Psyllid ID: psy4627

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MSDVDHSPYTEVDENKSETIYRSENMDMYGVKNENPEISVNVEKDIPEDNLDHNLNSKNLLILEQMKSETAHPYLTDYFYTEVDQNKSENIYRSENLDMYGTLVKTEKPEEENYYMDEGDIMNNKRRKRSISSSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAFSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEccccccEEEEccccccccccccccEEEEEEcccccccccccccccHHHHHHccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHcEEEEcc
Coil and Loop (DISEMBL)
msdvdhspytevdenksetiyrsenmdmygvknenpeisvnvekdipednldhnlnskNLLILEQMKsetahpyltdyfytevdqnkseniyrsenldmYGTLvktekpeeenyymdegdimnnkrrkrsissssksssgdmkirrkypqtygeLHSQRILANVRERQRTQSLNEAFTSLRKlipalpsdklskiQTLKLASRYIHFLCEIlhgsedgdgnnteivdqdrelfngispggpnfesnnsnmklTINNYNMAHEKLSYAFSV
Flexible Loop (DISEMBL)
msdvdhspytevdenksetiyrsenMDMYGVKNENPEISVNVEKDIPEDNLDHNLNSKNLLILEQMKSETAHPYLTDYFYTEVDQNKSeniyrsenldmyGTLVKtekpeeenyymdegdimnnkrrkrsissssksssgdmkirRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRklipalpsdklSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAFSV
Low Complexity Region (SEG)
MSDVDHSPYTEVDENKSETIYRSENMDMYGVKNENPEISVNVEKDIPEDNLDHNLNSKNLLILEQMKSETAHPYLTDYFYTEVDQNKSENIYRSENLDMYGTLVKTEKPEEENYYMDEGDIMNNkrrkrsissssksssGDMKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAFSV
Disordered region (IsUnstruct)
**********************************************************NLLILEQMKSETAHPYLTDYFYTEVDQNKSENIYRSENLDMYGTLV************************************************************************FTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG********************************************************
Disordered Region (DISOPRED)
******S*************************************************************************************************************************************************************RERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEIL******************************************************AFS*
Disordered Region (DISEMBL)
*************ENKSETIYRSENMDMYGVKNENPEISVNVEKDIPEDNLDHNLNSKNLLILEQMKSETAHPYLTDYFYTEVDQNKSENIYRSENLDMYGTLVKTEKPEEENYYMDEGDIMNN*******************IRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAFSV
Disordered Region (DISPRO)
******SPYTEVDENKSETIYRSENMDMYGVKNENPEISVNVEKDIPEDNLDHNLNSKNLLILEQMKSETAHPYLTDYFYT*************************************************************************LHSQR*****R**QRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGS************************************LTINNYNMAHEKLSYAFSV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDVDHSPYTEVDENKSETIYRSENMDMYGVKNENPEISVNVEKDIPEDNLDHNLNSKNLLILEQMKSETAHPYLTDYFYTEVDQNKSENIYRSENLDMYGTLVKTEKPEEENYYMDEGDIMNNKRRKRSISSSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAFSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
P13903	166	Twist-related protein OS=	N/A	N/A	0.333	0.542	0.532	8e-28
P26687	206	Twist-related protein 1 O	yes	N/A	0.333	0.436	0.508	2e-25
Q8MID5	199	Twist-related protein 1 O	N/A	N/A	0.444	0.603	0.447	2e-25
Q8MIF3	198	Twist-related protein 1 O	N/A	N/A	0.444	0.606	0.447	2e-25
Q8MIB5	203	Twist-related protein 1 O	N/A	N/A	0.333	0.443	0.508	2e-25
Q8MIB9	203	Twist-related protein 1 O	N/A	N/A	0.333	0.443	0.508	2e-25
Q7JGP2	201	Twist-related protein 1 O	N/A	N/A	0.333	0.447	0.508	2e-25
Q15672	202	Twist-related protein 1 O	yes	N/A	0.333	0.445	0.508	2e-25
Q8MIH8	207	Twist-related protein 1 O	N/A	N/A	0.333	0.434	0.508	2e-25
P97831	160	Twist-related protein 2 O	no	N/A	0.433	0.731	0.470	4e-25

>sp|P13903|TWIST_XENLA Twist-related protein OS=Xenopus laevis GN=twist1 PE=2 SV=1

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 80/122 (65%), Gaps = 32/122 (26%)

Query: 149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           PQ++ EL SQR++ANVRERQRTQSLNEAF+SLRK+IP LPSDKLSKIQTLKLASRYI FL
Sbjct: 64  PQSFEELQSQRVMANVRERQRTQSLNEAFSSLRKIIPTLPSDKLSKIQTLKLASRYIDFL 123

Query: 209 CEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAF 268
           C++L                               +S+  + K+   +Y +AHE+LSYAF
Sbjct: 124 CQVL-------------------------------QSDELDSKMASCSY-VAHERLSYAF 151

Query: 269 SV 270
           SV
Sbjct: 152 SV 153

Probable transcription factor, which may be involved, with other proteins, in establishing the pattern of cell type-specific gene expression in mesodermal cell subgroups.
Xenopus laevis (taxid: 8355)

>sp|P26687|TWST1_MOUSE Twist-related protein 1 OS=Mus musculus GN=Twist1 PE=1 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 78/122 (63%), Gaps = 32/122 (26%)

Query: 149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct: 104 PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 163

Query: 209 CEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAF 268
            ++L                               +S+  + K+   +Y +AHE+LSYAF
Sbjct: 164 YQVL-------------------------------QSDELDSKMASCSY-VAHERLSYAF 191

Query: 269 SV 270
           SV
Sbjct: 192 SV 193

Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of proinflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation.

Mus musculus (taxid: 10090)

>sp|Q8MID5|TWST1_MICMU Twist-related protein 1 OS=Microcebus murinus GN=TWIST1 PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 86/152 (56%), Gaps = 32/152 (21%)

Query: 119 GDIMNNKRRKRSISSSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFT 178
           G     KR K+S      +  G        PQ+Y EL +QR++ANVRERQRTQSLNEAF 
Sbjct: 67  GSPAQGKRGKKSAGCGGGAGGGGSSSGGGSPQSYEELQTQRVMANVRERQRTQSLNEAFA 126

Query: 179 SLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISP 238
           +LRK+IP LPSDKLSKIQTLKLA+RYI FL ++L                          
Sbjct: 127 ALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL-------------------------- 160

Query: 239 GGPNFESNNSNMKLTINNYNMAHEKLSYAFSV 270
                +S+  + K+   +Y +AHE+LSYAFSV
Sbjct: 161 -----QSDELDSKMASCSY-VAHERLSYAFSV 186

Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of proinflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation.

Microcebus murinus (taxid: 30608)

>sp|Q8MIF3|TWST1_EULFU Twist-related protein 1 OS=Eulemur fulvus fulvus GN=TWIST1 PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 86/152 (56%), Gaps = 32/152 (21%)

Query: 119 GDIMNNKRRKRSISSSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFT 178
           G     KR K+S      +  G        PQ+Y EL +QR++ANVRERQRTQSLNEAF 
Sbjct: 66  GSPAQGKRGKKSAGCGGGAGGGGSSSGGGSPQSYEELQTQRVMANVRERQRTQSLNEAFA 125

Query: 179 SLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISP 238
           +LRK+IP LPSDKLSKIQTLKLA+RYI FL ++L                          
Sbjct: 126 ALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL-------------------------- 159

Query: 239 GGPNFESNNSNMKLTINNYNMAHEKLSYAFSV 270
                +S+  + K+   +Y +AHE+LSYAFSV
Sbjct: 160 -----QSDELDSKMASCSY-VAHERLSYAFSV 185

Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of proinflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation.

Eulemur fulvus fulvus (taxid: 40322)

>sp|Q8MIB5|TWST1_SAGOE Twist-related protein 1 OS=Saguinus oedipus GN=TWIST1 PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 78/122 (63%), Gaps = 32/122 (26%)

Query: 149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct: 101 PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 160

Query: 209 CEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAF 268
            ++L                               +S+  + K+   +Y +AHE+LSYAF
Sbjct: 161 YQVL-------------------------------QSDELDSKMASCSY-VAHERLSYAF 188

Query: 269 SV 270
           SV
Sbjct: 189 SV 190

Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of proinflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation.

Saguinus oedipus (taxid: 9490)

>sp|Q8MIB9|TWST1_PONPY Twist-related protein 1 OS=Pongo pygmaeus GN=TWIST1 PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 78/122 (63%), Gaps = 32/122 (26%)

Query: 149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct: 101 PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 160

Query: 209 CEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAF 268
            ++L                               +S+  + K+   +Y +AHE+LSYAF
Sbjct: 161 YQVL-------------------------------QSDELDSKMASCSY-VAHERLSYAF 188

Query: 269 SV 270
           SV
Sbjct: 189 SV 190

Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of proinflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation.

Pongo pygmaeus (taxid: 9600)

>sp|Q7JGP2|TWST1_MACTO Twist-related protein 1 OS=Macaca tonkeana GN=TWIST1 PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 78/122 (63%), Gaps = 32/122 (26%)

Query: 149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct: 99  PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 158

Query: 209 CEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAF 268
            ++L                               +S+  + K+   +Y +AHE+LSYAF
Sbjct: 159 YQVL-------------------------------QSDELDSKMASCSY-VAHERLSYAF 186

Query: 269 SV 270
           SV
Sbjct: 187 SV 188

Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of proinflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation.

