHHH-------T--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             E--------CCCCCcc-cCCHhHHHHHHHH-------C--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            9        9999999 9999999999998       7  78999999999999999999999999875

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.9e-16  Score=96.56  Aligned_cols=67  Identities=18%  Similarity=0.274  Sum_probs=61.7

Q ss_pred             HHHHHHHhhcCCCCCCCCCCCcccCCCCCcccc-CchhHHHHHhhhCC-CCceeCCCCcccccCchhHHHHhhhcC
Q psy4421          94 KDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTY-MSGNIKTHLRLHLD-DKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus        94 ~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ..+..|+.+       +.++++|.|++|++.|. ....|..|+++|.+ +++|.|.+|++.|.+...|..|+++||
T Consensus        10 ~~~~~h~~~-------h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A           10 GPEEQWQRA-------IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             CSCSHHHHT-------TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHS
T ss_pred             CcHHHHHHH-------hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHc
Confidence            345677777       88999999999999999 99999999999998 999999999999999999999999875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.2e-15  Score=88.85  Aligned_cols=58  Identities=22%  Similarity=0.533  Sum_probs=54.4

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHh-hhCCC-CceeCCCCcccccCchhHHHHhhhcC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLR-LHLDD-KPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      +.++++|.|++|++.|.....|..|++ .|.++ ++|.|..|++.|.....|..|++++|
T Consensus        10 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A           10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             cCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            889999999999999999999999987 67765 89999999999999999999999876

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.3e-15  Score=92.42  Aligned_cols=69  Identities=14%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             cCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccc-cCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHH-hhhc
Q psy4421          90 SSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNT-YMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSH-MKSN  166 (167)
Q Consensus        90 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h  166 (167)
                      +.....+..|...       +.++++|.|++|++.| ....+|..|+++| ++++|.|.+|++.|...+.|..| +++|
T Consensus        16 ~~~~~~~~~~~~~-------~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           16 YAAGSLEEQWYLE-------IVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             SCTTCHHHHHHHH-------HHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHH-------hcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            4556667778777       7788999999999999 9999999999999 99999999999999999999999 7776

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.9e-15  Score=88.11  Aligned_cols=58  Identities=16%  Similarity=0.381  Sum_probs=54.3

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCC---CCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLD---DKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      +.++++|.|++|++.|.....|..|+++|.+   +++|.|..|++.|...+.|..|++.+|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   62 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH   62 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhC
Confidence            6788999999999999999999999999986   899999999999999999999997655

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=5.7e-15  Score=81.71  Aligned_cols=53  Identities=34%  Similarity=0.610  Sum_probs=49.7

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHh-hhc
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM-KSN  166 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h  166 (167)
                      ++|.|+.|++.|.....|..|+++|.++++|.|..|++.|.+.+.|..|+ ++|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H   54 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH   54 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHc
Confidence            47999999999999999999999999999999999999999999999997 454

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.55  E-value=3e-15  Score=88.60  Aligned_cols=60  Identities=22%  Similarity=0.308  Sum_probs=39.2

Q ss_pred             CCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHH-HHhhCC
Q psy4421           2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHI-LKHTGE   69 (167)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~-~~h~~~   69 (167)
                      +.+.++|.|++|++.|.....|.        .|+++|.+++||.|.+|++.|.....|.+|+ +.|++|
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~--------~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQE--------RHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHH--------HHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHh--------hhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            34556666777777776666666        6666666666677777777776666676665 345554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=1.1e-14  Score=83.70  Aligned_cols=59  Identities=22%  Similarity=0.567  Sum_probs=55.4

Q ss_pred             CCCCCCcccCC--CCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         109 PDAFHFKFVCY--ACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       109 ~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      .+.++++|.|+  .|++.|.....|..|+++|.++++|.|..|++.|...+.|.+|+++|.
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            36788999997  599999999999999999999999999999999999999999999874

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=7.6e-15  Score=89.79  Aligned_cols=40  Identities=20%  Similarity=0.541  Sum_probs=31.5

Q ss_pred             CCCCcccCCCCCccccCchhHHHH-HhhhCCCCceeCCCCc
Q psy4421         111 AFHFKFVCYACEYNTYMSGNIKTH-LRLHLDDKPYKCSLCN  150 (167)
Q Consensus       111 ~~~~~~~C~~C~~~~~~~~~l~~H-~~~h~~~~~~~C~~C~  150 (167)
                      .++++|.|++|++.|.....|..| +++|.|++||.|..+.
T Consensus        46 ~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           46 VLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            345678888888888888888888 7888888888887643

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.51  E-value=4.2e-15  Score=81.34  Aligned_cols=56  Identities=18%  Similarity=0.355  Sum_probs=45.6

Q ss_pred             cCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhh
Q psy4421           4 SLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      |++||.|..|++.|.....|.        .|++.|.++++|.|+.|++.|.....|..|+++|.
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLN--------IHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHH--------HHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHH--------HHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            468899999999999988888        88888888888999999999999999999988775

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=6.1e-15  Score=83.15  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             CCCcCCcccccccccccCchHHHHHHhhhhhccccCC-C-CCccceecCccCccccChHHHHHHHHHhhC
Q psy4421           1 VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRP-D-SFKYKYGCYRCSYFTYESNNLKKHILKHTG   68 (167)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~-~-~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~   68 (167)
                      +|++++||.|+.|++.|....+|.        .|++. | .++++|.|+.|++.|.....|..|++.+++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~--------~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFC--------RHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHH--------HHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCCCcchhCCHHHHH--------HHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            367888899999999998888888        77776 6 577888999999999888889988887764

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=4.9e-15  Score=90.24  Aligned_cols=75  Identities=13%  Similarity=0.163  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHhhCCCCCCcccccCcccccccccccC-ChHHHHHHHhhcCCCCCCCCC-CCcccCCCCCccccCchhHHH
Q psy4421          56 SNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISS-DIKDLIEHCKSCSHMTRPDAF-HFKFVCYACEYNTYMSGNIKT  133 (167)
Q Consensus        56 ~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~-~~~~l~~h~~~~~~~~~~~~~-~~~~~C~~C~~~~~~~~~l~~  133 (167)
                      ...+..|+++|.++++|.        |..|++. |. ....|..|+.+       +.+ +++|.|++|++.|.....|..
T Consensus         9 ~~~~~~h~~~h~~~~~~~--------C~~C~k~-f~~~~~~L~~H~~~-------h~~~~~~~~C~~C~k~F~~~~~L~~   72 (98)
T 2gqj_A            9 GGPEEQWQRAIHERGEAV--------CPTCNVV-TRKTLVGLKKHMEV-------CQKLQDALKCQHCRKQFKSKAGLNY   72 (98)
T ss_dssp             CCSCSHHHHTTTTTSCCC--------CTTTCCC-CSSCSHHHHHHHHH-------HHHHHHHHSCSSSCCCCSCHHHHHH
T ss_pred             CCcHHHHHHHhccCCCcC--------CCCCCCC-hhhhHHHHHHHHHH-------HcCCCCCEECCCCCCccCCHHHHHH
Confidence            344455666666666666        6666666 55 66666666666       555 566777777777777777777


Q ss_pred             HHhhhCCCCceeC
Q psy4421         134 HLRLHLDDKPYKC  146 (167)
Q Consensus       134 H~~~h~~~~~~~C  146 (167)
                      |+++|++++|..-
T Consensus        73 H~~~h~~~kp~~~   85 (98)
T 2gqj_A           73 HTMAEHSAKPSDA   85 (98)
T ss_dssp             HHHHHSCSCSSCC
T ss_pred             HHHHHcCCCCCCC
Confidence            7777777776543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=3.7e-14  Score=85.98  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             ccccChHHHHHHHHHhhCCCCCCcccccCccccccccccc-CChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCch
Q psy4421          51 YFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYIS-SDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSG  129 (167)
Q Consensus        51 ~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~-~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  129 (167)
                      ..+.....|..|++.+.++++|.        |+.|++. | .....|..|+.+       + ++++|.|.+|++.|....
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~--------C~~C~k~-F~~~~~~L~~H~~~-------h-~~k~~~C~~Cgk~F~~~~   76 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVS--------CPTCQAV-GRKTIEGLKKHMEN-------C-KQEMFTCHHCGKQLRSLA   76 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEE--------CTTTCSC-EESSHHHHHHHHHH-------H-CCCCCCCSSSCCCCSSHH
T ss_pred             CCCCCchHHHHHHHHhcCCCCcC--------CCCCCCC-cccCHHHHHHHHHH-------H-CCCCeECCCCCCeeCCHH
Confidence            35566677888888888888888        8888888 8 788888888888       7 778888888888888888


Q ss_pred             hHHHH-HhhhCCCCce
Q psy4421         130 NIKTH-LRLHLDDKPY  144 (167)
Q Consensus       130 ~l~~H-~~~h~~~~~~  144 (167)
                      .|..| +++|.++..+
T Consensus        77 ~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           77 GMKYHVMANHNSLPSG   92 (96)
T ss_dssp             HHHHHHHHHTCCCSSC
T ss_pred             HHHHHhHHhcCCCCCC
Confidence            89999 8888765434

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.49  E-value=1.5e-14  Score=79.14  Aligned_cols=56  Identities=21%  Similarity=0.392  Sum_probs=52.1

Q ss_pred             cccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCC
Q psy4421           7 INQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus         7 ~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      ||.|..|++.|.....|.        .|++.|.++++|.|+.|++.|.....|..|+++|.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLK--------KHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHH--------HHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHH--------HHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            789999999999999999        88889999999999999999999999999999988765

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.2e-14  Score=84.62  Aligned_cols=65  Identities=14%  Similarity=0.139  Sum_probs=56.6

Q ss_pred             CCCcCCcccccccccccCchHHHHHHhhhhhccccCCCCC---ccceecCccCccccChHHHHHHH-HHhhCCCCCC
Q psy4421           1 VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSF---KYKYGCYRCSYFTYESNNLKKHI-LKHTGEKPFS   73 (167)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~---~~~~~C~~C~~~~~~~~~l~~H~-~~h~~~~~~~   73 (167)
                      .|++++||.|.+|++.|.....|.        .|++.|.+   +++|.|.+|++.|.....|.+|+ ..|.++++..
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~--------~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLN--------WHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHH--------HHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHH--------HHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            478999999999999999999999        88888875   78899999999999999999999 4577776654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=5e-14  Score=79.44  Aligned_cols=55  Identities=18%  Similarity=0.272  Sum_probs=52.0

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC-CCcccccCchhHHHHhhhc
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS-LCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~h  166 (167)
                      .-++++|.|+.|++.|. ...|..|+++ .+++||.|. .||+.|...+.|..|+++|
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            55778999999999999 9999999999 999999999 9999999999999999986

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=6.5e-14  Score=77.36  Aligned_cols=56  Identities=18%  Similarity=0.311  Sum_probs=51.2

Q ss_pred             CcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHH-HHhhCC
Q psy4421           6 NINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHI-LKHTGE   69 (167)
Q Consensus         6 ~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~-~~h~~~   69 (167)
                      +||.|+.|++.|.....|.        .|++.|.++++|.|+.|++.|.....|.+|+ +.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~--------~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLK--------RHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHH--------HHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHH--------HHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            5899999999999999999        8889999999999999999999999999997 677765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.43  E-value=2.7e-13  Score=77.65  Aligned_cols=57  Identities=25%  Similarity=0.550  Sum_probs=53.0

Q ss_pred             CCCCCcccCCC--CCccccCchhHHHHHhhhCCCCceeCCC--CcccccCchhHHHHhhhc
Q psy4421         110 DAFHFKFVCYA--CEYNTYMSGNIKTHLRLHLDDKPYKCSL--CNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       110 ~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  166 (167)
                      ....++|.|..  |++.|.....|..|+++|.++++|.|.+  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            55678899988  9999999999999999999999999965  999999999999999886

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=8.6e-13  Score=76.53  Aligned_cols=61  Identities=36%  Similarity=0.550  Sum_probs=43.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHH-HhhCC-CCCCcccccCcccccccccccCChHHHHHHHhh
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHIL-KHTGE-KPFSYMYENQQYCIHCNSYISSDIKDLIEHCKS  102 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~-~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~  102 (167)
                      .|+++|.++++|.|.+|++.|.....|..|++ .|.++ ++|.        |+.|++. |.....|..|+..
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~--------C~~C~~~-f~~~~~L~~H~~~   67 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFH--------CPHCDTV-IARKSDLGVHLRK   67 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEE--------CSSSSCE-ESSHHHHHHHHHH
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccC--------CCCCCCc-cCCHHHHHHHHHH
Confidence            67777777777777777777777777777775 45553 6777        7777777 6666667666665

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.2e-12  Score=78.82  Aligned_cols=69  Identities=17%  Similarity=0.174  Sum_probs=53.6

Q ss_pred             ceecCccCccccChHHHHHHHHH-hhCCCCCCcccccCcccccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCC
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILK-HTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYAC  121 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~-h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C  121 (167)
                      .+.|..|++.|.....|..|+++ |.++++..        +..|                            .+|.|++|
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~--------~~~c----------------------------~~~~C~~C   68 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN--------NHVC----------------------------YWEECPRE   68 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCS--------CCCC----------------------------CCTTCSST
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCC--------ccce----------------------------eccCCCCC
Confidence            36788888888888888888887 77766543        1111                            24678888


Q ss_pred             CccccCchhHHHHHhhhCCCCceeCC
Q psy4421         122 EYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       122 ~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      ++.|.....|..|+++|.+++||.|.
T Consensus        69 ~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           69 GKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             TCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            88888888888888888888888886

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=9.3e-14  Score=79.79  Aligned_cols=61  Identities=30%  Similarity=0.503  Sum_probs=47.8

Q ss_pred             cccC-CCCCccceecC--ccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhh
Q psy4421          33 SMVR-PDSFKYKYGCY--RCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKS  102 (167)
Q Consensus        33 ~h~~-~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~  102 (167)
                      .|+. .+.++++|.|+  .|++.|.....|..|+++|.++++|.        |+.|++. |.....|..|+.+
T Consensus         8 ~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~--------C~~C~~~-f~~~~~l~~H~~~   71 (73)
T 1f2i_G            8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ--------CRICMRN-FSRSDHLTTHIRT   71 (73)
T ss_dssp             CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEE--------CTTTCCE-ESCHHHHHHHHTT
T ss_pred             chhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeE--------CCCCCch-hCCHHHHHHHHHh
Confidence            4444 56777888886  58888888888888888888888888        8888888 8888888888754

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.37  E-value=6.1e-13  Score=71.91  Aligned_cols=47  Identities=15%  Similarity=0.426  Sum_probs=44.0

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHh-hhCCCCceeCCCCcccccCc
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLR-LHLDDKPYKCSLCNYECRQN  156 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~  156 (167)
                      +.++++|.|++|++.|.....|..|++ +|.+++||.|.+|++.|.+.
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            678899999999999999999999987 99999999999999999863

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=5.8e-13  Score=80.26  Aligned_cols=61  Identities=23%  Similarity=0.154  Sum_probs=55.7

Q ss_pred             CCcccccccccccCchHHHHHHhhhhhccccCC-CCCccc--------eecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421           5 LNINQCVHCHLTLTKSTEVIVKHAQTCISMVRP-DSFKYK--------YGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus         5 ~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~-~~~~~~--------~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      ...|.|..|++.|....+|.        .|++. |.++++        |.|..|++.|.....|..|+++|++++||.
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~--------~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   92 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELV--------THVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGP   92 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHH--------HHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCS
T ss_pred             cCCCcccccccccCCHHHHH--------HHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            34577999999999999999        88886 888777        899999999999999999999999999999

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3e-12  Score=66.67  Aligned_cols=41  Identities=29%  Similarity=0.321  Sum_probs=39.6

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTS
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            68899999999999999999999999999999999999999

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4e-13  Score=75.68  Aligned_cols=59  Identities=14%  Similarity=0.220  Sum_probs=50.3

Q ss_pred             CcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecC-ccCccccChHHHHHHHHHhhCCCC
Q psy4421           3 ESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCY-RCSYFTYESNNLKKHILKHTGEKP   71 (167)
Q Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~-~C~~~~~~~~~l~~H~~~h~~~~~   71 (167)
                      -+++||.|..|++.|. ...|.        .|+++ .++++|.|+ .|++.|...+.|..|+++|-+..+
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~--------~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQ--------SHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHH--------HHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHH--------HHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4678899999999999 88999        77777 788899999 999999999999999988876544

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.2e-12  Score=66.57  Aligned_cols=41  Identities=27%  Similarity=0.338  Sum_probs=39.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|...+.|..|+++|.++++|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSG   42 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCC
Confidence            68889999999999999999999999999999999999999

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.5e-12  Score=66.41  Aligned_cols=41  Identities=27%  Similarity=0.331  Sum_probs=39.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|++++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSG   42 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.6e-12  Score=66.38  Aligned_cols=41  Identities=29%  Similarity=0.335  Sum_probs=39.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSG   42 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCS
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.6e-12  Score=66.38  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=39.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSG   42 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.5e-12  Score=66.41  Aligned_cols=41  Identities=34%  Similarity=0.379  Sum_probs=39.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSG   42 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSS
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.6e-12  Score=65.72  Aligned_cols=40  Identities=25%  Similarity=0.272  Sum_probs=37.9

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSG   40 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCS
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5778999999999999999999999999999999999999

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.31  E-value=3.6e-12  Score=66.41  Aligned_cols=41  Identities=29%  Similarity=0.395  Sum_probs=39.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSS
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.6e-12  Score=66.34  Aligned_cols=41  Identities=32%  Similarity=0.431  Sum_probs=39.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSS
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.1e-12  Score=66.14  Aligned_cols=41  Identities=24%  Similarity=0.336  Sum_probs=39.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|++|++.|.....|..|+++|++++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG   42 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSS
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.3e-12  Score=66.02  Aligned_cols=41  Identities=24%  Similarity=0.247  Sum_probs=39.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.++++|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSG   42 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.6e-12  Score=66.37  Aligned_cols=41  Identities=24%  Similarity=0.313  Sum_probs=39.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSG   42 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCC
Confidence            68889999999999999999999999999999999999999

