Psyllid ID: psy4643

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLKTFDF
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
mvdfgsgamsdtsIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEhylgpdwkadykprpdwkadykpreSVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKsnyqdqvlsfdpsvnvgqLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLKTFDF
mvdfgsgamsdtsiwIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHylgpdwkadykprPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKsilddestqfSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLKTFDF
MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCvlellevllKTFDF
***********TSIWIEGLLVFYEVFKFLESAME****NQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQL**********************LLAESRKVFLLNNSIIKCVLELLEVLLKTF**
*VDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPR*******KPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLKTFDF
********MSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDE*********EQLLAESRKVFLLNNSIIKCVLELLEVLLKTFDF
**DFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLK****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLKTFDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query207 2.2.26 [Sep-21-2011]
P14791296 Heme oxygenase 1 OS=Gallu yes N/A 0.797 0.557 0.277 1e-12
O78497237 Heme oxygenase OS=Guillar yes N/A 0.826 0.721 0.308 1e-12
P74133250 Heme oxygenase 2 OS=Synec N/A N/A 0.845 0.7 0.272 2e-12
O19998235 Heme oxygenase OS=Rhodell N/A N/A 0.840 0.740 0.267 7e-12
Q8YVS7238 Heme oxygenase 1 OS=Nosto no N/A 0.449 0.390 0.330 1e-10
Q5R7E3288 Heme oxygenase 1 OS=Pongo yes N/A 0.787 0.565 0.263 4e-10
P09601288 Heme oxygenase 1 OS=Homo yes N/A 0.787 0.565 0.263 5e-10
P32394288 Heme oxygenase 1 OS=Sus s yes N/A 0.797 0.572 0.261 7e-10
P06762289 Heme oxygenase 1 OS=Rattu yes N/A 0.893 0.640 0.243 2e-09
Q5E9F2289 Heme oxygenase 1 OS=Bos t yes N/A 0.743 0.532 0.260 2e-09
>sp|P14791|HMOX1_CHICK Heme oxygenase 1 OS=Gallus gallus GN=HMOX1 PE=1 SV=2 Back     alignment and function desciption
 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 93/180 (51%), Gaps = 15/180 (8%)

Query: 22  FYEVFKFLESAMEEHKSNQ-YLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKA 80
            Y ++  LE  +E +K N  Y   +   ++ R  A E DLE++ G +W+A+  P P    
Sbjct: 57  LYFIYSALEEEIERNKDNPVYAPVYFPMELHRKAALEKDLEYFYGSNWRAEI-PCP---- 111

Query: 81  DYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINK--KRQLSLMKSNYQ 138
                E+   Y+  L  + + +  LL+A+ Y  YLG LSGGQ++ K  ++ L L  +   
Sbjct: 112 -----EATQKYVERLHVVGKKHPELLVAHAYTRYLGDLSGGQVLKKIAQKALQLPSTGEG 166

Query: 139 DQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELL 198
               +FD   N  + K+  +S ++  + +    T++++L E++K FLLN  + + + +L+
Sbjct: 167 LAFFTFDGVSNATKFKQLYRSRMN--ALEMDHATKKRVLEEAKKAFLLNIQVFEALQKLV 224
Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. Under physiological conditions, the activity of heme oxygenase is highest in the spleen, where senescent erythrocytes are sequestrated and destroyed.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: 3
>sp|O78497|HO_GUITH Heme oxygenase OS=Guillardia theta GN=pbsA PE=3 SV=1 Back     alignment and function description
>sp|P74133|HO2_SYNY3 Heme oxygenase 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=pbsA2 PE=1 SV=1 Back     alignment and function description
>sp|O19998|HO_RHOVL Heme oxygenase OS=Rhodella violacea GN=pbsA PE=3 SV=1 Back     alignment and function description
>sp|Q8YVS7|HO1_NOSS1 Heme oxygenase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=pbsA1 PE=3 SV=1 Back     alignment and function description
>sp|Q5R7E3|HMOX1_PONAB Heme oxygenase 1 OS=Pongo abelii GN=HMOX1 PE=2 SV=1 Back     alignment and function description
>sp|P09601|HMOX1_HUMAN Heme oxygenase 1 OS=Homo sapiens GN=HMOX1 PE=1 SV=1 Back     alignment and function description
>sp|P32394|HMOX1_PIG Heme oxygenase 1 OS=Sus scrofa GN=HMOX1 PE=2 SV=1 Back     alignment and function description
>sp|P06762|HMOX1_RAT Heme oxygenase 1 OS=Rattus norvegicus GN=Hmox1 PE=1 SV=1 Back     alignment and function description
>sp|Q5E9F2|HMOX1_BOVIN Heme oxygenase 1 OS=Bos taurus GN=HMOX1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
383856298243 PREDICTED: heme oxygenase 1-like [Megach 0.893 0.761 0.407 4e-34
307203422251 Heme oxygenase 2 [Harpegnathos saltator] 0.893 0.737 0.428 7e-34
170042113244 heme oxygenase 1 [Culex quinquefasciatus 0.811 0.688 0.405 8e-34
332029288251 Heme oxygenase 2 [Acromyrmex echinatior] 0.898 0.741 0.408 3e-32
350416375247 PREDICTED: heme oxygenase 1-like [Bombus 0.874 0.732 0.393 3e-31
307180788253 Heme oxygenase 2 [Camponotus floridanus] 0.830 0.679 0.403 4e-31
242017138243 Heme oxygenase, putative [Pediculus huma 0.845 0.720 0.418 4e-31
340717108247 PREDICTED: heme oxygenase 1-like [Bombus 0.888 0.744 0.384 2e-30
347971004249 AGAP003975-PA [Anopheles gambiae str. PE 0.816 0.678 0.374 5e-30
336391152250 heme oxygenase [Nasonia vitripennis] 0.835 0.692 0.404 6e-30
>gi|383856298|ref|XP_003703646.1| PREDICTED: heme oxygenase 1-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 124/201 (61%), Gaps = 16/201 (7%)