Macaca tonkeana (taxid: 40843)

>sp|Q15672|TWST1_HUMAN Twist-related protein 1 OS=Homo sapiens GN=TWIST1 PE=1 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 78/122 (63%), Gaps = 32/122 (26%)

Query: 149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct: 100 PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 159

Query: 209 CEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAF 268
            ++L                               +S+  + K+   +Y +AHE+LSYAF
Sbjct: 160 YQVL-------------------------------QSDELDSKMASCSY-VAHERLSYAF 187

Query: 269 SV 270
           SV
Sbjct: 188 SV 189

Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of proinflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation.

Homo sapiens (taxid: 9606)

>sp|Q8MIH8|TWST1_CEBCA Twist-related protein 1 OS=Cebus capucinus GN=TWIST1 PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 78/122 (63%), Gaps = 32/122 (26%)

Query: 149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct: 105 PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 164

Query: 209 CEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAF 268
            ++L                               +S+  + K+   +Y +AHE+LSYAF
Sbjct: 165 YQVL-------------------------------QSDELDSKMASCSY-VAHERLSYAF 192

Query: 269 SV 270
           SV
Sbjct: 193 SV 194

Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of proinflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation.

Cebus capucinus (taxid: 9516)

>sp|P97831|TWST2_RAT Twist-related protein 2 OS=Rattus norvegicus GN=Twist2 PE=2 SV=2

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 89/151 (58%), Gaps = 34/151 (22%)

Query: 122 MNNKRRKRSISSSSKSSSGDMKIRRKYP--QTYGELHSQRILANVRERQRTQSLNEAFTS 179
              KRR    SS   S +   + ++  P  Q++ EL SQRILANVRERQRTQSLNEAF +
Sbjct: 29  FGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAA 88

Query: 180 LRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPG 239
           LRK+IP LPSDKLSKIQTLKLA+RYI FL ++L                           
Sbjct: 89  LRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL--------------------------- 121

Query: 240 GPNFESNNSNMKLTINNYNMAHEKLSYAFSV 270
               +S+  + K+T  +Y +AHE+LSYAFSV
Sbjct: 122 ----QSDEMDNKMTSCSY-VAHERLSYAFSV 147

Binds to the E-box consensus sequence 5'-CANNTG-3' as a heterodimer and inhibits transcriptional activation by MYOD1, MYOG, MEF2A and MEF2C. Also represses expression of proinflammatory cytokines such as TNFA and IL1B. Involved in postnatal glycogen storage and energy metabolism (By similarity). Inhibits the premature or ectopic differentiation of preosteoblast cells during osteogenesis, possibly by changing the internal signal transduction response of osteoblasts to external growth factors.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
242016093	432	twist, putative [Pediculus humanus corpo	0.440	0.275	0.563	2e-28
380017209	368	PREDICTED: protein twist-like [Apis flor	0.507	0.372	0.470	6e-28
58585216	366	twist [Apis mellifera] gi|55468961|emb|C	0.533	0.393	0.506	2e-27
240848611	254	twist-like [Acyrthosiphon pisum] gi|2397	0.518	0.551	0.503	2e-27
383851189	364	PREDICTED: uncharacterized protein LOC10	0.537	0.398	0.493	2e-27
18031986	171	twist protein, partial [Patella vulgata]	0.374	0.590	0.521	3e-27
157787201	204	twist [Strongylocentrotus purpuratus] gi	0.359	0.475	0.546	2e-26
340729643	329	PREDICTED: hypothetical protein LOC10065	0.507	0.416	0.476	3e-26
443733815	200	hypothetical protein CAPTEDRAFT_154829 [	0.477	0.645	0.493	3e-26
145199459	243	twist2 [Capitella teleta]	0.477	0.530	0.493	4e-26

>gi|242016093|ref|XP_002428670.1| twist, putative [Pediculus humanus corporis] gi|212513341|gb|EEB15932.1| twist, putative [Pediculus humanus corporis]

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 97/142 (68%), Gaps = 23/142 (16%)

Query: 133 SSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKL 192
           SS K ++G  K RRK PQ+Y EL +QR++ANVRERQRTQSLNEAFTSLRK+IP LPSDKL
Sbjct: 293 SSRKINNG--KPRRKVPQSYEELQNQRVMANVRERQRTQSLNEAFTSLRKIIPTLPSDKL 350

Query: 193 SKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKL 252
           SKIQTLKLASRYI FL ++L+      GN            +G+S G  +   NN + K+
Sbjct: 351 SKIQTLKLASRYIDFLYQVLNY-----GN------------SGVSEGEDSSNENNYSSKV 393

Query: 253 TINNYN----MAHEKLSYAFSV 270
             NN      +AHE+LSYAFSV
Sbjct: 394 GNNNLGGCSYVAHERLSYAFSV 415

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017209|ref|XP_003692552.1| PREDICTED: protein twist-like [Apis florea]

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 104/170 (61%), Gaps = 33/170 (19%)

Query: 115 YMDEGDIMNNKRRKRSIS------SSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQ 168
           Y+ EG     KR+++S +      + S +SS   K+RRK   T+ E+ +QR++ANVRERQ
Sbjct: 207 YVLEGSRNGGKRKRKSSTIENESETESNASSTKTKVRRKSGATFEEIQNQRVMANVRERQ 266

Query: 169 RTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILH-------GSED-GDG 220
           RTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL ++LH       G++D G+ 
Sbjct: 267 RTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQVLHCNMENTEGADDTGER 326

Query: 221 NNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAFSV 270
           N    V   RE+ +                     +Y MAHEKLSYAFSV
Sbjct: 327 NPRSAVLAAREITSSSC------------------SY-MAHEKLSYAFSV 357

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58585216|ref|NP_001011637.1| twist [Apis mellifera] gi|55468961|emb|CAH60991.1| twist protein [Apis mellifera]

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/162 (50%), Positives = 103/162 (63%), Gaps = 18/162 (11%)

Query: 115 YMDEGDIMNNKRRKRSIS------SSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQ 168
           Y+ EG   N KR+++S +      + S +SS   K+RRK   T+ E+ +QR++ANVRERQ
Sbjct: 206 YVLEGP-RNGKRKRKSSTIENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQ 264

Query: 169 RTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQ 228
           RTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL ++LH     +  NTE  D 
Sbjct: 265 RTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQVLH----CNMENTEGADD 320

Query: 229 DRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAFSV 270
             E  N  S      E  +S+         MAHEKLSYAFSV
Sbjct: 321 ASER-NPRSAVLAAREITSSSCSY------MAHEKLSYAFSV 355

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848611|ref|NP_001155424.1| twist-like [Acyrthosiphon pisum] gi|239792187|dbj|BAH72463.1| ACYPI001448 [Acyrthosiphon pisum]

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 96/153 (62%), Gaps = 13/153 (8%)

Query: 118 EGDIMNNKRRKRSISSSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAF 177
           E D +  K+ K+  SS SK     +K RR+ PQT  E+ SQR++ANVRERQRTQSLNEAF
Sbjct: 102 EHDTVEPKKGKKR-SSRSKEIQTPLKSRRRSPQTPEEMQSQRVMANVRERQRTQSLNEAF 160

Query: 178 TSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGIS 237
            SLRK+IP LPSDKLSKIQTLKLA+RYI FL ++LH +   +       D D +  + I 
Sbjct: 161 ASLRKIIPTLPSDKLSKIQTLKLATRYIDFLYQVLHKANTDEVPMVGHTDSDSQ--HSIE 218

Query: 238 PGGPNFESNNSNMKLTINNYNMAHEKLSYAFSV 270
            G             T +   +AHE+LSYAFSV
Sbjct: 219 QGSSG----------TGSCTYVAHEQLSYAFSV 241

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851189|ref|XP_003701121.1| PREDICTED: uncharacterized protein LOC100879627 [Megachile rotundata]

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 103/162 (63%), Gaps = 17/162 (10%)

Query: 115 YMDEGDIMNNKRRKRSIS------SSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQ 168
           Y  EG     KR++++ S      + S +SS   K+RRK   T+ E+ +QR++ANVRERQ
Sbjct: 203 YAVEGSRNGGKRKRKTSSIENESETDSNASSTKSKVRRKSGATFEEIQNQRVMANVRERQ 262

Query: 169 RTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQ 228
           RTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL ++LH + +    NT+  D 
Sbjct: 263 RTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQVLHCNME----NTDSTDD 318

Query: 229 DRELFNGISPGGPNFESNNSNMKLTINNYNMAHEKLSYAFSV 270
           + E  N  S      E  +S+         MAHEKLSYAFSV
Sbjct: 319 NGER-NSRSAVLAAREITSSSCSY------MAHEKLSYAFSV 353

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18031986|gb|AAL15167.1| twist protein, partial [Patella vulgata]

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/138 (52%), Positives = 86/138 (62%), Gaps = 37/138 (26%)

Query: 139 SGDM------KIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKL 192
           SGDM      K+RRK PQTY ++ +QR++ANVRERQRT+SLN+AF  LRK+IP LPSDKL
Sbjct: 59  SGDMGCQSLKKMRRKQPQTYEDIQTQRVMANVRERQRTESLNDAFAQLRKIIPTLPSDKL 118