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.9e-12  Score=65.85  Aligned_cols=41  Identities=29%  Similarity=0.272  Sum_probs=39.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSG   42 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSS
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.29  E-value=3.9e-12  Score=66.22  Aligned_cols=41  Identities=29%  Similarity=0.443  Sum_probs=39.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSG   42 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCS
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.4e-12  Score=66.42  Aligned_cols=41  Identities=29%  Similarity=0.335  Sum_probs=39.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSG   42 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.2e-14  Score=82.29  Aligned_cols=29  Identities=10%  Similarity=0.187  Sum_probs=22.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHH
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKK   61 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~   61 (167)
                      .|++.|.++++|.|..|++.|.....|..
T Consensus         8 ~H~~~h~~~~~~~C~~C~k~f~~~~~l~~   36 (73)
T 2ctu_A            8 KRQKIHLGDRSQKCSKCGIIFIRRSTLSR   36 (73)
T ss_dssp             CCCCCCCCCSEEECSSSCCEEECCCCCCC
T ss_pred             HHHHHhCCCCCeeCCcccchhCCHHHhCc
Confidence            78888888888888888888877665443

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.28  E-value=1.4e-12  Score=67.97  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             cCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.1e-12  Score=66.14  Aligned_cols=41  Identities=27%  Similarity=0.400  Sum_probs=39.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSG   42 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.1e-12  Score=66.59  Aligned_cols=41  Identities=24%  Similarity=0.212  Sum_probs=38.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSG   42 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.3e-12  Score=66.06  Aligned_cols=41  Identities=29%  Similarity=0.351  Sum_probs=39.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|++++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSG   42 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.28  E-value=2.9e-12  Score=66.76  Aligned_cols=41  Identities=24%  Similarity=0.356  Sum_probs=38.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSG   42 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcC
Confidence            68889999999999999999999999999999999999999

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.28  E-value=2.2e-12  Score=67.19  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.28  E-value=4.8e-12  Score=65.89  Aligned_cols=41  Identities=27%  Similarity=0.314  Sum_probs=39.3

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCS
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCC
Confidence            57889999999999999999999999999999999999999

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.3e-14  Score=83.24  Aligned_cols=58  Identities=14%  Similarity=0.303  Sum_probs=53.8

Q ss_pred             CCCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421           1 VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      +|.+++||.|..|++.|.....|.        .       +++|.|+.|++.|.....|..|+++|.++++|.
T Consensus        12 ~h~~~~~~~C~~C~k~f~~~~~l~--------~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~   69 (73)
T 2ctu_A           12 IHLGDRSQKCSKCGIIFIRRSTLS--------R-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG   69 (73)
T ss_dssp             CCCCCSEEECSSSCCEEECCCCCC--------C-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSS
T ss_pred             HhCCCCCeeCCcccchhCCHHHhC--------c-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCC
Confidence            478999999999999999988877        4       678999999999999999999999999999999

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.7e-12  Score=66.33  Aligned_cols=41  Identities=29%  Similarity=0.409  Sum_probs=38.7

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCS
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCC
Confidence            57889999999999999999999999999999999999999

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.6e-12  Score=67.77  Aligned_cols=40  Identities=18%  Similarity=0.232  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.9e-12  Score=65.82  Aligned_cols=41  Identities=17%  Similarity=0.118  Sum_probs=39.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSG   42 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.28  E-value=3.1e-12  Score=66.60  Aligned_cols=41  Identities=29%  Similarity=0.344  Sum_probs=38.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|++++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSG   42 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=3.7e-12  Score=66.36  Aligned_cols=41  Identities=29%  Similarity=0.288  Sum_probs=38.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSS
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.6e-12  Score=65.92  Aligned_cols=41  Identities=34%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|++|++.|.....|..|+++|.++++|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCS
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=67.80  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            7889999999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.4e-12  Score=66.46  Aligned_cols=41  Identities=32%  Similarity=0.430  Sum_probs=38.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCC
Confidence            67888999999999999999999999999999999999999

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.7e-12  Score=66.36  Aligned_cols=41  Identities=27%  Similarity=0.333  Sum_probs=38.6

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSG   42 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            57889999999999999999999999999999999999999

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2e-12  Score=67.35  Aligned_cols=40  Identities=13%  Similarity=0.181  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=7.7e-12  Score=65.10  Aligned_cols=41  Identities=29%  Similarity=0.241  Sum_probs=39.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSG   42 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCC
Confidence            57889999999999999999999999999999999999999

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=67.91  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             cCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5.7e-12  Score=65.58  Aligned_cols=41  Identities=34%  Similarity=0.443  Sum_probs=39.3

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSG   42 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSS
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=7e-12  Score=65.23  Aligned_cols=41  Identities=22%  Similarity=0.286  Sum_probs=39.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|++++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG   42 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCC
Confidence            57889999999999999999999999999999999999999

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=4.5e-12  Score=65.99  Aligned_cols=41  Identities=29%  Similarity=0.355  Sum_probs=38.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|++++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSG   42 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSS
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            57889999999999999999999999999999999999999

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.8e-12  Score=66.24  Aligned_cols=41  Identities=24%  Similarity=0.148  Sum_probs=38.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|++++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSG   42 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.9e-12  Score=67.46  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.2e-12  Score=66.11  Aligned_cols=41  Identities=32%  Similarity=0.470  Sum_probs=38.6

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSG   42 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            67888999999999999999999999999999999999999

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.7e-12  Score=67.64  Aligned_cols=40  Identities=23%  Similarity=0.222  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.9e-12  Score=66.18  Aligned_cols=41  Identities=27%  Similarity=0.376  Sum_probs=38.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSG   42 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCS
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.9e-12  Score=67.41  Aligned_cols=40  Identities=20%  Similarity=0.300  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.9e-12  Score=67.45  Aligned_cols=40  Identities=18%  Similarity=0.245  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             cCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.26  E-value=4.9e-12  Score=65.81  Aligned_cols=41  Identities=29%  Similarity=0.334  Sum_probs=38.9

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSG   42 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCS
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.1e-12  Score=65.79  Aligned_cols=41  Identities=29%  Similarity=0.293  Sum_probs=38.3

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSG   42 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCC
Confidence            57888999999999999999999999999999999999999

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=7.2e-12  Score=65.23  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|.+|+++|.+++||.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSG   42 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            57889999999999999999999999999999999999999

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=67.75  Aligned_cols=40  Identities=20%  Similarity=0.205  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.5e-12  Score=67.80  Aligned_cols=40  Identities=23%  Similarity=0.275  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             cCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.8e-12  Score=66.84  Aligned_cols=40  Identities=20%  Similarity=0.280  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|.+|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.1e-12  Score=66.11  Aligned_cols=41  Identities=29%  Similarity=0.418  Sum_probs=38.0

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSG   42 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            67888999999999999999999999999999999999999

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=3.4e-12  Score=67.16  Aligned_cols=43  Identities=16%  Similarity=0.182  Sum_probs=40.5

Q ss_pred             CCCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcc
Q psy4421         109 PDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY  151 (167)
Q Consensus       109 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  151 (167)
                      .+.++++|.|++|++.|.....|..|+++|.+++||.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            3677899999999999999999999999999999999999986

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.26  E-value=1.5e-12  Score=67.86  Aligned_cols=40  Identities=20%  Similarity=0.193  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|...+.|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=67.69  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.2e-12  Score=65.72  Aligned_cols=41  Identities=27%  Similarity=0.363  Sum_probs=38.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|++++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSG   42 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCS
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCC
Confidence            57888999999999999999999999999999999999999

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.1e-12  Score=66.64  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=38.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             cCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.7e-12  Score=66.84  Aligned_cols=40  Identities=23%  Similarity=0.241  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=7.7e-12  Score=65.07  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=39.0

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|++++||.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSG   42 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCS
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCC
Confidence            57889999999999999999999999999999999999999

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.1e-12  Score=67.28  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|...+.|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.8e-12  Score=66.78  Aligned_cols=40  Identities=23%  Similarity=0.242  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             cCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.26  E-value=1.9e-12  Score=67.48  Aligned_cols=40  Identities=18%  Similarity=0.289  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.1e-12  Score=67.29  Aligned_cols=40  Identities=20%  Similarity=0.269  Sum_probs=38.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.6e-12  Score=67.73  Aligned_cols=40  Identities=20%  Similarity=0.319  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2e-12  Score=67.38  Aligned_cols=40  Identities=18%  Similarity=0.224  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            7 GSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             cCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.2e-12  Score=67.20  Aligned_cols=40  Identities=25%  Similarity=0.327  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.25  E-value=7.5e-12  Score=65.15  Aligned_cols=41  Identities=27%  Similarity=0.224  Sum_probs=38.6

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSG   42 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCS
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            57888999999999999999999999999999999999999

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.7e-12  Score=65.61  Aligned_cols=41  Identities=29%  Similarity=0.425  Sum_probs=37.9

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|++|++.|.....|.+|+++|++++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSG   42 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCC
Confidence            57888999999999999999999999999999999999999

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.1e-12  Score=67.26  Aligned_cols=40  Identities=23%  Similarity=0.203  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.1e-12  Score=67.26  Aligned_cols=40  Identities=18%  Similarity=0.265  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.25  E-value=1.4e-13  Score=76.63  Aligned_cols=51  Identities=12%  Similarity=0.258  Sum_probs=45.4

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHh
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM  163 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  163 (167)
                      +.++++|.|+.|++.|.....|.   ++|.+++||.|..||+.|....++..+.
T Consensus         9 H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A            9 STNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPKK   59 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCCC
T ss_pred             cCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccccccc
Confidence            88999999999999999988886   7899999999999999999887765443

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.4e-12  Score=67.03  Aligned_cols=40  Identities=20%  Similarity=0.333  Sum_probs=38.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             TSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999986

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.8e-12  Score=67.51  Aligned_cols=40  Identities=18%  Similarity=0.213  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.25  E-value=2.2e-12  Score=67.20  Aligned_cols=40  Identities=20%  Similarity=0.249  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5e-12  Score=65.79  Aligned_cols=41  Identities=29%  Similarity=0.369  Sum_probs=38.6

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG   42 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            67888999999999999999999999999999999999999

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.9e-12  Score=67.41  Aligned_cols=40  Identities=20%  Similarity=0.304  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.6e-12  Score=67.77  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.9e-12  Score=67.39  Aligned_cols=40  Identities=20%  Similarity=0.244  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=7.2e-12  Score=65.19  Aligned_cols=41  Identities=32%  Similarity=0.387  Sum_probs=38.9

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSG   42 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.7e-12  Score=67.71  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|...+.|..|+++|.++++|.|..|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.8e-12  Score=66.79  Aligned_cols=40  Identities=20%  Similarity=0.236  Sum_probs=38.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.6e-12  Score=67.70  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.3e-12  Score=67.13  Aligned_cols=40  Identities=23%  Similarity=0.322  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.24  E-value=7e-12  Score=64.94  Aligned_cols=42  Identities=12%  Similarity=0.118  Sum_probs=40.0

Q ss_pred             CCCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCc
Q psy4421         109 PDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCN  150 (167)
Q Consensus       109 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~  150 (167)
                      .+.++++|.|++|++.|.....|..|+++|.++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            378899999999999999999999999999999999999997

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5.2e-12  Score=65.73  Aligned_cols=41  Identities=29%  Similarity=0.352  Sum_probs=38.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSG   42 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCC
Confidence            57888999999999999999999999999999999999999

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.8e-12  Score=66.25  Aligned_cols=41  Identities=27%  Similarity=0.340  Sum_probs=37.6

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            67888899999999999999999999999999999999998

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.7e-12  Score=67.61  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=38.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.2e-12  Score=66.60  Aligned_cols=40  Identities=20%  Similarity=0.236  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.5e-11  Score=63.98  Aligned_cols=41  Identities=29%  Similarity=0.382  Sum_probs=39.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSG   42 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            57889999999999999999999999999999999999999

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=8e-12  Score=65.25  Aligned_cols=41  Identities=32%  Similarity=0.432  Sum_probs=38.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHH-HhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHIL-KHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~   73 (167)
                      .|+++|.++++|.|++|++.|.....|..|++ +|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~   43 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSG   43 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSS
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCC
Confidence            67888999999999999999999999999999 999999999

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.6e-12  Score=67.74  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.23  E-value=3.1e-12  Score=66.66  Aligned_cols=40  Identities=25%  Similarity=0.245  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=3.7e-12  Score=66.33  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            7 GSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=4e-12  Score=66.18  Aligned_cols=40  Identities=25%  Similarity=0.313  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.4e-12  Score=67.07  Aligned_cols=40  Identities=20%  Similarity=0.233  Sum_probs=38.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.8e-12  Score=66.78  Aligned_cols=40  Identities=18%  Similarity=0.237  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|.+|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.7e-12  Score=66.31  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=38.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999999875

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.21  E-value=2.3e-11  Score=63.26  Aligned_cols=42  Identities=29%  Similarity=0.304  Sum_probs=39.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCc
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSY   74 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~   74 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSS
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            688899999999999999999999999999999999999993

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.2e-12  Score=66.12  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=38.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|.+|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=6.7e-12  Score=65.56  Aligned_cols=40  Identities=20%  Similarity=0.269  Sum_probs=38.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHh-hhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLR-LHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|++ +|.+++||.|..|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            888999999999999999999999999 9999999999987

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=2.5e-11  Score=63.11  Aligned_cols=41  Identities=29%  Similarity=0.360  Sum_probs=39.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|++++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSG   42 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            58889999999999999999999999999999999999999

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.20  E-value=6.4e-12  Score=67.78  Aligned_cols=46  Identities=30%  Similarity=0.396  Sum_probs=33.3

Q ss_pred             CCCCccceecCccCccccChHHHHHHHH-HhhCCCCCCcccccCcccccccccccC
Q psy4421          37 PDSFKYKYGCYRCSYFTYESNNLKKHIL-KHTGEKPFSYMYENQQYCIHCNSYISS   91 (167)
Q Consensus        37 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~~~~~~~~~c~~c~~~~~~   91 (167)
                      .+.++++|.|.+|++.|.....|.+|++ +|.++++|.        |.+|++. |.
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~--------C~~C~k~-F~   52 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHK--------CQVWVSG-PS   52 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCC--------SSSSCCS-SC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCcc--------CCCCCCC-CC
Confidence            4556677777777777777777777775 677777777        7777776 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.4e-11  Score=62.55  Aligned_cols=41  Identities=32%  Similarity=0.401  Sum_probs=39.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|++.|.++++|.|..|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSG   42 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.5e-11  Score=62.46  Aligned_cols=42  Identities=29%  Similarity=0.379  Sum_probs=39.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCc
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSY   74 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~   74 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C   43 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP   43 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSS
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCC
Confidence            688899999999999999999999999999999999999993

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.3e-11  Score=62.59  Aligned_cols=42  Identities=26%  Similarity=0.338  Sum_probs=39.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCc
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSY   74 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~   74 (167)
                      .|++.|.++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            678899999999999999999999999999999999999993

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.6e-11  Score=63.05  Aligned_cols=41  Identities=29%  Similarity=0.354  Sum_probs=39.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|.+|++.|.....|.+|+++|+++++|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSG   42 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCS
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCC
Confidence            57889999999999999999999999999999999999999

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.18  E-value=2.6e-11  Score=61.73  Aligned_cols=40  Identities=25%  Similarity=0.272  Sum_probs=37.3

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      |+++|.++++|.|+.|++.|.....|.+|+++|.++++|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPS   40 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCC
Confidence            5678889999999999999999999999999999999998

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.1e-11  Score=62.03  Aligned_cols=41  Identities=29%  Similarity=0.302  Sum_probs=39.3

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPS   42 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCC
Confidence            68889999999999999999999999999999999999998

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=9.8e-12  Score=64.69  Aligned_cols=40  Identities=25%  Similarity=0.333  Sum_probs=38.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999875

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.6e-11  Score=62.50  Aligned_cols=41  Identities=24%  Similarity=0.301  Sum_probs=39.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|.+|+++|.++++|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSG   42 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTT
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=3.1e-11  Score=62.11  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=39.3

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS   42 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCC
Confidence            68889999999999999999999999999999999999998

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.4e-11  Score=63.17  Aligned_cols=41  Identities=29%  Similarity=0.355  Sum_probs=39.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCS
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.8e-11  Score=62.86  Aligned_cols=41  Identities=27%  Similarity=0.353  Sum_probs=39.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSG   42 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.5e-11  Score=62.50  Aligned_cols=41  Identities=24%  Similarity=0.255  Sum_probs=39.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.++++|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSG   42 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSS
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.9e-11  Score=61.01  Aligned_cols=40  Identities=25%  Similarity=0.215  Sum_probs=37.3

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      |+++|.++++|.|+.|++.|...+.|.+|+++|.++++|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPS   40 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            5678889999999999999999999999999999999998

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.9e-11  Score=63.60  Aligned_cols=41  Identities=20%  Similarity=0.163  Sum_probs=38.9

Q ss_pred             CCCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         109 PDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       109 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      .+.++++|.|++|++.|.....|..|+++|.+++||.|..|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            37889999999999999999999999999999999999987

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5.2e-11  Score=61.87  Aligned_cols=42  Identities=31%  Similarity=0.337  Sum_probs=39.7

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCc
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSY   74 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~   74 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            678899999999999999999999999999999999999993

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.4e-11  Score=63.17  Aligned_cols=40  Identities=20%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|.+|
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999999999999999999999999999999999987