Query: 8   AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPD 67
            + D S+W +GLL+FYE+F++LESAM   K    +  F I D+ RT+AFE+DL++YLG D
Sbjct: 33  GLFDDSVWADGLLIFYEIFRYLESAMIRWKHTN-VGLFLIDDLSRTKAFESDLDYYLGKD 91

Query: 68  WKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKK 127
           W+ DY P          RESV  YL HL+ ++  + TLLIAY+YH+Y+G+LSGG I+ KK
Sbjct: 92  WRKDYTP----------RESVAKYLMHLQQIENEDPTLLIAYIYHLYMGLLSGGIILRKK 141

Query: 128 RQL-----SLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAESRK 182
           R L        +S      ++  P+ N+ +LK++++  ++  +       + +LL ES++
Sbjct: 142 RHLMQKIFPRKESQTDGNNVTDFPNSNIYELKQRMRDTMNKIAETLDEDMKNKLLEESKQ 201

Query: 183 VFLLNNSIIKCVLELLEVLLK 203
           VF+LNN IIK V  +   LLK
Sbjct: 202 VFVLNNEIIKSVRGVGNSLLK 222

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307203422|gb|EFN82497.1| Heme oxygenase 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|170042113|ref|XP_001848782.1| heme oxygenase 1 [Culex quinquefasciatus] gi|167865650|gb|EDS29033.1| heme oxygenase 1 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|332029288|gb|EGI69271.1| Heme oxygenase 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350416375|ref|XP_003490927.1| PREDICTED: heme oxygenase 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307180788|gb|EFN68652.1| Heme oxygenase 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|242017138|ref|XP_002429049.1| Heme oxygenase, putative [Pediculus humanus corporis] gi|212513904|gb|EEB16311.1| Heme oxygenase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340717108|ref|XP_003397030.1| PREDICTED: heme oxygenase 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|347971004|ref|XP_318426.5| AGAP003975-PA [Anopheles gambiae str. PEST] gi|333469587|gb|EAA13618.5| AGAP003975-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|336391152|ref|NP_001135857.1| heme oxygenase [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
FB|FBgn0037933296 Ho "Heme oxygenase" [Drosophil 0.352 0.246 0.409 5.2e-17
UNIPROTKB|F1NC96296 HMOX1 "Heme oxygenase 1" [Gall 0.763 0.533 0.283 3.2e-14
UNIPROTKB|P14791296 HMOX1 "Heme oxygenase 1" [Gall 0.763 0.533 0.283 3.2e-14
UNIPROTKB|F1NQF4298 HMOX1 "Heme oxygenase 1" [Gall 0.763 0.530 0.283 3.4e-14
ZFIN|ZDB-GENE-030131-3102272 hmox1 "heme oxygenase (decycli 0.840 0.639 0.275 4.9e-14
UNIPROTKB|Q5E9F2289 HMOX1 "Heme oxygenase 1" [Bos 0.840 0.602 0.247 1.8e-11
UNIPROTKB|E2R513316 HMOX2 "Uncharacterized protein 0.753 0.493 0.269 1.9e-11
UNIPROTKB|F1P8U7288 HMOX1 "Uncharacterized protein 0.739 0.531 0.261 2.3e-11
UNIPROTKB|I3L1F5238 HMOX2 "Heme oxygenase 2" [Homo 0.753 0.655 0.269 2.8e-11
UNIPROTKB|P09601288 HMOX1 "Heme oxygenase 1" [Homo 0.739 0.531 0.267 3.8e-11
FB|FBgn0037933 Ho "Heme oxygenase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 171 (65.3 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
 Identities = 34/83 (40%), Positives = 49/83 (59%)