Query: 193 SKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKL 252
           SKIQTLKLASRYI FL ++L  SED D           ++ N  S               
Sbjct: 119 SKIQTLKLASRYIDFLYQVLR-SEDADS----------KMVNSCS--------------- 152

Query: 253 TINNYNMAHEKLSYAFSV 270
                 MAHE+LSYAFSV
Sbjct: 153 -----YMAHERLSYAFSV 165

Source: Patella vulgata

Species: Patella vulgata

Genus: Patella

Family: Patellidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|157787201|ref|NP_001099179.1| twist [Strongylocentrotus purpuratus] gi|156630574|tpg|DAA06084.1| TPA_inf: Twist [Strongylocentrotus purpuratus]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 85/128 (66%), Gaps = 31/128 (24%)

Query: 143 KIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLAS 202
           KIRRK PQ++ EL +QR+LANVRERQRTQSLN+AFT+LRK+IP LPSDKLSKIQTLKLAS
Sbjct: 95  KIRRKGPQSFDELQNQRVLANVRERQRTQSLNDAFTNLRKIIPTLPSDKLSKIQTLKLAS 154

Query: 203 RYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINNYNMAHE 262
           RYI FL ++L   E           +D+++      G  N+               MAHE
Sbjct: 155 RYIDFLFQVLKSDE-----------EDQKMV-----GSCNY---------------MAHE 183

Query: 263 KLSYAFSV 270
           +LSYAFSV
Sbjct: 184 RLSYAFSV 191

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|340729643|ref|XP_003403107.1| PREDICTED: hypothetical protein LOC100651863 [Bombus terrestris]

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 100/172 (58%), Gaps = 35/172 (20%)

Query: 105 KTEKPEEENYYMDEGDIMNNKRRKRSISSSSKSSSGDMKIRRKYPQTYGELHSQRILANV 164
           + ++PE++NY            RKR   +S  S++    IRRK   T  E+H QR++ANV
Sbjct: 176 RCKQPEKKNY-----------GRKRKSCNSENSAATTKSIRRK-SGTSEEIHIQRVMANV 223

Query: 165 RERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTE 224
           RERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL ++LH        NTE
Sbjct: 224 RERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQVLHC-------NTE 276

Query: 225 IVDQDRELFNGISPGGPNFESNNSNMKLTINNYN------MAHEKLSYAFSV 270
             D   +       GG   E N  +  L            MAHEKLSYAFSV
Sbjct: 277 NTDNSED-------GG---ERNPRSAVLAAREITSSSCSYMAHEKLSYAFSV 318

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443733815|gb|ELU18035.1| hypothetical protein CAPTEDRAFT_154829 [Capitella teleta]

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 94/150 (62%), Gaps = 21/150 (14%)

Query: 123 NNKRRKRSISSSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRK 182
           + K RKR+  S+S +++   + R    Q++ EL  QR++ANVRERQRTQSLNEAFT LRK
Sbjct: 55  DRKSRKRTKRSASDANAKRTR-RADDAQSFEELQHQRVMANVRERQRTQSLNEAFTHLRK 113

Query: 183 LIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPGGPN 242
           +IP LPSDKLSKIQTLKLA+RYI FL ++L  S+D  G                 PG   
Sbjct: 114 IIPTLPSDKLSKIQTLKLATRYIDFLYQVLR-SDDAGG-----------------PGDLG 155

Query: 243 FESNNSNMKLTI--NNYNMAHEKLSYAFSV 270
           F     + KL +  +   +AHEKLSYAFSV
Sbjct: 156 FVPTTPSCKLPVVPSCSYVAHEKLSYAFSV 185

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|145199459|gb|ABP35759.1| twist2 [Capitella teleta]

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 94/150 (62%), Gaps = 21/150 (14%)

Query: 123 NNKRRKRSISSSSKSSSGDMKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRK 182
           + K RKR+  S+S +++   + R    Q++ EL  QR++ANVRERQRTQSLNEAFT LRK
Sbjct: 98  DRKSRKRTKRSASDANAKRTR-RADDAQSFEELQHQRVMANVRERQRTQSLNEAFTHLRK 156

Query: 183 LIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVDQDRELFNGISPGGPN 242
           +IP LPSDKLSKIQTLKLA+RYI FL ++L  S+D  G                 PG   
Sbjct: 157 IIPTLPSDKLSKIQTLKLATRYIDFLYQVLR-SDDAGG-----------------PGDLG 198

Query: 243 FESNNSNMKLTI--NNYNMAHEKLSYAFSV 270
           F     + KL +  +   +AHEKLSYAFSV
Sbjct: 199 FVPTTPSCKLPVVPSCSYVAHEKLSYAFSV 228

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
UNIPROTKB|G3N341	201	TWIST1 "Uncharacterized protei	0.251	0.338	0.735	1.6e-29
UNIPROTKB|Q15672	202	TWIST1 "Twist-related protein	0.251	0.336	0.735	1.6e-29
MGI|MGI:98872	206	Twist1 "twist basic helix-loop	0.251	0.330	0.735	1.6e-29
UNIPROTKB|Q9EPJ1	203	Twist1 "Twist homolog 1 (Droso	0.251	0.334	0.735	1.6e-29
UNIPROTKB|P13903	166	twist1 "Twist-related protein"	0.251	0.409	0.779	1.6e-28
ZFIN|ZDB-GENE-050417-357	169	twist1b "twist1b" [Danio rerio	0.251	0.402	0.735	1.7e-27
UNIPROTKB|A7Z095	161	TWIST3 "Twist3" [Gallus gallus	0.266	0.447	0.666	2.2e-27
UNIPROTKB|H7BY00	135	TWIST1 "Twist-related protein	0.251	0.503	0.735	9.4e-27
UNIPROTKB|O96642	196	TWIST "Twist-related protein"	0.255	0.352	0.714	8.2e-26
ZFIN|ZDB-GENE-000210-7	199	twist3 "twist3" [Danio rerio (	0.248	0.336	0.701	1e-25

UNIPROTKB|G3N341 TWIST1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 257 (95.5 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
 Identities = 50/68 (73%), Positives = 59/68 (86%)

Query:   149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
             PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct:    99 PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 158

Query:   209 CEILHGSE 216
              ++L   E
Sbjct:   159 YQVLQSDE 166

GO:2000802 "positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation" evidence=IEA

GO:2000793 "cell proliferation involved in heart valve development" evidence=IEA

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

GO:2000778 "positive regulation of interleukin-6 secretion" evidence=IEA

GO:2000773 "negative regulation of cellular senescence" evidence=IEA

GO:2000679 "positive regulation of transcription regulatory region DNA binding" evidence=IEA

GO:2000276 "negative regulation of oxidative phosphorylation uncoupler activity" evidence=IEA

GO:2000147 "positive regulation of cell motility" evidence=IEA

GO:0071639 "positive regulation of monocyte chemotactic protein-1 production" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=IEA

GO:0070888 "E-box binding" evidence=IEA

GO:0061029 "eyelid development in camera-type eye" evidence=IEA

GO:0060900 "embryonic camera-type eye formation" evidence=IEA

GO:0060363 "cranial suture morphogenesis" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0048642 "negative regulation of skeletal muscle tissue development" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043425 "bHLH transcription factor binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0035359 "negative regulation of peroxisome proliferator activated receptor signaling pathway" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0035115 "embryonic forelimb morphogenesis" evidence=IEA

GO:0035067 "negative regulation of histone acetylation" evidence=IEA

GO:0033128 "negative regulation of histone phosphorylation" evidence=IEA

GO:0032760 "positive regulation of tumor necrosis factor production" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=IEA

GO:0030500 "regulation of bone mineralization" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003253 "cardiac neural crest cell migration involved in outflow tract morphogenesis" evidence=IEA

GO:0003203 "endocardial cushion morphogenesis" evidence=IEA

GO:0003183 "mitral valve morphogenesis" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q15672 TWIST1 "Twist-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 257 (95.5 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
 Identities = 50/68 (73%), Positives = 59/68 (86%)

Query:   149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
             PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct:   100 PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 159

Query:   209 CEILHGSE 216
              ++L   E
Sbjct:   160 YQVLQSDE 167

GO:0007517 "muscle organ development" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003183 "mitral valve morphogenesis" evidence=IEA

GO:0003203 "endocardial cushion morphogenesis" evidence=IEA

GO:0003253 "cardiac neural crest cell migration involved in outflow tract morphogenesis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0035067 "negative regulation of histone acetylation" evidence=IEA

GO:0035115 "embryonic forelimb morphogenesis" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0035359 "negative regulation of peroxisome proliferator activated receptor signaling pathway" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048642 "negative regulation of skeletal muscle tissue development" evidence=IEA

GO:2000276 "negative regulation of oxidative phosphorylation uncoupler activity" evidence=IEA

GO:2000802 "positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IMP

GO:0043425 "bHLH transcription factor binding" evidence=IPI

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA;IMP

GO:2000679 "positive regulation of transcription regulatory region DNA binding" evidence=IMP

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IMP

GO:0061029 "eyelid development in camera-type eye" evidence=IMP

GO:0060900 "embryonic camera-type eye formation" evidence=IMP

GO:2000147 "positive regulation of cell motility" evidence=IMP;NAS

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

GO:0070888 "E-box binding" evidence=IDA

GO:0030500 "regulation of bone mineralization" evidence=IMP

GO:0003180 "aortic valve morphogenesis" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IMP