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.8e-11  Score=62.87  Aligned_cols=41  Identities=29%  Similarity=0.404  Sum_probs=38.7

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.5e-11  Score=62.49  Aligned_cols=41  Identities=29%  Similarity=0.364  Sum_probs=39.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|++.|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSG   42 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.16  E-value=7.4e-12  Score=71.52  Aligned_cols=55  Identities=35%  Similarity=0.559  Sum_probs=37.7

Q ss_pred             CCCccceecCc--cCccccChHHHHHHHHHhhCCCCCCcccccCccccc--ccccccCChHHHHHHHh
Q psy4421          38 DSFKYKYGCYR--CSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIH--CNSYISSDIKDLIEHCK  101 (167)
Q Consensus        38 ~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~--c~~~~~~~~~~l~~h~~  101 (167)
                      ....++|.|..  |++.|.....|..|+++|.++++|.        |..  |++. |.....|..|+.
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~--------C~~~~C~k~-f~~~~~l~~H~~   70 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFS--------CSWKGCERR-FARSDELSRHRR   70 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEE--------CCCTTCCCE-ESSHHHHHHHTT
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCcc--------CCCCCCCcc-cCCHHHHHhHhh
Confidence            34456677766  7777777777777777777777777        643  7777 677777777654

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.4e-11  Score=62.58  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=38.9

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSS
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=4.2e-11  Score=62.19  Aligned_cols=41  Identities=27%  Similarity=0.374  Sum_probs=39.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.++++|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSG   42 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCS
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCC
Confidence            57889999999999999999999999999999999999999

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.3e-11  Score=62.60  Aligned_cols=41  Identities=29%  Similarity=0.404  Sum_probs=38.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.5e-11  Score=62.51  Aligned_cols=41  Identities=32%  Similarity=0.340  Sum_probs=38.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|.+|+++|++++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            57888999999999999999999999999999999999999

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.4e-11  Score=62.52  Aligned_cols=41  Identities=29%  Similarity=0.394  Sum_probs=38.9

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|.+|+++|++++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~   42 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSG   42 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcC
Confidence            67889999999999999999999999999999999999999

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.9e-11  Score=62.33  Aligned_cols=42  Identities=26%  Similarity=0.301  Sum_probs=39.0

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCc
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSY   74 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~   74 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP   43 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCS
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            578889999999999999999999999999999999999993

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.3e-11  Score=62.59  Aligned_cols=41  Identities=29%  Similarity=0.414  Sum_probs=38.6

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSS
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCC
Confidence            67888999999999999999999999999999999999999

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.4e-11  Score=62.10  Aligned_cols=40  Identities=28%  Similarity=0.293  Sum_probs=35.2

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      ++++|.++++|.|..|++.|.....|..|+++|.+++||.
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCS
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCC
Confidence            4567888889999999999999999999999999999998

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.9e-11  Score=61.95  Aligned_cols=41  Identities=22%  Similarity=0.238  Sum_probs=39.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|.+|++.|.....|.+|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSG   42 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=5.1e-11  Score=60.59  Aligned_cols=40  Identities=28%  Similarity=0.416  Sum_probs=38.0

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS   41 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCC
Confidence            6788999999999999999999999999999999999998

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.14  E-value=7.2e-11  Score=59.99  Aligned_cols=40  Identities=18%  Similarity=0.158  Sum_probs=37.7

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      |+++|.++++|.|+.|++.|.....|..|+++|++++||.
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~   41 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS   41 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCC
Confidence            5778899999999999999999999999999999999998

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=5.5e-11  Score=61.46  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=37.0

Q ss_pred             CCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCccccccc
Q psy4421          36 RPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCN   86 (167)
Q Consensus        36 ~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~   86 (167)
                      ..|.++++|.|..|++.|.....|.+|+++|+++++|.        |+.|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~--------C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS--------GPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCC--------CCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCC--------CcCCC
Confidence            35778888999999999999999999999999999998        87775

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=5.1e-11  Score=61.89  Aligned_cols=41  Identities=22%  Similarity=0.222  Sum_probs=39.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.++++|.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSG   42 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            68889999999999999999999999999999999999999

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.3e-11  Score=62.11  Aligned_cols=41  Identities=32%  Similarity=0.393  Sum_probs=39.0

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.14  E-value=2e-11  Score=62.13  Aligned_cols=38  Identities=13%  Similarity=0.207  Sum_probs=35.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            78889999999999999999999999999999999985

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=2.1e-11  Score=64.05  Aligned_cols=36  Identities=31%  Similarity=0.604  Sum_probs=22.7

Q ss_pred             CCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          38 DSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        38 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      +.++++|.|.+|++.|.....|..|+++|++++||.
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   42 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCcc
Confidence            344556666666666666666666666666666666

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2e-11  Score=63.44  Aligned_cols=39  Identities=18%  Similarity=0.242  Sum_probs=37.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.2e-11  Score=63.26  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.3e-11  Score=62.15  Aligned_cols=41  Identities=32%  Similarity=0.431  Sum_probs=38.7

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSS
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            67889999999999999999999999999999999999999

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.2e-11  Score=62.22  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=36.6

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .+++|.++++|.|.+|++.|.....|..|+++|.+++||.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSG   42 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCS
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            4567888999999999999999999999999999999999

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.3e-11  Score=63.16  Aligned_cols=39  Identities=18%  Similarity=0.310  Sum_probs=37.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|+.|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.6e-11  Score=63.03  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=37.0

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.12  E-value=1.8e-11  Score=63.65  Aligned_cols=39  Identities=28%  Similarity=0.400  Sum_probs=37.0

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=9.4e-11  Score=60.25  Aligned_cols=41  Identities=27%  Similarity=0.249  Sum_probs=38.9

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+.+|.++++|.|..|++.|.....|..|+++|.+++||.
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPS   42 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCC
Confidence            57888999999999999999999999999999999999998

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.5e-11  Score=61.42  Aligned_cols=41  Identities=27%  Similarity=0.221  Sum_probs=38.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPS   42 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCC
Confidence            67888999999999999999999999999999999999998

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.5e-11  Score=63.12  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=37.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.12  E-value=1e-11  Score=66.96  Aligned_cols=51  Identities=16%  Similarity=0.096  Sum_probs=45.7

Q ss_pred             cccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          15 LTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        15 ~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      +.|.....|.        .|+..|.++++|.|..|++.|...+.|..|+++|++++||.
T Consensus         4 k~~~~~~~l~--------~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTE--------KPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCC--------CCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchh--------hHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4577777777        88889999999999999999999999999999999999873

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.3e-11  Score=63.24  Aligned_cols=39  Identities=18%  Similarity=0.253  Sum_probs=37.0

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=5.6e-11  Score=61.10  Aligned_cols=41  Identities=20%  Similarity=0.257  Sum_probs=39.0

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPS   42 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTT
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcC
Confidence            68889999999999999999999999999999999999998

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.2e-11  Score=63.31  Aligned_cols=39  Identities=18%  Similarity=0.268  Sum_probs=37.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=5.3e-11  Score=61.83  Aligned_cols=41  Identities=22%  Similarity=0.154  Sum_probs=38.6

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhC-CCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTG-EKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~-~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+ ++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~   43 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGP   43 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSS
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCC
Confidence            578899999999999999999999999999999999 99998

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.7e-11  Score=62.94  Aligned_cols=39  Identities=21%  Similarity=0.263  Sum_probs=37.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             cCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            888999999999999999999999999999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.7e-11  Score=62.42  Aligned_cols=39  Identities=18%  Similarity=0.312  Sum_probs=37.0

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999973

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.8e-11  Score=61.07  Aligned_cols=38  Identities=11%  Similarity=0.183  Sum_probs=35.8

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|...+.|..|+++|.+++||.|.
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            78889999999999999999999999999999999884

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.3e-11  Score=61.53  Aligned_cols=41  Identities=22%  Similarity=0.311  Sum_probs=38.2

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|++|++.|.....|..|+++|.++++|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPS   42 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCC
Confidence            57889999999999999999999999999999999999998

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.5e-11  Score=62.52  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999973

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.2e-11  Score=62.70  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=37.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            888999999999999999999999999999999999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.11  E-value=1.3e-11  Score=66.48  Aligned_cols=44  Identities=16%  Similarity=0.303  Sum_probs=27.8

Q ss_pred             ccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         123 YNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       123 ~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      +.|.....|..|+++|.++++|.|..||+.|...+.|..|+++|
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   47 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELR   47 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHh
Confidence            34555555666666666666666666666666666666666654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.4e-11  Score=61.81  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|..|++.|.....|.+|+++|.+++||.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSG   42 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCT
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCC
Confidence            47788889999999999999999999999999999999998

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.3e-11  Score=63.21  Aligned_cols=39  Identities=18%  Similarity=0.224  Sum_probs=37.0

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.3e-11  Score=63.21  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            788999999999999999999999999999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.2e-11  Score=61.31  Aligned_cols=41  Identities=27%  Similarity=0.348  Sum_probs=35.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|++++||.
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS   41 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            36778888888999999999988888988988888888887

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.7e-11  Score=62.30  Aligned_cols=38  Identities=18%  Similarity=0.187  Sum_probs=35.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            78899999999999999999999999999999999985

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.9e-11  Score=62.83  Aligned_cols=39  Identities=21%  Similarity=0.289  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.9e-11  Score=62.15  Aligned_cols=38  Identities=16%  Similarity=0.200  Sum_probs=36.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            78899999999999999999999999999999999985

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.2e-11  Score=63.23  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3e-11  Score=62.76  Aligned_cols=39  Identities=23%  Similarity=0.309  Sum_probs=37.0

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999973

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.6e-11  Score=62.47  Aligned_cols=39  Identities=21%  Similarity=0.318  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             cCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.6e-11  Score=63.01  Aligned_cols=39  Identities=23%  Similarity=0.318  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            788999999999999999999999999999999999973

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.9e-11  Score=61.59  Aligned_cols=41  Identities=27%  Similarity=0.359  Sum_probs=38.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSG   42 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            67889999999999999999999999999999999999998

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=59.55  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            778899999999999999999999999999999999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=6.2e-11  Score=60.28  Aligned_cols=40  Identities=28%  Similarity=0.327  Sum_probs=35.3

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      |+++|.++++|.|+.|++.|...+.|..|+++|.+++||+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS   41 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTT
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            5678888889999999999999999999999999888887

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.9e-11  Score=62.13  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=35.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            78899999999999999999999999999999999985

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.1e-11  Score=62.29  Aligned_cols=39  Identities=18%  Similarity=0.282  Sum_probs=37.0

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.6e-11  Score=60.82  Aligned_cols=41  Identities=22%  Similarity=0.197  Sum_probs=39.1

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPS   42 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCS
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCC
Confidence            67889999999999999999999999999999999999998

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.6e-11  Score=63.03  Aligned_cols=39  Identities=13%  Similarity=0.154  Sum_probs=36.8

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             cCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            788999999999999999999999999999999999973

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.3e-11  Score=61.52  Aligned_cols=39  Identities=21%  Similarity=0.297  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999963

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.6e-11  Score=63.06  Aligned_cols=39  Identities=21%  Similarity=0.328  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            888999999999999999999999999999999999973

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.2e-10  Score=59.83  Aligned_cols=41  Identities=24%  Similarity=0.154  Sum_probs=38.9

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|.+|++.|.....|..|+++|++++||.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            67889999999999999999999999999999999999987

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=8.4e-11  Score=61.04  Aligned_cols=41  Identities=27%  Similarity=0.341  Sum_probs=37.5

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|+++|.++++|.|.+|++.|.....|.+|+++|.+++||.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSG   42 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCC
Confidence            56788889999999999999999999999999999999998

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.7e-11  Score=62.91  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             cCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            788999999999999999999999999999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.7e-11  Score=61.62  Aligned_cols=37  Identities=19%  Similarity=0.350  Sum_probs=34.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKC  146 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  146 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             cCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            7888999999999999999999999999999999987

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.06  E-value=5.8e-11  Score=60.34  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=34.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKC  146 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  146 (167)
                      +.++++|.|++|++.|...+.|..|+++|.+++||.|
T Consensus         6 H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            7888999999999999999999999999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=7.7e-11  Score=60.58  Aligned_cols=38  Identities=18%  Similarity=0.141  Sum_probs=36.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|.
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            7 GAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            78889999999999999999999999999999999984

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.1e-11  Score=61.59  Aligned_cols=38  Identities=11%  Similarity=0.153  Sum_probs=35.8

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            78899999999999999999999999999999999984

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=3.8e-11  Score=61.76  Aligned_cols=38  Identities=11%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            7 GHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            78889999999999999999999999999999999884

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=5.2e-11  Score=60.60  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=34.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKC  146 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  146 (167)
                      +.++++|.|++|++.|...+.|..|+++|.+++||.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             cCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            7888999999999999999999999999999999887

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=2.1e-10  Score=59.48  Aligned_cols=40  Identities=23%  Similarity=0.234  Sum_probs=37.3

Q ss_pred             CCCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         109 PDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       109 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      .+.++++|.|++|++.|.....|..|+++|.+++||.|..
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            3788999999999999999999999999999999999963

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=4.3e-11  Score=62.12  Aligned_cols=39  Identities=21%  Similarity=0.293  Sum_probs=36.8

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             SCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            788999999999999999999999999999999999973

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.9e-11  Score=62.34  Aligned_cols=39  Identities=26%  Similarity=0.295  Sum_probs=36.9

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.++++|.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             SSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            888999999999999999999999999999999999973

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=3e-10  Score=58.92  Aligned_cols=41  Identities=27%  Similarity=0.338  Sum_probs=37.8

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCc
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSY   74 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~   74 (167)
                      .++.|.++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            46678899999999999999999999999999999999993

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=7e-11  Score=61.35  Aligned_cols=39  Identities=26%  Similarity=0.225  Sum_probs=36.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCC-CCceeCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLD-DKPYKCSL  148 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~-~~~~~C~~  148 (167)
                      +.++++|.|++|++.|.....|..|+++|.+ ++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             cCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7889999999999999999999999999999 99999963

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=4e-10  Score=57.55  Aligned_cols=38  Identities=24%  Similarity=0.293  Sum_probs=35.2

Q ss_pred             CCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          36 RPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        36 ~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      +.|.++++|.|..|++.|.....|..|+++|++++||.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGP   40 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSS
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCcc
Confidence            46778899999999999999999999999999999998

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4.3e-11  Score=60.88  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=34.4

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKC  146 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  146 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            7888999999999999999999999999999999987

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.7e-10  Score=58.32  Aligned_cols=37  Identities=19%  Similarity=0.345  Sum_probs=34.8

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKC  146 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  146 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            7788999999999999999999999999999999987

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.9e-10  Score=60.14  Aligned_cols=40  Identities=25%  Similarity=0.291  Sum_probs=38.2

Q ss_pred             CCCCCcccCC--CCCccccCchhHHHHHhhhCCCCceeCCCC
Q psy4421         110 DAFHFKFVCY--ACEYNTYMSGNIKTHLRLHLDDKPYKCSLC  149 (167)
Q Consensus       110 ~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  149 (167)
                      +.++++|.|.  .|++.|.....|..|+++|.+++||.|..|
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7889999998  899999999999999999999999999987

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2e-10  Score=59.27  Aligned_cols=40  Identities=25%  Similarity=0.270  Sum_probs=35.4

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      +...|.++++|.|..|++.|.....|..|+++|.++++|.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGP   42 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCC
Confidence            4567888889999999999999999999999999999998

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.1e-11  Score=62.22  Aligned_cols=38  Identities=29%  Similarity=0.322  Sum_probs=36.1

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             SCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            78899999999999999999999999999999999996

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.1e-10  Score=59.30  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=35.6

Q ss_pred             cccCCCCCccceecC--ccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          33 SMVRPDSFKYKYGCY--RCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .|.++|.++++|.|.  .|++.|.....|.+|+++|++++||.
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   44 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSG   44 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCS
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            456678888899998  89999999999999999999999998

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7.8e-11  Score=60.54  Aligned_cols=38  Identities=11%  Similarity=0.142  Sum_probs=35.5

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|.
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            78889999999999999999999999999999999884

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2e-10  Score=59.02  Aligned_cols=38  Identities=13%  Similarity=0.116  Sum_probs=34.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS  147 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  147 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            7 GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            78889999999999999999999999999999998773

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.8e-11  Score=69.80  Aligned_cols=54  Identities=19%  Similarity=0.205  Sum_probs=49.4

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      +.+++++.|+.|+..|. ...|..|+ .+.+++|+.|..|++.|. ..+|..|++++
T Consensus        12 ~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c   65 (75)
T 2d9k_A           12 ECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVC   65 (75)
T ss_dssp             CCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHB
T ss_pred             cCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHc
Confidence            78899999999999995 88999999 899999999999999988 58999999876

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.95  E-value=1e-10  Score=64.81  Aligned_cols=49  Identities=16%  Similarity=0.278  Sum_probs=42.2

Q ss_pred             ccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCC
Q psy4421          32 ISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSD   92 (167)
Q Consensus        32 ~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~   92 (167)
                      ..|+++|.++++|.|+.|++.|.....|.   ++|.+++||.        |+.|++. |..
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~--------C~~C~k~-f~~   51 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFR--------CTFCHTE-VEE   51 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEB--------CSSSCCB-CEE
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEE--------CCCCCCc-ccc
Confidence            37888999999999999999999888776   7899999999        9999988 543

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.94  E-value=2.5e-10  Score=56.22  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=23.6

Q ss_pred             HHhhhCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |+++|.+++||.|+.|++.|...+.|..|+++|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            456677777777777777777777777777665

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=6.1e-10  Score=56.16  Aligned_cols=38  Identities=29%  Similarity=0.345  Sum_probs=30.9

Q ss_pred             CCCCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          36 RPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        36 ~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      .+|.++++|.|++|++.|.....|..|+++|++++||.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS   40 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcC
Confidence            35677788888888888888888888888888888877