Query:    49 DMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIA 108
             +  RT AFE D  ++ G DW+ DY+ RP          +V  YL HLE +   N+ LL A
Sbjct:    86 EFHRTAAFERDFAYFYGSDWRKDYEIRP----------AVQKYLEHLEKIAAQNELLLFA 135

Query:   109 YVYHMYLGVLSGGQIINKKRQLS 131
             Y Y MY+ ++SGGQ++ KKR ++
Sbjct:   136 YSYQMYMALMSGGQMLQKKRMIA 158
GO:0004392 "heme oxygenase (decyclizing) activity" evidence=ISS;IDA
GO:0006788 "heme oxidation" evidence=IEA
GO:0042168 "heme metabolic process" evidence=IMP
UNIPROTKB|F1NC96 HMOX1 "Heme oxygenase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P14791 HMOX1 "Heme oxygenase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQF4 HMOX1 "Heme oxygenase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3102 hmox1 "heme oxygenase (decycling) 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9F2 HMOX1 "Heme oxygenase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R513 HMOX2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8U7 HMOX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3L1F5 HMOX2 "Heme oxygenase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P09601 HMOX1 "Heme oxygenase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O78497HO_GUITH1, ., 1, 4, ., 9, 9, ., 30.30810.82600.7215yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.99LOW CONFIDENCE prediction!
3rd Layer1.14.99.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
cd00232203 cd00232, HemeO, Heme oxygenase catalyzes the rate 1e-30
pfam01126204 pfam01126, Heme_oxygenase, Heme oxygenase 9e-27
CHL00168238 CHL00168, pbsA, heme oxygenase; Provisional 3e-18
COG5398238 COG5398, COG5398, Heme oxygenase [Inorganic ion tr 4e-16
>gnl|CDD|238143 cd00232, HemeO, Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme Back     alignment and domain information 
 Score =  111 bits (279), Expect = 1e-30
 Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 14/190 (7%)

Query: 1   MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADL 60
           M D   G +S        L   Y V++ LE+ +E  K N YL    + +++R  A E DL
Sbjct: 23  MKDLLKGFLSREGY-ARFLANLYLVYRALEALLEASKDNPYLAPLYLPELERAAALEKDL 81

Query: 61  EHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSG 120
            +  G DW+    P P              Y   L ++ + N  LL+ + Y  Y   LSG
Sbjct: 82  AYLGGSDWRVREPPLP-----------AAAYAARLREIAEENPALLLGHAYVRYGADLSG 130

Query: 121 GQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAES 180
           GQ++ K  Q +L+         +F    + G  KR+ +  LD  +     + R++++AE+
Sbjct: 131 GQVLAKIAQRALLLEGKGLAFYAFHGIADRGLFKREFREALD--ALPLDEEERQRVVAEA 188

Query: 181 RKVFLLNNSI 190
           R  F LN  +
Sbjct: 189 RAAFRLNGQV 198

Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens. Length = 203
>gnl|CDD|201611 pfam01126, Heme_oxygenase, Heme oxygenase Back     alignment and domain information
>gnl|CDD|214383 CHL00168, pbsA, heme oxygenase; Provisional Back     alignment and domain information
>gnl|CDD|227685 COG5398, COG5398, Heme oxygenase [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 207
CHL00168238 pbsA heme oxygenase; Provisional 100.0
COG5398238 Heme oxygenase [Inorganic ion transport and metabo 100.0
PF01126205 Heme_oxygenase: Heme oxygenase; InterPro: IPR01605 100.0
cd00232203 HemeO Heme oxygenase catalyzes the rate limiting s 100.0
KOG4480|consensus283 99.84
COG3230196 HemO Heme oxygenase [Inorganic ion transport and m 99.27
KOG4480|consensus283 99.05
PF03070210 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR0 89.34
>CHL00168 pbsA heme oxygenase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.8e-53  Score=361.66  Aligned_cols=186  Identities=26%  Similarity=0.426  Sum_probs=177.3