GO:0033128 "negative regulation of histone phosphorylation" evidence=IMP

GO:0045766 "positive regulation of angiogenesis" evidence=NAS

GO:0071456 "cellular response to hypoxia" evidence=IMP

GO:0010718 "positive regulation of epithelial to mesenchymal transition" evidence=IMP

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=IMP

GO:0032760 "positive regulation of tumor necrosis factor production" evidence=IMP

GO:0071639 "positive regulation of monocyte chemotactic protein-1 production" evidence=IMP

GO:0060363 "cranial suture morphogenesis" evidence=TAS

GO:0042733 "embryonic digit morphogenesis" evidence=TAS

GO:0001503 "ossification" evidence=TAS

GO:0042473 "outer ear morphogenesis" evidence=TAS

GO:2000773 "negative regulation of cellular senescence" evidence=IMP

GO:2000780 "negative regulation of double-strand break repair" evidence=IMP

GO:2000793 "cell proliferation involved in heart valve development" evidence=IMP

GO:2000778 "positive regulation of interleukin-6 secretion" evidence=IMP

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA

MGI|MGI:98872 Twist1 "twist basic helix-loop-helix transcription factor 1" [Mus musculus (taxid:10090)]

 Score = 257 (95.5 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
 Identities = 50/68 (73%), Positives = 59/68 (86%)

Query:   149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
             PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct:   104 PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 163

Query:   209 CEILHGSE 216
              ++L   E
Sbjct:   164 YQVLQSDE 171

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISO

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=TAS

GO:0001503 "ossification" evidence=IMP

GO:0001649 "osteoblast differentiation" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0001843 "neural tube closure" evidence=IMP

GO:0003180 "aortic valve morphogenesis" evidence=ISO;IMP

GO:0003183 "mitral valve morphogenesis" evidence=IMP

GO:0003203 "endocardial cushion morphogenesis" evidence=IMP

GO:0003253 "cardiac neural crest cell migration involved in outflow tract morphogenesis" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006915 "apoptotic process" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO;IPI

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0010718 "positive regulation of epithelial to mesenchymal transition" evidence=ISO;IMP

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030154 "cell differentiation" evidence=IMP

GO:0030326 "embryonic limb morphogenesis" evidence=IMP

GO:0030500 "regulation of bone mineralization" evidence=ISO

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=ISO

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IGI

GO:0032760 "positive regulation of tumor necrosis factor production" evidence=ISO

GO:0033128 "negative regulation of histone phosphorylation" evidence=ISO

GO:0035067 "negative regulation of histone acetylation" evidence=IDA

GO:0035115 "embryonic forelimb morphogenesis" evidence=IMP

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IMP

GO:0035137 "hindlimb morphogenesis" evidence=IMP

GO:0035359 "negative regulation of peroxisome proliferator activated receptor signaling pathway" evidence=IDA

GO:0042733 "embryonic digit morphogenesis" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043425 "bHLH transcription factor binding" evidence=ISO

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0044092 "negative regulation of molecular function" evidence=IDA

GO:0045596 "negative regulation of cell differentiation" evidence=IDA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=ISO;IDA

GO:0045843 "negative regulation of striated muscle tissue development" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA;TAS

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048642 "negative regulation of skeletal muscle tissue development" evidence=IDA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=ISO;IGI;IMP

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IMP

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISO

GO:0060363 "cranial suture morphogenesis" evidence=IMP

GO:0060900 "embryonic camera-type eye formation" evidence=ISO

GO:0061029 "eyelid development in camera-type eye" evidence=ISO

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=IMP

GO:0070888 "E-box binding" evidence=ISO;IDA;TAS

GO:0071456 "cellular response to hypoxia" evidence=ISO;IMP

GO:0071639 "positive regulation of monocyte chemotactic protein-1 production" evidence=ISO

GO:2000147 "positive regulation of cell motility" evidence=ISO;IMP

GO:2000276 "negative regulation of oxidative phosphorylation uncoupler activity" evidence=IDA

GO:2000679 "positive regulation of transcription regulatory region DNA binding" evidence=ISO

GO:2000773 "negative regulation of cellular senescence" evidence=ISO

GO:2000778 "positive regulation of interleukin-6 secretion" evidence=ISO

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO

GO:2000793 "cell proliferation involved in heart valve development" evidence=ISO;IMP

GO:2000802 "positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation" evidence=IDA

UNIPROTKB|Q9EPJ1 Twist1 "Twist homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
 Identities = 50/68 (73%), Positives = 59/68 (86%)

Query:   149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
             PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct:   101 PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 160

Query:   209 CEILHGSE 216
              ++L   E
Sbjct:   161 YQVLQSDE 168

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003183 "mitral valve morphogenesis" evidence=IEA

GO:0003203 "endocardial cushion morphogenesis" evidence=IEA

GO:0003253 "cardiac neural crest cell migration involved in outflow tract morphogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030500 "regulation of bone mineralization" evidence=IEA

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0032760 "positive regulation of tumor necrosis factor production" evidence=IEA

GO:0033128 "negative regulation of histone phosphorylation" evidence=IEA

GO:0035067 "negative regulation of histone acetylation" evidence=IEA

GO:0035115 "embryonic forelimb morphogenesis" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0035359 "negative regulation of peroxisome proliferator activated receptor signaling pathway" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043425 "bHLH transcription factor binding" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048642 "negative regulation of skeletal muscle tissue development" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0060363 "cranial suture morphogenesis" evidence=IEA

GO:0060900 "embryonic camera-type eye formation" evidence=IEA

GO:0061029 "eyelid development in camera-type eye" evidence=IEA

GO:0070888 "E-box binding" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=IEA

GO:0071639 "positive regulation of monocyte chemotactic protein-1 production" evidence=IEA

GO:2000147 "positive regulation of cell motility" evidence=IEA

GO:2000276 "negative regulation of oxidative phosphorylation uncoupler activity" evidence=IEA

GO:2000679 "positive regulation of transcription regulatory region DNA binding" evidence=IEA

GO:2000773 "negative regulation of cellular senescence" evidence=IEA

GO:2000778 "positive regulation of interleukin-6 secretion" evidence=IEA

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

GO:2000793 "cell proliferation involved in heart valve development" evidence=IEA

GO:2000802 "positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation" evidence=IEA

UNIPROTKB|P13903 twist1 "Twist-related protein" [Xenopus laevis (taxid:8355)]

 Score = 274 (101.5 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 53/68 (77%), Positives = 61/68 (89%)

Query:   149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
             PQ++ EL SQR++ANVRERQRTQSLNEAF+SLRK+IP LPSDKLSKIQTLKLASRYI FL
Sbjct:    64 PQSFEELQSQRVMANVRERQRTQSLNEAFSSLRKIIPTLPSDKLSKIQTLKLASRYIDFL 123

Query:   209 CEILHGSE 216
             C++L   E
Sbjct:   124 CQVLQSDE 131

GO:0014029 "neural crest formation" evidence=TAS

ZFIN|ZDB-GENE-050417-357 twist1b "twist1b" [Danio rerio (taxid:7955)]

 Score = 264 (98.0 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
 Identities = 50/68 (73%), Positives = 60/68 (88%)

Query:   149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
             PQ++ EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct:    67 PQSFEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 126

Query:   209 CEILHGSE 216
             C++L   E
Sbjct:   127 CQVLQSDE 134

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IGI

GO:0030500 "regulation of bone mineralization" evidence=IMP

UNIPROTKB|A7Z095 TWIST3 "Twist3" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
 Identities = 48/72 (66%), Positives = 60/72 (83%)

Query:   145 RRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRY 204
             R   PQ++ ++H+QR++ANVRERQRTQSLN+AF  LRK+IP LPSDKLSKIQTLKLA+RY
Sbjct:    55 RSPVPQSFEDVHTQRVIANVRERQRTQSLNDAFAELRKIIPTLPSDKLSKIQTLKLAARY 114

Query:   205 IHFLCEILHGSE 216
             I FL ++L   E
Sbjct:   115 IDFLYQVLQSDE 126

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|H7BY00 TWIST1 "Twist-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 257 (95.5 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
 Identities = 50/68 (73%), Positives = 59/68 (86%)

Query:   149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
             PQ+Y EL +QR++ANVRERQRTQSLNEAF +LRK+IP LPSDKLSKIQTLKLA+RYI FL
Sbjct:    33 PQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 92

Query:   209 CEILHGSE 216
              ++L   E
Sbjct:    93 YQVLQSDE 100

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|O96642 TWIST "Twist-related protein" [Branchiostoma belcheri (taxid:7741)]

 Score = 248 (92.4 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 50/70 (71%), Positives = 62/70 (88%)

Query:   150 QTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLC 209
             +++ +L +QR+LANVRERQRTQSLNEAF+SLRK+IP LPSDKLSKIQTLKLA+RYI FL 
Sbjct:    88 ESFEDLQNQRVLANVRERQRTQSLNEAFSSLRKIIPTLPSDKLSKIQTLKLAARYIDFLY 147

Query:   210 EILHGSEDGD 219
             ++L  S+D D
Sbjct:   148 QVLR-SDDTD 156

GO:0007498 "mesoderm development" evidence=NAS

GO:0045596 "negative regulation of cell differentiation" evidence=NAS

ZFIN|ZDB-GENE-000210-7 twist3 "twist3" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 47/67 (70%), Positives = 56/67 (83%)