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.7e-10  Score=58.26  Aligned_cols=40  Identities=10%  Similarity=0.127  Sum_probs=37.2

Q ss_pred             CCCcCCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCc
Q psy4421           1 VQESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYR   48 (167)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~   48 (167)
                      +|++++||.|..|++.|.....|.        .|+++|.++++|.|+.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~--------~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLV--------THQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHH--------HHHTTTSSCCCCCSCC
T ss_pred             CCCCCcCccCCCCCCccCChHHHH--------HHHHHhCCCCCCCCCC
Confidence            478999999999999999999999        9999999999999973

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=2.3e-09  Score=59.80  Aligned_cols=40  Identities=18%  Similarity=0.176  Sum_probs=36.1

Q ss_pred             CCCCCCcccCCC--CCccccCchhHHHHH-hhhCCCCceeCCC
Q psy4421         109 PDAFHFKFVCYA--CEYNTYMSGNIKTHL-RLHLDDKPYKCSL  148 (167)
Q Consensus       109 ~~~~~~~~~C~~--C~~~~~~~~~l~~H~-~~h~~~~~~~C~~  148 (167)
                      ...+++||+|..  |++.|...++|..|+ ++|++++||.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            378899999975  999999999999997 7999999999965

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.6e-09  Score=53.21  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=32.1

Q ss_pred             CCCCCccceecCccCccccChHHHHHHHHHhhCCCC
Q psy4421          36 RPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKP   71 (167)
Q Consensus        36 ~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~   71 (167)
                      +.|.++++|.|..|++.|.....|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            567888999999999999999999999999998865

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.85  E-value=1.2e-09  Score=54.45  Aligned_cols=36  Identities=14%  Similarity=0.220  Sum_probs=32.4

Q ss_pred             CCCCcccCCCCCccccCchhHHHHHhhhCCCCceeC
Q psy4421         111 AFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKC  146 (167)
Q Consensus       111 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  146 (167)
                      .++++|.|++|++.|...+.|..|+++|.+++||.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            467899999999999999999999999999998865

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.85  E-value=2.5e-09  Score=52.51  Aligned_cols=36  Identities=19%  Similarity=0.187  Sum_probs=32.4

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhCC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      |++.|.++++|.|+.|++.|.....|.+|+++|.++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            678888999999999999999999999999988764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.83  E-value=3.2e-09  Score=52.82  Aligned_cols=36  Identities=17%  Similarity=0.174  Sum_probs=29.3

Q ss_pred             CCCccceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          38 DSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        38 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      |.++++|.|..|++.|...+.|..|+++|++++||.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            346778888888888888888888888888888876

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.81  E-value=5.1e-09  Score=50.60  Aligned_cols=34  Identities=26%  Similarity=0.259  Sum_probs=28.0

Q ss_pred             CCCccceecCccCccccChHHHHHHHHHhhCCCC
Q psy4421          38 DSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKP   71 (167)
Q Consensus        38 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~   71 (167)
                      |.++++|.|..|++.|.....|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5677888888888888888888888888887764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.8e-09  Score=53.22  Aligned_cols=31  Identities=26%  Similarity=0.484  Sum_probs=21.2

Q ss_pred             hhhCCCCceeCCCCcccccCchhHHHH-hhhc
Q psy4421         136 RLHLDDKPYKCSLCNYECRQNVHLKSH-MKSN  166 (167)
Q Consensus       136 ~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h  166 (167)
                      ++|.+++||.|..|++.|...+.|..| +++|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            346667777777777777777777777 6554

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.79  E-value=5.6e-09  Score=50.52  Aligned_cols=34  Identities=24%  Similarity=0.243  Sum_probs=25.6

Q ss_pred             CCCccceecCccCccccChHHHHHHHHHhhCCCC
Q psy4421          38 DSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKP   71 (167)
Q Consensus        38 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~   71 (167)
                      |.++++|.|..|++.|.....|.+|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            4567778888888888888888888877777654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.4e-09  Score=53.50  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=22.3

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCc
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKP  143 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~  143 (167)
                      +.++++|.|+.|++.|.....|..|+++|.+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            5556666666666666666666666666666553

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.79  E-value=3.5e-09  Score=51.21  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=18.8

Q ss_pred             CCCCcccCCCCCccccCchhHHHHHhhhCCCC
Q psy4421         111 AFHFKFVCYACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       111 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      .++++|.|+.|++.|.....|..|+++|.+++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            44555666666666666666666666665554

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.78  E-value=4.3e-09  Score=50.96  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=18.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      +.++++|.|++|++.|...+.|..|+++|.+++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            344555556666666555555555555555544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.76  E-value=6.1e-09  Score=49.86  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCCCcee
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDDKPYK  145 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~  145 (167)
                      +||.|++|++.|...+.|..|+++|.|+++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47999999999999999999999999999874

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=3.9e-09  Score=52.37  Aligned_cols=30  Identities=23%  Similarity=0.502  Sum_probs=14.8

Q ss_pred             CCCCcccCCC--CCccccCchhHHHHHhhhCC
Q psy4421         111 AFHFKFVCYA--CEYNTYMSGNIKTHLRLHLD  140 (167)
Q Consensus       111 ~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~  140 (167)
                      .+++||+|+.  |++.|.....|..|+++|+|
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            3444555543  55555555555555555544

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=1.1e-09  Score=64.94  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=41.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCccccccccc
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSY   88 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~   88 (167)
                      .+..+|.++++|.|..|++.|.....|..|+++|++++||.        |..|...
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~--------C~~~~~~   62 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKR--------AKRQERR   62 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHH--------CCCCSCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcc--------cchhhhH
Confidence            34456889999999999999999999999999999999999        7776554

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=7.3e-09  Score=50.47  Aligned_cols=29  Identities=17%  Similarity=0.450  Sum_probs=15.9

Q ss_pred             hCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         138 HLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |.+++||.|..|++.|...+.|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            44455555555555555555555555544

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=1.6e-08  Score=56.36  Aligned_cols=37  Identities=24%  Similarity=0.199  Sum_probs=33.6

Q ss_pred             CCCCccceecCc--cCccccChHHHHHHH-HHhhCCCCCC
Q psy4421          37 PDSFKYKYGCYR--CSYFTYESNNLKKHI-LKHTGEKPFS   73 (167)
Q Consensus        37 ~~~~~~~~~C~~--C~~~~~~~~~l~~H~-~~h~~~~~~~   73 (167)
                      ..++++||.|..  |++.|...++|.+|+ ++|++++|+-
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~   60 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAF   60 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcc
Confidence            457899999975  999999999999998 6899999998

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1.6e-08  Score=49.66  Aligned_cols=35  Identities=34%  Similarity=0.493  Sum_probs=30.3

Q ss_pred             cCCCCCccceecCccCccccChHHHHHH-HHHhhCC
Q psy4421          35 VRPDSFKYKYGCYRCSYFTYESNNLKKH-ILKHTGE   69 (167)
Q Consensus        35 ~~~~~~~~~~~C~~C~~~~~~~~~l~~H-~~~h~~~   69 (167)
                      +++|.+++||.|+.|++.|.....|..| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            3567888999999999999999999999 8888764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.71  E-value=1.4e-08  Score=48.51  Aligned_cols=32  Identities=31%  Similarity=0.444  Sum_probs=28.3

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCCCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEKPFS   73 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~   73 (167)
                      +||.|+.|++.|.....|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            46889999999999999999999999998874

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=8.1e-09  Score=50.29  Aligned_cols=29  Identities=45%  Similarity=0.918  Sum_probs=14.3

Q ss_pred             hCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         138 HLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |.+++||.|..|++.|.+.+.|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            34444555555555555555555554443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=2.3e-08  Score=48.96  Aligned_cols=35  Identities=26%  Similarity=0.549  Sum_probs=30.8

Q ss_pred             CCCCCccceecCccCccccCh-HHHHHHHHHhhCCC
Q psy4421          36 RPDSFKYKYGCYRCSYFTYES-NNLKKHILKHTGEK   70 (167)
Q Consensus        36 ~~~~~~~~~~C~~C~~~~~~~-~~l~~H~~~h~~~~   70 (167)
                      .+|.++++|.|+.|++.|... ..|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            357788999999999999999 99999999998764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.69  E-value=2.4e-08  Score=49.15  Aligned_cols=35  Identities=23%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             CCCccceecC--ccCccccChHHHHHHHHHhhCCCCC
Q psy4421          38 DSFKYKYGCY--RCSYFTYESNNLKKHILKHTGEKPF   72 (167)
Q Consensus        38 ~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~   72 (167)
                      |.++++|.|.  .|++.|...+.|.+|+++|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4577889999  5999999999999999999998886

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=7.3e-10  Score=65.75  Aligned_cols=53  Identities=15%  Similarity=0.258  Sum_probs=44.3

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++||.|..|..    ...|..|+++|
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~   72 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYA   72 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccc
Confidence            778899999999999999999999999999999999987654    44455555543

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=1e-08  Score=49.86  Aligned_cols=32  Identities=25%  Similarity=0.561  Sum_probs=16.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      +.++++|.|++|++.|.....|..|+++|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            34445555555555555555555555555443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=9.6e-09  Score=50.34  Aligned_cols=29  Identities=21%  Similarity=0.528  Sum_probs=15.9

Q ss_pred             hCCCCceeCCCCcccccCc-hhHHHHhhhc
Q psy4421         138 HLDDKPYKCSLCNYECRQN-VHLKSHMKSN  166 (167)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h  166 (167)
                      |.+++||.|..|++.|.+. +.|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhc
Confidence            4455555555555555555 5555555543

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=2.9e-08  Score=48.19  Aligned_cols=34  Identities=44%  Similarity=0.656  Sum_probs=29.9

Q ss_pred             CCCCccceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          37 PDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        37 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      .|.++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4677889999999999999999999999998764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.66  E-value=1.4e-08  Score=53.01  Aligned_cols=33  Identities=15%  Similarity=0.284  Sum_probs=22.2

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHh-hhCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLR-LHLDDK  142 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~  142 (167)
                      +.++++|.|.+|++.|....+|..|++ +|.++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            456677777777777777777777777 676654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=3.3e-08  Score=48.93  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=28.1

Q ss_pred             CCCccceecCc--cCccccChHHHHHHHHHhhCC
Q psy4421          38 DSFKYKYGCYR--CSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        38 ~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      +.+++||.|+.  |++.|...+.|.+|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56788999986  999999999999999999875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.65  E-value=1.9e-08  Score=45.59  Aligned_cols=27  Identities=30%  Similarity=0.769  Sum_probs=22.5

Q ss_pred             CCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         141 DKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++||.|..||+.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468888888888888888888888774

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=3.2e-08  Score=48.07  Aligned_cols=34  Identities=35%  Similarity=0.575  Sum_probs=29.0

Q ss_pred             CCCCccceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          37 PDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        37 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      .|.++++|.|.+|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            4677888999999999999999999999888753

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.64  E-value=1.6e-08  Score=45.94  Aligned_cols=27  Identities=30%  Similarity=0.859  Sum_probs=23.0

Q ss_pred             CCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         141 DKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++||.|..||+.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468899999999999999999988874

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=2.7e-08  Score=48.37  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=25.5

Q ss_pred             CCCCccceecCccCccccChHHHHHHHHHhhCC
Q psy4421          37 PDSFKYKYGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        37 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      .|.++++|.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            456677788888888888888888888877765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=4.3e-08  Score=47.54  Aligned_cols=34  Identities=26%  Similarity=0.240  Sum_probs=28.7

Q ss_pred             CCCCccceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          37 PDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        37 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      .|.++++|.|+.|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            4567788999999999999999999999888764

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.6e-08  Score=58.06  Aligned_cols=59  Identities=22%  Similarity=0.308  Sum_probs=49.6

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccCChHHHHHHHhhc
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC  103 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~  103 (167)
                      .|+..+.+++++.|..|++.| ....|..|+ .+.+++|+.        |+.|++. +. ...|..|+.+|
T Consensus         7 ~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~~~~~~--------C~~C~~~-~~-~~~l~~H~~~c   65 (75)
T 2d9k_A            7 GHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCGARTEL--------CGNCGRN-VL-VKDLKTHPEVC   65 (75)
T ss_dssp             CCCCCCCCCCCEECSSSCCEE-CHHHHHHHH-HHHHHCEEE--------CSSSCCE-EE-TTGGGTHHHHB
T ss_pred             hhCcccCCCcccCCcccChHh-hHHHHHHHH-hHcCCCceE--------cccCCCc-Cc-HHHHHHHHHHc
Confidence            788888899999999999998 488899998 888899988        8889887 54 47788888774

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.8e-08  Score=48.30  Aligned_cols=32  Identities=22%  Similarity=0.441  Sum_probs=17.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      +.++++|.|++|++.|.....|..|+++|.++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            34445555555555555555555555555543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=6e-08  Score=47.05  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=29.3

Q ss_pred             CCCCccceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          37 PDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        37 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      .+.++++|.|+.|++.|.....|..|+++|.+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            3567788999999999999999999999998764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.58  E-value=4e-08  Score=44.80  Aligned_cols=27  Identities=22%  Similarity=0.645  Sum_probs=22.6

Q ss_pred             CCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         141 DKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++||.|..|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            468888889988888888888888764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.58  E-value=2.3e-08  Score=48.84  Aligned_cols=26  Identities=15%  Similarity=0.331  Sum_probs=16.4

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHH
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHL  135 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~  135 (167)
                      ..+++||.|++|++.|...++|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            44566666666666666666666665

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=7.6e-08  Score=46.61  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=22.7

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCC
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      +.++++|.|++|++.|.....|..|+++|.+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            555667777777777777777777777776653

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.56  E-value=2.8e-08  Score=48.94  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=26.9

Q ss_pred             CCCCcccCC--CCCccccCchhHHHHHhhhCCCCce
Q psy4421         111 AFHFKFVCY--ACEYNTYMSGNIKTHLRLHLDDKPY  144 (167)
Q Consensus       111 ~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~  144 (167)
                      .++++|.|.  .|++.|...+.|..|+++|.++++|
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            456788888  5888888888888888888887775

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.53  E-value=3e-08  Score=48.42  Aligned_cols=26  Identities=19%  Similarity=0.397  Sum_probs=24.5

Q ss_pred             hCCCCceeCCCCcccccCchhHHHHh
Q psy4421         138 HLDDKPYKCSLCNYECRQNVHLKSHM  163 (167)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~  163 (167)
                      +.|++||.|+.||++|.+.+.|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            46899999999999999999999997

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.50  E-value=6.4e-08  Score=50.44  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             CCCccceecCccCccccChHHHHHHHH-HhhCCCC
Q psy4421          38 DSFKYKYGCYRCSYFTYESNNLKKHIL-KHTGEKP   71 (167)
Q Consensus        38 ~~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~   71 (167)
                      |.++++|.|.+|++.|.....|..|++ +|.++..
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            567778888888888888888888887 7776643

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.49  E-value=1.6e-07  Score=45.88  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=28.8

Q ss_pred             CCCccceecCc--cCccccChHHHHHHHHHhhCCC
Q psy4421          38 DSFKYKYGCYR--CSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        38 ~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      +.++++|.|.+  |++.|...+.|..|+++|++++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            56788999984  9999999999999999998864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.49  E-value=1.2e-08  Score=53.00  Aligned_cols=32  Identities=19%  Similarity=0.539  Sum_probs=19.7

Q ss_pred             HhhhCCCCceeCC--CCcccccCchhHHHHhhhc
Q psy4421         135 LRLHLDDKPYKCS--LCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       135 ~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h  166 (167)
                      ...|.+++||.|.  .|++.|...+.|..|+++|
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H   43 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence            3446666666664  4666666666666666654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.47  E-value=6.1e-09  Score=49.47  Aligned_cols=31  Identities=19%  Similarity=0.388  Sum_probs=26.2

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCCCce
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDDKPY  144 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  144 (167)
                      +||.|+.|++.|...+.|..|+++|.+++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4688888888888888888888888888876

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=1.2e-07  Score=43.66  Aligned_cols=27  Identities=22%  Similarity=0.588  Sum_probs=20.8

Q ss_pred             CCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         141 DKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++||.|..|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            467888888888888888888887763

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.43  E-value=8.7e-08  Score=53.42  Aligned_cols=40  Identities=10%  Similarity=-0.016  Sum_probs=33.6

Q ss_pred             CCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCc
Q psy4421         110 DAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCN  150 (167)
Q Consensus       110 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~  150 (167)
                      +..++||+|..|++.|.....|..|+++|+++. ..+..++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            677899999999999999999999999999864 3444444

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.81  E-value=2.6e-08  Score=44.69  Aligned_cols=26  Identities=31%  Similarity=0.701  Sum_probs=20.2

Q ss_pred             CceeCCCCcccccCchhHHHHhhhcC
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      +||.|..||+.|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            46788888888888888888887763

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.43  E-value=1.2e-07  Score=46.33  Aligned_cols=32  Identities=19%  Similarity=0.382  Sum_probs=16.2

Q ss_pred             CCCCCcccCCC--CCccccCchhHHHHHhhhCCC
Q psy4421         110 DAFHFKFVCYA--CEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       110 ~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      +.++++|.|.+  |++.|...+.|..|+++|.|+
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            34445555542  555555555555555555443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.42  E-value=9.1e-08  Score=49.55  Aligned_cols=38  Identities=16%  Similarity=0.322  Sum_probs=33.3

Q ss_pred             cccCCCCCccceecC--ccCccccChHHHHHHHHHhhCCC
Q psy4421          33 SMVRPDSFKYKYGCY--RCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      .+...|.++++|.|.  .|++.|...+.|..|+++|++++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            455668899999996  79999999999999999999864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.41  E-value=1.8e-07  Score=42.78  Aligned_cols=29  Identities=38%  Similarity=0.692  Sum_probs=22.1