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCCCccccCCCCh
Q psy4643           7 GAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRE   86 (207)
Q Consensus         7 ~~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~~~~~p   86 (207)
                      +|..+++.|+++|.+||+||.+||+++++++++|++++++.|+|+|+++|++||++|+|++|++          .++|+|
T Consensus        31 ~g~~~~~~Y~~ll~~ly~vY~aLE~~l~~~~~~~~~~~~~~peL~R~~aLe~DL~~l~G~~w~~----------~~~p~p  100 (238)
T CHL00168         31 GGVIDKKSYRKLVANLYFVYSAIEEEIEKNKEHPLIKPIYFQELNRKESLEKDLNYYYGDDWKS----------IIEPSP  100 (238)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccchhhhhhHHHHHHHHHHcCCCccc----------cCCCCh
Confidence            4789999999999999999999999999999999999999999999999999999999999998          789999


Q ss_pred             hHHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCc-CcccceeecCCCChHHHHHHHHHHHHhcc
Q psy4643          87 SVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSN-YQDQVLSFDPSVNVGQLKRQIKSILDDES  165 (207)
Q Consensus        87 a~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~-~g~~Fy~F~~~~~~~~~k~~yr~~ld~l~  165 (207)
                      +++.||+||+++++++|++|+||+|||||||+||||||+++++++.++++ .|++||.|+++.+++.+|+.||++||++ 
T Consensus       101 a~~~Yv~rI~~~~~~~P~~LvAH~YvrYLGdlsGGQiI~k~l~r~~gl~~~~G~~Fy~F~~i~~~~~fk~~yr~~Ld~l-  179 (238)
T CHL00168        101 ATKIYVDRIHKISAKKPELLIAHAYTRYLGDLSGGQILKKIAQRAMNLSDSGGLAFYDFDNIEDDQEFKQIYKAALDNL-  179 (238)
T ss_pred             HHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCcCccccCCCCcCcHHHHHHHHHHHHhcC-
Confidence            99999999999999999999999999999999999999998888888865 7999999997789999999999999998 


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4643         166 TQFSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLKT  204 (207)
Q Consensus       166 ~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~~~~~~~  204 (207)
                       ++|++++++||+||+.+|++|++||.||++.....++.
T Consensus       180 -~l~e~e~~~iI~EA~~AF~lN~~vf~eL~~~~~~~~~~  217 (238)
T CHL00168        180 -PLSDDQIQNIIAEANIAFNLNMKMFQELNSSFIKIITM  217 (238)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             89999999999999999999999999999998877754

>COG5398 Heme oxygenase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1 Back     alignment and domain information
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme Back     alignment and domain information
>KOG4480|consensus Back     alignment and domain information
>COG3230 HemO Heme oxygenase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4480|consensus Back     alignment and domain information
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
1wov_A250 Crystal Strucure Of Heme Oxygenase-2 From Synechocy 6e-13
1dvg_A267 Crystal Structure Of Rat Heme Oxygenase-1 In Comple 5e-11
1oyk_A233 Crystal Structures Of The Ferric, Ferrous, And Ferr 9e-11
1ni6_A224 Comparisions Of The Heme-free And-bound Crystal Str 3e-10
1n3u_A233 Crystal Structure Of Human Heme Oxygenase 1 (Ho-1) 3e-10
1dve_A267 Crystal Structure Of Rat Heme Oxygenase-1 In Comple 3e-10
3i9t_A263 Crystal Structure Of The Rat Heme Oxygenase (Ho-1) 4e-10
1xk2_A233 Nadph- And Ascorbate-Supported Heme Oxygenase React 5e-10
1xjz_A233 Crystal Structures Of The G139a, G139a-No And G143h 2e-09
1xk0_A233 Crystal Structures Of The G139a, G139a-No And G143h 3e-09
1xk1_A233 Crystal Structures Of The G139a, G139a-No And G143h 6e-09
2q32_A264 Crystal Structure Of Human Heme Oxygenase-2 C127a ( 7e-09
1we1_A240 Crystal Structure Of Heme Oxygenase-1 From Cyanobac 2e-08
1wnv_A215 D136a Mutant Of Heme Oxygenase From Corynebacterium 5e-08
1wnx_A215 D136e Mutant Of Heme Oxygenase From Corynebacterium 1e-07
1wnw_A215 D136n Mutant Of Heme Oxygenase From Corynebacterium 2e-07
1iw0_A215 Crystal Structure Of A Heme Oxygenase (Hmuo) From C 2e-07
>pdb|1WOV|A Chain A, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 In Complex With Heme Length = 250 Back     alignment and structure 
Iteration: 1