Query:   150 QTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLC 209
             Q + +LH+QR++ANVRERQRTQSLN+AF SLRK+IP L SDKLSKIQ LKLASRYI FL 
Sbjct:    98 QPFEDLHTQRVIANVRERQRTQSLNDAFASLRKIIPTLSSDKLSKIQILKLASRYIDFLY 157

Query:   210 EILHGSE 216
             ++L   E
Sbjct:   158 QVLQSDE 164

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15672	TWST1_HUMAN	No assigned EC number	0.5081	0.3333	0.4455	yes	N/A
P26687	TWST1_MOUSE	No assigned EC number	0.5081	0.3333	0.4368	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	270
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	2e-16
smart00353	53	smart00353, HLH, helix loop helix domain	1e-12
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	8e-12

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 71.0 bits (175), Expect = 2e-16
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query: 158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           +R   N RER+R   +N+AF  LR+L+P  P+ KLSK + L+LA  YI  L
Sbjct: 1   RRKAHNERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHL 51

Length = 52

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 163 NVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILH 213
           N RER+R + +NEAF  LR L+P LP + KLSK + L+LA  YI  L E L 
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 58.8 bits (143), Expect = 8e-12
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 157 SQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFL 208
           S+R   N+RER+R + +N+AF  LR L+P LP   KLSK + L+ A  YI  L
Sbjct: 3   SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSL 55

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
KOG4447|consensus	173		99.86
KOG3960|consensus	284		99.67
KOG4029|consensus	228		99.66
KOG3910|consensus	632		99.62
KOG3898|consensus	254		99.61
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.43
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.33
smart00353	53	HLH helix loop helix domain.	99.23
KOG4395|consensus	285		99.19
KOG0561|consensus	373		98.9
KOG1318|consensus	411		98.23
KOG1319|consensus	229		98.01
KOG2483|consensus	232		97.82
KOG4447|consensus	173		97.05
KOG4304|consensus	250		96.27
KOG3561|consensus	803		95.54
KOG2588|consensus	953		95.06
PLN03217	93	transcription factor ATBS1; Provisional	88.94

>KOG4447|consensus

Probab=99.86  E-value=3.4e-22  Score=172.16  Aligned_cols=93  Identities=65%  Similarity=0.921  Sum_probs=83.2

Q ss_pred             CCCCchhhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccc
Q psy4627         148 YPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVD  227 (270)
Q Consensus       148 ~~~s~~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~~~~~d~~~~~~~~  227 (270)
                      ..+..++.+.+|.-||+|||+|.++||+||..||+.||++|.+|||||+||++|..||.+|.+||..+...+        
T Consensus        68 ~~~~~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~s~l~~~--------  139 (173)
T KOG4447|consen   68 SIQSLDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDLELD--------  139 (173)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccccccccc--------
Confidence            346788889999999999999999999999999999999999999999999999999999999998764322        


Q ss_pred             hhhhhccCCCCCCCCCCCCCCCCCcccCcc-cccccccccccCC
Q psy4627         228 QDRELFNGISPGGPNFESNNSNMKLTINNY-NMAHEKLSYAFSV  270 (270)
Q Consensus       228 ~~~~l~~g~Ss~sp~~sss~S~~~~s~C~y-~la~e~LSyafsv  270 (270)
                                            .|+++|.| -++||+|||+|+|
T Consensus       140 ----------------------~~~~sc~yPk~~~e~Lsy~fsv  161 (173)
T KOG4447|consen  140 ----------------------PKMQSCSYPKVAHERLSYAFSV  161 (173)
T ss_pred             ----------------------cccCCCCCCccchhhhcccccc
Confidence                                  26777887 5889999999997

>KOG3960|consensus

Probab=99.67  E-value=2.1e-16  Score=145.28  Aligned_cols=63  Identities=33%  Similarity=0.564  Sum_probs=59.6

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCC
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDG  218 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~~~~~  218 (270)
                      .+||++|.+|||+|+++||+||+.|+++.-..|+++|.||||||.||+||..||.||++....
T Consensus       116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~  178 (284)
T KOG3960|consen  116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA  178 (284)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            589999999999999999999999999999999999999999999999999999999976643

>KOG4029|consensus

Probab=99.66  E-value=1.9e-16  Score=141.24  Aligned_cols=64  Identities=48%  Similarity=0.733  Sum_probs=59.9

Q ss_pred             hHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCC-C-CCCHHHHHHHHHHHHHHHHHHhccCCCC
Q psy4627         155 LHSQRILANVRERQRTQSLNEAFTSLRKLIPALPS-D-KLSKIQTLKLASRYIHFLCEILHGSEDG  218 (270)
Q Consensus       155 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~-~-KLSKIetLr~Ai~YI~~L~~lL~~~~~~  218 (270)
                      ...+|.++|+|||+|++.||.||..||.+||+.+. + |||||+|||+||.||.+|++||+.+..+
T Consensus       106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~  171 (228)
T KOG4029|consen  106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP  171 (228)
T ss_pred             hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence            36789999999999999999999999999999997 6 8999999999999999999999988754

>KOG3910|consensus

Probab=99.62  E-value=7.1e-16  Score=152.14  Aligned_cols=131  Identities=25%  Similarity=0.195  Sum_probs=97.8

Q ss_pred             ccccccCCCCCccccccCCcccccccccCCCC----CcCCCCCcccc-------ccccccccCCCCCCCCCCCcccccCC
Q psy4627          79 FYTEVDQNKSENIYRSENLDMYGTLVKTEKPE----EENYYMDEGDI-------MNNKRRKRSISSSSKSSSGDMKIRRK  147 (270)
Q Consensus        79 ~y~~~~~~~~~~~~~~~~~d~s~t~v~te~~~----~~~~~~d~~~~-------~~~Krrkr~~sss~~s~~~~~~~r~~  147 (270)
                      .=+.|+++++|+.|+++...++++++.++++.    .+++.+.....       +..|+-++       ......+....
T Consensus       443 s~t~Pdl~k~~e~y~g~l~g~s~tssassik~ddke~~es~~~~~ss~~~k~qg~~~k~irt-------~sS~dedddl~  515 (632)
T KOG3910|consen  443 SGTSPDLNKPPEGYRGGLQGQSPTSSASSIKNDDKEPDESLSRSNSSEDRKSQGKPSKRIRT-------RSSSDEDDDLN  515 (632)
T ss_pred             CCCCcccCCCCCCCcccccCCCCccccceeeccccCcccccccCcchhhhhhcCCCCCCCCc-------cCCcccccccC
Confidence            44678999999999998777777666655555    44555442111       11222222       12234555666


Q ss_pred             CCCCchhhHHHHhHhhHHHHHHHHHHHHHHHHH-HhhCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhccCC
Q psy4627         148 YPQTYGELHSQRILANVRERQRTQSLNEAFTSL-RKLIPALPSDK-LSKIQTLKLASRYIHFLCEILHGSE  216 (270)
Q Consensus       148 ~~~s~~~~~~rR~~aN~RER~R~~~lN~AF~~L-R~~lP~~p~~K-LSKIetLr~Ai~YI~~L~~lL~~~~  216 (270)
                      +.++++.+++||++.|+|||.|+++||+||.+| |.|.-++.++| .+|+-||..|+..|..|++.+++..
T Consensus       516 peqkaeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  516 PEQKAEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             hhhhhhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            778999999999999999999999999999999 55556777787 9999999999999999999998653

>KOG3898|consensus

Probab=99.61  E-value=9.7e-16  Score=140.22  Aligned_cols=66  Identities=44%  Similarity=0.574  Sum_probs=60.2

Q ss_pred             hhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy4627         154 ELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILHGSEDGD  219 (270)
Q Consensus       154 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~~~~~~d  219 (270)
                      ....||..+|+|||+||++||+||+.||.+||..+.. ||+||+||++|.+||..|+.++......+
T Consensus        68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~~~  134 (254)
T KOG3898|consen   68 ALTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIAPL  134 (254)
T ss_pred             hhhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCCcc
Confidence            5578999999999999999999999999999987766 99999999999999999999998776544

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.43  E-value=4.1e-13  Score=95.18  Aligned_cols=52  Identities=42%  Similarity=0.595  Sum_probs=48.4

Q ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHhhCCCC---CCCCCCHHHHHHHHHHHHHHHH
Q psy4627         158 QRILANVRERQRTQSLNEAFTSLRKLIPAL---PSDKLSKIQTLKLASRYIHFLC  209 (270)
Q Consensus       158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~---p~~KLSKIetLr~Ai~YI~~L~  209 (270)
                      ||..+|.+||.|+..||.+|+.|+..||..   ...|++|+.||..|++||..||
T Consensus         1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            688999999999999999999999999996   3349999999999999999996

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.33  E-value=6.5e-12  Score=88.88  Aligned_cols=56  Identities=48%  Similarity=0.745  Sum_probs=52.3

Q ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHh
Q psy4627         157 SQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEIL  212 (270)
Q Consensus       157 ~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL  212 (270)
                      .+|..+|.+||.|+..||.+|+.|+..||..... |++|+.||..|++||..|+..+
T Consensus         3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999999998844 9999999999999999999865

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.23  E-value=3.7e-11  Score=83.76  Aligned_cols=51  Identities=53%  Similarity=0.804  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         163 NVRERQRTQSLNEAFTSLRKLIPALP-SDKLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       163 N~RER~R~~~lN~AF~~LR~~lP~~p-~~KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      |.+||+|+..||.+|+.|+..||... ..|++|+.||..|++||..|+..++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            67899999999999999999999986 5599999999999999999998764