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      +||.|+.|++.|.....|..|+++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            36778888888888888888888777653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.40  E-value=2.7e-07  Score=42.11  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=24.1

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            36889999999999999999988887753

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.40  E-value=2.9e-07  Score=41.97  Aligned_cols=29  Identities=38%  Similarity=0.565  Sum_probs=25.4

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      ++|.|..|++.|.....|..|+++|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            46899999999999999999999998764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.40  E-value=2.6e-07  Score=42.20  Aligned_cols=27  Identities=30%  Similarity=0.583  Sum_probs=19.3

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      +|.|+.|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            567777777777777777777777654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.40  E-value=2.3e-07  Score=42.66  Aligned_cols=28  Identities=18%  Similarity=0.377  Sum_probs=21.3

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      ++|.|..|++.|.....|..|+++|.++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            5677888888888777888887777765

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.39  E-value=1.7e-07  Score=42.85  Aligned_cols=27  Identities=30%  Similarity=0.561  Sum_probs=14.6

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      ||.|+.|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            455555555555555555555555443

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.39  E-value=3.7e-08  Score=46.62  Aligned_cols=31  Identities=10%  Similarity=0.187  Sum_probs=22.4

Q ss_pred             CcccccccccccCchHHHHHHhhhhhccccCCCCCccce
Q psy4421           6 NINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKY   44 (167)
Q Consensus         6 ~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~   44 (167)
                      +||.|.+|++.|...+.|.        .|+++|.++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~--------~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALS--------KHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTS--------SSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHH--------HHHHHHccCCCC
Confidence            4677777777777777777        777777776665

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.38  E-value=3.2e-07  Score=42.14  Aligned_cols=30  Identities=30%  Similarity=0.590  Sum_probs=24.9

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEKP   71 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~   71 (167)
                      ++|.|..|++.|...+.|..|+++|.++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            368899999999999999999988887653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.37  E-value=3.5e-07  Score=42.00  Aligned_cols=28  Identities=29%  Similarity=0.644  Sum_probs=20.6

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCCC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      +|.|+.|++.|...+.|..|+++|.+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            5777777777777777777777776654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.37  E-value=4e-07  Score=42.73  Aligned_cols=28  Identities=14%  Similarity=0.366  Sum_probs=17.3

Q ss_pred             CcccCC--CCCccccCchhHHHHHhhhCCC
Q psy4421         114 FKFVCY--ACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       114 ~~~~C~--~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      ++|.|+  .|++.|.....|..|+++|.++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            456666  5666666666666666666554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.37  E-value=2.2e-07  Score=41.77  Aligned_cols=25  Identities=28%  Similarity=0.655  Sum_probs=18.2

Q ss_pred             ceeCCCCcccccCchhHHHHhhhcC
Q psy4421         143 PYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ||.|..|++.|.+.+.|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            4677778888887777877777763

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.36  E-value=2.6e-07  Score=42.11  Aligned_cols=27  Identities=33%  Similarity=0.741  Sum_probs=19.2

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      +|.|+.|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            567777777777777777777777655

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.35  E-value=3.3e-07  Score=43.02  Aligned_cols=27  Identities=37%  Similarity=0.705  Sum_probs=24.9

Q ss_pred             CCceeCC--CCcccccCchhHHHHhhhcC
Q psy4421         141 DKPYKCS--LCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       141 ~~~~~C~--~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++||.|.  .|++.|...+.|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            5789999  89999999999999999874

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.33  E-value=3.9e-07  Score=41.46  Aligned_cols=29  Identities=24%  Similarity=0.364  Sum_probs=24.2

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      ++|.|..|++.|.....|..|+++|.+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            46889999999998889999988888763

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.33  E-value=3.9e-07  Score=42.43  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=17.9

Q ss_pred             cccCC--CCCccccCchhHHHHHhhhCCC
Q psy4421         115 KFVCY--ACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       115 ~~~C~--~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      ||.|+  .|++.|...+.|..|+++|.|+
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            56665  6666666666666666666654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.32  E-value=2.2e-07  Score=42.41  Aligned_cols=27  Identities=37%  Similarity=0.699  Sum_probs=16.3

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      +|.|+.|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            456666666666666666666666554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.32  E-value=5.3e-07  Score=50.22  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=31.0

Q ss_pred             CCCCccceecCccCccccChHHHHHHHHHhhCCCC
Q psy4421          37 PDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKP   71 (167)
Q Consensus        37 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~   71 (167)
                      .+.+++||.|.+|++.|.....|.+|+++|+++..
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            45678999999999999999999999999998743

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.65  E-value=7.5e-08  Score=44.47  Aligned_cols=25  Identities=28%  Similarity=0.618  Sum_probs=18.5

Q ss_pred             CceeCCCCcccccCchhHHHHhhhc
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      +||.|..|++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIH   26 (30)
Confidence            5677777777777777777777765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.28  E-value=5.6e-07  Score=40.42  Aligned_cols=25  Identities=20%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             cceecCccCccccChHHHHHHHHHh
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKH   66 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h   66 (167)
                      ++|.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            5678888888888888888887765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.27  E-value=4e-07  Score=41.27  Aligned_cols=28  Identities=21%  Similarity=0.467  Sum_probs=25.2

Q ss_pred             CCcccCCCCCccccCchhHHHHHhhhCC
Q psy4421         113 HFKFVCYACEYNTYMSGNIKTHLRLHLD  140 (167)
Q Consensus       113 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~  140 (167)
                      +++|.|+.|++.|.....|..|+++|.|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3689999999999999999999998864

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.27  E-value=5.6e-07  Score=40.33  Aligned_cols=27  Identities=22%  Similarity=0.474  Sum_probs=23.6

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      ||.|+.|++.|.....|..|+++|.++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            589999999999999999999999764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.58  E-value=1.1e-07  Score=43.57  Aligned_cols=27  Identities=19%  Similarity=0.397  Sum_probs=15.2

Q ss_pred             cccCCCCCccccCchhHHHHHhhhCCC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      ||.|+.|++.|...++|..|+++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            455555555555555555555555543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.26  E-value=5e-07  Score=42.07  Aligned_cols=27  Identities=33%  Similarity=0.565  Sum_probs=17.3

Q ss_pred             ceecC--ccCccccChHHHHHHHHHhhCC
Q psy4421          43 KYGCY--RCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        43 ~~~C~--~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      ||.|+  .|++.|...+.|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            46665  6666666666666666666654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.57  E-value=1.2e-07  Score=43.70  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=26.4

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCCC
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      ++|.|+.|++.|.....|..|+++|.+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            68999999999999999999999998763

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.57  E-value=1.3e-07  Score=43.41  Aligned_cols=27  Identities=30%  Similarity=0.534  Sum_probs=16.4

Q ss_pred             ceecCccCccccChHHHHHHHHHhhCC
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      +|.|..|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            456666666666666666666665544

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.24  E-value=7.2e-07  Score=40.99  Aligned_cols=27  Identities=15%  Similarity=0.361  Sum_probs=16.0

Q ss_pred             cccCCCCCccccCchhHHHH-HhhhCCC
Q psy4421         115 KFVCYACEYNTYMSGNIKTH-LRLHLDD  141 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H-~~~h~~~  141 (167)
                      +|.|+.|++.|...+.|..| +++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            45666666666666666666 4555544

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.21  E-value=8e-07  Score=40.84  Aligned_cols=26  Identities=35%  Similarity=0.582  Sum_probs=23.2

Q ss_pred             CceeCCCCcccccCchhHHHH-hhhcC
Q psy4421         142 KPYKCSLCNYECRQNVHLKSH-MKSNH  167 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H-~~~hh  167 (167)
                      +||.|..|++.|...+.|..| +++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            579999999999999999999 67763

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.20  E-value=4.6e-07  Score=40.84  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=13.9

Q ss_pred             cceecCccCccccChHHHHHHHHHh
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKH   66 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h   66 (167)
                      +||.|+.|++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            3455555555555555555555443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.19  E-value=9e-07  Score=40.27  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             CceeCC--CCcccccCchhHHHHhhhcC
Q psy4421         142 KPYKCS--LCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       142 ~~~~C~--~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++|.|.  .|++.|...+.|..|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            468888  88888888888888888764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.29  E-value=6.4e-07  Score=39.85  Aligned_cols=24  Identities=38%  Similarity=0.625  Sum_probs=11.9

Q ss_pred             ceecCccCccccChHHHHHHHHHh
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILKH   66 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~h   66 (167)
                      ||.|+.|++.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            344555555555555555554443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.93  E-value=5e-06  Score=37.61  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=18.4

Q ss_pred             ceecC--ccCccccChHHHHHHHHHhh
Q psy4421          43 KYGCY--RCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus        43 ~~~C~--~C~~~~~~~~~l~~H~~~h~   67 (167)
                      +|.|.  .|++.|...+.|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            56777  77777777777777777665

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.93  E-value=1.5e-05  Score=43.96  Aligned_cols=48  Identities=19%  Similarity=0.512  Sum_probs=38.3

Q ss_pred             CCCccccCchhHHHHH-hhhCCCC------ceeCC--CCcccccCchhHHHHhhhcC
Q psy4421         120 ACEYNTYMSGNIKTHL-RLHLDDK------PYKCS--LCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       120 ~C~~~~~~~~~l~~H~-~~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~hh  167 (167)
                      .|++.|.+...|..|+ ..|.+.+      +|.|.  .|++.+.....|..|+++.|
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            5778888888888886 4676554      79996  79998888889999998876

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.43  E-value=3e-05  Score=48.24  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=17.9

Q ss_pred             hhCCCCceeCCCCcccccCchhHHHHhhh
Q psy4421         137 LHLDDKPYKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      .++|+++|.|..|++.|.+.+.|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            35556666666666666666666666654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.00041  Score=38.08  Aligned_cols=23  Identities=17%  Similarity=0.554  Sum_probs=12.3

Q ss_pred             ceecC--ccCccccChHHHHHHHHH
Q psy4421          43 KYGCY--RCSYFTYESNNLKKHILK   65 (167)
Q Consensus        43 ~~~C~--~C~~~~~~~~~l~~H~~~   65 (167)
                      +|.|.  .|++.+.....|..|++.
T Consensus        38 ~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A           38 PLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCEeeCCCCcCCCCChHHHHhhccc
Confidence            45554  555555555555555543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.69  E-value=0.002  Score=40.39  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=22.3

Q ss_pred             CCCCceeCCCCcccccCchhHHHHhh
Q psy4421         139 LDDKPYKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      .+.+.|.|..|++.|.+...|..|..
T Consensus        89 ~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           89 GEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            34567889999999999999999985

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.46  E-value=0.001  Score=41.36  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=27.9

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHH
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILK   65 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~   65 (167)
                      ....++|.++|.|..|++.|.+...|..|+++
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            34578899999999999999999999999753

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.33  E-value=0.0019  Score=32.60  Aligned_cols=23  Identities=13%  Similarity=0.363  Sum_probs=18.0

Q ss_pred             CcccCCCCCccccCchhHHHHHh
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLR  136 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~  136 (167)
                      ..|.|+.|+..|.....|+.|++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            56778888888888888888776

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.05  E-value=0.0048  Score=40.58  Aligned_cols=72  Identities=15%  Similarity=0.239  Sum_probs=53.6

Q ss_pred             ccccccccCChHHHHHHHhhcCCCCCCCCCCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHH
Q psy4421          83 IHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSH  162 (167)
Q Consensus        83 ~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  162 (167)
                      ..|+..  .....+..|...|        ...+..|+.|+..+ .+..|..|....-..++..|..|+..|.. .+|..|
T Consensus        88 ~GC~~~--~~~~~l~~H~~~C--------~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H  155 (170)
T 3hcs_A           88 EGCLHK--MELRHLEDHQAHC--------EFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIH  155 (170)
T ss_dssp             TTCCCE--EEGGGHHHHHTTC--------TTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHH
T ss_pred             CCCCce--ecHhHHHHHHhcC--------CceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhH
Confidence            356654  3456778887543        34567899999887 56678999988888889999999998765 477888


Q ss_pred             hhhc
Q psy4421         163 MKSN  166 (167)
Q Consensus       163 ~~~h  166 (167)
                      ..++
T Consensus       156 ~~~~  159 (170)
T 3hcs_A          156 DQNC  159 (170)
T ss_dssp             HTTC
T ss_pred             HHhC
Confidence            7653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.66  E-value=0.01  Score=37.16  Aligned_cols=22  Identities=18%  Similarity=0.375  Sum_probs=17.3

Q ss_pred             CcccccccccccCchHHHHHHh
Q psy4421           6 NINQCVHCHLTLTKSTEVIVKH   27 (167)
Q Consensus         6 ~~~~C~~C~~~f~~~~~l~~~~   27 (167)
                      +++.|..|+..|.+.+.+..|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHH
Confidence            5678999999998888887444

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.56  E-value=0.03  Score=28.21  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=18.4

Q ss_pred             CceeCCCCcccccCchhHHHHhh
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      .+|.|+.|+..|+....|+.|++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            56788888888888888888875

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.38  E-value=0.026  Score=26.52  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=15.3

Q ss_pred             eeCCCCcccccCchhHHHHhhhc
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |.|+.|.+.|.+...|..|....
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~   28 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAV   28 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhc
Confidence            66777777777777776666543

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=93.84  E-value=0.044  Score=25.90  Aligned_cols=23  Identities=17%  Similarity=0.264  Sum_probs=16.3

Q ss_pred             CceeCCCCcccccCchhHHHHhh
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      ..+.|..|+.+|....++..|++
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            45677777777777777777764

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=93.14  E-value=0.034  Score=31.39  Aligned_cols=47  Identities=21%  Similarity=0.326  Sum_probs=31.3

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHH
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSH  162 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  162 (167)
                      ..|.|..|+..+. +..|..|...-.+-..|.|..|++.|.. .++..|
T Consensus         9 V~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A            9 VFFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             CEEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             eEEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            3578888886544 4467788655444456888888888874 334444

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=92.71  E-value=0.055  Score=30.54  Aligned_cols=14  Identities=36%  Similarity=0.716  Sum_probs=8.6

Q ss_pred             CcccCCCCCccccC
Q psy4421         114 FKFVCYACEYNTYM  127 (167)
Q Consensus       114 ~~~~C~~C~~~~~~  127 (167)
                      ..|+||.||..|.-
T Consensus        50 F~FkCP~CgEEFyG   63 (95)
T 2k5c_A           50 FVFKCPVCGEEFYG   63 (95)
T ss_dssp             SEEECTTTCCEEET
T ss_pred             HhhcCCCccHHHhc
Confidence            35677777766544

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.11  E-value=0.2  Score=23.43  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=19.3

Q ss_pred             ceecCccCccccChHHHHHHHHH
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILK   65 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~   65 (167)
                      .|.|++|.+.+.+...|..|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHh
Confidence            48899999999998888888754

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.09  E-value=0.16  Score=28.61  Aligned_cols=26  Identities=31%  Similarity=0.520  Sum_probs=17.4

Q ss_pred             CceeCCCCccccc-------CchhHHHHhhhcC
Q psy4421         142 KPYKCSLCNYECR-------QNVHLKSHMKSNH  167 (167)
Q Consensus       142 ~~~~C~~C~~~f~-------~~~~l~~H~~~hh  167 (167)
                      ..-.|.+|++.+.       -.+.|++|+++.|
T Consensus        27 ~~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H   59 (76)
T 2djr_A           27 QYATCRLCGRQVSRGPGVNVGTTALWKHLKSMH   59 (76)
T ss_dssp             SCEEESSSCCBCCCCSSCCSSSCHHHHHHHHTT
T ss_pred             CEEECCCCCCccCCCCCCCCchHHHHHHHHHHC
Confidence            3456777777776       2467888887665

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=90.01  E-value=0.081  Score=34.59  Aligned_cols=76  Identities=17%  Similarity=0.259  Sum_probs=49.2

Q ss_pred             ccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCcccccccccccC
Q psy4421          12 HCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISS   91 (167)
Q Consensus        12 ~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~~~~   91 (167)
                      -|+.... ..++.        .|.. .-...+..|+.|+..+ ....|..|....=..+...        |+.|+..  .
T Consensus        89 GC~~~~~-~~~l~--------~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~--------C~~C~~~--~  147 (170)
T 3hcs_A           89 GCLHKME-LRHLE--------DHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVS--------CDNCAAS--M  147 (170)
T ss_dssp             TCCCEEE-GGGHH--------HHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEE--------CTTTCCE--E
T ss_pred             CCCceec-HhHHH--------HHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeE--------CCCCCCc--c
Confidence            5666543 35666        5653 2334567899999987 5566888886555555555        9999886  3


Q ss_pred             ChHHHHHHHhhcCCCCC
Q psy4421          92 DIKDLIEHCKSCSHMTR  108 (167)
Q Consensus        92 ~~~~l~~h~~~~~~~~~  108 (167)
                      ...++..|..+++....
T Consensus       148 ~~~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          148 AFEDKEIHDQNCPLALE  164 (170)
T ss_dssp             EGGGHHHHHTTCCC---
T ss_pred             CHHHHHhHHHhCcChhh
Confidence            45778899888765543

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=89.95  E-value=0.3  Score=24.50  Aligned_cols=13  Identities=31%  Similarity=0.721  Sum_probs=8.7

Q ss_pred             cccccccccccCc
Q psy4421           7 INQCVHCHLTLTK   19 (167)
Q Consensus         7 ~~~C~~C~~~f~~   19 (167)
                      .|.|-.|+.+|..
T Consensus         3 iY~C~rCg~~fs~   15 (48)
T 4ayb_P            3 VYRCGKCWKTFTD   15 (48)
T ss_dssp             --CCCCTTTTCCC
T ss_pred             EEEeeccCCCccH
Confidence            5778888888765