 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 22  FYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKAD 81
            Y ++  LE+A+ +H+ N+ +      ++ RT+    DL +Y GP+W+   +P P  K  
Sbjct: 45  LYYLYSALEAALRQHRDNEIISAIYFPELNRTDKLAEDLTYYYGPNWQQIIQPTPCAKI- 103
Query: 82  YKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQII-NKKRQLSLMKSNYQDQ 140
                    Y++ L+ +  +   LLIA+ Y  YLG LSGGQ + N  R    +       
Sbjct: 104 ---------YVDRLKTIAASEPELLIAHCYTRYLGDLSGGQSLKNIIRSALQLPEGEGTA 154
Query: 141 VLSFDPSVNVGQLKRQIKSILDD--ESTQFSRQTREQLLAESRKVFLLNNSII 191
           +  FD     G  +RQ K I  D   S      T  +++ E+   F LN  ++
Sbjct: 155 MYEFDSLPTPGD-RRQFKEIYRDVLNSLPLDEATINRIVEEANYAFSLNREVM 206
>pdb|1DVG|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With Heme; Seleleno-Methionine Derivative, Mutated At M51t,M93l, M155l,M191l. Length = 267 Back     alignment and structure
>pdb|1OYK|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1: Catalytic Implications Length = 233 Back     alignment and structure
>pdb|1NI6|A Chain A, Comparisions Of The Heme-free And-bound Crystal Structures Of Human Heme Oxygenase-1 Length = 224 Back     alignment and structure
>pdb|1N3U|A Chain A, Crystal Structure Of Human Heme Oxygenase 1 (Ho-1) In Complex With Its Substrate Heme, Crystal Form B Length = 233 Back     alignment and structure
>pdb|1DVE|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With Heme Length = 267 Back     alignment and structure
>pdb|3I9T|A Chain A, Crystal Structure Of The Rat Heme Oxygenase (Ho-1) In Comple Heme Binding Dithiothreitol (Dtt) Length = 263 Back     alignment and structure
>pdb|1XK2|A Chain A, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions Are Distinct. Regiospecificity Of Heme Cleavage By The R183e Mutant Length = 233 Back     alignment and structure
>pdb|1XJZ|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h Mutants Of Human Heme Oxygenase-1 Length = 233 Back     alignment and structure
>pdb|1XK0|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h Mutants Of Human Heme Oxygenase-1 Length = 233 Back     alignment and structure
>pdb|1XK1|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h Mutants Of Human Heme Oxygenase-1 Length = 233 Back     alignment and structure
>pdb|2Q32|A Chain A, Crystal Structure Of Human Heme Oxygenase-2 C127a (Ho-2) Length = 264 Back     alignment and structure
>pdb|1WE1|A Chain A, Crystal Structure Of Heme Oxygenase-1 From Cyanobacterium Synechocystis Sp. Pcc6803 In Complex With Heme Length = 240 Back     alignment and structure
>pdb|1WNV|A Chain A, D136a Mutant Of Heme Oxygenase From Corynebacterium Diphtheriae (Hmuo) Length = 215 Back     alignment and structure
>pdb|1WNX|A Chain A, D136e Mutant Of Heme Oxygenase From Corynebacterium Diphtheriae (Hmuo) Length = 215 Back     alignment and structure
>pdb|1WNW|A Chain A, D136n Mutant Of Heme Oxygenase From Corynebacterium Diphtheriae (hmuo) Length = 215 Back     alignment and structure
>pdb|1IW0|A Chain A, Crystal Structure Of A Heme Oxygenase (Hmuo) From Corynebacterium Diphtheriae Complexed With Heme In The Ferric State Length = 215 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
1wzd_A215 Heme oxygenase; electron-transfer, artificial meta 2e-29
2q32_A264 Heme oxygenase 2, HO-2; structural genomics medica 1e-28
1we1_A240 Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A 1e-27
1n45_A233 Heme oxygenase 1, HO-1; alpha helices, heme-bindin 8e-27
1wov_A250 Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: 2e-26
1j02_A267 Heme oxygenase 1; alpha helix, O2-analog bound for 2e-26
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A* Length = 215 Back     alignment and structure
 Score =  107 bits (269), Expect = 2e-29
 Identities = 43/199 (21%), Positives = 85/199 (42%), Gaps = 13/199 (6%)

Query: 1   MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADL 60
           M D   G +   + +       +  +  LE A++  +++ + +      + R E    DL
Sbjct: 29  MSDLLKGRL-GVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDL 87

Query: 61  EHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTND-TLLIAYVYHMYLGVLS 119
           +   G           +W++      +V++Y+N LE+++   D   L+A+ Y  YLG LS
Sbjct: 88  DKLNGS---------SEWRSRITASPAVIDYVNRLEEIRDNVDGPALVAHHYVRYLGDLS 138

Query: 120 GGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAE 179
           GGQ+I +  Q              F+    +   K + +  L+  + + S + RE LL E
Sbjct: 139 GGQVIARMMQRHYGVDPEALGFYHFEGIAKLKVYKDEYREKLN--NLELSDEQREHLLKE 196