>KOG4395|consensus

Probab=99.19  E-value=2.5e-11  Score=112.13  Aligned_cols=63  Identities=43%  Similarity=0.530  Sum_probs=57.9

Q ss_pred             hhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhccCC
Q psy4627         154 ELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILHGSE  216 (270)
Q Consensus       154 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~~~~  216 (270)
                      ....||.++|+|||+||+.||.||+.||..||..-++ ||||-+||++|..||..|..+|....
T Consensus       170 v~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~  233 (285)
T KOG4395|consen  170 VNSHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPM  233 (285)
T ss_pred             HHHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCcc
Confidence            3457888999999999999999999999999999888 89999999999999999999997554

>KOG0561|consensus

Probab=98.90  E-value=2.1e-09  Score=101.78  Aligned_cols=62  Identities=40%  Similarity=0.519  Sum_probs=56.6

Q ss_pred             CCCchhhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy4627         149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCE  210 (270)
Q Consensus       149 ~~s~~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~  210 (270)
                      .+.+.+.+-||.-||--||+||+.||.+|..||..||..-++||||..||+...+||..|..
T Consensus        51 t~~D~erRmRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~  112 (373)
T KOG0561|consen   51 TSLDPERRMRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEG  112 (373)
T ss_pred             cccCHHHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            34556667888899999999999999999999999999999999999999999999999975

>KOG1318|consensus

Probab=98.23  E-value=9.9e-06  Score=79.57  Aligned_cols=64  Identities=30%  Similarity=0.353  Sum_probs=56.7

Q ss_pred             CCchhhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         150 QTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD--KLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       150 ~s~~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~--KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      ...+...+||..||+=||+|+-.||....+|..+||..-..  |+.|--||+.+++||+.|++.++
T Consensus       225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            44555667788899999999999999999999999997543  99999999999999999999887

>KOG1319|consensus

Probab=98.01  E-value=1.4e-05  Score=72.11  Aligned_cols=57  Identities=28%  Similarity=0.458  Sum_probs=50.0

Q ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCC-CC----CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         157 SQRILANVRERQRTQSLNEAFTSLRKLIPALP-SD----KLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       157 ~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p-~~----KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      .||.+|..-||+|+..||.+|+.|+..||... ++    ||||.-||..||+||.+|..-..
T Consensus        61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~  122 (229)
T KOG1319|consen   61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKK  122 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999964 22    99999999999999999976544

>KOG2483|consensus

Probab=97.82  E-value=4.5e-05  Score=70.08  Aligned_cols=60  Identities=27%  Similarity=0.311  Sum_probs=54.0

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC-HHHHHHHHHHHHHHHHHHhccC
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLS-KIQTLKLASRYIHFLCEILHGS  215 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLS-KIetLr~Ai~YI~~L~~lL~~~  215 (270)
                      ...|..+|+.||+|+..|.++|+.||..||.++..|.+ -+.||+.|..||..|+......
T Consensus        57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~  117 (232)
T KOG2483|consen   57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ  117 (232)
T ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence            46899999999999999999999999999999988766 8999999999999998766543

>KOG4447|consensus

Probab=97.05  E-value=0.00035  Score=61.32  Aligned_cols=56  Identities=34%  Similarity=0.393  Sum_probs=49.9

Q ss_pred             HHHhHhhHH-HHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy4627         157 SQRILANVR-ERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEIL  212 (270)
Q Consensus       157 ~rR~~aN~R-ER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL  212 (270)
                      ..|.-+|.| ||.|.+.+|+||.-|+..+|-.|.++.+|+.+|+.|..||.+|.++-
T Consensus        20 ~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q   76 (173)
T KOG4447|consen   20 SEEECDRQRKERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQ   76 (173)
T ss_pred             hhhhhhhhHHHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHH
Confidence            445555556 99999999999999999999999999999999999999999998853

>KOG4304|consensus

Probab=96.27  E-value=0.0051  Score=57.07  Aligned_cols=57  Identities=23%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCC------CCCCCHHHHHHHHHHHHHHHHHHh
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALP------SDKLSKIQTLKLASRYIHFLCEIL  212 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p------~~KLSKIetLr~Ai~YI~~L~~lL  212 (270)
                      ..|+..+=.-||+|+.-||.+++.||++||..-      .-||-|.+||.++++|...|+..-
T Consensus        30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~   92 (250)
T KOG4304|consen   30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ   92 (250)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            455666778999999999999999999999852      138999999999999999998843

>KOG3561|consensus

Probab=95.54  E-value=0.022  Score=60.52  Aligned_cols=56  Identities=21%  Similarity=0.350  Sum_probs=51.4

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCC--CCCCHHHHHHHHHHHHHHHHHH
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPS--DKLSKIQTLKLASRYIHFLCEI  211 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~--~KLSKIetLr~Ai~YI~~L~~l  211 (270)
                      +..|..+|.-||+|+..+|.-.++|-.+||+...  .|+=|..|||+|+..|+.+..+
T Consensus        18 r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   18 RKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            4558999999999999999999999999999863  5999999999999999999886

>KOG2588|consensus

Probab=95.06  E-value=0.018  Score=61.84  Aligned_cols=59  Identities=27%  Similarity=0.351  Sum_probs=51.9

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGS  215 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~~  215 (270)
                      ..+|.+||.=|++=+.+||+-..+||+.||..+ -|+.|-.+||.||+||..|+......
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~-aKl~kSavLr~ai~~i~dl~~~nq~l  332 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTE-AKLNKSAVLRKAIDYIEDLQGYNQKL  332 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccH-hhhhhhhhHHHHHHHHHHhhcccccc
Confidence            368999999999999999999999999999533 29999999999999999998765543

>PLN03217 transcription factor ATBS1; Provisional

Probab=88.94  E-value=0.68  Score=37.49  Aligned_cols=44  Identities=27%  Similarity=0.465  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhhCCCCCC----CCCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         170 TQSLNEAFTSLRKLIPALPS----DKLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       170 ~~~lN~AF~~LR~~lP~~p~----~KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      -.+||+-...|+..||....    .|.|--.+|+.+++||+.|..-++
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvD   66 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVD   66 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999643    378888999999999999988665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
2ql2_B	60	Crystal Structure Of The Basic-Helix-Loop-Helix Dom		1e-07

>pdb|2QL2|B Chain B, Crystal Structure Of The Basic-Helix-Loop-Helix Domains Of The Heterodimer E47NEUROD1 BOUND TO DNA Length = 60

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 157 SQRILANVRERQRTQSLNEAFTSLRKLIPALP-SDKLSKIQTLKLASRYIHFLCEIL 212
           S+R+ AN RER R   LN A  +LRK++P    + KLSKI+TL+LA  YI  L EIL
Sbjct: 1   SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	4e-25
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	2e-24
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	2e-09
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	3e-09
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	5e-08
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	8e-08
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	3e-05
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	7e-05

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60

 Score = 93.5 bits (233), Expect = 4e-25
 Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 157 SQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILH 213
           S+R+ AN RER R   LN A  +LRK++P      KLSKI+TL+LA  YI  L EIL 
Sbjct: 1   SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68

 Score = 91.7 bits (228), Expect = 2e-24
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 142 MKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLA 201
           M+++RK          +R  A +RER+R   +NEAF +L++   + P+ +L K++ L+ A
Sbjct: 1   MELKRKTTNAD-----RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNA 55

Query: 202 SRYIHFLCEILH 213
            RYI  L  +L 
Sbjct: 56  IRYIEGLQALLR 67

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 158 QRILANVRERQRTQSLNEAFTSL-RKLIPALPSD-KLSKIQTLKLASRYIHFLCEILH 213
           +R   N  ER+R + +NEAF  L R     L SD   +K+  L+ A + I  L + + 
Sbjct: 5   KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVR 62

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 153 GELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPS-DKLSKIQTLKLASRYIHFL 208
           G ++ +R   NV ERQR   L  +F +LR  IP L + +K  K+  LK A+ YI  +
Sbjct: 1   GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 159 RILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           R   N  ER+R   + ++F SLR  +P+L  +K S+ Q L  A+ YI ++
Sbjct: 13  RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYM 62

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCE 210
           +R   N  ER+R   + ++F SLR  +P+L  +K S+ Q L  A+ YI ++  
Sbjct: 2   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRR 54

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 159 RILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCE 210
           R   N  E+ R   L  +   L+ L+P  P   + + +  L  A  +I  L +
Sbjct: 2   RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLED 54

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 48/298 (16%), Positives = 84/298 (28%), Gaps = 97/298 (32%)

Query: 10  TEVDENKSETIYRSENMDMYGVKNENPEISVNV----EKDIPEDNLDHN---LNSKNLLI 62
           T+     + T    ++  M    +E   + +       +D+P + L  N   L+    +I
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS----II 333

Query: 63  LEQMKSETAHPYLTDYFYTEVDQNKSENIYRS--ENLD------MYGTLV---KTEK-PE 110
            E ++   A     D  +  V+ +K   I  S    L+      M+  L     +   P 
Sbjct: 334 AESIRDGLATW---DN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 111 E-------ENYYMDEGDIMNNKRRKRSISSSSKSS-----SGDMKIRRKYPQTYGELHSQ 158
                   +    D   ++N   +   +    K S     S  ++++ K    Y  LH  
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY-ALHRS 448