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=87.26  E-value=1  Score=21.21  Aligned_cols=27  Identities=15%  Similarity=0.208  Sum_probs=22.5

Q ss_pred             CCCcccCCCCCccccCchhHHHHHhhh
Q psy4421         112 FHFKFVCYACEYNTYMSGNIKTHLRLH  138 (167)
Q Consensus       112 ~~~~~~C~~C~~~~~~~~~l~~H~~~h  138 (167)
                      ....+.|..|.-.|....++..|++.-
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             ccCcCeeccccceehhhHHHhhhheec
Confidence            345789999999999999999997743

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=87.15  E-value=0.38  Score=27.74  Aligned_cols=19  Identities=26%  Similarity=0.558  Sum_probs=8.9

Q ss_pred             eeCCCCcccccCchhHHHHhhh
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      ..|-+||+.|..   |.+|+++
T Consensus        22 iiClecGK~fK~---LkRHL~~   40 (87)
T 2jsp_A           22 IVCLECGGSFKS---LKRHLTT   40 (87)
T ss_dssp             EECTBTCCEESB---HHHHHHH
T ss_pred             eEecccchhhHH---HHHHHHH
Confidence            445555555442   3345444

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=85.67  E-value=0.41  Score=24.79  Aligned_cols=19  Identities=21%  Similarity=0.801  Sum_probs=10.2

Q ss_pred             eCCCCcccccCchhHHHHh
Q psy4421         145 KCSLCNYECRQNVHLKSHM  163 (167)
Q Consensus       145 ~C~~C~~~f~~~~~l~~H~  163 (167)
                      .|..|+..|..+.+++.|+
T Consensus        15 eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           15 ECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             CCTTTTCCCCSSSCHHHHH
T ss_pred             cccccCcccccccchhhhh
Confidence            4555555555555555554

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=83.63  E-value=0.68  Score=27.66  Aligned_cols=29  Identities=21%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             ccceecCccCccccChHHHHHHHHHhhCCCCCCcccccCccccccccc
Q psy4421          41 KYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSY   88 (167)
Q Consensus        41 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~c~~c~~~   88 (167)
                      ..++.|..||+.|..           .-.+|..        |+.|...
T Consensus        65 v~p~~C~~CG~~F~~-----------~~~kPsr--------CP~CkSe   93 (105)
T 2gmg_A           65 IKPAQCRKCGFVFKA-----------EINIPSR--------CPKCKSE   93 (105)
T ss_dssp             ECCCBBTTTCCBCCC-----------CSSCCSS--------CSSSCCC
T ss_pred             EECcChhhCcCeecc-----------cCCCCCC--------CcCCCCC
Confidence            467999999999921           1245666        9998765

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=83.56  E-value=1.2  Score=23.95  Aligned_cols=33  Identities=12%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             CCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccC
Q psy4421         112 FHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQ  155 (167)
Q Consensus       112 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  155 (167)
                      ....|.|..|+..+....           ..+..|+.||.+...
T Consensus        18 ~~v~Y~C~~Cg~~~~l~~-----------~~~iRC~~CG~RILy   50 (63)
T 3h0g_L           18 ATMIYLCADCGARNTIQA-----------KEVIRCRECGHRVMY   50 (63)
T ss_dssp             -CCCCBCSSSCCBCCCCS-----------SSCCCCSSSCCCCCB
T ss_pred             CCeEEECCCCCCeeecCC-----------CCceECCCCCcEEEE
Confidence            356799999998877441           356889999986654

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=81.60  E-value=1.2  Score=19.74  Aligned_cols=21  Identities=24%  Similarity=0.616  Sum_probs=12.4

Q ss_pred             eeCCCCcccccCchhHHHHhh
Q psy4421         144 YKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      |.|+.|........+|..|..
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHH
Confidence            556666666666666665543

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=81.54  E-value=0.88  Score=20.70  Aligned_cols=21  Identities=19%  Similarity=0.580  Sum_probs=14.5

Q ss_pred             eCCCCcccccCchhHHHHhhh
Q psy4421         145 KCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       145 ~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      -|..|.+.++.--+|..|++.
T Consensus        11 hcrfckkkysdvknlikhire   31 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            467777777777777777664

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=81.09  E-value=0.55  Score=31.69  Aligned_cols=26  Identities=23%  Similarity=0.484  Sum_probs=20.7

Q ss_pred             CCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcc
Q psy4421         113 HFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY  151 (167)
Q Consensus       113 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  151 (167)
                      ...|.|.+||..+.             |+.|..|+.||-
T Consensus       169 ~~~~~C~~CG~i~~-------------g~~p~~CP~C~~  194 (202)
T 1yuz_A          169 DKFHLCPICGYIHK-------------GEDFEKCPICFR  194 (202)
T ss_dssp             CCEEECSSSCCEEE-------------SSCCSBCTTTCC
T ss_pred             CcEEEECCCCCEEc-------------CcCCCCCCCCCC
Confidence            45799999998865             246799999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.001
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.003
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.004
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	0.004
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (75), Expect = 0.001
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 136 RLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
           R H  +KPY+C +C+    Q+  +K H+   H
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (73), Expect = 0.003
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 141 DKPYKCSLCNYECRQNVHLKSHMKSNH 167
            KPY C  C     +  HL  H+K  H
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVH 29

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (72), Expect = 0.004
 Identities = 6/31 (19%), Positives = 10/31 (32%)

Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
                 + + YKC  C      +  L  H +
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.6 bits (72), Expect = 0.004
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
             R     KP++C  C+    ++ HL  H K
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.6 bits (72), Expect = 0.004
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 136 RLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
           R H  +KPY CS C+   RQ   L  H K  H
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.77
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.65
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.39
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.39
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.34
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.34
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.33
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.31
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.27
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.27
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.17
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.16
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.16
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.13
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.11
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.1
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.09
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.09
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.09
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.07
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.03
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.01
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.0
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.94
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.93
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.87
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.81
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.81
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.8
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.75
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.74
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.73
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.69
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.67
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.59
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.57
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.5
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.45
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.37
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.36
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.26
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.17
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.17
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.14
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.12
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.06
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.03
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.98
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.96
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.92
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.91
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.85
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.8
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.78
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.78
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.6
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.57
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.57
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.57
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.54
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.53
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.52
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.51
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.47
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.43
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.41
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.4
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.4
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.37
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.36
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.29
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.25
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.14
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.13
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.1
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.91
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.9
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.82
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.82
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.79
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.78
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.76
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.64
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.49
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.45
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.31
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.27
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.01
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.72
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.66
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.53
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.25
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.22
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.18
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.42
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.36
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.98
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.96
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	93.69
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.18
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	93.01
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.86
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.84
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.6
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.4
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.05
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.77
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.64
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	89.33
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	89.09
d1fu9a_	36	U-shaped transcription factor, different fingers {	88.98
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.78
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	88.44
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.77
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	84.06
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	83.09
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	82.84
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	82.07
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	81.68
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	80.75
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	80.42
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	80.4

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.1e-19  Score=95.88  Aligned_cols=53  Identities=26%  Similarity=0.587  Sum_probs=51.1

Q ss_pred             CCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         113 HFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       113 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |+||.| .||+.|....+|..|+++|.|++||.|.+||++|.+.++|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            589999 59999999999999999999999999999999999999999999986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-17  Score=88.94  Aligned_cols=53  Identities=19%  Similarity=0.272  Sum_probs=44.5

Q ss_pred             CCcccccccccccCchHHHHHHhhhhhccccCCCCCccceecCccCccccChHHHHHHHHHh
Q psy4421           5 LNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKH   66 (167)
Q Consensus         5 ~~~~~C~~C~~~f~~~~~l~~~~~~~~~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h   66 (167)
                      ||||.| +||+.|....+|.        .|+++|++++||.|++||+.|...+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~--------~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRD--------RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHH--------HHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhH--------HHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            578888 4888888888888        8888888888888888888888888888888765

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.3e-14  Score=67.02  Aligned_cols=32  Identities=44%  Similarity=0.778  Sum_probs=25.4

Q ss_pred             hhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         136 RLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       136 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      |+|+||+||.|.+||++|.+.++|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            46788888888888888888888888888775

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=4.1e-14  Score=68.59  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=29.0

Q ss_pred             HHhhhCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |.|+|+||+||.|..|+++|.+.++|.+|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            567889999999999999999999999998886

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.5e-13  Score=66.89  Aligned_cols=37  Identities=19%  Similarity=0.607  Sum_probs=34.1

Q ss_pred             CCCcccCCCCCccccCchhHHHHHh-hhCCCCceeCCC
Q psy4421         112 FHFKFVCYACEYNTYMSGNIKTHLR-LHLDDKPYKCSL  148 (167)
Q Consensus       112 ~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~C~~  148 (167)
                      .++||+|.+|++.|...++|..|++ +|+|++||.|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4789999999999999999999975 799999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1e-13  Score=67.66  Aligned_cols=33  Identities=18%  Similarity=0.421  Sum_probs=21.2

Q ss_pred             HHhhhCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       134 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |+++|.+++||.|++||++|.+.++|..|+++|
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~H   35 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH   35 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTT
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccC
Confidence            455666666666666666666666666666665

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.7e-13  Score=66.09  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=34.8

Q ss_pred             cccCCCCCccceecCccCccccChHHHHHHHHHhhCC
Q psy4421          33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      +|+.+|.+++||.|++||+.|...++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            6889999999999999999999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3e-13  Score=63.35  Aligned_cols=30  Identities=27%  Similarity=0.591  Sum_probs=22.6

Q ss_pred             hhCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         137 LHLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       137 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      +|+|++||.|..||++|.+.++|..|+++|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~H   30 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH   30 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhcccc
Confidence            467777777777777777777777777776

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.5e-13  Score=64.68  Aligned_cols=32  Identities=34%  Similarity=0.731  Sum_probs=25.1

Q ss_pred             hhhCCCCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         136 RLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       136 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      |+|+||+||.|++|+++|...++|.+|++.+|
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            46788888888888888888888888876544

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.1e-12  Score=60.41  Aligned_cols=33  Identities=36%  Similarity=0.458  Sum_probs=25.0

Q ss_pred             CCCCccceecCccCccccChHHHHHHHHHhhCC
Q psy4421          37 PDSFKYKYGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        37 ~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      +|++++||.|.+||+.|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            366777777777777777777777777777765

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=1.5e-12  Score=61.77  Aligned_cols=29  Identities=17%  Similarity=0.505  Sum_probs=16.7

Q ss_pred             hCCCCceeCCCCcccccCchhHHHHhhhc
Q psy4421         138 HLDDKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       138 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |+|++||.|.+|++.|.+.++|.+|+++|
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcccc
Confidence            34555555555555555555555555554

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.7e-12  Score=61.22  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=27.1

Q ss_pred             CccceecCccCccccChHHHHHHHH-HhhCCCCCC
Q psy4421          40 FKYKYGCYRCSYFTYESNNLKKHIL-KHTGEKPFS   73 (167)
Q Consensus        40 ~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~   73 (167)
                      .++||.|.+||+.|...++|.+|++ +|++++||+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~   36 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHK   36 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcC
Confidence            3577888888888888888888875 588888888

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.1e-11  Score=59.86  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=31.0

Q ss_pred             ccCCCCCccceecCccCccccChHHHHHHHHHhhC
Q psy4421          34 MVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTG   68 (167)
Q Consensus        34 h~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~   68 (167)
                      |.++|++++||.|++|++.|...++|.+|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            67889999999999999999999999999988864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.7e-11  Score=58.68  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=28.7

Q ss_pred             CCCCCccceecCccCccccChHHHHHHHHHhhCC
Q psy4421          36 RPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        36 ~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      ++|++++||.|.+|++.|...+.|..|+++|.++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4678888888888888888888888888888765

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.6e-12  Score=54.98  Aligned_cols=26  Identities=38%  Similarity=0.653  Sum_probs=23.5

Q ss_pred             CceeCCCCcccccCchhHHHHhhhcC
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      +||.|.+||+.|.+.+.|..|+++|.
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999873

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=9.9e-12  Score=55.76  Aligned_cols=26  Identities=27%  Similarity=0.830  Sum_probs=23.4

Q ss_pred             CCceeCCCCcccccCchhHHHHhhhc
Q psy4421         141 DKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |+||+|.+|+++|...+.|.+|+++|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~H   26 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTH   26 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCc
Confidence            68999999999999999999999887

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.11  E-value=2.2e-11  Score=55.25  Aligned_cols=29  Identities=31%  Similarity=0.543  Sum_probs=23.0

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCCC
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      +||.|++|++.|...+.|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            47788888888888888888888888775

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=3.8e-11  Score=56.80  Aligned_cols=32  Identities=25%  Similarity=0.275  Sum_probs=24.5

Q ss_pred             CCCccceecCccCccccChHHHHHHHHHhhCC
Q psy4421          38 DSFKYKYGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        38 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      |+|++||.|.+|++.|...++|.+|+++|+++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            46777888888888888888888888777764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.09  E-value=2.7e-11  Score=54.93  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=24.2

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      +||.|++|++.|...+.|.+|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            47888888888888888888888888875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=3.9e-11  Score=53.77  Aligned_cols=28  Identities=32%  Similarity=0.530  Sum_probs=25.5

Q ss_pred             ccceecCccCccccChHHHHHHHHHhhC
Q psy4421          41 KYKYGCYRCSYFTYESNNLKKHILKHTG   68 (167)
Q Consensus        41 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~   68 (167)
                      ++||.|++|++.|...++|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5789999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.4e-11  Score=54.52  Aligned_cols=29  Identities=34%  Similarity=0.596  Sum_probs=25.5

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      +||.|++|++.|...+.|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            57889999999999999999999999875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.8e-11  Score=54.00  Aligned_cols=29  Identities=28%  Similarity=0.547  Sum_probs=21.9

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCCC
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      +||.|++|++.|..+++|..|+++|+||+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            46777777777777777777777777764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.1e-11  Score=57.13  Aligned_cols=33  Identities=30%  Similarity=0.742  Sum_probs=30.2

Q ss_pred             ccCCC--CCccccCchhHHHHHhhhCCCCceeCCC
Q psy4421         116 FVCYA--CEYNTYMSGNIKTHLRLHLDDKPYKCSL  148 (167)
Q Consensus       116 ~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~  148 (167)
                      |.|+.  |++.|.....|+.|+++|+|++||.|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67765  9999999999999999999999999973

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.7e-10  Score=55.06  Aligned_cols=32  Identities=34%  Similarity=0.538  Sum_probs=26.0

Q ss_pred             CCCCCccceecCccCccccChHHHHHHHHHhh
Q psy4421          36 RPDSFKYKYGCYRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus        36 ~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      ++|+|++||.|++|++.|...++|.+|++.+.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            36788888889889988888888888875543

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.4e-10  Score=50.62  Aligned_cols=26  Identities=27%  Similarity=0.439  Sum_probs=23.1

Q ss_pred             cceecCccCccccChHHHHHHHHHhh
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      +||+|++||+.|...+.|.+|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            58999999999999999999999885

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=5.4e-11  Score=60.32  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=33.9

Q ss_pred             cccCCCCCccceecCc--cCccccChHHHHHHHHHhhCCC
Q psy4421          33 SMVRPDSFKYKYGCYR--CSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        33 ~h~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      .|+. |.+++||.|.+  |++.|...++|.+|+++|+|++
T Consensus         9 ~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           9 KYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            6664 89999999987  9999999999999999999985

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=3.5e-11  Score=61.03  Aligned_cols=35  Identities=20%  Similarity=0.658  Sum_probs=19.2

Q ss_pred             HHHHHhhhCCCCceeCCC--CcccccCchhHHHHhhhc
Q psy4421         131 IKTHLRLHLDDKPYKCSL--CNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       131 l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  166 (167)
                      |..|+. |.|++||.|.+  |+++|...+.|..|+++|
T Consensus         7 l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~H   43 (47)
T d1ncsa_           7 IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             GGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             hcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccc
Confidence            334443 55556666654  666666666666665554

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.3e-09  Score=51.78  Aligned_cols=31  Identities=19%  Similarity=0.441  Sum_probs=28.7

Q ss_pred             eecCc--cCccccChHHHHHHHHHhhCCCCCCc
Q psy4421          44 YGCYR--CSYFTYESNNLKKHILKHTGEKPFSY   74 (167)
Q Consensus        44 ~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~~   74 (167)
                      |.|+.  |++.|.....|.+|+++|+|++||+|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C   34 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC   34 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeC
Confidence            67876  99999999999999999999999993

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.9e-09  Score=48.98  Aligned_cols=28  Identities=29%  Similarity=0.454  Sum_probs=25.7

Q ss_pred             cceecCc--cCccccChHHHHHHHHHhhCC
Q psy4421          42 YKYGCYR--CSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        42 ~~~~C~~--C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      +||.|++  |++.|...+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5899987  999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.5e-09  Score=49.22  Aligned_cols=28  Identities=32%  Similarity=0.433  Sum_probs=18.3

Q ss_pred             CcccCCC--CCccccCchhHHHHHhhhCCC
Q psy4421         114 FKFVCYA--CEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       114 ~~~~C~~--C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      +||.|+.  |++.|...++|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            3566655  666666666666666666664

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.9e-09  Score=48.88  Aligned_cols=28  Identities=36%  Similarity=0.462  Sum_probs=24.5

Q ss_pred             cceecCc--cCccccChHHHHHHHHHhhCC
Q psy4421          42 YKYGCYR--CSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        42 ~~~~C~~--C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      +||.|++  |++.|...+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5788988  999999999999999999885

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=2.9e-09  Score=49.04  Aligned_cols=27  Identities=37%  Similarity=0.736  Sum_probs=20.1