Query: 180 SRKVFLLNNSIIKCVLELL 198
           +   F+ N+ +   + + L
Sbjct: 197 ATDAFVFNHQVFADLGKGL 215
>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance, structural genomics community request, protein structure in PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A* 2rgz_A* Length = 264 Back     alignment and structure
>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis SP} SCOP: a.132.1.1 Length = 240 Back     alignment and structure
>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site, oxidoreductase; HET: HEM; 1.50A {Homo sapiens} SCOP: a.132.1.1 PDB: 1n3u_A* 1ozr_A* 1ozw_A* 1s13_A* 1s8c_A* 1t5p_A* 1twn_A* 1twr_A* 3czy_A* 3hok_A* 3k4f_A* 3tgm_A* 1xjz_A* 1xk3_A* 1xk2_A* 1ozl_A* 1oyk_A* 1oze_A* 1oyl_A* 1xk0_A* ... Length = 233 Back     alignment and structure
>1wov_A Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: HEM; 1.75A {Synechocystis SP} SCOP: a.132.1.1 PDB: 1wow_A* 1wox_A* Length = 250 Back     alignment and structure
>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A* 1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A* 2zvu_A* 1dvg_A* 3i9t_A* 3i9u_A* Length = 267 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
1we1_A240 Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A 100.0
1wov_A250 Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: 100.0
2q32_A264 Heme oxygenase 2, HO-2; structural genomics medica 100.0
1wzd_A215 Heme oxygenase; electron-transfer, artificial meta 100.0
1j02_A267 Heme oxygenase 1; alpha helix, O2-analog bound for 100.0
1n45_A233 Heme oxygenase 1, HO-1; alpha helices, heme-bindin 100.0
1sk7_A198 Hypothetical protein PA-HO; heme oxygenase, heme d 99.97
1j77_A209 HEMO, heme oxygenase; proximal histidine, distal h 99.96
3dde_A239 TENA/THI-4 protein, domain of unknown function WI 99.71
1rtw_A220 Transcriptional activator, putative; PF1337, TENA, 93.75
2f2g_A221 SEED maturation protein PM36 homolog; TENA_THI-4 d 92.91
4fn6_A229 Thiaminase-2, thiaminase II; alpha-helix, vitamin 90.74
2qcx_A263 Transcriptional activator TENA; UP-DOWN bundle, hy 90.05
3ibx_A221 TENA, HP1287, putative thiaminase II; vitamin B1, 88.68
1rcw_A231 CT610, CADD; iron, DI-iron, redox enzyme, metallo 87.82
3b5o_A244 CADD-like protein of unknown function; structural 84.2
1udd_A226 Transcriptional regulator; helix-bundle, lipid bin 83.03
3no6_A248 Transcriptional activator TENA; structural genomic 82.94
3bjd_A332 Putative 3-oxoacyl-(acyl-carrier-protein) synthas; 82.69
1z72_A225 Transcriptional regulator, putative; structu genom 80.64
>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis SP} SCOP: a.132.1.1 Back     alignment and structure
Probab=100.00  E-value=3.9e-47  Score=324.16  Aligned_cols=187  Identities=21%  Similarity=0.374  Sum_probs=176.5

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCCCccccCCCCh
Q psy4643           7 GAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRE   86 (207)
Q Consensus         7 ~~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~~~~~p   86 (207)
                      ++..|++.|+++|.++|+||.+||++++++.++|++++++.|+|.|+++|++||++|+|++|++          .++|+|
T Consensus        31 ~g~~~~~~Y~~~L~~~y~vy~~LE~~~~~~~~~p~l~~~~~~el~R~~~L~~DL~~l~g~~~~~----------~~~p~~  100 (240)
T 1we1_A           31 KGVVEKNSYRKLVGNLYFVYSAMEEEMAKFKDHPILSHIYFPELNRKQSLEQDLQFYYGSNWRQ----------EVKISA  100 (240)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTGGGGCCTTSCCHHHHHHHHHHHHCTTHHH----------HCCCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCchhHhhhhHhhhhHHHHHHHHHHhcCCCccc----------cCCCCH
Confidence            5789999999999999999999999999999999999999999999999999999999999986          678899


Q ss_pred             hHHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCcccceeecCCCChHHHHHHHHHHHHhccc
Q psy4643          87 SVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDEST  166 (207)
Q Consensus        87 a~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~~Fy~F~~~~~~~~~k~~yr~~ld~l~~  166 (207)
                      +++.||+||+++++++|.+++||+||+|||++||||+|+++++.+.++++.|++||.|+++.+.+.+|+.||+.||++  
T Consensus       101 a~~~yv~~i~~i~~~~P~~llg~~Yv~y~g~lsGGq~i~~~~~~~l~L~~~g~~fy~f~~~~d~~~~k~~fr~~Ld~l--  178 (240)
T 1we1_A          101 AGQAYVDRVRQVAATAPELLVAHSYTRYLGDLSGGQILKKIAQNAMNLHDGGTAFYEFADIDDEKAFKNTYRQAMNDL--  178 (240)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSSCGGGCCTTCSSHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcCcccchhcccCCcCCHHHHHHHHHHHHhcC--
Confidence            999999999999999999999999999999999999999997777788888999999997778999999999999998  