Query: 159 RI------------------------------LANVRERQRTQSLNEAFTSLR----KLI 184
            +                              L N+   +R       F   R    K+ 
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 185 PA-----LPSDKLSKIQTLKLASRYI---------------HFL--CE-ILHGSEDGD 219
                       L+ +Q LK    YI                FL   E  L  S+  D
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 41/253 (16%), Positives = 81/253 (32%), Gaps = 59/253 (23%)

Query: 44  KDIPEDNLD---HNLNSKNLLILEQMKSETAHPYLTDYFYTEVDQ-----NKSENIYRSE 95
           KDI     D    N + K+  + +  K       L+     E+D      +      R  
Sbjct: 19  KDILSVFEDAFVDNFDCKD--VQDMPK-----SILSK---EEIDHIIMSKDAVSGTLR-- 66

Query: 96  NLDMYGTLVKTEKPEEE-NYYMDEGDIMNNKRRKRSISSSSKSSSGDMKIRRKYPQTYGE 154
              ++ TL+   K EE    +++E   +N K     I +  +  S   +    Y +    
Sbjct: 67  ---LFWTLL--SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR---MYIEQRDR 118

Query: 155 LHSQ-RILA--NVRERQRTQSLNEAFTSLRKLIPALPSDKLS--------K----IQTLK 199
           L++  ++ A  NV   Q    L +A   LR      P+  +         K    +    
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCL 172

Query: 200 LASRYIHFLCEI--LH-GSEDGDGNNTEIVDQDRELFNGISPGGPNFESNNSNMKLTINN 256
                     +I  L+  + +       +++  ++L   I P   N+ S + +       
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPE---TVLEMLQKLLYQIDP---NWTSRSDHSSNIKLR 226

Query: 257 YNMAHEKLSYAFS 269
            +    +L     
Sbjct: 227 IHSIQAELRRLLK 239

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 163 NVRERQRTQSLNEAFTSLRKLIPAL----PSDKLSKIQTLKLASRYIHFL 208
           N  ER+R   +N     L K+IP           SK   L  AS YI  L
Sbjct: 10  NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 157 SQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
            +R   N  E++   S+N+    L+ L+    + KL+K   L+ A  YI FL
Sbjct: 5   EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA-KLNKSAVLRKAIDYIRFL 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.87
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.85
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	99.75
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	99.75
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.64
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.59
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.53
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.52
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.45
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.27
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.24
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.11
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.05
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.0
4ati_A	118	MITF, microphthalmia-associated transcription fact	98.99
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.38
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.03
4ath_A	83	MITF, microphthalmia-associated transcription fact	97.34
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	94.21

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.87  E-value=3.7e-22  Score=146.13  Aligned_cols=57  Identities=51%  Similarity=0.763  Sum_probs=54.6

Q ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627         158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILHG  214 (270)
Q Consensus       158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~~  214 (270)
                      ||.+||+|||+||++||.||+.||.+||..+.+ |||||+||++|++||.+|+++|++
T Consensus         2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~   59 (60)
T 2ql2_B            2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS   59 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            789999999999999999999999999999866 999999999999999999999975

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.85  E-value=1e-21  Score=147.20  Aligned_cols=59  Identities=36%  Similarity=0.563  Sum_probs=56.3

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG  214 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~  214 (270)
                      ..+|.+||+|||+||+.||+||+.||.+||..|.+|||||+||++||+||.+|+++|++
T Consensus        10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~~   68 (68)
T 1mdy_A           10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence            68999999999999999999999999999998877999999999999999999999874

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.75  E-value=2.5e-19  Score=134.81  Aligned_cols=49  Identities=27%  Similarity=0.437  Sum_probs=46.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHH
Q psy4627         162 ANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCE  210 (270)
Q Consensus       162 aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~  210 (270)
                      +|+|||+||+.||.||+.||++||..|.+ |||||+||++||+||.+||.
T Consensus        18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            58999999999999999999999999987 89999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=99.75  E-value=1.6e-18  Score=138.16  Aligned_cols=62  Identities=21%  Similarity=0.323  Sum_probs=51.8

Q ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy4627         158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILHGSEDGD  219 (270)
Q Consensus       158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~~~~~~d  219 (270)
                      |+..+..+||.||+.||+||+.||++||+.|.+ |||||+|||+||+||.+|+++|++.+.+.
T Consensus        25 R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~   87 (97)
T 4aya_A           25 RSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPS   87 (97)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            344445677999999999999999999999877 89999999999999999999999877543

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.64  E-value=1e-16  Score=122.24  Aligned_cols=62  Identities=31%  Similarity=0.355  Sum_probs=51.5

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCC-CCCCCC-CHHHHHHHHHHHHHHHHHHhccCCC
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPA-LPSDKL-SKIQTLKLASRYIHFLCEILHGSED  217 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~-~p~~KL-SKIetLr~Ai~YI~~L~~lL~~~~~  217 (270)
                      .++|.++|++||+|+..||++|+.||.+||. .+.+|. ||++||+.|++||.+|++.|++-+.
T Consensus         3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999994 677765 8999999999999999999987653

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.59  E-value=1.9e-15  Score=114.76  Aligned_cols=60  Identities=32%  Similarity=0.506  Sum_probs=56.0

Q ss_pred             hHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627         155 LHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG  214 (270)
Q Consensus       155 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~  214 (270)
                      ...+|..||++||+|+..||.+|+.||.+||..++.|+||+.||+.|++||..|+..+..
T Consensus         9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~   68 (80)
T 1hlo_A            9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHT   68 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999888999999999999999999987653

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.53  E-value=1.4e-14  Score=110.31  Aligned_cols=56  Identities=34%  Similarity=0.574  Sum_probs=53.1

Q ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      +|..||.+||+|+..||.+|+.||.+||..++.|+||+.||+.|++||..|+..+.
T Consensus         2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~   57 (83)
T 1nkp_B            2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH   57 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999888899999999999999999997654

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.52  E-value=2.1e-14  Score=111.64  Aligned_cols=59  Identities=36%  Similarity=0.460  Sum_probs=54.4

Q ss_pred             hHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         155 LHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       155 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      ...+|..||++||+|+..||.+|..||.+||.++.. |+||+.||+.|++||..|+....
T Consensus         3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~   62 (88)
T 1nkp_A            3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ   62 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999998755 99999999999999999998654

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.45  E-value=1.4e-13  Score=105.50  Aligned_cols=55  Identities=24%  Similarity=0.268  Sum_probs=51.4

Q ss_pred             HhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         159 RILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       159 R~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      |..||+.||+|+..||.+|+.||..||..+.. |+||+.||+.|++||..|+.-..
T Consensus         2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~   57 (80)
T 1nlw_A            2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR   57 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999998765 99999999999999999998653

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.27  E-value=1e-11  Score=95.08  Aligned_cols=58  Identities=28%  Similarity=0.378  Sum_probs=52.9

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG  214 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~  214 (270)
                      ..+|..||..||+|+..||++|..||..||. ...|++|+.||..||+||.+|+..+..
T Consensus         4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~-~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~   61 (82)
T 1am9_A            4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVG-TEAKLNKSAVLRKAIDYIRFLQHSNQK   61 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999999997 345999999999999999999987763

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.24  E-value=1.6e-12  Score=94.90  Aligned_cols=55  Identities=33%  Similarity=0.352  Sum_probs=50.3

Q ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC----CCCHHHHHHHHHHHHHHHHHH
Q psy4627         157 SQRILANVRERQRTQSLNEAFTSLRKLIPALPSD----KLSKIQTLKLASRYIHFLCEI  211 (270)
Q Consensus       157 ~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~----KLSKIetLr~Ai~YI~~L~~l  211 (270)
                      .+|..||..||+|+..||.+|..|+.+||.....    |++|+.||..|++||..|+.-
T Consensus         4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~   62 (65)
T 1an4_A            4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS   62 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999987753    899999999999999999863

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.11  E-value=2.2e-10  Score=86.61  Aligned_cols=59  Identities=20%  Similarity=0.299  Sum_probs=53.0

Q ss_pred             hHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627         155 LHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG  214 (270)
Q Consensus       155 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~  214 (270)
                      ...+|..+|..||+|+..||..|..|+..||. ...|+.|..||+.||+||..|+..+.-
T Consensus         5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~-~~~K~dK~sIL~~aI~yik~Lq~~~~~   63 (71)
T 4h10_B            5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-NARKMDKSTVLQKSIDFLRKHKEITAW   63 (71)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-CCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC-CCCCCcHHHHHHHHHHHHHHHHHhhhH
Confidence            36789999999999999999999999999994 234999999999999999999997753

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.05  E-value=1.3e-10  Score=85.31  Aligned_cols=55  Identities=35%  Similarity=0.318  Sum_probs=49.2

Q ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHh
Q psy4627         158 QRILANVRERQRTQSLNEAFTSLRKLIPALP-----SDKLSKIQTLKLASRYIHFLCEIL  212 (270)
Q Consensus       158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p-----~~KLSKIetLr~Ai~YI~~L~~lL  212 (270)
                      +|..|+.-||.|+..||.+|..|+..||...     ..|+||..||.+|++||.+|++.+
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            5778999999999999999999999999652     349999999999999999998754

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.00  E-value=3e-10  Score=85.95  Aligned_cols=57  Identities=25%  Similarity=0.379  Sum_probs=51.0