Q ss_pred             CCceeCCC--CcccccCchhHHHHhhhcC
Q psy4421         141 DKPYKCSL--CNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       141 ~~~~~C~~--C~~~f~~~~~l~~H~~~hh  167 (167)
                      |+||.|..  ||++|...+.|.+|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            56777776  7777777777777777763

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.4e-09  Score=48.53  Aligned_cols=29  Identities=28%  Similarity=0.468  Sum_probs=21.5

Q ss_pred             CcccCC--CCCccccCchhHHHHHhhhCCCC
Q psy4421         114 FKFVCY--ACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       114 ~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      +||.|+  .|++.|...++|..|+++|+||+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            467774  58888888888888888887764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.8e-09  Score=49.08  Aligned_cols=27  Identities=33%  Similarity=0.639  Sum_probs=14.1

Q ss_pred             cccCCC--CCccccCchhHHHHHhhhCCC
Q psy4421         115 KFVCYA--CEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       115 ~~~C~~--C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      ||.|+.  |++.|...++|..|+++|+||
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCCC
Confidence            455544  555555555555555555543

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4e-09  Score=48.29  Aligned_cols=29  Identities=34%  Similarity=0.542  Sum_probs=20.9

Q ss_pred             cceecC--ccCccccChHHHHHHHHHhhCCC
Q psy4421          42 YKYGCY--RCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        42 ~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      +||.|+  .|++.|...++|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            467774  47777777777777777777764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.9e-09  Score=47.33  Aligned_cols=26  Identities=38%  Similarity=0.843  Sum_probs=19.4

Q ss_pred             CceeCCC--CcccccCchhHHHHhhhcC
Q psy4421         142 KPYKCSL--CNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~hh  167 (167)
                      +||.|+.  ||++|...++|.+|+++|.
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5777776  7777777777777777763

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=9.9e-09  Score=46.06  Aligned_cols=25  Identities=24%  Similarity=0.801  Sum_probs=22.2

Q ss_pred             CceeCCC--CcccccCchhHHHHhhhc
Q psy4421         142 KPYKCSL--CNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~h  166 (167)
                      +||.|.+  |+++|...+.|.+|+++|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~H   27 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIH   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCcc
Confidence            6899977  999999999999999887

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.9e-08  Score=45.08  Aligned_cols=27  Identities=37%  Similarity=0.584  Sum_probs=23.8

Q ss_pred             cceecCc--cCccccChHHHHHHHHHhhC
Q psy4421          42 YKYGCYR--CSYFTYESNNLKKHILKHTG   68 (167)
Q Consensus        42 ~~~~C~~--C~~~~~~~~~l~~H~~~h~~   68 (167)
                      +||.|++  |++.|...+.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5789977  99999999999999999886

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=5.5e-08  Score=44.61  Aligned_cols=29  Identities=14%  Similarity=0.343  Sum_probs=26.3

Q ss_pred             CCcccCCC--CCccccCchhHHHHHhhhCCC
Q psy4421         113 HFKFVCYA--CEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       113 ~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      |+||.|+.  |++.|...++|..|+++|..+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            57999987  999999999999999999753

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=6.9e-08  Score=41.32  Aligned_cols=26  Identities=27%  Similarity=0.662  Sum_probs=21.7

Q ss_pred             CCceeCCCCcccccCchhHHHHhhhc
Q psy4421         141 DKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |+||.|..||+.|.......+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            57888888888888888888888776

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1e-07  Score=42.19  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=23.9

Q ss_pred             CcccCCC--CCccccCchhHHHHHhhhC
Q psy4421         114 FKFVCYA--CEYNTYMSGNIKTHLRLHL  139 (167)
Q Consensus       114 ~~~~C~~--C~~~~~~~~~l~~H~~~h~  139 (167)
                      +||.|+.  |++.|...++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899977  9999999999999999985

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.3e-07  Score=39.15  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=13.9

Q ss_pred             ccCCCCCccccCchhHHHHHhhhCC
Q psy4421         116 FVCYACEYNTYMSGNIKTHLRLHLD  140 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~~h~~  140 (167)
                      .+|+.|++.|..+..|..|++.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            4555555555555555555555543

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.7e-07  Score=38.15  Aligned_cols=25  Identities=32%  Similarity=0.675  Sum_probs=23.1

Q ss_pred             ceeCCCCcccccCchhHHHHhhhcC
Q psy4421         143 PYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      |.+|+.|++.|+.+..|..|+|.|.
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5789999999999999999999874

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.6e-07  Score=41.02  Aligned_cols=30  Identities=33%  Similarity=0.719  Sum_probs=24.8

Q ss_pred             ceecCccCccccChHHHHHHHHHhhCCCCC
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILKHTGEKPF   72 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~   72 (167)
                      ...|..||+.|.....|.+|...|++++||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            356888888888888888888888888887

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3.4e-07  Score=39.71  Aligned_cols=26  Identities=27%  Similarity=0.820  Sum_probs=17.6

Q ss_pred             CCceeCCCCcccccCchhHHHHhhhc
Q psy4421         141 DKPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |+||.|+.|+.+|..+.-+..|.++|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeecc
Confidence            46677777777777776666666665

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=7.1e-07  Score=38.66  Aligned_cols=26  Identities=38%  Similarity=0.818  Sum_probs=22.6

Q ss_pred             CceeCCC--CcccccCchhHHHHhhhcC
Q psy4421         142 KPYKCSL--CNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~hh  167 (167)
                      +||.|..  |++++...++|++|++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            5888977  9999999999999998776

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=7.8e-07  Score=37.98  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=22.5

Q ss_pred             ccceecCccCccccChHHHHHHHHHhh
Q psy4421          41 KYKYGCYRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus        41 ~~~~~C~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      ++||.|..||+.|.......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            478889999999988888888887774

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.9e-07  Score=40.10  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=28.2

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCCCcee
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDDKPYK  145 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~  145 (167)
                      +...|..||+.|...-.|.+|..+|.||+||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            34679999999999999999999999999983

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7.8e-07  Score=37.68  Aligned_cols=27  Identities=33%  Similarity=0.619  Sum_probs=14.6

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCC
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLD  140 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~  140 (167)
                      +||+|..|.+.-..++.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.3e-07  Score=38.63  Aligned_cols=29  Identities=17%  Similarity=0.327  Sum_probs=26.7

Q ss_pred             CCcccCCCCCccccCchhHHHHHhhhCCC
Q psy4421         113 HFKFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       113 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      ++||.|++|+..|..+..+..|.++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            57999999999999999999999999763

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.06  E-value=1.3e-06  Score=35.67  Aligned_cols=23  Identities=30%  Similarity=0.687  Sum_probs=20.1

Q ss_pred             eeCCCCcccccCchhHHHHhhhc
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |+|..|.++|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            67888999999999999998876

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.5e-06  Score=36.10  Aligned_cols=27  Identities=33%  Similarity=0.968  Sum_probs=25.2

Q ss_pred             CCceeCCCCcccccCchhHHHHhhhcC
Q psy4421         141 DKPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      ++||+|..|.+.-+..++|..|+++|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            589999999999999999999999984

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.6e-06  Score=39.89  Aligned_cols=26  Identities=23%  Similarity=0.534  Sum_probs=21.8

Q ss_pred             CCCCceeCCCCcccccCchhHHHHhh
Q psy4421         139 LDDKPYKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      +|-+||.|..|++.|-+..++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            36789999999999999998888864

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.1e-06  Score=35.61  Aligned_cols=27  Identities=37%  Similarity=0.581  Sum_probs=24.5

Q ss_pred             eecCccCccccChHHHHHHHHHhhCCC
Q psy4421          44 YGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      |.|++|+....-++.|.+|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999999863

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.8e-06  Score=35.75  Aligned_cols=26  Identities=46%  Similarity=0.653  Sum_probs=20.6

Q ss_pred             eecCccCccccChHHHHHHHHHhhCC
Q psy4421          44 YGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      ..|..||+.|...+.|++|+..|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46888888888888888888888764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.3e-06  Score=35.06  Aligned_cols=25  Identities=36%  Similarity=0.931  Sum_probs=21.7

Q ss_pred             CceeCCCCcccccCchhHHHHhhhc
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      +||+|..|.+.-...++|..|+|+|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            6888888988888888888888887

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=5.1e-06  Score=34.94  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=13.0

Q ss_pred             cCCCCCccccCchhHHHHHhhhCC
Q psy4421         117 VCYACEYNTYMSGNIKTHLRLHLD  140 (167)
Q Consensus       117 ~C~~C~~~~~~~~~l~~H~~~h~~  140 (167)
                      .|..||+.|..++.|.+|..+|+|
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            455555555555555555555554

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-05  Score=34.29  Aligned_cols=27  Identities=26%  Similarity=0.624  Sum_probs=20.5

Q ss_pred             ccCCCCCccccCchhHHHHHhhhCCCC
Q psy4421         116 FVCYACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      |.|+.|+......+-|..|++.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            677778877777777888888877763

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.78  E-value=7.8e-06  Score=34.63  Aligned_cols=25  Identities=32%  Similarity=0.627  Sum_probs=20.9

Q ss_pred             CceeCCC--CcccccCchhHHHHhhhc
Q psy4421         142 KPYKCSL--CNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~h  166 (167)
                      .||.|+.  |+++|...+-|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5788875  999999999999988775

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.3e-05  Score=33.56  Aligned_cols=26  Identities=35%  Similarity=0.715  Sum_probs=23.0

Q ss_pred             cceecCccCccccChHHHHHHHHHhh
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      +|++|..|++.....++|.+|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68899999999999999999999875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2.1e-05  Score=33.38  Aligned_cols=23  Identities=43%  Similarity=1.015  Sum_probs=18.7

Q ss_pred             ceeCCCCcccccCchhHHHHhhh
Q psy4421         143 PYKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      ||.|..|...|..+.+|..|+++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            67888888888888888888765

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=3e-05  Score=32.81  Aligned_cols=28  Identities=18%  Similarity=0.374  Sum_probs=21.9

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCC
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      ..|.|..|...|..+-.|+.|+..|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            4577888888888888888888888764

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.57  E-value=1.8e-05  Score=32.18  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=16.8

Q ss_pred             eecCccCccccChHHHHHHHHHhh
Q psy4421          44 YGCYRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      |+|..|.+.|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            467777777777777777776653

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=4.1e-05  Score=32.63  Aligned_cols=26  Identities=35%  Similarity=0.653  Sum_probs=20.7

Q ss_pred             cceecCccCccccChHHHHHHHHHhh
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      +||.|.+|.+.....++|..|+++.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            47888888888888888888887643

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.1e-05  Score=34.23  Aligned_cols=25  Identities=24%  Similarity=0.587  Sum_probs=22.1

Q ss_pred             CceeCCC--CcccccCchhHHHHh-hhc
Q psy4421         142 KPYKCSL--CNYECRQNVHLKSHM-KSN  166 (167)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~-~~h  166 (167)
                      +||.|..  |.+.|+..++-.+|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            6899987  999999999999998 766

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.7e-05  Score=33.21  Aligned_cols=26  Identities=35%  Similarity=0.927  Sum_probs=15.7

Q ss_pred             CceeCCCCcccccCchhHHHHhhhcC
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMKSNH  167 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~hh  167 (167)
                      +||.|.+|.++-...++|..|+++.|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            45666666666666666666665543

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=5.7e-05  Score=31.17  Aligned_cols=26  Identities=42%  Similarity=0.516  Sum_probs=23.4

Q ss_pred             ecCccCccccChHHHHHHHHHhhCCC
Q psy4421          45 GCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        45 ~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      +|+.|.+.|.++..|.-|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            58999999999999999999999875

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3e-05  Score=33.45  Aligned_cols=27  Identities=15%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             CcccCCC--CCccccCchhHHHHHhhhCC
Q psy4421         114 FKFVCYA--CEYNTYMSGNIKTHLRLHLD  140 (167)
Q Consensus       114 ~~~~C~~--C~~~~~~~~~l~~H~~~h~~  140 (167)
                      +||.|.+  |++.+...++|+.|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4788866  99999999999999997654

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=2.5e-05  Score=33.22  Aligned_cols=24  Identities=38%  Similarity=1.016  Sum_probs=16.2

Q ss_pred             CceeCCCCcccccCchhHHHHhhh
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      +||+|..|...-.+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            467777777666677777777654

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.43  E-value=5.3e-05  Score=32.96  Aligned_cols=24  Identities=33%  Similarity=0.639  Sum_probs=18.3

Q ss_pred             ceeCCCCcccccCchhHHHHhhhc
Q psy4421         143 PYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      ||.|..|++.|..+.-|.+|++.-
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKl   24 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKI   24 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTT
T ss_pred             CcccccccchhhHHHHHHHHHHHH
Confidence            677888888888888777777643

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=7.7e-05  Score=30.76  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=21.4

Q ss_pred             cCCCCCccccCchhHHHHHhhhCCCC
Q psy4421         117 VCYACEYNTYMSGNIKTHLRLHLDDK  142 (167)
Q Consensus       117 ~C~~C~~~~~~~~~l~~H~~~h~~~~  142 (167)
                      +|+.|.+.|.++-.|..|-+.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            58888888888888888888888874

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.40  E-value=5.5e-05  Score=35.06  Aligned_cols=25  Identities=36%  Similarity=0.759  Sum_probs=17.9

Q ss_pred             CceeCCCCcccccCchhHHHHhhhc
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      +.|.|.+|++.|.+.-+|--|++.|
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTT
T ss_pred             CccCCCCCCCccCCcccccchHhhh
Confidence            4577777777777777777777665

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00011  Score=31.19  Aligned_cols=27  Identities=37%  Similarity=0.673  Sum_probs=22.9

Q ss_pred             cceecCccCccccChHHHHHHHHHhhC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTG   68 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~   68 (167)
                      +||+|..|.......++|..|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            479999999999999999999965443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=6.4e-05  Score=34.60  Aligned_cols=26  Identities=31%  Similarity=0.689  Sum_probs=15.7

Q ss_pred             CCceeCCC--CcccccCchhHHHHhhhc
Q psy4421         141 DKPYKCSL--CNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       141 ~~~~~C~~--C~~~f~~~~~l~~H~~~h  166 (167)
                      ++||.|..  |+.+|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            56666633  666666666666665543

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=5.8e-05  Score=35.22  Aligned_cols=25  Identities=12%  Similarity=0.232  Sum_probs=22.9

Q ss_pred             CCCcccCCCCCccccCchhHHHHHh
Q psy4421         112 FHFKFVCYACEYNTYMSGNIKTHLR  136 (167)
Q Consensus       112 ~~~~~~C~~C~~~~~~~~~l~~H~~  136 (167)
                      |-+||.|.+|++.|..+.++.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            5689999999999999999999965

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00012  Score=31.03  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=19.9

Q ss_pred             ceecCccCccccChHHHHHHHHH
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILK   65 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~   65 (167)
                      ||.|..|...|..+.+|.+|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            58899999999999999999875

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.0001  Score=30.67  Aligned_cols=24  Identities=13%  Similarity=0.325  Sum_probs=14.9

Q ss_pred             cccccccccccCchHHHHHHhhhh
Q psy4421           7 INQCVHCHLTLTKSTEVIVKHAQT   30 (167)
Q Consensus         7 ~~~C~~C~~~f~~~~~l~~~~~~~   30 (167)
                      ||.|..||+.+..+.+|.+|+|.+
T Consensus         1 pf~c~kcgkcyfrkenllehearn   24 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEARN   24 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCccccchhhhhhHhHHHHHHHHh
Confidence            566666666666666666555443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.14  E-value=0.00011  Score=31.87  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=19.0

Q ss_pred             ceecCccCccccChHHHHHHHH-HhhC
Q psy4421          43 KYGCYRCSYFTYESNNLKKHIL-KHTG   68 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~-~h~~   68 (167)
                      ||.|..|++.|....-|.+|++ .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            5778888888888887777774 3544

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.13  E-value=0.00023  Score=32.89  Aligned_cols=29  Identities=21%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             cceecCccCccccChHHHHHHHHHhhCCC
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHILKHTGEK   70 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~   70 (167)
                      +.|.|..|++.|.+...|--|++.|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            44777777777777777777777776543

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00022  Score=28.88  Aligned_cols=22  Identities=50%  Similarity=0.881  Sum_probs=12.6

Q ss_pred             ceeCCCCcccccCchhHHHHhh
Q psy4421         143 PYKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      ||+|+.|...|-++-+|..|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555553

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.91  E-value=0.00052  Score=28.88  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=18.8

Q ss_pred             ceecCc--cCccccChHHHHHHHHHh
Q psy4421          43 KYGCYR--CSYFTYESNNLKKHILKH   66 (167)
Q Consensus        43 ~~~C~~--C~~~~~~~~~l~~H~~~h   66 (167)
                      ||.|+.  |++.|...+.|.+|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            577764  888888888888888776

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00038  Score=29.06  Aligned_cols=25  Identities=24%  Similarity=0.539  Sum_probs=17.9

Q ss_pred             cccCCCCCccccCchhHHHHHhhhC
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRLHL  139 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~h~  139 (167)
                      |-+|+.|.++..++..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            3467777777777777777777764

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00018  Score=31.19  Aligned_cols=27  Identities=26%  Similarity=0.394  Sum_probs=18.3

Q ss_pred             cceecCc--cCccccChHHHHHHH-HHhhC
Q psy4421          42 YKYGCYR--CSYFTYESNNLKKHI-LKHTG   68 (167)
Q Consensus        42 ~~~~C~~--C~~~~~~~~~l~~H~-~~h~~   68 (167)
                      +||.|..  |.+.|.+.+.-.+|+ ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            3666765  777777777777776 66654

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00078  Score=28.34  Aligned_cols=27  Identities=30%  Similarity=0.560  Sum_probs=18.8

Q ss_pred             ceecCccCccccChHHHHHHHHHhhCC
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      -|.|..|...|...-.|+.|+-.|+|+
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccCC
Confidence            366777777777777777777777664