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4643         167 QFSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLKTF  205 (207)
Q Consensus       167 ~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~~~~~~~~  205 (207)
                      ++|++++++||+||+.+|++|++||++|++....++.++
T Consensus       179 ~l~~~e~~~ii~eA~~aF~~n~~if~eL~~~~~~~~~~~  217 (240)
T 1we1_A          179 PIDQATAERIVDEANDAFAMNMKMFNELEGNLIKAIGIM  217 (240)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999998887776543
>1wov_A Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: HEM; 1.75A {Synechocystis SP} SCOP: a.132.1.1 PDB: 1wow_A* 1wox_A* Back     alignment and structure
>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance, structural genomics community request, protein structure in PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A* 2rgz_A* Back     alignment and structure
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A* Back     alignment and structure
>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A* 1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A* 2zvu_A* 1dvg_A* 3i9t_A* 3i9u_A* Back     alignment and structure
>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site, oxidoreductase; HET: HEM; 1.50A {Homo sapiens} SCOP: a.132.1.1 PDB: 1n3u_A* 1ozr_A* 1ozw_A* 1s13_A* 1s8c_A* 1t5p_A* 1twn_A* 1twr_A* 3czy_A* 3hok_A* 3k4f_A* 3tgm_A* 1xjz_A* 1xk3_A* 1xk2_A* 1ozl_A* 1oyk_A* 1oze_A* 1oyl_A* 1xk0_A* ... Back     alignment and structure
>1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme degradation, regioselectivity, oxidored; HET: HEM; 1.60A {Pseudomonas aeruginosa} SCOP: a.132.1.2 Back     alignment and structure
>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix, oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis} SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A* Back     alignment and structure
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217} Back     alignment and structure
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3 Back     alignment and structure
>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, struct genomics, protein structure initiative; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A* Back     alignment and structure
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus} Back     alignment and structure
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A Back     alignment and structure
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A Back     alignment and structure
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4 Back     alignment and structure
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A* Back     alignment and structure
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3 Back     alignment and structure
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0 Back     alignment and structure
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1} Back     alignment and structure
>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 207
d1wova1249 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocysti 1e-26
d1we1a_222 a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocys 6e-24
d1n45a_214 a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Hom 1e-22
d1wzda1207 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebac 2e-21
d1j77a_200 a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Neisser 5e-12
d1sk7a_187 a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Pseudom 1e-11
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 249 Back     information, alignment and structure

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: Eukaryotic type heme oxygenase
domain: Heme oxygenase 2
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score =  100 bits (250), Expect = 1e-26
 Identities = 45/208 (21%), Positives = 90/208 (43%), Gaps = 21/208 (10%)

Query: 1   MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADL 60
           M  F  G + +   + + L   Y ++  LE+A+ +H+ N+ +      ++ RT+    DL
Sbjct: 24  MKCFLKGIV-EREPFRQLLANLYYLYSALEAALRQHRDNEIISAIYFPELNRTDKLAEDL 82

Query: 61  EHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSG 120
            +Y GP+W+   +P P              Y++ L+ +  +   LLIA+ Y  YLG LSG
Sbjct: 83  TYYYGPNWQQIIQPTP----------CAKIYVDRLKTIAASEPELLIAHCYTRYLGDLSG 132

Query: 121 GQIINKKRQLSLMKSNYQDQVLSF------DPSVNVGQLKRQIKSILDDESTQFSRQTRE 174
           GQ +    + +L       +  +           +  Q K   + +L+         T  
Sbjct: 133 GQSLKNIIRSALQLPE--GEGTAMYEFDSLPTPGDRRQFKEIYRDVLNSLPL--DEATIN 188