Q ss_pred             hhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCHHHHHHHHHHHHHHHHH
Q psy4627         154 ELHSQRILANVRERQRTQSLNEAFTSLRKLIPALP--SDKLSKIQTLKLASRYIHFLCE  210 (270)
Q Consensus       154 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p--~~KLSKIetLr~Ai~YI~~L~~  210 (270)
                      ....+|..++..||+|+..||.+|..|+..||...  ..|+.|..||++||+||..|+.
T Consensus         5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            34678899999999999999999999999999753  3499999999999999999875

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=98.99  E-value=6.8e-10  Score=90.36  Aligned_cols=58  Identities=28%  Similarity=0.338  Sum_probs=46.8

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCC-C-CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPS-D-KLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~-~-KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      ..+|..||.-||+|+..||+.|..|+..||.... + |++|..||..||+||.+|+..+.
T Consensus        25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~   84 (118)
T 4ati_A           25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ   84 (118)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            3578889999999999999999999999998753 4 99999999999999999987665

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.38  E-value=4.5e-07  Score=83.05  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=43.7

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      ..+|..+|..||+|+..||..|..|+..|| ....||.|..||++|+.||+.|+.+-.
T Consensus        10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p-~~~~~~dk~~il~~~~~~~~~~~~~~~   66 (361)
T 4f3l_A           10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLP-GNARKMDKSTVLQKSIDFLRKHKETTA   66 (361)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCC-SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhCC-CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence            467888999999999999999999999999 233499999999999999999998654

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.03  E-value=3e-06  Score=78.67  Aligned_cols=55  Identities=25%  Similarity=0.373  Sum_probs=49.4

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCHHHHHHHHHHHHHHHHH
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALP--SDKLSKIQTLKLASRYIHFLCE  210 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p--~~KLSKIetLr~Ai~YI~~L~~  210 (270)
                      ..+|..+|.-||+|+..||..|.+|+.+||...  ..||.|..||++|+.||+.|+.
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence            467889999999999999999999999999754  2499999999999999999873

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=97.34  E-value=0.00045  Score=53.70  Aligned_cols=42  Identities=29%  Similarity=0.337  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhhCCCCC-CC-CCCHHHHHHHHHHHHHHHHHHh
Q psy4627         171 QSLNEAFTSLRKLIPALP-SD-KLSKIQTLKLASRYIHFLCEIL  212 (270)
Q Consensus       171 ~~lN~AF~~LR~~lP~~p-~~-KLSKIetLr~Ai~YI~~L~~lL  212 (270)
                      -.||..+.+|...||... .+ |.+|-.||+.|++||.+|++..
T Consensus         5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~   48 (83)
T 4ath_A            5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQ   48 (83)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTH
T ss_pred             hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHH
Confidence            469999999999999753 24 9999999999999999998743

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=94.21  E-value=0.072  Score=44.76  Aligned_cols=40  Identities=33%  Similarity=0.502  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHhhCCCCCCC--CCCHHHHHHHHHHHHHHHHH
Q psy4627         171 QSLNEAFTSLRKLIPALPSD--KLSKIQTLKLASRYIHFLCE  210 (270)
Q Consensus       171 ~~lN~AF~~LR~~lP~~p~~--KLSKIetLr~Ai~YI~~L~~  210 (270)
                      -.|+-+|.+|.+.||-+|++  +|.|-.||+.|.++...|..
T Consensus        94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~~  135 (138)
T 3muj_A           94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYG  135 (138)
T ss_dssp             CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHHC
T ss_pred             CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHhC
Confidence            46889999999999999987  99999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	8e-14
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	1e-10
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	6e-10
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	1e-09
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	5e-09
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	2e-08
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	5e-06

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.0 bits (153), Expect = 8e-14
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 142 MKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLA 201
           M+++RK          +R  A +RER+R   +NEAF +L++   + P+ +L K++ L+ A
Sbjct: 1   MELKRKTTNA-----DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNA 55

Query: 202 SRYIHFLCEILH 213
            RYI  L  +L 
Sbjct: 56  IRYIEGLQALLR 67

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           +R   N  ER+R   + ++F SLR  +P+L  +K S+ Q L  A+ YI ++
Sbjct: 2   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYM 52

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 6e-10
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 153 GELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFL 208
           G ++ +R   NV ERQR   L  +F +LR  IP L ++ K  K+  LK A+ YI  +
Sbjct: 1   GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 157 SQRILANVRERQRTQSLNEAFTSLRKLIPAL----PSDKLSKIQTLKLASRYIHFL 208
            +R   N  ER+R   +N     L K+IP           SK   L  AS YI  L
Sbjct: 4   KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (118), Expect = 5e-09
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 158 QRILANVRERQRTQSLNEAFTSLRKLIPAL-----PSDKLSKIQTLKLASRYIHFLCE 210
           +R      E+ R   L  A   L  LIPA       S   SK  T++ A RYI  L +
Sbjct: 2   KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQ 59

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 159 RILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFL 208
           R   N  E+ R   L  +   L+ L+P  P   + + +  L  A  +I  L
Sbjct: 2   RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKL 52

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 5e-06
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 157 SQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
            +R   N  E++   S+N+    L+ L+    + KL+K   L+ A  YI FL
Sbjct: 5   EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA-KLNKSAVLRKAIDYIRFL 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.67
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.44
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.41
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.26
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.43

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=8.1e-17  Score=117.93  Aligned_cols=59  Identities=36%  Similarity=0.563  Sum_probs=56.0

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG  214 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~  214 (270)
                      ..+|.+||.+||+|+..||.+|+.|+..||..+.+|++|+.||+.||+||.+|+++|++
T Consensus        10 ~~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~e   68 (68)
T d1mdya_          10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            57899999999999999999999999999999888999999999999999999998863

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.8e-14  Score=106.74  Aligned_cols=56  Identities=34%  Similarity=0.574  Sum_probs=53.2

Q ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      +|..||.+||+|+..||++|+.||.+||..+..|++|+.||+.|++||..|+..+.
T Consensus         2 rR~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~   57 (83)
T d1nkpb_           2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH   57 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999998888899999999999999999988765

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.1e-14  Score=105.19  Aligned_cols=59  Identities=36%  Similarity=0.438  Sum_probs=54.6

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILHG  214 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~~  214 (270)
                      ..+|..||++||+|+..||++|+.||.+||..+.. |+||+.||+.|++||..|+..+..
T Consensus         4 ~~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~   63 (88)
T d1nkpa_           4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK   63 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999987766 899999999999999999987753

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-13  Score=102.62  Aligned_cols=55  Identities=24%  Similarity=0.268  Sum_probs=51.9

Q ss_pred             HhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         159 RILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       159 R~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      |..||+.||+|+..||++|+.|+.+||..+.. |+||+.||+.|++||..|+..+.
T Consensus         2 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~   57 (79)
T d1nlwa_           2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR   57 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999988766 99999999999999999998765

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=6.9e-14  Score=100.38  Aligned_cols=55  Identities=35%  Similarity=0.336  Sum_probs=49.9

Q ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHhhCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy4627         158 QRILANVRERQRTQSLNEAFTSLRKLIPA-----LPSDKLSKIQTLKLASRYIHFLCEIL  212 (270)
Q Consensus       158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~-----~p~~KLSKIetLr~Ai~YI~~L~~lL  212 (270)
                      +|..||..||+|+..||.+|+.||..||.     .+..|++|..||+.|++||..|++.+
T Consensus         2 rR~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            58899999999999999999999999995     34559999999999999999998754

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.1e-13  Score=96.28  Aligned_cols=54  Identities=33%  Similarity=0.356  Sum_probs=49.2

Q ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCC----CCCCHHHHHHHHHHHHHHHHH
Q psy4627         157 SQRILANVRERQRTQSLNEAFTSLRKLIPALPS----DKLSKIQTLKLASRYIHFLCE  210 (270)
Q Consensus       157 ~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~----~KLSKIetLr~Ai~YI~~L~~  210 (270)
                      .+|..||..||+|+..||.+|+.|+..||....    .|++|..||..|++||..|++
T Consensus         4 ~rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~   61 (65)
T d1an4a_           4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            468889999999999999999999999998642    399999999999999999985

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.8e-12  Score=93.32  Aligned_cols=57  Identities=28%  Similarity=0.383  Sum_probs=51.9

Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy4627         156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILH  213 (270)
Q Consensus       156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~  213 (270)
                      ..+|..||..||+|+..||++|+.|+.+||.. ..|++|..||..|++||..|+..++
T Consensus         4 ~~kR~~H~~~Er~RR~~in~~~~~L~~llP~~-~~k~~K~~iL~~a~~yI~~L~~~~~   60 (80)
T d1am9a_           4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQ   60 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999963 3499999999999999999998765

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=6.9e-08  Score=68.24  Aligned_cols=42  Identities=29%  Similarity=0.476  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627         172 SLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG  214 (270)
Q Consensus       172 ~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~  214 (270)
                      .||+.|..||..||.. ..|.+|+.||..||+||..|+..+..
T Consensus         3 ~in~~f~~L~~lvP~~-~~K~~Ka~iL~~Ai~YI~~Lq~~~~~   44 (61)
T d1uklc_           3 SINDKIIELKDLVMGT-DAKMHKSGVLRKAIDYIKYLQQVNHK   44 (61)
T ss_dssp             CHHHHHHHHHHHHSCS-SCCCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999953 34999999999999999999987763