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.79  E-value=0.00077  Score=28.46  Aligned_cols=28  Identities=32%  Similarity=0.522  Sum_probs=23.0

Q ss_pred             cceecC--ccCccccChHHHHHHHHHhhCC
Q psy4421          42 YKYGCY--RCSYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        42 ~~~~C~--~C~~~~~~~~~l~~H~~~h~~~   69 (167)
                      +||.|.  -|++.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            467775  4889999999999999988875

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0006  Score=28.44  Aligned_cols=24  Identities=38%  Similarity=0.861  Sum_probs=22.3

Q ss_pred             ceeCCCCcccccCchhHHHHhhhc
Q psy4421         143 PYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      |-+|+.|.++.+++..|+.|.|+|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            678999999999999999999987

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00034  Score=28.30  Aligned_cols=22  Identities=14%  Similarity=0.519  Sum_probs=20.4

Q ss_pred             cccCCCCCccccCchhHHHHHh
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLR  136 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~  136 (167)
                      ||+|..|...|.++..|..|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999975

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00055  Score=30.36  Aligned_cols=22  Identities=18%  Similarity=0.475  Sum_probs=19.1

Q ss_pred             ceeCCCCcccccCchhHHHHhh
Q psy4421         143 PYKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      .|.|+.||+.|..+..+.+|..
T Consensus         4 afvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhh
Confidence            5899999999999999988864

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.49  E-value=0.0007  Score=29.70  Aligned_cols=23  Identities=17%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             CceeCCCCcccccCchhHHHHhh
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      ..|.|.-||-+|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            45888889999998888888874

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.45  E-value=0.00094  Score=27.06  Aligned_cols=22  Identities=27%  Similarity=0.661  Sum_probs=14.8

Q ss_pred             eeCCCCcccccCchhHHHHhhh
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      |.|+.|-+.|..+.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            5667777777777777666654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0016  Score=26.90  Aligned_cols=21  Identities=24%  Similarity=0.613  Sum_probs=16.6

Q ss_pred             ceecCccCccccChHHHHHHH
Q psy4421          43 KYGCYRCSYFTYESNNLKKHI   63 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~   63 (167)
                      ||+|..||+.+..+.+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            577888888888888887775

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.27  E-value=0.0015  Score=27.55  Aligned_cols=25  Identities=28%  Similarity=0.573  Sum_probs=19.3

Q ss_pred             CceeCCC--CcccccCchhHHHHhhhc
Q psy4421         142 KPYKCSL--CNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       142 ~~~~C~~--C~~~f~~~~~l~~H~~~h  166 (167)
                      +||.|.+  |.+.|.+.-.|.+|..+|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~th   27 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTH   27 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhccc
Confidence            4777865  888888888888887665

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0046  Score=28.25  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=21.6

Q ss_pred             Cccceec--CccCccccChHHHHHHHHHhh
Q psy4421          40 FKYKYGC--YRCSYFTYESNNLKKHILKHT   67 (167)
Q Consensus        40 ~~~~~~C--~~C~~~~~~~~~l~~H~~~h~   67 (167)
                      .++||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4678888  558888888888888887765

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0044  Score=25.63  Aligned_cols=22  Identities=18%  Similarity=0.593  Sum_probs=13.8

Q ss_pred             eeCCCCcccccCchhHHHHhhh
Q psy4421         144 YKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      |.|+.|+-....+++|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            5566666666666666666654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0046  Score=29.70  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=22.5

Q ss_pred             ceecCccCccccChHHHHHHHHHhhC
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILKHTG   68 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~h~~   68 (167)
                      -|.|..|++.|.....|++|...|-.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeeccccccccCCHHHHhHhHHhcCc
Confidence            37899999999999999999887753

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0045  Score=25.79  Aligned_cols=18  Identities=22%  Similarity=0.601  Sum_probs=15.6

Q ss_pred             CcccccCchhHHHHhhhc
Q psy4421         149 CNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       149 C~~~f~~~~~l~~H~~~h  166 (167)
                      |++.|+..+.+++|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            888999999999988776

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0037  Score=30.04  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=10.1

Q ss_pred             ccCCCCCccccCchhHHHHHh
Q psy4421         116 FVCYACEYNTYMSGNIKTHLR  136 (167)
Q Consensus       116 ~~C~~C~~~~~~~~~l~~H~~  136 (167)
                      |.|..|++.|.....|+.|..
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEA   27 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEA   27 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHH
T ss_pred             eeccccccccCCHHHHhHhHH
Confidence            444455555555444444433

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0093  Score=26.26  Aligned_cols=26  Identities=19%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             ceecCccCccccChHHHHHHHHHhhC
Q psy4421          43 KYGCYRCSYFTYESNNLKKHILKHTG   68 (167)
Q Consensus        43 ~~~C~~C~~~~~~~~~l~~H~~~h~~   68 (167)
                      .|.|..|+++|.....+.+|...-.|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            48899999999999888888765444

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.18  E-value=0.0058  Score=24.63  Aligned_cols=23  Identities=17%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             cccCCCCCccccCchhHHHHHhh
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRL  137 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~  137 (167)
                      .|.|+.|-+.|..+.++..|.++
T Consensus         1 vypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEE
Confidence            37899999999999999999764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.017  Score=25.63  Aligned_cols=20  Identities=30%  Similarity=0.217  Sum_probs=16.7

Q ss_pred             CccccChHHHHHHHHHhhCC
Q psy4421          50 SYFTYESNNLKKHILKHTGE   69 (167)
Q Consensus        50 ~~~~~~~~~l~~H~~~h~~~   69 (167)
                      ++.|.....|..|++.|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            45688889999999999886

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.0054  Score=32.40  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=15.9

Q ss_pred             CceeCCCCcccccCchhHHHHhhh
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      ..|.|..|++.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            346677777777777777766654

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.98  E-value=0.018  Score=23.54  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=17.0

Q ss_pred             eeCC--CCcccccCchhHHHHhhhc
Q psy4421         144 YKCS--LCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       144 ~~C~--~C~~~f~~~~~l~~H~~~h  166 (167)
                      |.|.  .|++.|....+|..|+-+|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            5564  3888888888888887665

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.014  Score=25.99  Aligned_cols=21  Identities=14%  Similarity=0.009  Sum_probs=15.7

Q ss_pred             CCccccCchhHHHHHhhhCCC
Q psy4421         121 CEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       121 C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      -++.|...-.|..|+|+|+||
T Consensus        13 ~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          13 ELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCcchhHHHHHHHHhhcCCC
Confidence            345677777888888888875

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.69  E-value=0.013  Score=27.00  Aligned_cols=25  Identities=28%  Similarity=0.871  Sum_probs=17.3

Q ss_pred             CcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcc
Q psy4421         114 FKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY  151 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  151 (167)
                      +.|.|++||..+             .|+.|-.|+.||.
T Consensus         4 ~~~~C~vCG~i~-------------~g~~P~~CPvCg~   28 (37)
T d1nnqa2           4 KVYICPICGYTA-------------VDEAPEYCPVCGA   28 (37)
T ss_dssp             CEEECTTTCCEE-------------ESCCCSBCTTTCC
T ss_pred             cEEECCCCCCEe-------------cCCCCCcCCCCCC
Confidence            467888888763             3456677888874

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.015  Score=30.11  Aligned_cols=13  Identities=23%  Similarity=0.480  Sum_probs=6.4

Q ss_pred             ceecCccCccccC
Q psy4421          43 KYGCYRCSYFTYE   55 (167)
Q Consensus        43 ~~~C~~C~~~~~~   55 (167)
                      .|.|+.|++.|..
T Consensus        14 ~y~Cp~C~~~ys~   26 (62)
T d1vd4a_          14 SFKCPVCSSTFTD   26 (62)
T ss_dssp             EEECSSSCCEEEH
T ss_pred             ceECCCCCCCcch
Confidence            3555555555443

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=93.01  E-value=0.021  Score=26.08  Aligned_cols=26  Identities=23%  Similarity=0.484  Sum_probs=17.2

Q ss_pred             CCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcc
Q psy4421         113 HFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNY  151 (167)
Q Consensus       113 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  151 (167)
                      ++.|.|++||...             .|+.|-+|+.||.
T Consensus         3 ~~~~vC~vCGyi~-------------~g~~Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGYIH-------------KGEDFEKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCCEE-------------ESSCCSBCTTTCC
T ss_pred             CCEEECCCCCCEe-------------eCCCCCcCCCCCC
Confidence            3457788888662             3455667888874

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.084  Score=22.00  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=18.1

Q ss_pred             cccCCCCCccccCchhHHHHHhh
Q psy4421         115 KFVCYACEYNTYMSGNIKTHLRL  137 (167)
Q Consensus       115 ~~~C~~C~~~~~~~~~l~~H~~~  137 (167)
                      .|.|..|++...+...++.|...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            47788888888888888888543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.84  E-value=0.029  Score=24.72  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=10.1

Q ss_pred             CcccCCCCCccccCchhHHHH
Q psy4421         114 FKFVCYACEYNTYMSGNIKTH  134 (167)
Q Consensus       114 ~~~~C~~C~~~~~~~~~l~~H  134 (167)
                      ..|.|.+|.+.+...+++-+|
T Consensus         7 ~~yRC~~C~r~YTHISNFCRH   27 (37)
T d2drpa1           7 HTYRCKVCSRVYTHISNFCRH   27 (37)
T ss_dssp             TEEECTTTCCEESSHHHHHHH
T ss_pred             cEEEeehhhHHHHHHHHHHHH
Confidence            344444454444444444444

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.11  Score=21.61  Aligned_cols=23  Identities=17%  Similarity=0.476  Sum_probs=16.4

Q ss_pred             eecCccCccccChHHHHHHHHHh
Q psy4421          44 YGCYRCSYFTYESNNLKKHILKH   66 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~~h   66 (167)
                      |.|..||+...+...++-|.-..
T Consensus         3 ftc~hcgkqlks~~gmkyhvmad   25 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMAN   25 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEeec
Confidence            66777777777777777776543

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.40  E-value=0.053  Score=25.81  Aligned_cols=28  Identities=25%  Similarity=0.288  Sum_probs=17.3

Q ss_pred             CCCcccCCCCCccccCchhHHHHHhhhC
Q psy4421         112 FHFKFVCYACEYNTYMSGNIKTHLRLHL  139 (167)
Q Consensus       112 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~  139 (167)
                      .+.|..|++|+....++-+|++|...-+
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            3455666666666666666666655443

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.05  E-value=0.13  Score=24.41  Aligned_cols=26  Identities=27%  Similarity=0.663  Sum_probs=20.6

Q ss_pred             CCCceeCCCCcccccCchhHHHHhhh
Q psy4421         140 DDKPYKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       140 ~~~~~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      .++|-.|+.|+...++..+|++|+..
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            36788888888888888888888754

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.77  E-value=0.064  Score=23.24  Aligned_cols=22  Identities=18%  Similarity=0.431  Sum_probs=17.1

Q ss_pred             cceecCccCccccChHHHHHHH
Q psy4421          42 YKYGCYRCSYFTYESNNLKKHI   63 (167)
Q Consensus        42 ~~~~C~~C~~~~~~~~~l~~H~   63 (167)
                      ..|.|.-||-.|.+.+.|..|+
T Consensus         7 arf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cceeccccceeecChhHHHhhh
Confidence            3477888888888888887775

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.031  Score=28.84  Aligned_cols=39  Identities=15%  Similarity=0.341  Sum_probs=27.6

Q ss_pred             CCCcccCCCCCccccCchhHHHHHhhhCCCCceeCCCCcccc
Q psy4421         112 FHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYEC  153 (167)
Q Consensus       112 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f  153 (167)
                      ....|.|+.|++.|.....++-   .-.....|.|..|+--.
T Consensus        11 ~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~el   49 (62)
T d1vd4a_          11 NRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             SSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCBC
T ss_pred             cCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCEE
Confidence            3457999999999887665432   34445679999998543

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.14  Score=21.24  Aligned_cols=17  Identities=24%  Similarity=0.280  Sum_probs=11.8

Q ss_pred             CcccccCchhHHHHhhh
Q psy4421         149 CNYECRQNVHLKSHMKS  165 (167)
Q Consensus       149 C~~~f~~~~~l~~H~~~  165 (167)
                      ||+.|+.+-.|..|.+-
T Consensus         8 c~kifsnrqylnhh~ky   24 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TCCEESSHHHHHHHHHH
T ss_pred             chhhhccHHHHHhHHHH
Confidence            77777777777766653

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.09  E-value=0.15  Score=26.08  Aligned_cols=23  Identities=26%  Similarity=0.687  Sum_probs=13.3

Q ss_pred             ceeCCCCcccccCchhHHHHhhh
Q psy4421         143 PYKCSLCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~  165 (167)
                      .|.|..|...|-+...|..|+..
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~   40 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNI   40 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHh
Confidence            35666666666666666555544

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.98  E-value=0.092  Score=23.35  Aligned_cols=20  Identities=20%  Similarity=0.371  Sum_probs=16.9

Q ss_pred             eCCCCcccccCchhHHHHhh
Q psy4421         145 KCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       145 ~C~~C~~~f~~~~~l~~H~~  164 (167)
                      -|..|+-+|.+.+.+..|.+
T Consensus        10 YC~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_          10 YCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             EETTTTEECSSHHHHHHHHH
T ss_pred             HHhhCCceehhHHHHHHHHH
Confidence            48889999999998888875

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.78  E-value=0.19  Score=20.83  Aligned_cols=23  Identities=17%  Similarity=0.600  Sum_probs=16.2

Q ss_pred             ceeCC--CCcccccCchhHHHHhhh
Q psy4421         143 PYKCS--LCNYECRQNVHLKSHMKS  165 (167)
Q Consensus       143 ~~~C~--~C~~~f~~~~~l~~H~~~  165 (167)
                      .|.|.  .|..+|..+.++..|...
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHH
T ss_pred             CccccCCCcceEEeehHHHHHHHhh
Confidence            45664  378888888888887754

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.44  E-value=0.093  Score=27.45  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=13.1

Q ss_pred             eecCccCccccChHHHHHHHH
Q psy4421          44 YGCYRCSYFTYESNNLKKHIL   64 (167)
Q Consensus        44 ~~C~~C~~~~~~~~~l~~H~~   64 (167)
                      |-|..|++.|.+...|..|.+
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            556666666666666666653

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.77  E-value=0.12  Score=21.85  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=13.4

Q ss_pred             CCCccccCchhHHHHHhhhCCC
Q psy4421         120 ACEYNTYMSGNIKTHLRLHLDD  141 (167)
Q Consensus       120 ~C~~~~~~~~~l~~H~~~h~~~  141 (167)
                      .|+-.|.....|..|+-.|+||
T Consensus        10 dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1          10 DCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             GGCCEESSHHHHHHHHHHHHCC
T ss_pred             CcchhhccchhhhHHhhhhcCC
Confidence            4666666666666666666553

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.09  E-value=0.22  Score=22.04  Aligned_cols=21  Identities=14%  Similarity=0.309  Sum_probs=16.7

Q ss_pred             eeCCCCcccccCchhHHHHhh
Q psy4421         144 YKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      ..|-.|-++|.+..++++|+-
T Consensus         4 ltclecmrtfkssfsiwrhqv   24 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQV   24 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhh
Confidence            457788888888888888874

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=82.84  E-value=0.29  Score=30.28  Aligned_cols=38  Identities=18%  Similarity=0.468  Sum_probs=25.4

Q ss_pred             chhHHHHHhhhC--CC-----CceeCCCCcccccCchhHHHHhhhc
Q psy4421         128 SGNIKTHLRLHL--DD-----KPYKCSLCNYECRQNVHLKSHMKSN  166 (167)
Q Consensus       128 ~~~l~~H~~~h~--~~-----~~~~C~~C~~~f~~~~~l~~H~~~h  166 (167)
                      .+.|..|.+...  |.     +-|+|..||+ +..-.+|.+|++.|
T Consensus       124 GgrlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~H  168 (218)
T d2czra1         124 GAALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREH  168 (218)
T ss_dssp             HHHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTT
T ss_pred             hHHHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHHc
Confidence            356777766432  22     2378888887 66667888888775

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.07  E-value=0.71  Score=20.18  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=13.8

Q ss_pred             CceeCCCCcccccCchhHHHHhh
Q psy4421         142 KPYKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      +.|.|+.|=+-..+...|.+|+.
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHH
Confidence            34666666666666666666654

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.68  E-value=0.3  Score=23.23  Aligned_cols=21  Identities=19%  Similarity=0.624  Sum_probs=14.8

Q ss_pred             eeCCCCcccccCchhHHHHhh
Q psy4421         144 YKCSLCNYECRQNVHLKSHMK  164 (167)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~  164 (167)
                      -.|.+|+..++.+.+++.|+-
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccCcccceeeeeecchHhhhh
Confidence            467777777777777777663

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.75  E-value=1.3  Score=22.46  Aligned_cols=28  Identities=21%  Similarity=0.424  Sum_probs=23.7

Q ss_pred             ccceecCccCccccChHHHHHHHHHhhC
Q psy4421          41 KYKYGCYRCSYFTYESNNLKKHILKHTG   68 (167)
Q Consensus        41 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~   68 (167)
                      ...|+|..|+-.|-+...|..|...|..
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhccH
Confidence            3459999999999999999999887753

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.40  E-value=0.55  Score=18.68  Aligned_cols=18  Identities=17%  Similarity=0.373  Sum_probs=11.6

Q ss_pred             eCCCCcccccCchhHHHH
Q psy4421         145 KCSLCNYECRQNVHLKSH  162 (167)
Q Consensus       145 ~C~~C~~~f~~~~~l~~H  162 (167)
                      .|++|..+|.+..--..|
T Consensus         2 vcpycslrf~sp~lk~eh   19 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEH   19 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHh
Confidence            477788777766544444