Query: 175 QLLAESRKVFLLNNSIIKCVLELLEVLL 202
           +++ E+   F LN  ++  + +L++  +
Sbjct: 189 RIVEEANYAFSLNREVMHDLEDLIKAAI 216
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp. [TaxId: 1143]} Length = 222 Back     information, alignment and structure
>d1n45a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium diphtheriae [TaxId: 1717]} Length = 207 Back     information, alignment and structure
>d1j77a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Neisseria meningitidis [TaxId: 487]} Length = 200 Back     information, alignment and structure
>d1sk7a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 187 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
d1wova1249 Heme oxygenase 2 {Synechocystis sp. pcc 6803 [TaxI 100.0
d1we1a_222 Heme oxygenase-1 (HO-1) {Synechocystis sp. [TaxId: 100.0
d1n45a_214 Heme oxygenase-1 (HO-1) {Human (Homo sapiens) [Tax 100.0
d1wzda1207 Heme oxygenase HmuO {Corynebacterium diphtheriae [ 100.0
d1sk7a_187 Heme oxygenase HemO (PigA) {Pseudomonas aeruginosa 99.97
d1j77a_200 Heme oxygenase HemO (PigA) {Neisseria meningitidis 99.97
d1rtwa_206 Putative transcriptional activator PF1337 {Archaeo 95.44
d1rcwa_213 Hypothetical protein CT610 {Chlamydia trachomatis 93.32
d1to9a_225 Transcriptional activator TenA {Bacillus subtilis 92.68
d2f2ga1215 Seed maturation protein-related At3g16990 {Thale c 91.96
d1wwma1180 Hypothetical protein TTHA0169 (TT2028) {Thermus th 89.85
d1otva_254 Coenzyme PQQ synthesis protein C, PqqC {Klebsiella 87.92
d1z72a1217 Putative transcriptional regulator SP0716 (SPr0628 87.88
d1udda_215 Hypothetical transcriptional regulator PH1161 {Pyr 81.1
d2gm8a1211 TenA homolog PAE0170 {Archaeon Pyrobaculum aerophi 80.16
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: Eukaryotic type heme oxygenase
domain: Heme oxygenase 2
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=100.00  E-value=1.6e-46  Score=320.05  Aligned_cols=184  Identities=23%  Similarity=0.450  Sum_probs=172.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCCCccccCCCChh
Q psy4643           8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRES   87 (207)
Q Consensus         8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~~~~~pa   87 (207)
                      |..|++.|+++|.++|+||.+||++++++.++|.+..++.|++.|+++|++||++|+|.+|++          .+.|+|+
T Consensus        30 g~~s~~~Y~~~L~~~y~vY~~LE~~~~~~~~~~~~~~~~~~~l~R~~~l~~DL~~l~g~~~~~----------~~~~~~a   99 (249)
T d1wova1          30 GIVEREPFRQLLANLYYLYSALEAALRQHRDNEIISAIYFPELNRTDKLAEDLTYYYGPNWQQ----------IIQPTPC   99 (249)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHCCGGGCCHHHHHHHHHHHHCTTHHH----------HCCCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccChhhhcchhHHHHHHHHcCCCchh----------cCCCChH
Confidence            678999999999999999999999999999999999999999999999999999999999987          6788999


Q ss_pred             HHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccC-cCcccceeecCCC---ChHHHHHHHHHHHHh
Q psy4643          88 VVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKS-NYQDQVLSFDPSV---NVGQLKRQIKSILDD  163 (207)
Q Consensus        88 ~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~-~~g~~Fy~F~~~~---~~~~~k~~yr~~ld~  163 (207)
                      +..||+||+++++++|.+|+||+|||||||+||||||+++++...+++ +.|++||.|++..   +.+.||+.||++||+
T Consensus       100 t~~Yv~~i~~i~~~~P~~llah~YvrylGdlsGGQ~I~k~l~~~l~l~~~~g~~fy~F~~~~~~~d~~~fK~~~r~~ld~  179 (249)
T d1wova1         100 AKIYVDRLKTIAASEPELLIAHCYTRYLGDLSGGQSLKNIIRSALQLPEGEGTAMYEFDSLPTPGDRRQFKEIYRDVLNS  179 (249)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTHHHHHHHHHHHHTTCCTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhccchHHHHHHHhhcCCCCCCccceeecCCCCchhHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999987777775 4699999999554   357899999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4643         164 ESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLK  203 (207)
Q Consensus       164 l~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~~~~~~  203 (207)
                      +  ++|++++++||+||+.+|++|++||+||++.+..++.
T Consensus       180 ~--~~~~~~~~~ii~EA~~aF~ln~~lf~eL~~~~~~~~~  217 (249)
T d1wova1         180 L--PLDEATINRIVEEANYAFSLNREVMHDLEDLIKAAIG  217 (249)
T ss_dssp             S--CCCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHC
T ss_pred             c--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8  7999999999999999999999999999999887764
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure
>d1n45a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium diphtheriae [TaxId: 1717]} Back     information, alignment and structure
>d1sk7a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1j77a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1otva_ a.132.1.4 (A:) Coenzyme PQQ synthesis protein C, PqqC {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure